Query psy9230
Match_columns 361
No_of_seqs 156 out of 299
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 22:14:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1688|consensus 100.0 9.7E-79 2.1E-83 545.3 15.2 177 8-352 11-187 (188)
2 PF03248 Rer1: Rer1 family; I 100.0 3.3E-78 7.2E-83 541.4 17.0 174 13-350 1-176 (176)
3 COG5249 RER1 Golgi protein inv 100.0 1.1E-67 2.3E-72 466.9 12.0 170 14-350 11-180 (180)
4 PF03248 Rer1: Rer1 family; I 100.0 4.3E-36 9.3E-41 269.9 6.2 120 33-199 36-158 (176)
5 KOG1688|consensus 100.0 8.5E-36 1.8E-40 268.4 7.8 124 24-199 42-167 (188)
6 COG5249 RER1 Golgi protein inv 99.3 1.6E-12 3.6E-17 116.5 3.8 117 34-199 46-162 (180)
7 PF09973 DUF2208: Predicted me 78.4 2.4 5.2E-05 40.8 3.7 30 256-289 7-36 (233)
8 PF09973 DUF2208: Predicted me 59.8 15 0.00032 35.5 4.7 42 154-199 7-48 (233)
9 PF05656 DUF805: Protein of un 22.8 4.2E+02 0.0091 21.5 7.7 93 247-351 8-118 (120)
10 PF12273 RCR: Chitin synthesis 21.0 51 0.0011 28.2 1.2 13 39-51 1-13 (130)
No 1
>KOG1688|consensus
Probab=100.00 E-value=9.7e-79 Score=545.29 Aligned_cols=177 Identities=59% Similarity=1.041 Sum_probs=160.7
Q ss_pred CCCcchHHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCccc
Q psy9230 8 NDSGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWL 87 (361)
Q Consensus 8 ~~~~~~~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l 87 (361)
++.++++.++.++++|+||+||||+|||+..||+++++++++|++||++.|||||||||||||+|||||||||||+||++
T Consensus 11 ~~~a~~v~~~~~~~~~~yQ~yLDr~tPh~~~RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlfiaFLtPk~Dp~~ 90 (188)
T KOG1688|consen 11 GGVASPVKRFFHELSQLYQHYLDRSTPHTAVRWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLFIAFLTPKVDPEL 90 (188)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCchh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhc
Q psy9230 88 DSHTDCTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTL 167 (361)
Q Consensus 88 ~qd~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tf 167 (361)
||
T Consensus 91 ~~------------------------------------------------------------------------------ 92 (188)
T KOG1688|consen 91 QD------------------------------------------------------------------------------ 92 (188)
T ss_pred hc------------------------------------------------------------------------------
Confidence 53
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCccccccccccccc
Q psy9230 168 FDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRR 247 (361)
Q Consensus 168 f~~fDIPVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~~~~~efrpfirr 247 (361)
.|||+.||++.||||||||||
T Consensus 93 -----------------------------------------------------------~~dg~~Lpt~~~dEFrPFIRR 113 (188)
T KOG1688|consen 93 -----------------------------------------------------------ADDGPSLPTRKSDEFRPFIRR 113 (188)
T ss_pred -----------------------------------------------------------ccCCCCCCCCCccccchHHHc
Confidence 134455666667777777777
Q ss_pred CcchhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHH
Q psy9230 248 LPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKR 327 (361)
Q Consensus 248 lpefkfW~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~ 327 (361)
|||||||+|+|||+++|+.||+|++||+|||||||++||++| |.+||||
T Consensus 114 LPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl~Y~i~l-------------------------------f~ltmrR 162 (188)
T KOG1688|consen 114 LPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILLMYFIVL-------------------------------FFLTMRR 162 (188)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH-------------------------------HHHHHHH
Confidence 777777777777779999999999999999999999999999 9999999
Q ss_pred HHHHHHhcccccCCCCCccccCCCC
Q psy9230 328 QIKHMIKYRYVPFSWGKPKYASHED 352 (361)
Q Consensus 328 qi~hmiky~Yvpf~~gk~~y~~~~~ 352 (361)
||+|||||||+||+.||++|+++++
T Consensus 163 qI~HMiKyrY~Pf~~gK~~~~~~~~ 187 (188)
T KOG1688|consen 163 QIAHMIKYRYIPFDIGKKKYGSHSD 187 (188)
