Query psy9229
Match_columns 258
No_of_seqs 109 out of 153
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 22:12:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eaqa_ b.2.5.6 (A:) Acute mye 100.0 1.6E-80 1.2E-84 504.0 9.4 124 76-199 1-124 (124)
2 d1eaqa_ b.2.5.6 (A:) Acute mye 99.7 2.4E-18 1.7E-22 138.7 6.0 99 131-237 14-124 (124)
3 g1f2t.1 c.37.1.12 (A:,B:) Rad5 59.5 1.4 0.0001 33.2 1.1 31 142-173 7-39 (292)
4 d1mv5a_ c.37.1.12 (A:) Multidr 41.8 3 0.00022 33.8 0.5 25 160-184 31-55 (242)
5 d1a9xb1 c.8.3.1 (B:1502-1652) 37.9 2.3 0.00017 33.4 -0.9 25 100-124 86-113 (151)
6 d1bifa1 c.37.1.7 (A:37-249) 6- 37.0 3.7 0.00027 29.5 0.2 12 161-172 6-17 (213)
7 d1ml8a_ d.227.1.2 (A:) Hypothe 34.7 8.2 0.0006 27.4 1.9 64 150-217 1-92 (134)
8 d1vmfa_ d.273.1.1 (A:) Hypothe 33.8 9.3 0.00067 29.1 2.1 31 173-203 97-127 (136)
9 d1upta_ c.37.1.8 (A:) ADP-ribo 31.9 5 0.00037 27.4 0.2 12 160-171 8-19 (169)
10 d2pmka1 c.37.1.12 (A:467-707) 31.7 5 0.00037 32.5 0.2 33 160-198 32-64 (241)
11 d1r8sa_ c.37.1.8 (A:) ADP-ribo 31.0 5.3 0.00039 27.2 0.2 12 161-172 4-15 (160)
12 d1lcla_ b.29.1.3 (A:) Charcot- 29.2 46 0.0033 24.4 5.4 21 111-133 3-23 (141)
13 d2nn8a1 b.29.1.3 (A:114-250) G 29.0 67 0.0049 23.3 6.3 34 112-145 2-38 (137)
14 d1f6ba_ c.37.1.8 (A:) SAR1 {Ch 28.7 6.2 0.00046 27.3 0.3 13 160-172 16-28 (186)
15 d1jj7a_ c.37.1.12 (A:) Peptide 28.2 6.3 0.00046 32.0 0.2 27 159-185 42-68 (251)
16 d1w1wa_ c.37.1.12 (A:) Smc hea 28.1 7.5 0.00055 30.7 0.7 30 142-171 7-39 (427)
17 d1np6a_ c.37.1.10 (A:) Molybdo 27.5 6.8 0.0005 27.0 0.3 12 160-171 5-16 (170)
18 d3b60a1 c.37.1.12 (A:329-581) 26.9 7.1 0.00052 31.7 0.3 33 160-198 44-76 (253)
19 d2hyda1 c.37.1.12 (A:324-578) 26.0 7.3 0.00053 31.8 0.2 27 159-185 46-72 (255)
20 d2pi2e1 b.40.4.3 (E:3-117) Rep 25.7 52 0.0038 23.7 5.1 76 148-233 13-104 (115)
21 d1pmia_ b.82.1.3 (A:) Phosphom 25.4 14 0.001 32.0 2.1 15 107-121 90-104 (440)
22 d1dqta_ b.1.1.1 (A:) Immunorec 25.4 15 0.0011 25.4 1.8 50 157-207 60-109 (117)
23 d1vmja_ d.273.1.1 (A:) Hypothe 24.2 15 0.0011 28.1 1.7 29 173-201 101-129 (139)
24 d1vmha_ d.273.1.1 (A:) B.subti 24.1 13 0.00093 28.2 1.3 29 173-201 93-121 (129)
25 d1r0wa_ c.37.1.12 (A:) Cystic 21.6 10 0.00075 31.1 0.3 33 160-198 65-97 (281)
26 d2qtvb1 c.37.1.8 (B:24-189) SA 21.4 12 0.00088 24.9 0.6 12 161-172 4-15 (166)
27 d1kkma_ c.91.1.2 (A:) HPr kina 21.4 10 0.00075 29.7 0.3 12 160-171 17-28 (176)
28 d1puia_ c.37.1.8 (A:) Probable 21.1 11 0.0008 26.1 0.3 12 160-171 19-30 (188)
29 d1h65a_ c.37.1.8 (A:) Chloropl 21.0 11 0.00079 29.8 0.3 17 155-172 31-47 (257)
30 d3dhwc1 c.37.1.12 (C:1-240) Me 20.5 11 0.00081 30.6 0.3 28 160-187 34-61 (240)
31 d2cxxa1 c.37.1.8 (A:2-185) GTP 20.5 12 0.00085 26.4 0.4 14 159-172 2-15 (184)
32 d1e69a_ c.37.1.12 (A:) Smc hea 20.2 22 0.0016 27.1 2.0 33 142-174 7-41 (308)
No 1
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=1.6e-80 Score=503.98 Aligned_cols=124 Identities=76% Similarity=1.201 Sum_probs=122.9
Q ss_pred hhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhhhcccce
Q psy9229 76 TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVA 155 (258)
Q Consensus 76 ~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~mknqvA 155 (258)
+|.|+|+|||||||+|+||+|+|++||+|||||||||++||||+||||||||+|||+|||||||||||||++|+||||||
T Consensus 1 ~l~~~l~e~pgelv~t~sP~~lCs~LP~HWRsNKtLp~~Fkvv~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva 80 (124)
T d1eaqa_ 1 SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVA 80 (124)
T ss_dssp CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEE
T ss_pred CHhHHHHhCCCccccCCCCCEEeecCcchhccCCccCcceEEEEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCC
Q psy9229 156 KFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGP 199 (258)
Q Consensus 156 ~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGP 199 (258)
|||||||||||||||||+|||+|+|+|||||+|+||||||||||
T Consensus 81 ~fndLrFvgRSgrgKsFtLTItv~t~PpqVAty~rAIKVTVDGP 124 (124)
T d1eaqa_ 81 RFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGP 124 (124)
T ss_dssp ECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC
T ss_pred cccceEEeccCCCCceEEEEEEEecCCchheeheeeEEEeccCC
Confidence 99999999999999999999999999999999999999999998
No 2
>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.71 E-value=2.4e-18 Score=138.71 Aligned_cols=99 Identities=34% Similarity=0.425 Sum_probs=91.1
Q ss_pred EeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeeeC
Q psy9229 131 IRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 131 v~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvDG 198 (258)
++.|+..-.|..|..+|...|....-|.- -++|--..|...+|. ++...+..|+|.|++.++|
T Consensus 14 v~t~sP~~lCs~LP~HWRsNKtLp~~Fkv-v~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva~fndLrFv---- 88 (124)
T d1eaqa_ 14 VRTDSPNFLSSVLPTHWRSNKTLPIAFKV-VALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFV---- 88 (124)
T ss_dssp EECSSTTEEECCCCSEEETTCCCSSCCEE-EESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEEECSSCEEC----
T ss_pred ccCCCCCEEeecCcchhccCCccCcceEE-EEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccccccceEEe----
Confidence 67899999999999999999999999998 688989999888776 4555667899999999999
Q ss_pred CCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCC
Q psy9229 199 PREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGP 237 (258)
Q Consensus 199 PRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGP 237 (258)
+||||+|||+++|+++++||||++|+||||||||||
T Consensus 89 ---gRSgrgKsFtLTItv~t~PpqVAty~rAIKVTVDGP 124 (124)
T d1eaqa_ 89 ---GRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGP 124 (124)
T ss_dssp ---SCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC
T ss_pred ---ccCCCCceEEEEEEEecCCchheeheeeEEEeccCC
Confidence 899999999999999999999999999999999998
No 3
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=59.48 E-value=1.4 Score=33.20 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=21.5
Q ss_pred eccchhhhhcccceeecc-e-eeeecCCCCCcce
Q psy9229 142 ELRNCTAVMKNQVAKFND-L-RFVGRSGRGKSFT 173 (258)
