Query psy9229
Match_columns 258
No_of_seqs 109 out of 153
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 22:12:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1eaq_A RUNT-related transcript 100.0 5.8E-86 2E-90 546.8 9.4 137 73-209 2-138 (140)
2 1eaq_A RUNT-related transcript 99.8 1.1E-20 3.8E-25 157.0 5.9 107 131-245 18-136 (140)
3 2wkk_A Galectin-2; sugar-bindi 79.4 12 0.0004 30.3 8.8 64 168-243 85-149 (150)
4 2yro_A Galectin-8; GAL-BIND le 72.4 10 0.00035 30.6 6.8 38 109-146 13-53 (155)
5 3nv1_A Galectin-9, galectin 9 71.1 10 0.00035 29.8 6.3 37 108-144 3-42 (138)
6 2zhn_A Galectin-9; beta sandwi 63.1 20 0.00068 28.4 6.6 22 168-198 95-116 (148)
7 2d6m_A Galectin-9, lectin, gal 62.9 17 0.00057 29.4 6.1 22 168-198 96-117 (159)
8 3zsj_A Galectin-3; sugar bindi 59.8 25 0.00087 27.6 6.6 22 111-132 2-23 (138)
9 1x50_A Galectin-4; GAL-BIND le 52.0 31 0.0011 28.1 6.1 22 168-198 105-126 (164)
10 3zxf_A Galectin-7; sugar bindi 43.9 43 0.0015 26.1 5.5 22 168-198 85-106 (138)
11 3lyw_A YBBR family protein; st 42.5 90 0.0031 23.7 6.9 46 170-217 3-50 (90)
12 2wsu_A Putative fiber protein; 34.7 71 0.0024 28.8 6.1 13 168-180 112-124 (343)
13 2kjq_A DNAA-related protein; s 33.9 25 0.00085 27.1 2.7 20 156-175 35-54 (149)
14 4f9p_D 103.2 anti-BTN3A1 antib 32.4 24 0.00082 31.7 2.6 29 161-191 197-225 (254)
15 1ww7_A Galectin; carbohydrate 32.4 1.3E+02 0.0043 24.9 6.8 24 111-134 10-33 (160)
16 4gp7_A Metallophosphoesterase; 32.1 11 0.00037 29.3 0.3 16 160-175 12-27 (171)
17 3sop_A Neuronal-specific septi 31.0 12 0.0004 32.1 0.4 16 160-175 5-20 (270)
18 2bme_A RAB4A, RAS-related prot 30.3 17 0.00059 26.9 1.1 24 149-172 2-25 (186)
19 1lvg_A Guanylate kinase, GMP k 29.1 13 0.00043 29.7 0.2 16 160-175 7-22 (198)
20 1znw_A Guanylate kinase, GMP k 29.0 13 0.00044 29.5 0.2 17 159-175 22-38 (207)
21 1pui_A ENGB, probable GTP-bind 28.4 14 0.00047 28.3 0.3 13 160-172 29-41 (210)
22 2oap_1 GSPE-2, type II secreti 28.3 13 0.00045 35.1 0.2 108 81-204 184-301 (511)
23 3c8u_A Fructokinase; YP_612366 27.9 18 0.0006 28.7 0.9 15 160-174 25-39 (208)
24 1z6g_A Guanylate kinase; struc 27.7 14 0.00047 30.0 0.2 16 160-175 26-41 (218)
25 3gfo_A Cobalt import ATP-bindi 26.7 17 0.00058 31.4 0.6 33 160-198 37-69 (275)
26 2fu5_C RAS-related protein RAB 25.7 29 0.00099 25.7 1.7 15 160-174 11-25 (183)
27 2gza_A Type IV secretion syste 25.4 12 0.0004 33.2 -0.6 40 159-204 177-216 (361)
28 1knq_A Gluconate kinase; ALFA/ 25.3 19 0.00066 27.1 0.6 13 160-172 11-23 (175)
29 4a74_A DNA repair and recombin 25.1 27 0.00092 27.0 1.4 28 149-176 17-44 (231)
30 2pcj_A ABC transporter, lipopr 24.9 18 0.0006 29.9 0.4 27 160-186 33-59 (224)
31 1ye8_A Protein THEP1, hypothet 24.7 17 0.00058 29.0 0.2 15 161-175 4-18 (178)
32 4f4c_A Multidrug resistance pr 24.7 22 0.00075 37.3 1.1 13 160-172 1108-1120(1321)
33 1kgd_A CASK, peripheral plasma 24.3 18 0.0006 28.1 0.2 15 160-174 8-22 (180)
34 3tr0_A Guanylate kinase, GMP k 24.0 18 0.00062 27.7 0.3 16 160-175 10-25 (205)
35 3kta_A Chromosome segregation 23.6 19 0.00066 27.3 0.3 14 161-174 30-43 (182)
36 1j6q_A Cytochrome C maturation 23.5 64 0.0022 26.3 3.5 34 108-141 72-112 (136)
37 2gj8_A MNME, tRNA modification 23.0 20 0.00069 27.1 0.3 12 160-171 7-18 (172)
38 2npi_A Protein CLP1; CLP1-PCF1 22.9 20 0.00069 33.4 0.4 71 124-199 93-176 (460)
39 2zej_A Dardarin, leucine-rich 22.3 23 0.0008 26.8 0.6 12 160-171 5-16 (184)
40 1mv5_A LMRA, multidrug resista 22.2 20 0.0007 29.8 0.2 26 160-185 31-56 (243)
41 2wji_A Ferrous iron transport 22.2 21 0.0007 26.6 0.2 12 160-171 6-17 (165)
42 2ff7_A Alpha-hemolysin translo 21.7 21 0.00072 30.0 0.2 32 161-198 39-70 (247)
43 4f9l_D 20.1 anti-BTN3A1 antibo 21.4 26 0.00088 31.5 0.7 29 161-191 61-89 (259)
44 3a00_A Guanylate kinase, GMP k 21.2 22 0.00075 27.6 0.2 15 161-175 5-19 (186)
45 3tif_A Uncharacterized ABC tra 21.1 22 0.00075 29.6 0.2 33 160-198 34-66 (235)
46 2cbz_A Multidrug resistance-as 21.1 22 0.00075 29.6 0.2 16 161-176 35-50 (237)
47 1sr3_A APO-CCME; OB fold, beta 21.0 46 0.0016 27.3 2.1 34 108-141 67-107 (136)
48 2j41_A Guanylate kinase; GMP, 20.9 23 0.00079 27.1 0.3 15 160-174 9-23 (207)
49 1a9x_B Carbamoyl phosphate syn 20.7 15 0.00052 33.9 -0.9 25 100-124 86-113 (379)
50 3jvv_A Twitching mobility prot 20.7 63 0.0022 29.0 3.1 84 115-204 81-166 (356)
51 1zp6_A Hypothetical protein AT 20.6 25 0.00084 26.7 0.4 15 160-174 12-26 (191)
52 2ehv_A Hypothetical protein PH 20.6 23 0.00079 27.7 0.2 24 152-175 25-48 (251)
53 2r0h_A CGL3 lectin; galectin-r 20.5 1.2E+02 0.0041 25.3 4.6 60 167-235 94-154 (164)
54 1yjd_C TP44, T-cell-specific s 20.4 3.2E+02 0.011 21.5 7.1 78 95-194 21-100 (140)
