Query psy9230
Match_columns 361
No_of_seqs 156 out of 299
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 22:14:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3owt_C Regulatory protein SIR3 27.3 21 0.00073 23.2 1.0 15 17-31 13-27 (27)
2 2z73_A Rhodopsin; visual pigme 20.3 2.3E+02 0.0079 25.6 6.8 33 287-319 54-86 (448)
3 3r84_A Mediator of RNA polymer 16.6 1.3E+02 0.0045 24.1 3.8 28 318-345 56-86 (86)
4 1u19_A Rhodopsin; G protein-co 14.9 5.4E+02 0.018 21.8 8.4 38 287-324 58-95 (349)
5 4f4l_A ION transport protein; 9.3 1.5E+02 0.005 23.6 2.0 20 68-87 82-101 (112)
6 2ks9_A Substance-P receptor; w 8.8 9E+02 0.031 20.7 8.6 34 288-321 53-86 (364)
7 1qle_D Cytochrome AA3, ccytoch 8.1 1.5E+02 0.0052 20.9 1.4 17 305-321 25-41 (43)
8 3v2y_A Sphingosine 1-phosphate 8.0 2.5E+02 0.0086 26.5 3.4 35 288-322 84-118 (520)
9 2lnl_A C-X-C chemokine recepto 8.0 3.1E+02 0.011 23.1 3.6 32 289-320 33-64 (296)
10 2pif_A UPF0317 protein pspto_5 7.5 72 0.0024 30.6 -0.7 8 274-281 225-232 (276)
No 1
>3owt_C Regulatory protein SIR3; RCT domain, protein binding; 2.00A {Saccharomyces cerevisiae}
Probab=27.34 E-value=21 Score=23.20 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhc
Q psy9230 17 TSKSIKQRYQTLLDL 31 (361)
Q Consensus 17 ~~~k~~~~YQ~~LDk 31 (361)
..++++++||..||+
T Consensus 13 tlsklkkkyqiildr 27 (27)
T 3owt_C 13 TLSKLKKKYQIILDR 27 (27)
T ss_pred HHHHHHhhheeeecC
Confidence 467999999999996
No 2
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=20.26 E-value=2.3e+02 Score=25.61 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHhhhhhhhhhhcccchhhhhhhhHHHhhHhHH
Q psy9230 287 ITLFIITMKRQIKGEKVFYWGYLAVILVLYFIT 319 (361)
Q Consensus 287 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (361)
++++++..+|+.+......--+||.+|.+..+.
T Consensus 54 lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~ 86 (448)
T 2z73_A 54 IVIYLFTKTKSLQTPANMFIINLAFSDFTFSLV 86 (448)
T ss_dssp HHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhccccCCccchHHHHHHHHHHHHHHH
Confidence 333344556666666667888999999887654
No 3
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=16.60 E-value=1.3e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHH---HhcccccCCCCCc
Q psy9230 318 ITLFIITMKRQIKHM---IKYRYVPFSWGKP 345 (361)
Q Consensus 318 ~~~f~~tm~~qi~hm---iky~Yvpf~~gk~ 345 (361)
+-+....|||||+|| |--+-.|-+.+||
T Consensus 56 L~~v~v~LrkEIk~LdEnig~~~LPinv~~k 86 (86)
T 3r84_A 56 LDKSTTQLRKEIQLLDENVGTRLLPINVNKK 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTBTTTBCCC-----
T ss_pred HHHHHHHHHHHHHHHHHccCCeeecccCCCC
Confidence 344677899999999 5556677666553
No 4
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=14.94 E-value=5.4e+02 Score=21.76 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHH
Q psy9230 287 ITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIIT 324 (361)
Q Consensus 287 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~t 324 (361)
++++++..+|+.+......--+||.+|.+..+......
T Consensus 58 lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~ 95 (349)
T 1u19_A 58 LTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 95 (349)
T ss_dssp HHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred heEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHH
Confidence 34444455666665555778899999998876654443
No 5
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=9.26 E-value=1.5e+02 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCccCccc
Q psy9230 68 GIYDLNLFIAFLSPKADLWL 87 (361)
Q Consensus 68 gIYlLNLFiaFLtPk~Dp~l 87 (361)
...+||+|+|-+.-.++...
T Consensus 82 ~fi~lNLfiaVi~~~f~~~~ 101 (112)
T 4f4l_A 82 TFTVLNLFIGIIVDAMAITK 101 (112)
T ss_dssp HHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45689999998877775443
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=8.81 E-value=9e+02 Score=20.69 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=22.8
Q ss_pred HhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHH
Q psy9230 288 TLFIITMKRQIKGEKVFYWGYLAVILVLYFITLF 321 (361)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 321 (361)
+++++..+|+.+.......-+||.+|.+..+...
T Consensus 53 vi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~ 86 (364)
T 2ks9_A 53 VMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNT 86 (364)
T ss_dssp HHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3334445666666666788899999988755443
No 7
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=8.07 E-value=1.5e+02 Score=20.91 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.4
Q ss_pred hhhhhhHHHhhHhHHHH
Q psy9230 305 YWGYLAVILVLYFITLF 321 (361)
Q Consensus 305 ~~~~~~~~~~~~~~~~f 321 (361)
+||+++++-+|.+.+.|
T Consensus 25 k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 25 TWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999988887765
No 8
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=8.01 E-value=2.5e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=25.1
Q ss_pred HhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHH
Q psy9230 288 TLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFI 322 (361)
Q Consensus 288 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 322 (361)
++.++..+|+.+....++...||.+|.|..++...
T Consensus 84 vi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p 118 (520)
T 3v2y_A 84 VLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTA 118 (520)
T ss_dssp HHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777776678889999999988765543
No 9
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=7.98 E-value=3.1e+02 Score=23.11 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.4
Q ss_pred hhhhhhhhhhcccchhhhhhhhHHHhhHhHHH
Q psy9230 289 LFIITMKRQIKGEKVFYWGYLAVILVLYFITL 320 (361)
Q Consensus 289 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (361)
+.++.-+|+.+....+.-.+||.+|.+..++.
T Consensus 33 i~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~ 64 (296)
T 2lnl_A 33 MLVILYSRVGRSVTDVYLLNLALADLLFALTL 64 (296)
T ss_dssp HHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCChHHHHHHHHHHHHHHHHHhh
Confidence 33445567777777788999999998866543
No 10
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=7.48 E-value=72 Score=30.61 Aligned_cols=8 Identities=50% Similarity=1.473 Sum_probs=6.4
Q ss_pred cccchhhH
Q psy9230 274 NIPVFWPI 281 (361)
Q Consensus 274 dipVfwPi 281 (361)
+|||||+-
T Consensus 225 eVPVFWaC 232 (276)
T 2pif_A 225 EVPVFWAC 232 (276)
T ss_dssp EEEEEEEC
T ss_pred CcceEecC
Confidence 49999973
Done!