Query psy9230
Match_columns 361
No_of_seqs 156 out of 299
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 22:14:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9230.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9230hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 14.6 2.1E+02 0.015 22.4 7.0 40 285-324 55-94 (348)
2 d1b77a1 d.131.1.2 (A:1-110) gp 10.0 20 0.0014 27.9 -1.0 24 66-89 51-75 (110)
3 d2pifa1 d.382.1.1 (A:7-262) Un 6.2 43 0.0031 29.6 -0.7 7 274-280 219-225 (256)
4 d1veha_ d.52.8.1 (A:) HIRA-int 5.2 1.3E+02 0.0098 22.0 1.7 20 320-340 60-79 (92)
5 d1xmea1 f.24.1.1 (A:14-562) Ba 4.8 2.1E+02 0.015 26.8 3.2 22 66-87 467-488 (549)
6 d1hdma2 d.19.1.1 (A:13-93) Cla 4.8 1E+02 0.0076 22.9 0.8 13 142-154 40-52 (81)
7 d1k8ia2 d.19.1.1 (A:11-92) Cla 4.3 1.1E+02 0.0081 22.8 0.7 14 142-155 39-52 (82)
8 d1u84a_ a.230.1.1 (A:) hypothe 4.1 2E+02 0.015 21.2 2.0 22 325-347 4-25 (81)
9 d1k8ba_ d.241.1.1 (A:) Transla 3.2 1.7E+02 0.012 19.4 0.8 15 321-335 17-31 (52)
10 d1kqfb2 f.23.22.1 (B:246-290) 3.1 2.1E+02 0.016 18.9 1.2 17 214-230 27-43 (45)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.60 E-value=2.1e+02 Score=22.37 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHhhhhhhhhhhcccchhhhhhhhHHHhhHhHHHHHHH
Q psy9230 285 YFITLFIITMKRQIKGEKVFYWGYLAVILVLYFITLFIIT 324 (361)
Q Consensus 285 Yfi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~t 324 (361)
-.+++.++.-+|+.+......-..||.+|.+..++.....
T Consensus 55 N~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~ 94 (348)
T d1u19a_ 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 94 (348)
T ss_dssp HHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444566665555677789999988766655443
No 2
>d1b77a1 d.131.1.2 (A:1-110) gp45 sliding clamp {Bacteriophage RB69 [TaxId: 12353]}
Probab=10.02 E-value=20 Score=27.90 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhcCCc-cCccccc
Q psy9230 66 ALGIYDLNLFIAFLSPK-ADLWLDS 89 (361)
Q Consensus 66 aLgIYlLNLFiaFLtPk-~Dp~l~q 89 (361)
-.|||-||.||+-|+=. -||+++-
T Consensus 51 efaIYDL~eFL~~lsL~~~~p~l~f 75 (110)
T d1b77a1 51 DVALYDLNSFLSILSLVSDDAEISM 75 (110)
T ss_dssp CEEESCHHHHHHHHTTSCTTCEEEE
T ss_pred ceeeeeHHHHHhHHhhccCCCcccc
Confidence 46899999999999865 4787754
No 3
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=6.18 E-value=43 Score=29.59 Aligned_cols=7 Identities=57% Similarity=1.735 Sum_probs=5.9
Q ss_pred cccchhh
Q psy9230 274 NIPVFWP 280 (361)
Q Consensus 274 dipVfwP 280 (361)
+|||||+
T Consensus 219 evPVFWa 225 (256)
T d2pifa1 219 EVPVFWA 225 (256)
T ss_dssp EEEEEEE
T ss_pred CcceEee
Confidence 5999996
No 4
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.16 E-value=1.3e+02 Score=22.01 Aligned_cols=20 Identities=40% Similarity=0.756 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcccccC
Q psy9230 320 LFIITMKRQIKHMIKYRYVPF 340 (361)
Q Consensus 320 ~f~~tm~~qi~hmiky~Yvpf 340 (361)
+-..|+|..|++|+|+ ++|-
T Consensus 60 ~s~~Tlk~~Ie~~L~~-~vpe 79 (92)
T d1veha_ 60 SSIITLKSGIQNMLQF-YIPE 79 (92)
T ss_dssp HHHHHTHHHHHHHHHH-HCSS
T ss_pred hHHHHHHHHHHHHHHH-HCCC
Confidence 3567899999999998 4574
No 5
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=4.79 E-value=2.1e+02 Score=26.78 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhcCCccCccc
Q psy9230 66 ALGIYDLNLFIAFLSPKADLWL 87 (361)
Q Consensus 66 aLgIYlLNLFiaFLtPk~Dp~l 87 (361)
+..+++.|++....+.+-.|+.