55 3ec2_A DNA replication protein 20.3 20 0.00068 27.4 -0.2 33 143-175 19-56 (180)
56 1g86_A Charcot-leyden crystal 20.2 68 0.0023 25.1 2.9 22 168-198 85-106 (142)
57 3asz_A Uridine kinase; cytidin 20.1 25 0.00085 27.3 0.3 13 160-172 9-21 (211)
58 3b85_A Phosphate starvation-in 20.1 33 0.0011 28.2 1.1 28 160-188 25-52 (208)
No 1
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=100.00 E-value=5.8e-86 Score=546.84 Aligned_cols=137 Identities=73% Similarity=1.164 Sum_probs=123.9
Q ss_pred hhhhhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhhhcc
Q psy9229 73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKN 152 (258)
Q Consensus 73 ~e~~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~mkn 152 (258)
+||++.|+|+|||||||+||||||+||+||+||||||+||++|||||||+|||||+|||+|||||||||||||++|+|||
T Consensus 2 ~er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mkn 81 (140)
T 1eaq_A 2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKN 81 (140)
T ss_dssp ---CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEET
T ss_pred cchhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCCCCCcc
Q psy9229 153 QVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKS 209 (258)
Q Consensus 153 qvA~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs~r~KS 209 (258)
||||||||||||||||||||+|||+|+|+|||||||++|||||||||||||++|+|.
T Consensus 82 qvA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rqk~ 138 (140)
T 1eaq_A 82 QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKL 138 (140)
T ss_dssp TEEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC----------
T ss_pred ccceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCccccccc
Confidence 999999999999999999999999999999999999999999999999999999984
No 2
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=99.81 E-value=1.1e-20 Score=156.96 Aligned_cols=107 Identities=36% Similarity=0.464 Sum_probs=89.6
Q ss_pred EeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeeeC
Q psy9229 131 IRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 131 v~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvDG 198 (258)
|..|+..-.|.-|..+|...|...+-|.-. .+|.-..|...|+. ........|+|.|++..+|
T Consensus 18 v~T~sP~~~cs~LP~HWRsNKtLP~~FkVv-alg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknqvA~FnDLRFv---- 92 (140)
T 1eaq_A 18 VRTDSPNFLSSVLPTHWRSNKTLPIAFKVV-ALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFV---- 92 (140)
T ss_dssp EECSSTTEEECCCCSEEETTCCCSSCCEEE-ESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEEECSSCEEC----
T ss_pred EecCCCCEEEccCcchhccCCCCCCceEEE-EecccCCCCEEEEEecCCcchhHHHHhHHHHHhhccceeeccccc----
Confidence 678999999999999999999999999984 55888999888877 2233445799999999999
Q ss_pred CCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCCCCCCCCCc
Q psy9229 199 PREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTI 245 (258)
Q Consensus 199 PRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGPRePR~k~~ 245 (258)
+||||||||+++|++.++||||+||.+|||||||||||||++..
T Consensus 93 ---gRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rq 136 (140)
T 1eaq_A 93 ---GRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ 136 (140)
T ss_dssp ---SCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC--------
T ss_pred ---ccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCccccc
Confidence 99999999999999999999999999999999999999998865
No 3
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=79.39 E-value=12 Score=30.27 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCCCCCcce-eeEEEeecCCCceeeeccceeeeeeCCCCCCCC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSF-TLTITISSSPPQVTTYSKAIKVTVDGPREPRSK 243 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs~r~KSf-~lTItisTSPPqvat~~~AIKVtVDGPRePR~k 243 (258)
+|+.|.|+|.+. .+.++|.|||=..---..+-.. .-++.+. -++..++.++.++|=|-.+|++.
T Consensus 85 ~G~~F~l~I~~~---------~~~f~V~VNg~~~~~F~hR~~~~~~~i~~~---g~~~~~s~~~~~~~~~~~~~~~~ 149 (150)
T 2wkk_A 85 RPPNPSITVIDH---------GDRFQIRFDYGTSIYYNKRIKENAAAIAYN---AENSLFSSPVTVDVHGLLPPLPP 149 (150)
T ss_dssp CSSSCEEEEEEC---------SSEEEEECSSSCCEEEECCSCSCEEEEEEE---ESSCSSCSSEEEEEESSCCCCCC
T ss_pred CCCCEEEEEEEC---------CCEEEEEECCEEEEEecCCCCCCccEEEEe---CCcEEEEEEEEEEeeccCCCCCC
Confidence 699999998775 4578888988544322222111 1223333 45677788888888887776654
No 4
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.41 E-value=10 Score=30.60 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=19.4
Q ss_pred CCCCcceEEEEeeecCCCeEEEEec---cCCCccceeccch
Q psy9229 109 KTLPVAFKVVALGDVMDGTIVTIRA---GNDENYCAELRNC 146 (258)
Q Consensus 109 KtLP~~FkVvalg~v~DGt~Vtv~A---GNdEn~~aeLRN~ 146 (258)
..|+++|+--.-+....|..|+|+. .+.+.+.=.|...