T ss_pred HHHHHHhhcccccccCchhhhcccc
Confidence 9999999999999999999999886
No 2
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.3e-78 Score=541.37 Aligned_cols=174 Identities=59% Similarity=1.101 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCC
Q psy9230 13 VFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTD 92 (361)
Q Consensus 13 ~~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~ 92 (361)
+++++.++++++||++|||||||++.||+++++|+++|++||++.|||||||||||||+||+||+|||||+||+++||++
T Consensus 1 ~~~~~~~~~~~~yQ~~LDk~tp~~~~RW~~~~~L~~lf~~Rv~~~~g~YiVtY~LgIylLnlfi~FltP~~Dp~l~~~~~ 80 (176)
T PF03248_consen 1 AVSRFFQKLKRTYQSYLDKSTPYTKYRWIAFLVLLFLFLLRVYYLQGWYIVTYALGIYLLNLFIAFLTPKFDPELEQDEE 80 (176)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhcceeeehHHHHHHHHHHHHHHhCCcCccccccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred CCCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhcccccc
Q psy9230 93 CTPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFN 172 (361)
Q Consensus 93 ~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fD 172 (361)
T Consensus 81 -------------------------------------------------------------------------------- 80 (176)
T PF03248_consen 81 -------------------------------------------------------------------------------- 80 (176)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCc--ccccccccccccCcc
Q psy9230 173 IPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPT--RASEEFRPFIRRLPE 250 (361)
Q Consensus 173 IPVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~--~~~~efrpfirrlpe 250 (361)
|.|||+.||+ ++|||||||+|||||
T Consensus 81 -----------------------------------------------------~~~~g~~Lp~~~~~~~EFrPFiRRlPE 107 (176)
T PF03248_consen 81 -----------------------------------------------------DEEEGPELPTTNENDDEFRPFIRRLPE 107 (176)
T ss_pred -----------------------------------------------------cccccccCCCCcccccccCCccccchh
Confidence 2344555666 666777777777777
Q ss_pred hhhHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHHHHH
Q psy9230 251 FKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIK 330 (361)
Q Consensus 251 fkfW~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~qi~ 330 (361)
||||+++|||+++|++||+|++||||||||||++|||+| |++||||||+
T Consensus 108 FkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~l-------------------------------f~~tm~~qI~ 156 (176)
T PF03248_consen 108 FKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVL-------------------------------FVLTMKRQIK 156 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH-------------------------------HHHHHHHHHH
Confidence 777777777779999999999999999999999999999 9999999999
Q ss_pred HHHhcccccCCCCCccccCC
Q psy9230 331 HMIKYRYVPFSWGKPKYASH 350 (361)
Q Consensus 331 hmiky~Yvpf~~gk~~y~~~ 350 (361)
|||||||+|||.||++|+++
T Consensus 157 hMiKy~Y~Pf~~gK~~y~~~ 176 (176)
T PF03248_consen 157 HMIKYRYVPFDFGKKKYGRK 176 (176)
T ss_pred HHHHhCCCCccccchhccCC
Confidence 99999999999999999864
No 3
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-67 Score=466.95 Aligned_cols=170 Identities=49% Similarity=0.893 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCCC
Q psy9230 14 FSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDC 93 (361)
Q Consensus 14 ~~~~~~k~~~~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~~ 93 (361)
+....+.++++||+||||.+||+..||..+++|+.+||+||....|||+|||+||||+||+|++|||||+||+.||++++
T Consensus 11 ~~~k~n~~k~LyqhylDr~~P~~~~RW~i~ggL~~lf~iRI~~~~gwY~icY~LgiyLLn~flaFLTPKfdms~eq~e~d 90 (180)
T COG5249 11 LITKMNDLKTLYQHYLDRLAPRPDVRWGITGGLFLLFCIRIWSTGGWYLICYCLGIYLLNAFLAFLTPKFDMSFEQIEDD 90 (180)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhCCCCcccHhhhccc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999886431
Q ss_pred CCCCCCccccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccc
Q psy9230 94 TPLSCPVKTKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNI 173 (361)