T Consensus 467 g~l~f~~nl~~s~~~~~~~~~~ 488 (549)
T d1xmea1 467 ALLLFIYGLFSVLLSRERKPEL 488 (549)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCC
Confidence 4457888888888877765554
No 6
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=4.77 E-value=1e+02 Score=22.86 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=10.8
Q ss_pred cccCCcchhhHHH
Q psy9230 142 FIRRLPEFKFWYS 154 (361)
Q Consensus 142 FIRRLPEFKFW~s 154 (361)
-+-|||||+=|-.
T Consensus 40 rvPrLPefa~Wa~ 52 (81)
T d1hdma2 40 RVPRLPEFADWAQ 52 (81)
T ss_dssp EEESSGGGGGGTT
T ss_pred cccCCCccccchh
Confidence 4779999999963
No 7
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=4.29 E-value=1.1e+02 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.5
Q ss_pred cccCCcchhhHHHH
Q psy9230 142 FIRRLPEFKFWYSV 155 (361)
Q Consensus 142 FIRRLPEFKFW~s~ 155 (361)
-+-|||||+=|-.-
T Consensus 39 rvPrLPefa~Wa~~ 52 (82)
T d1k8ia2 39 RVPRLPDFAEWAQG 52 (82)
T ss_dssp EEESSTTTTHHHHC
T ss_pred cccCCCcccccccc
Confidence 47799999999753
No 8
>d1u84a_ a.230.1.1 (A:) hypothetical protein YugE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.09 E-value=2e+02 Score=21.22 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcccccCCCCCccc
Q psy9230 325 MKRQIKHMIKYRYVPFSWGKPKY 347 (361)
Q Consensus 325 m~~qi~hmiky~Yvpf~~gk~~y 347 (361)
|.++.-|+|| ++-||-.|...|
T Consensus 4 ~n~~m~~~i~-~WDPF~~G~d~Y 25 (81)
T d1u84a_ 4 LNRLLLEWIG-AWDPFGLGKDAY 25 (81)
T ss_dssp HHHHHHHHHH-HHCTTSSCGGGG
T ss_pred HHHHHHHHHH-ccCCcccCccch
Confidence 6778888887 689999999999
No 9
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.24 E-value=1.7e+02 Score=19.39 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhc
Q psy9230 321 FIITMKRQIKHMIKY 335 (361)
Q Consensus 321 f~~tm~~qi~hmiky 335 (361)
.+-.|+|.-+|+.||
T Consensus 17 I~~~L~R~p~hv~kf 31 (52)
T d1k8ba_ 17 LAKAVNRDEEFFAKY 31 (52)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHH
Confidence 566789999999886
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=2.1e+02 Score=18.91 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=12.8
Q ss_pred hhhhhhccCCCCCCCCC
Q psy9230 214 YHLQYLLSCPQRNNDDD 230 (361)
Q Consensus 214 y~l~Yll~~P~~~~~~~ 230 (361)
.++-|+.-+||+.+||+
T Consensus 27 ~~fHYv~vGPn~v~ee~ 43 (45)
T d1kqfb2 27 LIFHYIGIGPNKEVDDD 43 (45)
T ss_dssp HHHHHHHHCCBCSCSST
T ss_pred HHHhhheeCCCcccccc
Confidence 46789989999766655
Done!