T Consensus 13 p~~~vPf~~~ip~gl~~G~~i~I~G~v~~~~~rF~Inl~~g 53 (155)
T 2yro_A 13 PQLSLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLLAG 53 (155)
T ss_dssp CCCCSSEEEECSSCCCTTCEEEEEEEECTTCCCEEEEEEET
T ss_pred CccccCEeeecCCCCccCCEEEEEEEECCCCCEEEEEEecC
Confidence 3456666554445566666666653 2334444444433
No 5
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=71.06 E-value=10 Score=29.84 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCCCCcceEEEEeeecCCCeEEEEec---cCCCccceecc
Q psy9229 108 NKTLPVAFKVVALGDVMDGTIVTIRA---GNDENYCAELR 144 (258)
Q Consensus 108 NKtLP~~FkVvalg~v~DGt~Vtv~A---GNdEn~~aeLR 144 (258)
++.++++|+--.-|....|..|+|+. .+.+.+.=.|.
T Consensus 3 ~~~~~vP~~~~i~~gl~~G~~i~I~G~v~~~~~~F~Inl~ 42 (138)
T 3nv1_A 3 HPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLC 42 (138)
T ss_dssp CCCCCSSEEEECTTCCCTTCEEEEEEEECTTCCBEEEEEE
T ss_pred CCccCcCEEeeCCCCCCCCCEEEEEEEECCCCCEEEEEcC
Confidence 35667777655556677777777763 23334444444
No 6
>2zhn_A Galectin-9; beta sandwich, carbohydrate binding protein, sugar protein; HET: NAG GAL; 1.30A {Homo sapiens} PDB: 2eak_A* 2eal_A* 2zhk_A* 2zhm_A* 2zhl_A* 2yy1_A* 3lsd_A 3lse_A*
Probab=63.09 E-value=20 Score=28.40 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=14.4
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+|+.|.|+|.+. .+.++|.|+|
T Consensus 95 ~G~~F~l~i~~~---------~~~f~V~vng 116 (148)
T 2zhn_A 95 KGMPFDLCFLVQ---------SSDFKVMVNG 116 (148)
T ss_dssp TTCEEEEEEEEC---------SSEEEEEETT
T ss_pred CCCeEEEEEEEc---------CCEEEEEECC
Confidence 477777777654 3456677776
No 7
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=62.89 E-value=17 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=15.5
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+|+.|.|+|.+. .+.++|.|||
T Consensus 96 ~G~~F~l~I~~~---------~~~f~V~Vng 117 (159)
T 2d6m_A 96 KGMPFELCFLVQ---------RSEFKVMVNK 117 (159)
T ss_dssp TTCEEEEEEEEC---------SSEEEEEETT
T ss_pred CCCcEEEEEEEe---------CCEEEEEECC
Confidence 578888877764 3567777776
No 8
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=59.83 E-value=25 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=12.8
Q ss_pred CCcceEEEEeeecCCCeEEEEe
Q psy9229 111 LPVAFKVVALGDVMDGTIVTIR 132 (258)
Q Consensus 111 LP~~FkVvalg~v~DGt~Vtv~ 132 (258)
|+++|+--.-|.+..|..|+|+
T Consensus 2 l~vP~~~~i~~gl~~G~~i~I~ 23 (138)
T 3zsj_A 2 LIVPYNLPLPGGVVPRMLITIL 23 (138)
T ss_dssp BCSSEEEECTTCCCTTEEEEEE
T ss_pred cccCEEeecCCCCCCCCEEEEE
Confidence 5566664444555666666665
No 9
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.04 E-value=31 Score=28.07 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.5
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+|+.|.|+|.+. .+.++|.|+|
T Consensus 105 ~G~~F~l~I~~~---------~~~f~V~VNg 126 (164)
T 1x50_A 105 PGQFFDLSIRCG---------LDRFKVYANG 126 (164)
T ss_dssp TTSEEEEEEEEC---------SSEEEEEESS
T ss_pred CCCeEEEEEEEc---------CCEEEEEECC
Confidence 588888888765 3567888877
No 10
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=43.88 E-value=43 Score=26.14 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=15.4
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+|+.|.|.|.+. .+.+||.|+|
T Consensus 85 ~G~~F~l~I~~~---------~~~f~V~vng 106 (138)
T 3zxf_A 85 RGQPFEVLIIAS---------DDGFKAVVGD 106 (138)
T ss_dssp TTEEEEEEEEEC---------SSEEEEEETT
T ss_pred CCCEEEEEEEEc---------CCeEEEEECC
Confidence 577888877665 3567777766
No 11
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=42.53 E-value=90 Score=23.70 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.8
Q ss_pred CcceEEEEEecCCCee--eeeeeeEEEeeeCCCCCCCCCCcceeeEEEee
Q psy9229 170 KSFTLTITISSSPPQV--TTYSKAIKVTVDGPREPRSKTRKSFTLTITIS 217 (258)
Q Consensus 170 KsftltItv~t~PPqv--At~~~AIKVtvDGPRepRs~r~KSf~lTItis 217 (258)
.+|++-|.+.--|... .+--..++|+|.|||. +=+...+...+-++
T Consensus 3 ~tytVPv~~~Nlp~~~~v~~~~~tV~V~v~G~r~--~~~~~di~A~VDLs 50 (90)
T 3lyw_A 3 PTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNP--SINVNELFAYVDLS 50 (90)
T ss_dssp CEEEEEEEEESCCTTEEECSCCCEEEEEEEECCT--TCCSTTCEEEEECT
T ss_pred ceEEeeEEEeeCCCCcEEecCCCEEEEEEEecCc--CCChHHEEEEEECc
Confidence 5788888888777644 2333588999999994 44445555555554