Q Consensus 94 ~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDI 173 (361)
+....+
T Consensus 91 ----------------------------------~eieeg---------------------------------------- 96 (180)
T COG5249 91 ----------------------------------DEIEEG---------------------------------------- 96 (180)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 111111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhhhhhhhccCCCCCCCCCCCCCcccccccccccccCcchhh
Q psy9230 174 PVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKF 253 (361)
Q Consensus 174 PVFWPILlvYFivLF~lTMrRQI~~~~~~~c~~~~~~~~~y~l~Yll~~P~~~~~~~~~lp~~~~~efrpfirrlpefkf 253 (361)
+.||||||||||||||||
T Consensus 97 --------------------------------------------------------------~kd~EFrPFIRrLPEFkF 114 (180)
T COG5249 97 --------------------------------------------------------------EKDNEFRPFIRRLPEFKF 114 (180)
T ss_pred --------------------------------------------------------------cccchhhHHHHcCchhHH
Confidence 356666777777777777
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHHHHHHHHHHH
Q psy9230 254 WYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIITMKRQIKHMI 333 (361)
Q Consensus 254 W~~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~tm~~qi~hmi 333 (361)
|+++|+|+++|++.|+|++|||||||||||+|||.| +..|+||||+||+
T Consensus 115 Wy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l-------------------------------~f~t~rRqIqHM~ 163 (180)
T COG5249 115 WYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFL-------------------------------VFYTARRQIQHMK 163 (180)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHH-------------------------------HHHHHHHHHHHHH
Confidence 777777779999999999999999999999999999 9999999999999
Q ss_pred hcccccCCCCCccccCC
Q psy9230 334 KYRYVPFSWGKPKYASH 350 (361)
Q Consensus 334 ky~Yvpf~~gk~~y~~~ 350 (361)
||||+|||.||++|++|
T Consensus 164 KYrY~PfdigKkky~sh 180 (180)
T COG5249 164 KYRYNPFDIGKKKYKSH 180 (180)
T ss_pred HhcCCchhhhhhhhccC
Confidence 99999999999999886
No 4
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=4.3e-36 Score=269.90 Aligned_cols=120 Identities=43% Similarity=0.848 Sum_probs=98.0
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHH-hcCCccCcccccCCCCCCCCCCccccccCccccc
Q psy9230 33 TPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIA-FLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQ 111 (361)
Q Consensus 33 Tpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFia-FLtPk~Dp~l~qd~~~~~~~~~~~~~~~gg~~~~ 111 (361)
.-|..+-+...+.-++.|.+.||+++.+ ..|++ ...|..+.+.|++ |
T Consensus 36 ~lf~~Rv~~~~g~YiVtY~LgIylLnlf------------i~FltP~~Dp~l~~~~~~~-~------------------- 83 (176)
T PF03248_consen 36 FLFLLRVYYLQGWYIVTYALGIYLLNLF------------IAFLTPKFDPELEQDEEDE-E------------------- 83 (176)
T ss_pred HHHHHHHHHhcceeeehHHHHHHHHHHH------------HHHhCCcCccccccccccc-c-------------------
Confidence 3355556666666677788887776543 34666 4577776655333 3
Q ss_pred ccccccccCCCCCCCCCCCCCC--CCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHHHHHHHHHH
Q psy9230 112 HFTIYRHFSFPPDNDDDMQLPT--RASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFI 189 (361)
Q Consensus 112 ~~~~~~~~~~~~d~~dg~~lP~--~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILlvYFivLF~ 189 (361)
||+.||+ +++||||||+|||||||||++||||+++|++||+|+++|||||||||++|||+||+
T Consensus 84 ---------------~g~~Lp~~~~~~~EFrPFiRRlPEFkFW~~~tka~~i~~~~tff~~fdiPVFWPiLl~Yfi~lf~ 148 (176)
T PF03248_consen 84 ---------------EGPELPTTNENDDEFRPFIRRLPEFKFWYSCTKATVISLFCTFFPFFDIPVFWPILLVYFIVLFV 148 (176)
T ss_pred ---------------ccccCCCCcccccccCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 3456777 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy9230 190 ITMKRQIKVS 199 (361)
Q Consensus 190 lTMrRQI~~~ 199 (361)
+||||||+|-
T Consensus 149 ~tm~~qI~hM 158 (176)
T PF03248_consen 149 LTMKRQIKHM 158 (176)
T ss_pred HHHHHHHHHH
Confidence 9999999996
No 5
>KOG1688|consensus
Probab=100.00 E-value=8.5e-36 Score=268.44 Aligned_cols=124 Identities=48% Similarity=0.845 Sum_probs=105.6