Q Consensus 142 eLRN~~a~mknqvA~FnD-L-RFvGRSGRGKsft 173 (258)
+|+|.... +|..-.|+. | -++|.+|.|||=-
T Consensus 7 ~i~Nfr~~-~~~~l~f~~~ln~IvG~NGsGKSti 39 (292)
T g1f2t.1 7 TVKNFRSH-SDTVVEFKEGINLIIGQNGSGKSSL 39 (292)
T ss_dssp EEESBTTB-SSEEEECCSEEEEEECCTTSSHHHH
T ss_pred EEECcccc-cCeEEEcCCCeEEEECCCCCCHHHH
Confidence 56776664 565555654 3 5899999999843
No 4
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=41.76 E-value=3 Score=33.77 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=15.9
Q ss_pred eeeeecCCCCCcceEEEEEecCCCe
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQ 184 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPq 184 (258)
+=+||+||.|||=-+.+-.--..|+
T Consensus 31 vaivG~sGsGKSTLl~ll~gl~~p~ 55 (242)
T d1mv5a_ 31 IAFAGPSGGGKSTIFSLLERFYQPT 55 (242)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCC
Confidence 3468999999995444433334454
No 5
>d1a9xb1 c.8.3.1 (B:1502-1652) Carbamoyl phosphate synthetase, small subunit N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.92 E-value=2.3 Score=33.42 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=20.2
Q ss_pred cCCCccccCCCCCcce---EEEEeeecC
Q psy9229 100 VLPPHWRSNKTLPVAF---KVVALGDVM 124 (258)
Q Consensus 100 ~LP~HWR~NKtLP~~F---kVvalg~v~ 124 (258)
..|+|||+.++|..-+ +|+++-+|-
T Consensus 86 ~~pSn~rs~~sL~~~L~~~~IpgI~gID 113 (151)
T d1a9xb1 86 LIASNFRNTEDLSSYLKRHNIVAIADID 113 (151)
T ss_dssp SCCCCTTCCSCHHHHHHHTTCEEEESSC
T ss_pred ccCCcccccCCHHHHHHHcCCccccccC
Confidence 3589999999998765 699987763
No 6
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=36.95 E-value=3.7 Score=29.54 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=10.3
Q ss_pred eeeecCCCCCcc
Q psy9229 161 RFVGRSGRGKSF 172 (258)
Q Consensus 161 RFvGRSGRGKsf 172 (258)
-.+|++|+|||.
T Consensus 6 ~l~GlpgsGKST 17 (213)
T d1bifa1 6 VMVGLPARGKTY 17 (213)
T ss_dssp EEECCTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 368999999986
No 7
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=34.71 E-value=8.2 Score=27.44 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=37.1
Q ss_pred hcccceeecceeeeecCCCCCcceEEEEEec-------CCCee--eee------------------eeeEEEeeeCCCCC
Q psy9229 150 MKNQVAKFNDLRFVGRSGRGKSFTLTITISS-------SPPQV--TTY------------------SKAIKVTVDGPREP 202 (258)
Q Consensus 150 mknqvA~FnDLRFvGRSGRGKsftltItv~t-------~PPqv--At~------------------~~AIKVtvDGPRep 202 (258)
||-.|..=.|+||.|++++|..+. +.. +|.++ +.+ -+-++|+|.|-|.+
T Consensus 1 Mk~~v~~~~~~~~~~~~~~G~~i~----~D~gg~~~gp~P~elllaal~~C~~~~~~~~a~~~~i~~~~~~v~v~~~~~~ 76 (134)
T d1ml8a_ 1 MQARVKWVEGLTFLGESASGHQIL----MDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGRQDVVDCEVKLTSERRE 76 (134)
T ss_dssp CCCEEEEEETTEEEEECTTSCEEE----EETTTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEECC
T ss_pred CeEEEEEeCCcEEEEEcCCCCEEE----EeCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEEEcc
Confidence 666777778999999999997433 322 12222 110 16678888887776
Q ss_pred CCCCC-cceeeEEEee
Q psy9229 203 RSKTR-KSFTLTITIS 217 (258)
Q Consensus 203 Rs~r~-KSf~lTItis 217 (258)
+..++ +.+.+++.+.