No 12
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=34.67 E-value=71 Score=28.84 Aligned_cols=13 Identities=54% Similarity=0.741 Sum_probs=10.3
Q ss_pred CCCcceEEEEEec
Q psy9229 168 RGKSFTLTITISS 180 (258)
Q Consensus 168 RGKsftltItv~t 180 (258)
+|+.|.|+|.+.-
T Consensus 112 ~G~~F~l~I~~~~ 124 (343)
T 2wsu_A 112 REKPFVLVIVIQS 124 (343)
T ss_dssp TTCEEEEEEEECS
T ss_pred CCCcEEEEEEEcC
Confidence 5899999887754
No 13
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.94 E-value=25 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=15.8
Q ss_pred eecceeeeecCCCCCcceEE
Q psy9229 156 KFNDLRFVGRSGRGKSFTLT 175 (258)
Q Consensus 156 ~FnDLRFvGRSGRGKsftlt 175 (258)
+-+-+-++|.+|.||+.-+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45567899999999987554
No 14
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=32.39 E-value=24 Score=31.68 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=22.3
Q ss_pred eeeecCCCCCcceEEEEEecCCCeeeeeeee
Q psy9229 161 RFVGRSGRGKSFTLTITISSSPPQVTTYSKA 191 (258)
Q Consensus 161 RFvGRSGRGKsftltItv~t~PPqvAt~~~A 191 (258)
||-| ||.|+.|+|+|. .-.|=+.|+|=|+
T Consensus 197 RFSg-S~sgt~ftLtIs-~lq~eD~A~YYC~ 225 (254)
T 4f9p_D 197 RFSG-SGSGTEFTLSIN-SVETEDFGIYFCQ 225 (254)
T ss_dssp TCEE-ECCTTEEEEEEE-SCCTTCCEEEEEE
T ss_pred CEEe-eeeCCEEEEEEC-CCCHHHCEEEEEe
Confidence 7766 789999998876 2345588999995
No 15
>1ww7_A Galectin; carbohydrate recognition domain,X-RAY crystallographic analysis, sulfate ION, sugar binding protein; 1.90A {Agrocybe cylindracea} PDB: 1ww4_A* 1ww6_A* 1ww5_A 2zgl_A 2zgm_A* 2zgn_A* 3afk_A* 3m3c_A* 3m3q_A* 2zgk_A 2zgs_A 2zgq_A 2zgr_A 3m3e_A* 2zgo_A* 3m3o_A* 2zgp_A 2zgu_A 2zgt_A
Probab=32.35 E-value=1.3e+02 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=17.0
Q ss_pred CCcceEEEEeeecCCCeEEEEecc
Q psy9229 111 LPVAFKVVALGDVMDGTIVTIRAG 134 (258)
Q Consensus 111 LP~~FkVvalg~v~DGt~Vtv~AG 134 (258)
++++|.+-..+.+..|..|+|+.-
T Consensus 10 p~vP~~~~L~~gL~~G~~I~I~G~ 33 (160)
T 1ww7_A 10 ISAGASVDLAAPVTTGDIVTFFSS 33 (160)
T ss_dssp EETTEEEEEEEEECTTCEEEEEES
T ss_pred CCCCceEeCCCCCcCCCEEEEEeE
Confidence 356677666677878888887754
No 16
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=32.12 E-value=11 Score=29.28 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.3
Q ss_pred eeeeecCCCCCcceEE
Q psy9229 160 LRFVGRSGRGKSFTLT 175 (258)
Q Consensus 160 LRFvGRSGRGKsftlt 175 (258)
+-++|.||.|||-.+.
T Consensus 12 ~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999997665
No 17
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=31.04 E-value=12 Score=32.05 Aligned_cols=16 Identities=44% Similarity=0.627 Sum_probs=12.2
Q ss_pred eeeeecCCCCCcceEE
Q psy9229 160 LRFVGRSGRGKSFTLT 175 (258)
Q Consensus 160 LRFvGRSGRGKsftlt 175 (258)
+=+||+||.|||=-|-
T Consensus 5 v~lvG~nGaGKSTLln 20 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVN 20 (270)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3589999999984433
No 18
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=30.34 E-value=17 Score=26.89 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=14.5
Q ss_pred hhcccceeecceeeeecCCCCCcc
Q psy9229 149 VMKNQVAKFNDLRFVGRSGRGKSF 172 (258)
Q Consensus 149 ~mknqvA~FnDLRFvGRSGRGKsf 172 (258)
.|.+...+--.+-++|.+|.|||=
T Consensus 2 ~m~~~~~~~~ki~v~G~~~~GKSs 25 (186)
T 2bme_A 2 HMSETYDFLFKFLVIGNAGTGKSC 25 (186)
T ss_dssp --CCCCSEEEEEEEEESTTSSHHH
T ss_pred CcccccccceEEEEECCCCCCHHH
Confidence 344443332345799999999983
No 19
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.14 E-value=13 Score=29.65 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=12.6
Q ss_pred eeeeecCCCCCcceEE
Q psy9229 160 LRFVGRSGRGKSFTLT 175 (258)
Q Consensus 160 LRFvGRSGRGKsftlt 175 (258)
+-++|.||.|||=.+.
T Consensus 7 i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLK 22 (198)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4689999999985444
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.04 E-value=13 Score=29.49 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=13.4
Q ss_pred ceeeeecCCCCCcceEE
Q psy9229 159 DLRFVGRSGRGKSFTLT 175 (258)
Q Consensus 159 DLRFvGRSGRGKsftlt 175 (258)
=+-++|.||.|||=.+.