Q ss_pred HHHhhhhccCccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHH-hcCCcc-CcccccCCCCCCCCCCcc
Q psy9230 24 RYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIA-FLSPKA-DLWLDSHTDCTPLSCPVK 101 (361)
Q Consensus 24 ~YQ~~LDksTpyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFia-FLtPk~-Dp~l~qd~~~~~~~~~~~ 101 (361)
++-..|=...-|..+-|++.+..++.|.+.||+++-+ +. |+. =..|.. |.+ +
T Consensus 42 RW~~tl~l~~iy~iRi~~~~G~YII~Y~LgIYlLNlf----------ia--FLtPk~Dp~~~~~~--d------------ 95 (188)
T KOG1688|consen 42 RWVVTLVLLLIYCIRIYLVQGFYIITYALGIYLLNLF----------IA--FLTPKVDPELQDAD--D------------ 95 (188)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------HH--HhCCCCCchhhccc--C------------
Confidence 4555566667788899999999999999999887643 22 444 357766 433 3
Q ss_pred ccccCcccccccccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHH
Q psy9230 102 TKVTGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILV 181 (361)
Q Consensus 102 ~~~~gg~~~~~~~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILl 181 (361)
|+.||++++||||||||||||||||+|+|||+++|++||+|+++|+|||||||+
T Consensus 96 --------------------------g~~Lpt~~~dEFrPFIRRLPEFKFW~s~~ka~~ia~~~tfF~~fdVPVFwPILl 149 (188)
T KOG1688|consen 96 --------------------------GPSLPTRKSDEFRPFIRRLPEFKFWYSSTKATLIALLCTFFSIFDVPVFWPILL 149 (188)
T ss_pred --------------------------CCCCCCCCccccchHHHcCchhHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 135899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9230 182 LYFITLFIITMKRQIKVS 199 (361)
Q Consensus 182 vYFivLF~lTMrRQI~~~ 199 (361)
+||++||++||||||+|.
T Consensus 150 ~Y~i~lf~ltmrRqI~HM 167 (188)
T KOG1688|consen 150 MYFIVLFFLTMRRQIAHM 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999997
No 6
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=99.29 E-value=1.6e-12 Score=116.48 Aligned_cols=117 Identities=42% Similarity=0.725 Sum_probs=92.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhccceeeeehhhHHHHHHHHHHhcCCccCcccccCCCCCCCCCCccccccCccccccc
Q psy9230 34 PYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTGGVIRQHF 113 (361)
Q Consensus 34 pyt~~RW~~~~~Ll~lFllRV~l~qGwYIV~YaLgIYlLNLFiaFLtPk~Dp~l~qd~~~~~~~~~~~~~~~gg~~~~~~ 113 (361)
-|..+-|.+.+..++.|++.+|+++.+- +.|.=-| .|.+....++|+-++ |.
T Consensus 46 lf~iRI~~~~gwY~icY~LgiyLLn~fl----------aFLTPKf-dms~eq~e~d~eiee-----------g~------ 97 (180)
T COG5249 46 LFCIRIWSTGGWYLICYCLGIYLLNAFL----------AFLTPKF-DMSFEQIEDDDEIEE-----------GE------ 97 (180)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHH----------HHhCCCC-cccHhhhcccccccc-----------cc------
Confidence 4667889999999999999999877653 3222222 232322222333221 10
Q ss_pred ccccccCCCCCCCCCCCCCCCCCccccccccCCcchhhHHHHHHHHHHHhhhhccccccccchhhHHHHHHHHHHHHHHH
Q psy9230 114 TIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMK 193 (361)
Q Consensus 114 ~~~~~~~~~~d~~dg~~lP~~~~dEFRPFIRRLPEFKFW~s~TkAtvisl~~Tff~~fDIPVFWPILlvYFivLF~lTMr 193 (361)
.| |||||||||||||||||++||||++|++.|+|++||||||||||++|||+|+.+|||
T Consensus 98 ---------kd------------~EFrPFIRrLPEFkFWy~s~rat~~aLi~s~F~IfDvPVfwPILvvYfi~l~f~t~r 156 (180)
T COG5249 98 ---------KD------------NEFRPFIRRLPEFKFWYFSTRATGMALIGSYFGIFDVPVFWPILVVYFIFLVFYTAR 156 (180)
T ss_pred ---------cc------------chhhHHHHcCchhHHHHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHH
Confidence 12 589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy9230 194 RQIKVS 199 (361)
Q Consensus 194 RQI~~~ 199 (361)
|||||-
T Consensus 157 RqIqHM 162 (180)
T COG5249 157 RQIQHM 162 (180)
T ss_pred HHHHHH
Confidence 999996
No 7
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=78.36 E-value=2.4 Score=40.79 Aligned_cols=30 Identities=30% Similarity=0.758 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHh
Q psy9230 256 SVMKSTLFATFFTLFDCFNIPVFWPILVLYFITL 289 (361)
Q Consensus 256 ~~~~~~~~~~~~t~f~~fdipVfwPiL~~Yfi~l 289 (361)
|..-.+++|++.++++.. +|++.++||++.