T Consensus 77 ~~~~~~~~i~~~~~i~ 92 (134)
T d1ml8a_ 77 ADTRLFTHINLHFIVT 92 (134)
T ss_dssp ---CCEEEEEEEEEEE
T ss_pred cCCcccceEEEEEEEe
Confidence 65433 3444555554
No 8
>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}
Probab=33.84 E-value=9.3 Score=29.12 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=27.8
Q ss_pred eEEEEEecCCCeeeeeeeeEEEeeeCCCCCC
Q psy9229 173 TLTITISSSPPQVTTYSKAIKVTVDGPREPR 203 (258)
Q Consensus 173 tltItv~t~PPqvAt~~~AIKVtvDGPRepR 203 (258)
.++|-|.-...++.+|+.-+.+--||||..|
T Consensus 97 s~tiPv~~G~L~LGtWQ~I~l~E~d~~r~~R 127 (136)
T d1vmfa_ 97 AQTLIISEGRLVLGTWQGVYFCEFDGPRTNR 127 (136)
T ss_dssp EEEEEEETTEECCCTTEEEEEEESSCCCSCE
T ss_pred eEEEEEECCEECccCccEEEEEEccCCCCce
Confidence 5788888888999999999999999999665
No 9
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}
Probab=31.90 E-value=5 Score=27.37 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.7
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+-|||++|.|||
T Consensus 8 I~ivG~~~vGKS 19 (169)
T d1upta_ 8 ILILGLDGAGKT 19 (169)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 459999999997
No 10
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=31.71 E-value=5 Score=32.53 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=20.9
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+=+||+||.|||=-+.+-.--.+|+-. +|.+||
T Consensus 32 vaIvG~sGsGKSTLl~ll~gl~~p~~G------~I~i~g 64 (241)
T d2pmka1 32 IGIVGRSGSGKSTLTKLIQRFYIPENG------QVLIDG 64 (241)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSCCSEE------EEEETT
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCCC------EEEECC
Confidence 567999999999554443334455433 355666
No 11
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}
Probab=31.00 E-value=5.3 Score=27.19 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.1
Q ss_pred eeeecCCCCCcc
Q psy9229 161 RFVGRSGRGKSF 172 (258)
Q Consensus 161 RFvGRSGRGKsf 172 (258)
-++|++|.|||=
T Consensus 4 vlvG~~~vGKSs 15 (160)
T d1r8sa_ 4 LMVGLDAAGKTT 15 (160)
T ss_dssp EEECSTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 389999999973
No 12
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.20 E-value=46 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=10.6
Q ss_pred CCcceEEEEeeecCCCeEEEEec
Q psy9229 111 LPVAFKVVALGDVMDGTIVTIRA 133 (258)
Q Consensus 111 LP~~FkVvalg~v~DGt~Vtv~A 133 (258)
||.+|+. -+....|..|+|+.
T Consensus 3 lP~p~~l--p~gl~~G~~i~i~G 23 (141)
T d1lcla_ 3 LPVPYTE--AASLSTGSTVTIKG 23 (141)
T ss_dssp BCSSEEE--ECCCCTTCEEEEEE
T ss_pred eCEeEec--cCCCCCCCEEEEEE
Confidence 4555532 12356666666654
No 13
>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.04 E-value=67 Score=23.30 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=16.2
Q ss_pred CcceEEEEeeecCCCeEEEEec---cCCCccceeccc
Q psy9229 112 PVAFKVVALGDVMDGTIVTIRA---GNDENYCAELRN 145 (258)
Q Consensus 112 P~~FkVvalg~v~DGt~Vtv~A---GNdEn~~aeLRN 145 (258)
+++|+.-.-+..-.|..++|+. .+.+.++-.|..