T Consensus 22 i~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999995544
No 21
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=28.40 E-value=14 Score=28.29 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=11.3
Q ss_pred eeeeecCCCCCcc
Q psy9229 160 LRFVGRSGRGKSF 172 (258)
Q Consensus 160 LRFvGRSGRGKsf 172 (258)
+-++|++|.|||=
T Consensus 29 v~lvG~~g~GKST 41 (210)
T 1pui_A 29 VAFAGRSNAGKSS 41 (210)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5799999999983
No 22
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=28.30 E-value=13 Score=35.11 Aligned_cols=108 Identities=24% Similarity=0.310 Sum_probs=56.6
Q ss_pred hhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEee-e-cCCCeEEEEeccCCCcc-ceeccc---hhh----hh
Q psy9229 81 LSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALG-D-VMDGTIVTIRAGNDENY-CAELRN---CTA----VM 150 (258)
Q Consensus 81 l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg-~-v~DGt~Vtv~AGNdEn~-~aeLRN---~~a----~m 150 (258)
|+...|.-+-..+|.+-+. ||..-|.|-.+ | + ..+|..++|+-=..... ..+|-+ ... .+
T Consensus 184 i~~~~g~~i~~~~P~~~~~-lp~g~Rv~~~~---------~~~~~~~G~~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l 253 (511)
T 2oap_1 184 LTQRSGKHISIANPIVDAT-LPDGSRLQATF---------GTEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYL 253 (511)
T ss_dssp HHHHTTCCCBTTBCEEEEE-ETTTEEEEEEC---------SSSSCTTCSEEEEEECCCCCCCHHHHHHTTSSCHHHHHHH
T ss_pred HHHHcCCCccccCcceeee-cCCCeEEEEEE---------CCCccCCCCEEEEEecCCCCCChhhHHhcCCCCHHHHHHH
Confidence 3344444444456654433 45444444332 2 2 35789999986554432 122211 111 11
Q ss_pred cccceeecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCC
Q psy9229 151 KNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRS 204 (258)
Q Consensus 151 knqvA~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs 204 (258)
.-.+.+-.-+=++|.+|.||+=+|..-..--+|.- -.||++||.|-+-
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~------giitied~~E~~~ 301 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA------KVVSIEDTREIKL 301 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC------CEEEEESSCCCCC
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC------CEEEEcCcccccC
Confidence 11122222367999999999977765444445532 2478889887653
No 23
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=27.89 E-value=18 Score=28.68 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=11.8
Q ss_pred eeeeecCCCCCcceE
Q psy9229 160 LRFVGRSGRGKSFTL 174 (258)
Q Consensus 160 LRFvGRSGRGKsftl 174 (258)
+-++|.||.|||=.+
T Consensus 25 v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 25 VALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEECCTTSCTHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999998533
No 24
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=27.69 E-value=14 Score=29.96 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.7
Q ss_pred eeeeecCCCCCcceEE
Q psy9229 160 LRFVGRSGRGKSFTLT 175 (258)
Q Consensus 160 LRFvGRSGRGKsftlt 175 (258)
+-++|.||.|||=.+.
T Consensus 26 ~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIK 41 (218)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5689999999985444
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=26.73 E-value=17 Score=31.43 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+-++|.||.|||=-|.+-.--.+|.-. .|.+||
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~p~~G------~I~~~G 69 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILKPSSG------RILFDN 69 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSEE------EEEETT
T ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCe------EEEECC
Confidence 346899999999666544444566543 355666
No 26
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=25.73 E-value=29 Score=25.67 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=8.1
Q ss_pred eeeeecCCCCCcceE
Q psy9229 160 LRFVGRSGRGKSFTL 174 (258)
Q Consensus 160 LRFvGRSGRGKsftl 174 (258)
+-++|.+|.||+=-+
T Consensus 11 i~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEECCCCC------
T ss_pred EEEECCCCCCHHHHH
Confidence 579999999998543
No 27
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.44 E-value=12 Score=33.24 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=28.4
Q ss_pred ceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCC
Q psy9229 159 DLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRS 204 (258)
Q Consensus 159 DLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs 204 (258)
-+=++|.||.|||=.+.+-..-.+|+ .-.|+++|++|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~------~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFD------QRLITIEDVPELFL 216 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTT------SCEEEEESSSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC------ceEEEECCccccCc
Confidence 34589999999997666555555553 34678899988664
No 28
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=25.28 E-value=19 Score=27.12 Aligned_cols=13 Identities=46% Similarity=0.629 Sum_probs=11.2
Q ss_pred eeeeecCCCCCcc
Q psy9229 160 LRFVGRSGRGKSF 172 (258)
Q Consensus 160 LRFvGRSGRGKsf 172 (258)
+-++|-+|.|||-
T Consensus 11 i~l~G~~GsGKST 23 (175)
T 1knq_A 11 YVLMGVSGSGKSA 23 (175)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEEcCCCCCHHH
Confidence 6789999999985
No 29
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=25.11 E-value=27 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=19.8
Q ss_pred hhcccceeecceeeeecCCCCCcceEEE
Q psy9229 149 VMKNQVAKFNDLRFVGRSGRGKSFTLTI 176 (258)
Q Consensus 149 ~mknqvA~FnDLRFvGRSGRGKsftltI 176 (258)
++...+.+=.=+=++|.||.|||-.+.+
T Consensus 17 ~l~ggi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 17 LLGGGIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp HTTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HhcCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 4445555555667899999999976543
No 30
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.94 E-value=18 Score=29.87 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=17.3
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeee
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVT 186 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvA 186 (258)
+-++|.||.|||=-|.+-.--.+|.-.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 346899999999555543334456433
No 31
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=24.71 E-value=17 Score=28.99 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.9
Q ss_pred eeeecCCCCCcceEE
Q psy9229 161 RFVGRSGRGKSFTLT 175 (258)
Q Consensus 161 RFvGRSGRGKsftlt 175 (258)
=++|.+|.|||-.+.