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~ 36 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVF 36 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHH
Confidence 556677889999987654 679999999999
No 8
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=59.78 E-value=15 Score=35.54 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy9230 154 SVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVS 199 (361)
Q Consensus 154 s~TkAtvisl~~Tff~~fDIPVFWPILlvYFivLF~lTMrRQI~~~ 199 (361)
+..-.+++|++.++++.. ||++.+.||++.++++|.=.+++.
T Consensus 7 sq~~il~fa~Vla~~p~y----~~~~filYfiv~~~i~~~~~~Rs~ 48 (233)
T PF09973_consen 7 SQVSILLFAAVLAFFPQY----YFEVFILYFIVFFGIMIVMGIRSY 48 (233)
T ss_pred HHHHHHHHHHHHHhccHH----HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 455667889999988644 679999999999999987666654
No 9
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=22.79 E-value=4.2e+02 Score=21.55 Aligned_cols=93 Identities=19% Similarity=0.394 Sum_probs=51.3
Q ss_pred cCcchhhHHHHHHHHHHHHHhhccc------------cccccchhhHHHHHHHHhhhhhhhhhhcccchhhhhhh-----
Q psy9230 247 RLPEFKFWYSVMKSTLFATFFTLFD------------CFNIPVFWPILVLYFITLFIITMKRQIKGEKVFYWGYL----- 309 (361)
Q Consensus 247 rlpefkfW~~~~~~~~~~~~~t~f~------------~fdipVfwPiL~~Yfi~l~~~~~~~~~~~~~~~~~~~~----- 309 (361)
|..--.||....-.+++........ ..-..+.+.+.++.++..+.++.||==.-.++=.|-.+
T Consensus 8 R~~R~~fw~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lal~vRRlhD~G~sg~~~~~~~~~~ 87 (120)
T PF05656_consen 8 RISRKEFWWFFLINILIFILLLILSIILFSSSSFGSSSIFSILFIIFILLLFIPSLALTVRRLHDIGRSGWWILLPFVLL 87 (120)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchHHHHHHHH
Confidence 4555568887776665554433222 22344556666666666667888887666666444444
Q ss_pred -hHHHhhHhHHHHHHHHHHHHHHHHhcccccCCCCCccccCCC
Q psy9230 310 -AVILVLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASHE 351 (361)
Q Consensus 310 -~~~~~~~~~~~f~~tm~~qi~hmiky~Yvpf~~gk~~y~~~~ 351 (361)
..+-....+..+++.+ .|=+-|..+|+...
T Consensus 88 ~~~ip~i~~i~~l~l~~------------~pg~~~~N~yG~~p 118 (120)
T PF05656_consen 88 ALLIPIIGIIVLLYLLF------------LPGQPGPNRYGPPP 118 (120)
T ss_pred HHHHHHHHHHHHHHHHh------------cCCCCCCCCCCcCC
Confidence 2222233334444443 56566667776543
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=20.96 E-value=51 Score=28.17 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q psy9230 39 RWSVAALLLIFFL 51 (361)
Q Consensus 39 RW~~~~~Ll~lFl 51 (361)
||+++++++++++
T Consensus 1 RW~l~~iii~~i~ 13 (130)
T PF12273_consen 1 RWVLFAIIIVAIL 13 (130)
T ss_pred CeeeHHHHHHHHH
Confidence 7888877776655
Done!