T Consensus 2 ~vPf~~~i~~gl~~G~~i~i~G~~~~~~~~F~INl~~ 38 (137)
T d2nn8a1 2 IVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQR 38 (137)
T ss_dssp CSSEEEECTTCCCTTEEEEEEEEECTTCCBEEEEEEE
T ss_pred cCCeEeecCCCCcCCcEEEEEEEECCCCCEEEEEeec
Confidence 4445443334455556665553 233445555543
No 14
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=28.73 E-value=6.2 Score=27.31 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=11.0
Q ss_pred eeeeecCCCCCcc
Q psy9229 160 LRFVGRSGRGKSF 172 (258)
Q Consensus 160 LRFvGRSGRGKsf 172 (258)
+-+||++|.|||-
T Consensus 16 I~lvG~~~vGKTs 28 (186)
T d1f6ba_ 16 LVFLGLDNAGKTT 28 (186)
T ss_dssp EEEEEETTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4599999999973
No 15
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.22 E-value=6.3 Score=31.97 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=18.8
Q ss_pred ceeeeecCCCCCcceEEEEEecCCCee
Q psy9229 159 DLRFVGRSGRGKSFTLTITISSSPPQV 185 (258)
Q Consensus 159 DLRFvGRSGRGKsftltItv~t~PPqv 185 (258)
=+=+||+||+|||--+.+-.--.+|+-
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~~ 68 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPTG 68 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCc
Confidence 345799999999977665544555643
No 16
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.14 E-value=7.5 Score=30.70 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=17.9
Q ss_pred eccchhhhhcccceeecc--e-eeeecCCCCCc
Q psy9229 142 ELRNCTAVMKNQVAKFND--L-RFVGRSGRGKS 171 (258)
Q Consensus 142 eLRN~~a~mknqvA~FnD--L-RFvGRSGRGKs 171 (258)
+|.|...-...+.-.|.| | -++|++|.|||
T Consensus 7 ~l~NFks~~~~~~i~f~~~~l~~i~G~NGsGKS 39 (427)
T d1w1wa_ 7 ELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKS 39 (427)
T ss_dssp EEESCSSCCSEEEEECTTCSEEEEECSTTSSHH
T ss_pred EEeCeeeeCCCEEEeCCCCCEEEEECCCCCCHH
Confidence 345553333233344543 3 58999999999
No 17
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=27.49 E-value=6.8 Score=26.99 Aligned_cols=12 Identities=50% Similarity=0.814 Sum_probs=10.2
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+=|+|-+|.||+
T Consensus 5 i~itG~~GSGKT 16 (170)
T d1np6a_ 5 LAFAAWSGTGKT 16 (170)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEEcCCCCCHH
Confidence 458999999987
No 18
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=26.87 E-value=7.1 Score=31.67 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=21.2
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+=.||.||+|||=-+.+-.--.+|+-. .|.+||
T Consensus 44 iaivG~sGsGKSTLl~ll~gl~~p~~G------~I~i~g 76 (253)
T d3b60a1 44 VALVGRSGSGKSTIASLITRFYDIDEG------HILMDG 76 (253)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEE------EEEETT
T ss_pred EEEECCCCChHHHHHHHHhcccCCCcc------EEEECC
Confidence 456899999999555444444556543 355666
No 19
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=25.97 E-value=7.3 Score=31.84 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=17.4
Q ss_pred ceeeeecCCCCCcceEEEEEecCCCee
Q psy9229 159 DLRFVGRSGRGKSFTLTITISSSPPQV 185 (258)
Q Consensus 159 DLRFvGRSGRGKsftltItv~t~PPqv 185 (258)
=+=.+|+||.|||=-+.+-.--.+|+-
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~~ 72 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVTS 72 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred EEEEECCCCCcHHHHHHHHHhcCCccc
Confidence 345799999999865544333444543
No 20
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=52 Score=23.71 Aligned_cols=76 Identities=28% Similarity=0.399 Sum_probs=45.3
Q ss_pred hhhcccceeecceeeeecC----CCCCcceEE------EEEecCCCeeeeeeeeEEE--eeeCCCCCCCCCCcc--eeeE
Q psy9229 148 AVMKNQVAKFNDLRFVGRS----GRGKSFTLT------ITISSSPPQVTTYSKAIKV--TVDGPREPRSKTRKS--FTLT 213 (258)
Q Consensus 148 a~mknqvA~FnDLRFvGRS----GRGKsftlt------Itv~t~PPqvAt~~~AIKV--tvDGPRepRs~r~KS--f~lT 213 (258)
+.|++.+-| ..|+|||- +.|++|++. |+|.-++|..+.....+-| +|++ ..+ -.-.
T Consensus 13 ~~L~~~~Gk--~V~ivGkV~~v~~~g~~~~~~s~D~~~V~v~l~~~~~~~~~~~vEViG~V~~--------~~sI~~~~~ 82 (115)
T d2pi2e1 13 GMLAQFIDK--PVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTA--------KATILCTSY 82 (115)
T ss_dssp GGGGGSTTC--EEEEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCCCSEEEEEEEECT--------TSCEEEEEE
T ss_pred HHHHhhCCC--eEEEEEEEEEEcCCCCEEEEEcCCCCEEEEEeCCCCCCccCCeEEEEEEECC--------CCcEEEEEE
Confidence 344444433 67999987 679999884 8888777744444444444 3442 122 1222
Q ss_pred EEee--cCCCceeeeccceeee
Q psy9229 214 ITIS--SSPPQVTTYSKAIKVT 233 (258)
Q Consensus 214 Itis--TSPPqvat~~~AIKVt 233 (258)
+.|. +...+...|+++++++
T Consensus 83 ~~fg~~~~~fD~~~yn~lv~l~ 104 (115)
T d2pi2e1 83 VQFKEDSHPFDLGLYNEAVKII 104 (115)
T ss_dssp EECCCSSSCCCHHHHHHHHHHH
T ss_pred EEcCCCccccCHHHHHHHHHHH
Confidence 4444 3446778888887765
No 21
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}
Probab=25.43 E-value=14 Score=32.00 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=11.4
Q ss_pred cCCCCCcceEEEEee
Q psy9229 107 SNKTLPVAFKVVALG 121 (258)
Q Consensus 107 ~NKtLP~~FkVvalg 121 (258)
.+..||--|||++-.