T Consensus 4 ~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 4 IITGEPGVGKTTLVK 18 (178)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 479999999996543
No 32
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=24.71 E-value=22 Score=37.25 Aligned_cols=13 Identities=62% Similarity=0.792 Sum_probs=10.9
Q ss_pred eeeeecCCCCCcc
Q psy9229 160 LRFVGRSGRGKSF 172 (258)
Q Consensus 160 LRFvGRSGRGKsf 172 (258)
+=+|||||.|||=
T Consensus 1108 vaIVG~SGsGKST 1120 (1321)
T 4f4c_A 1108 LALVGPSGCGKST 1120 (1321)
T ss_dssp EEEECSTTSSTTS
T ss_pred EEEECCCCChHHH
Confidence 4579999999993
No 33
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=24.29 E-value=18 Score=28.11 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=11.6
Q ss_pred eeeeecCCCCCcceE
Q psy9229 160 LRFVGRSGRGKSFTL 174 (258)
Q Consensus 160 LRFvGRSGRGKsftl 174 (258)
+-++|-||.|||=-+
T Consensus 8 i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999997433
No 34
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=24.03 E-value=18 Score=27.69 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=12.5
Q ss_pred eeeeecCCCCCcceEE
Q psy9229 160 LRFVGRSGRGKSFTLT 175 (258)
Q Consensus 160 LRFvGRSGRGKsftlt 175 (258)
+=++|-||.|||=.+.
T Consensus 10 i~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVR 25 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 4689999999985443
No 35
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=23.61 E-value=19 Score=27.31 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=11.4
Q ss_pred eeeecCCCCCcceE
Q psy9229 161 RFVGRSGRGKSFTL 174 (258)
Q Consensus 161 RFvGRSGRGKsftl 174 (258)
-++|.+|.|||=-|
T Consensus 30 ~i~G~NGsGKStll 43 (182)
T 3kta_A 30 AIVGANGSGKSNIG 43 (182)
T ss_dssp EEEECTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 57999999998543
No 36
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=23.55 E-value=64 Score=26.31 Aligned_cols=34 Identities=38% Similarity=0.636 Sum_probs=22.2
Q ss_pred CCCCCcceE----EEEeeecC-CCeEE--EEeccCCCccce
Q psy9229 108 NKTLPVAFK----VVALGDVM-DGTIV--TIRAGNDENYCA 141 (258)
Q Consensus 108 NKtLP~~Fk----Vvalg~v~-DGt~V--tv~AGNdEn~~a 141 (258)
+-.||..|+ ||+-|..- ||+.+ .|.|.-||||..
T Consensus 72 ~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaKhdekY~p 112 (136)
T 1j6q_A 72 DDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAKHDENYMP 112 (136)
T ss_dssp CSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECCC------
T ss_pred CCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 446777775 99999884 89876 699999999985
No 37
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=22.99 E-value=20 Score=27.12 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=10.7
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+-++|++|.|||
T Consensus 7 i~ivG~~g~GKS 18 (172)
T 2gj8_A 7 VVIAGRPNAGKS 18 (172)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 468999999998
No 38
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=22.92 E-value=20 Score=33.39 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=38.3
Q ss_pred CCCeEEEEeccCCCccc---eeccchhhhhcccceeeccee----------eeecCCCCCcceEEEEEecCCCeeeeeee
Q psy9229 124 MDGTIVTIRAGNDENYC---AELRNCTAVMKNQVAKFNDLR----------FVGRSGRGKSFTLTITISSSPPQVTTYSK 190 (258)
Q Consensus 124 ~DGt~Vtv~AGNdEn~~---aeLRN~~a~mknqvA~FnDLR----------FvGRSGRGKsftltItv~t~PPqvAt~~~ 190 (258)
=.|+.+.+...++..|. ++- ...-.++|--.+|.|++ .+|+||.|||=-+.|-.--.+|+-..
T Consensus 93 ~~~~~l~i~~~~~~e~~~~~~~~-~~mi~~~nl~~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~--- 168 (460)
T 2npi_A 93 VEETELLWKCPDLTTNTITVKPN-HTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY--- 168 (460)
T ss_dssp SSSCEEEEECTTCCSSSCCCEEC-CTHHHHHHHHHHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCC---
T ss_pred EcceEEEEecCCccceeecCCCC-cchhhhhhhhehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCc---
Confidence 46677777766665555 222 12233444444554444 58999999996555433333333210
Q ss_pred eEEEeeeCC
Q psy9229 191 AIKVTVDGP 199 (258)
Q Consensus 191 AIKVtvDGP 199 (258)
-.|.+||.
T Consensus 169 -~pI~vdg~ 176 (460)
T 2npi_A 169 -QPLYINLD 176 (460)
T ss_dssp -CCEEEECC
T ss_pred -eeEEEcCC
Confidence 12677883
No 39
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=22.26 E-value=23 Score=26.78 Aligned_cols=12 Identities=50% Similarity=0.911 Sum_probs=10.5
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+-++|++|.|||
T Consensus 5 v~ivG~~gvGKS 16 (184)
T 2zej_A 5 LMIVGNTGSGKT 16 (184)
T ss_dssp EEEESCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 468999999997
No 40
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.18 E-value=20 Score=29.78 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=17.2
Q ss_pred eeeeecCCCCCcceEEEEEecCCCee
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQV 185 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqv 185 (258)
+-.+|.||.|||=-|.+-.--.+|.-
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 35689999999966554333445543
No 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=22.15 E-value=21 Score=26.60 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=10.6
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+-++|++|.|||
T Consensus 6 v~lvG~~gvGKS 17 (165)
T 2wji_A 6 IALIGNPNVGKS 17 (165)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 468999999997
No 42
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=21.72 E-value=21 Score=30.01 Aligned_cols=32 Identities=38% Similarity=0.495 Sum_probs=21.1
Q ss_pred eeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 161 RFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 161 RFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
=.+|.||.|||=-|.+-.--.+|+-. .|.+||
T Consensus 39 ~i~G~nGsGKSTLl~~l~Gl~~p~~G------~I~i~g 70 (247)
T 2ff7_A 39 GIVGRSGSGKSTLTKLIQRFYIPENG------QVLIDG 70 (247)
T ss_dssp EEECSTTSSHHHHHHHHTTSSCCSEE------EEEETT
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCc------EEEECC
Confidence 46899999999766654444556533 355666
No 43
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=21.39 E-value=26 Score=31.50 Aligned_cols=29 Identities=45% Similarity=0.710 Sum_probs=20.7
Q ss_pred eeeecCCCCCcceEEEEEecCCCeeeeeeee
Q psy9229 161 RFVGRSGRGKSFTLTITISSSPPQVTTYSKA 191 (258)
Q Consensus 161 RFvGRSGRGKsftltItv~t~PPqvAt~~~A 191 (258)
||-| ||.|..|+|+|.- -.|=+.|+|-|+
T Consensus 61 RFSg-S~Sgt~ftLtIs~-lq~eD~A~YyC~ 89 (259)
T 4f9l_D 61 RFSG-SGSATGFTLTISS-LQPEDIATYYCQ 89 (259)
T ss_dssp TEEE-EEETTEEEEEEES-CCGGGCEEEEEE
T ss_pred CEEe-eccCCeEEEEEcc-cChhhCEEEEEe
Confidence 6665 7889999998862 234477888775
No 44
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=21.23 E-value=22 Score=27.61 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=11.9
Q ss_pred eeeecCCCCCcceEE
Q psy9229 161 RFVGRSGRGKSFTLT 175 (258)
Q Consensus 161 RFvGRSGRGKsftlt 175 (258)
-++|-||.||+=.+.
