RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9229
         (258 letters)



>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score =  243 bits (621), Expect = 2e-83
 Identities = 94/124 (75%), Positives = 110/124 (88%)

Query: 76  TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 135
           ++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGN 60

Query: 136 DENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVT 195
           DENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+T
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKIT 120

Query: 196 VDGP 199
           VDGP
Sbjct: 121 VDGP 124


>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 27.1 bits (60), Expect = 0.72
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 20 LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKM 67
          LL+D  S   S I  E T G+F    P E+ R  G   +  N  Y K+
Sbjct: 15 LLSD--SANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKL 60


>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 110

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 20 LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKM 67
          LL D        I      G+F    P  + +  G   N     Y K+
Sbjct: 10 LLTD--KDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKL 55


>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues
          331-440 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 142

 Score = 26.7 bits (59), Expect = 1.7
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 39 GDFLSEHPGELVRTEGNTGNLLNDTYSKM 67
           +F    P E+ R  G   N     Y K+
Sbjct: 66 WEFKLSDPDEVARRWGKRKNKPKMNYEKL 94


>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 527

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)

Query: 162 FVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREP 202
           F GR+        T    +SP  VT  + A  +  +   + 
Sbjct: 448 FTGRNDANPE---THAFVTSPEIVTALAIAGTLKFNPETDF 485


>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 102

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 91  TGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIV 129
           TG  QF+   +      +  +P+ F           T+ 
Sbjct: 4   TGEVQFMKPFISEKSSKSLEIPLGF-NEYFPAPFPITVD 41


>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
           1, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 629

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 162 FVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRK 208
           F GR              +SPP V  Y+ A  + +D  +EP     K
Sbjct: 537 FEGRVHPNTRANY----LASPPLVIAYAIAGTIRIDFEKEPLGVNAK 579


>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 99

 Score = 24.6 bits (53), Expect = 6.9
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 7/65 (10%)

Query: 191 AIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTP 250
           A ++TV   +E   K  +  +  + ++ +   +          V  P     +  +    
Sbjct: 4   ARRLTVTSLQETGLKVNQPASFAVQLNGARGVID-------ARVHTPSGAVEECYVSELD 56

Query: 251 LVKFS 255
             K +
Sbjct: 57  SDKHT 61


>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
           N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 24.5 bits (52), Expect = 6.9
 Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 13/81 (16%)

Query: 169 GKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQV----- 223
           G+   L  ++         + K   V  +  +     + + +   +++ S          
Sbjct: 11  GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYW 70

Query: 224 --------TTYSKAIKVTVDG 236
                   T  S+ + +TV+G
Sbjct: 71  CQVEDGGETEISQPVWLTVEG 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,950
Number of extensions: 40901
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 15
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)