T Consensus 90 ~~~~lP~L~KvLda~ 104 (440)
T d1pmia_ 90 SSKELPFLFKVLSIE 104 (440)
T ss_dssp CSSSCSEEEEEEEES
T ss_pred CCcCCceeeeeeccC
Confidence 456788889988764
No 22
>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.42 E-value=15 Score=25.36 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=29.8
Q ss_pred ecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCCCCC
Q psy9229 157 FNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTR 207 (258)
Q Consensus 157 FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs~r~ 207 (258)
|.+=+|.-..-.+++++|+|. ...+-+-|+|-||+.+...+|..-..|.|
T Consensus 60 ~~~~~~~~~~~~~~~~~L~I~-~l~~~Dsa~YyCa~~~~~~~~~~~~fG~G 109 (117)
T d1dqta_ 60 FLDYPFCSGTFNESRVNLTIQ-GLRAVDTGLYLCKVELMYPPPYFVGMGNG 109 (117)
T ss_dssp CTTCTTEEEEEETTEEEEEEC-SCCGGGCEEEEEEEEEEESSSCEEEECSC
T ss_pred CCCCcEEEEeCCCCEEEEEhh-cCccccCEeEEEEEecCcCCCceeEECCC
Confidence 444344433444567887765 34456889999999876555443333333
No 23
>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}
Probab=24.16 E-value=15 Score=28.11 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=26.5
Q ss_pred eEEEEEecCCCeeeeeeeeEEEeeeCCCC
Q psy9229 173 TLTITISSSPPQVTTYSKAIKVTVDGPRE 201 (258)
Q Consensus 173 tltItv~t~PPqvAt~~~AIKVtvDGPRe 201 (258)
.++|-|.-..+++.+|+.-+.+--||||.
T Consensus 101 s~tipi~~G~L~LGtWQ~I~l~E~dg~r~ 129 (139)
T d1vmja_ 101 EVVIAITDRKMDLGPWEQVFYGEFDGMRP 129 (139)
T ss_dssp EEEEEEETTEECCCTTCEEEEEESSCSSC
T ss_pred eEEEEEECCEECccCCCEEEEEECcCCCc
Confidence 47888889999999999999999999985
No 24
>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=24.08 E-value=13 Score=28.16 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=25.4
Q ss_pred eEEEEEecCCCeeeeeeeeEEEeeeCCCC
Q psy9229 173 TLTITISSSPPQVTTYSKAIKVTVDGPRE 201 (258)
Q Consensus 173 tltItv~t~PPqvAt~~~AIKVtvDGPRe 201 (258)
+++|-|.-...++.+|+.-+.+--||||+
T Consensus 93 s~tiPi~~G~L~LGtWQ~I~l~E~d~~r~ 121 (129)
T d1vmha_ 93 SQQIIIENGKLKLGTWQGIYFTEFDGPRD 121 (129)
T ss_dssp EEEEEEETTEECCCTTEEEEEEESSCSCE
T ss_pred eEEEEEECCEECcCCccEEEEEECcCCce
Confidence 46777888889999999999999999985
No 25
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.56 E-value=10 Score=31.11 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=21.3
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeC
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDG 198 (258)
+=++|+||.|||=.|.+-.--.+|+-. .|.+||
T Consensus 65 vaivG~nGsGKSTLl~~i~Gl~~p~~G------~I~~~g 97 (281)
T d1r0wa_ 65 LAITGSTGSGKTSLLMLILGELEASEG------IIKHSG 97 (281)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSCCSEE------EEECCS
T ss_pred EEEECCCCChHHHHHHHHhCCCcCCCc------EEEECC
Confidence 457999999999655544334455443 456666
No 26
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.43 E-value=12 Score=24.93 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=10.3
Q ss_pred eeeecCCCCCcc
Q psy9229 161 RFVGRSGRGKSF 172 (258)
Q Consensus 161 RFvGRSGRGKsf 172 (258)
-++|++|.|||-
T Consensus 4 ~liG~~nvGKSS 15 (166)