T Consensus 5 ~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 5 VISGPSGTGKSTLLK 19 (186)
T ss_dssp EEESSSSSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 478999999985544
No 45
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=21.10 E-value=22 Score=29.58 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=20.9
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+-.+|.||.|||=-|.+-.--.+|.-. .|.+||
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~p~~G------~I~~~g 66 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDKPTEG------EVYIDN 66 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEE------EEEETT
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCce------EEEECC
Confidence 356899999999555444344556543 355666
No 46
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.08 E-value=22 Score=29.61 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=12.1
Q ss_pred eeeecCCCCCcceEEE
Q psy9229 161 RFVGRSGRGKSFTLTI 176 (258)
Q Consensus 161 RFvGRSGRGKsftltI 176 (258)
=.+|.||.|||=-|.+
T Consensus 35 ~i~G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 35 AVVGQVGCGKSSLLSA 50 (237)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 4689999999855443
No 47
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=21.01 E-value=46 Score=27.28 Aligned_cols=34 Identities=35% Similarity=0.593 Sum_probs=26.8
Q ss_pred CCCCCcceE----EEEeeec-CCCeEE--EEeccCCCccce
Q psy9229 108 NKTLPVAFK----VVALGDV-MDGTIV--TIRAGNDENYCA 141 (258)
Q Consensus 108 NKtLP~~Fk----Vvalg~v-~DGt~V--tv~AGNdEn~~a 141 (258)
+-.||..|+ ||+-|.. +||+.+ .|.|.-||||..
T Consensus 67 ~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLAKhdekYmp 107 (136)
T 1sr3_A 67 EGILPDLFREGQGVVVQGELEKGNHILAKEVLAKHDENYTP 107 (136)
T ss_dssp ESCCCTTCCTTSEEEEEEEECSSSEEEESSCBCCSCCCCCC
T ss_pred CCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 346677775 9999988 588776 489999999985
No 48
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=20.86 E-value=23 Score=27.06 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=11.8
Q ss_pred eeeeecCCCCCcceE
Q psy9229 160 LRFVGRSGRGKSFTL 174 (258)
Q Consensus 160 LRFvGRSGRGKsftl 174 (258)
+-++|-||.|||-.+
T Consensus 9 i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 9 IVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999998543
No 49
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=20.73 E-value=15 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=20.6
Q ss_pred cCCCccccCCCCCcceE---EEEeeecC
Q psy9229 100 VLPPHWRSNKTLPVAFK---VVALGDVM 124 (258)
Q Consensus 100 ~LP~HWR~NKtLP~~Fk---Vvalg~v~ 124 (258)
-.|+||||.++|..-+| |+++..|-
T Consensus 86 ~~~s~~~~~~~l~~~l~~~~i~gi~giD 113 (379)
T 1a9x_B 86 LIASNFRNTEDLSSYLKRHNIVAIADID 113 (379)
T ss_dssp SCCCCTTCCSCHHHHHHHTTCEEEESSC
T ss_pred CCCCcccccCCHHHHHHHCCCccccCCC
Confidence 46999999999987774 88887663
No 50
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=20.68 E-value=63 Score=28.95 Aligned_cols=84 Identities=23% Similarity=0.197 Sum_probs=44.5
Q ss_pred eEEEEeeecCCCeEEEEeccCCCccce-eccchhhhhccccee-ecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeE
Q psy9229 115 FKVVALGDVMDGTIVTIRAGNDENYCA-ELRNCTAVMKNQVAK-FNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192 (258)
Q Consensus 115 FkVvalg~v~DGt~Vtv~AGNdEn~~a-eLRN~~a~mknqvA~-FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AI 192 (258)
|+|-++. ..+|..|+++--+.+...- +| +...++++-..+ -.=+=++|.+|.|||=+|.+-+.--+|. ....
T Consensus 81 ~Rv~~~~-~~~g~~~~iR~~~~~~~~l~~l-g~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~----~~~~ 154 (356)
T 3jvv_A 81 FRVNAFN-QNRGAGAVFRTIPSKVLTMEEL-GMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT----KYHH 154 (356)
T ss_dssp EEEEEEE-ETTEEEEEEEEECCSCCCTTTT-TCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH----CCCE
T ss_pred EEEEEEe-eCCCcEEEEEECCCCCCCHHHc-CChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC----CCcE
Confidence 6666665 4578888888665543221 22 112233332221 1235689999999998776433322221 0112
Q ss_pred EEeeeCCCCCCC
Q psy9229 193 KVTVDGPREPRS 204 (258)
Q Consensus 193 KVtvDGPRepRs 204 (258)
-+|+.-|.|-..