T d2qtvb1 4 LFLGLDNAGKTT 15 (166)
T ss_dssp EEECSTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 489999999974
No 27
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=21.39 E-value=10 Score=29.65 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=10.5
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
+=|.|.||.|||
T Consensus 17 vl~~G~sG~GKS 28 (176)
T d1kkma_ 17 VLITGDSGVGKS 28 (176)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEEeCCCCCHH
Confidence 458999999997
No 28
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}
Probab=21.05 E-value=11 Score=26.12 Aligned_cols=12 Identities=58% Similarity=0.933 Sum_probs=10.6
Q ss_pred eeeeecCCCCCc
Q psy9229 160 LRFVGRSGRGKS 171 (258)
Q Consensus 160 LRFvGRSGRGKs 171 (258)
.-|+|+++.|||
T Consensus 19 I~lvG~~NvGKS 30 (188)
T d1puia_ 19 VAFAGRSNAGKS 30 (188)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458999999998
No 29
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=20.96 E-value=11 Score=29.78 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=12.7
Q ss_pred eeecceeeeecCCCCCcc
Q psy9229 155 AKFNDLRFVGRSGRGKSF 172 (258)
Q Consensus 155 A~FnDLRFvGRSGRGKsf 172 (258)
..+| +-++||+|.|||=
T Consensus 31 ~~l~-I~LvG~tg~GKSS 47 (257)
T d1h65a_ 31 NSLT-ILVMGKGGVGKSS 47 (257)
T ss_dssp CEEE-EEEEESTTSSHHH
T ss_pred CCcE-EEEECCCCCcHHH
Confidence 3445 4589999999983
No 30
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=20.55 E-value=11 Score=30.64 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=18.6
Q ss_pred eeeeecCCCCCcceEEEEEecCCCeeee
Q psy9229 160 LRFVGRSGRGKSFTLTITISSSPPQVTT 187 (258)
Q Consensus 160 LRFvGRSGRGKsftltItv~t~PPqvAt 187 (258)
+=++|.||.|||=.|.+-.--.+|+-..
T Consensus 34 ~~iiG~sGsGKSTLl~~i~Gl~~p~sG~ 61 (240)
T d3dhwc1 34 YGVIGASGAGKSTLIRCVNLLERPTEGS 61 (240)
T ss_dssp EEEEESTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEECCCCCCHHHHHHHHcCCccccCCc
Confidence 4678999999995554444445665544
No 31
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.48 E-value=12 Score=26.44 Aligned_cols=14 Identities=50% Similarity=0.695 Sum_probs=11.6
Q ss_pred ceeeeecCCCCCcc
Q psy9229 159 DLRFVGRSGRGKSF 172 (258)
Q Consensus 159 DLRFvGRSGRGKsf 172 (258)
+.-|||++|.|||=
T Consensus 2 ~I~lvG~~nvGKSs 15 (184)
T d2cxxa1 2 TIIFAGRSNVGKST 15 (184)
T ss_dssp EEEEEEBTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35689999999984
No 32
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.22 E-value=22 Score=27.08 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=21.4
Q ss_pred eccchhhhhcccceeecc-e-eeeecCCCCCcceE
Q psy9229 142 ELRNCTAVMKNQVAKFND-L-RFVGRSGRGKSFTL 174 (258)
Q Consensus 142 eLRN~~a~mknqvA~FnD-L-RFvGRSGRGKsftl 174 (258)
+|+|....-..+.-.|++ | -+||-+|.|||=-|
T Consensus 7 ~I~NFksf~~~~~i~f~~~lnvlvG~NgsGKS~iL 41 (308)
T d1e69a_ 7 YLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNII 41 (308)
T ss_dssp EEESBTTBCSCEEEECCSSEEEEECCTTTCSTHHH
T ss_pred EEECeEEECCCEEEeCCCCeEEEECCCCCcHHHHH
Confidence 456665542224456766 3 68999999998654
Done!