T Consensus 155 i~t~ed~~e~~~ 166 (356)
T 3jvv_A 155 ILTIEDPIEFVH 166 (356)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEccCcHHhhh
Confidence 256666666543
No 51
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=20.57 E-value=25 Score=26.73 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.2
Q ss_pred eeeeecCCCCCcceE
Q psy9229 160 LRFVGRSGRGKSFTL 174 (258)
Q Consensus 160 LRFvGRSGRGKsftl 174 (258)
+-++|-||.|||=.+
T Consensus 12 i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 568999999998543
No 52
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=20.56 E-value=23 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=16.7
Q ss_pred ccceeecceeeeecCCCCCcceEE
Q psy9229 152 NQVAKFNDLRFVGRSGRGKSFTLT 175 (258)
Q Consensus 152 nqvA~FnDLRFvGRSGRGKsftlt 175 (258)
..+.+=.=+=++|.+|.|||-.+.
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHH
Confidence 344444455689999999986544
No 53
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A*
Probab=20.49 E-value=1.2e+02 Score=25.28 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=34.4
Q ss_pred CCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCC-CCCcceeeEEEeecCCCceeeeccceeeeee
Q psy9229 167 GRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRS-KTRKSFTLTITISSSPPQVTTYSKAIKVTVD 235 (258)
Q Consensus 167 GRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs-~r~KSf~lTItisTSPPqvat~~~AIKVtVD 235 (258)
-+|+.|+|.|.+.. ..+||.|+|=..--- +|-....-.+++....-|++..+.+++|+|=
T Consensus 94 ~~G~~F~i~I~~~~---------~~F~V~vNg~~~~~F~hR~~~~~~~i~y~~~~~~~~~~s~~l~v~~~ 154 (164)
T 2r0h_A 94 GDRRDPSITIFDHP---------DRYQIMIDYKTVYYYKKRLEGRCEKVSYKINEGQTPPFSDVLGVTVL 154 (164)
T ss_dssp CSCSSCEEEEEECS---------SEEEEEETTEEEEEEECCSCSCEEEEEEEECTTCCCSSCSEEEEEEE
T ss_pred CCCCcEEEEEEEeC---------CEEEEEECCEeEEEecCcCCCCcceEEEEecCccccccccceeeeeh
Confidence 36889998887764 456666665432221 2222222345555555666667777777764
No 54
>1yjd_C TP44, T-cell-specific surface glycoprotein CD28; IGSF, CD28 homodimer, immune system-signaling protein comple; HET: NAG; 2.70A {Homo sapiens} SCOP: b.1.1.1
Probab=20.37 E-value=3.2e+02 Score=21.53 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=50.2
Q ss_pred ceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEe--ccCCCccceeccchhhhhcccceeecceeeeecCCCCCcc
Q psy9229 95 QFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR--AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSF 172 (258)
Q Consensus 95 ~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~--AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsf 172 (258)
.+-|+.-=+|- +.-|++.-+-..|.+..+.+. .+|.+| ++.--+..||.|. ..+++|
T Consensus 21 tL~C~y~~~~~------~~e~~~~WYrq~pg~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~s-~s~~s~ 79 (140)
T 1yjd_C 21 NLSCKYSYNLF------SREFRASLHKGLDSAVEVCVVYGNYSQQL--------------QVYSKTGFNCDGK-LGNESV 79 (140)
T ss_dssp EEEEEESCCSS------CSEEEEEEEESTTCCCEEEEEEEESSSCC--------------EEECSSSCEEEEE-ECSSEE
T ss_pred EEEEECCCCCc------cceeEEEEEecCCCCceEEEEecCccccc--------------cccCCCCceEEee-ccCCEE
Confidence 46687643331 123788888777778888877 455543 1111124567775 678999
Q ss_pred eEEEEEecCCCeeeeeeeeEEE
Q psy9229 173 TLTITISSSPPQVTTYSKAIKV 194 (258)
Q Consensus 173 tltItv~t~PPqvAt~~~AIKV 194 (258)
+|+|.= ..+-+-|.|-+|+-+
T Consensus 80 sLtIs~-l~~~Dta~YfCa~~~ 100 (140)
T 1yjd_C 80 TFYLQN-LYVNQTDIYFCKIEV 100 (140)
T ss_dssp EEEEES-CCGGGCEEEEEEEEE
T ss_pred EEEECC-CChhhCEEEEEEEEe
Confidence 998863 345688999998876
No 55
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=20.28 E-value=20 Score=27.36 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.4
Q ss_pred ccchhhhhcccceee-----cceeeeecCCCCCcceEE
Q psy9229 143 LRNCTAVMKNQVAKF-----NDLRFVGRSGRGKSFTLT 175 (258)
Q Consensus 143 LRN~~a~mknqvA~F-----nDLRFvGRSGRGKsftlt 175 (258)
.+.+...+++.+..| .-+=++|.+|.||+..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 334444444444333 347789999999997553
No 56
>1g86_A Charcot-leyden crystal protein; beta barrel, hydrolase; 1.80A {Homo sapiens} SCOP: b.29.1.3 PDB: 1lcl_A 1qkq_A* 1hdk_A*
Probab=20.18 E-value=68 Score=25.11 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=17.1
Q ss_pred CCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 168 RGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+|+.|.|+|.+. ...++|.|+|
T Consensus 85 ~G~~F~l~I~~~---------~~~f~V~Vng 106 (142)
T 1g86_A 85 DGQEFELSISVL---------PDKYQVMVNG 106 (142)
T ss_dssp TTCCEEEEEEEC---------SSEEEEEETT
T ss_pred CCCcEEEEEEeC---------CCEEEEEECC
Confidence 589999988765 3567888877
No 57
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=20.12 E-value=25 Score=27.33 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.9
Q ss_pred eeeeecCCCCCcc
Q psy9229 160 LRFVGRSGRGKSF 172 (258)
Q Consensus 160 LRFvGRSGRGKsf 172 (258)
+=.+|.||.|||-
T Consensus 9 i~i~G~~GsGKST 21 (211)
T 3asz_A 9 IGIAGGTASGKTT 21 (211)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999984
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=20.10 E-value=33 Score=28.19 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=20.1
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeee
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTY 188 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~ 188 (258)
+=.+|.||.|||--|.+-.-- +|.-..+
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 457899999999877765545 6654444
Done!