RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9230
(361 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 1e-06
Identities = 43/319 (13%), Positives = 89/319 (27%), Gaps = 103/319 (32%)
Query: 21 IKQRYQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYIICYALGIYDLNLFIAFLS 80
I + + D S+ S+ A L ++ Y L +
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY--------ENCLLVLL--------- 251
Query: 81 PKADLWLDSHTDCTPLSCPVKTKVT----------GGVIRQHFTIYRH-FSFPPDNDDDM 129
++ + LSC K +T H ++ H + PD +
Sbjct: 252 ---NVQNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 130 ----------QLPTRA-----------SEEFRPFIRRLPEFKFW---------------Y 153
LP +E R + + W
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTIIESSL 363
Query: 154 SVMKSTLFATFFTLFDCF----NIP-----VFWPILVLYFITLFIITMKRQIKVSLINMC 204
+V++ + F F +IP + W ++ + + + + + SL+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVE-- 418
Query: 205 RKESPLVTTYHLQYLLSCPQRNNDDDM--------QLP-TRASEEFRPFIRRLPEFKFWY 255
++ + YL + N+ + +P T S++ P +++Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP----PYLDQYFY 474
Query: 256 SV----MKSTLFATFFTLF 270
S +K+ TLF
Sbjct: 475 SHIGHHLKNIEHPERMTLF 493
Score = 38.3 bits (88), Expect = 0.004
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 23/95 (24%)
Query: 157 KSTLFAT---FFTLFDCFNIPVFWPILVLYFITLFIITMKRQIKVSLINMCRKESPLVTT 213
K+ + + + + +FW ++L N E+ L
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW--------------------LNLKNCNSPETVLEML 202
Query: 214 YHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRL 248
L Y + + D + +RRL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Score = 27.9 bits (61), Expect = 6.9
Identities = 21/178 (11%), Positives = 49/178 (27%), Gaps = 50/178 (28%)
Query: 148 EFKFWYSVMKSTLFATFFTLFDCFNIPVFW-PIL-----------------VLYFITLFI 189
E ++ Y + S F FDC ++ IL L +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 190 ITMKRQIKVSLINMCRKESP-LVTTYHLQYLLSCPQRNNDDDMQLPTR-----ASEEFRP 243
+ ++ + + R L++ + Q + M + R ++ F
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 244 -FIRRLPEFK------------FWYSV--M----KSTLFAT---FFTLFDCFNIPVFW 279
+ RL + + + K+ + + + + +FW
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 66/445 (14%), Positives = 118/445 (26%), Gaps = 190/445 (42%)
Query: 2 QDFSSSND-----------SGNVFSKTSKSIKQRYQTLLDLSTPYTFGRWSVAALLLIFF 50
+ ND + KT + IK + P+ + S +AL F
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--KKSNSAL----F 146
Query: 51 ------LARIYLL---QGWYIICYA-L-GIYD-----LNLFIAF----LSPKA------- 83
A++ + QG + L +Y + I F LS
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 84 -------DL--WLDSHTDCTP-----LSCPVKTKVTGGVIRQ--HFTIYRHFS-FPPDND 126
++ WL+ + TP LS P+ + G + Q H+ + F P
Sbjct: 207 KVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTP--- 260
Query: 127 DDMQLPTRASEEFRPFIRRL-------------------PEFKFWYSVMKSTLFATFFTL 167
E R +++ F + ++ + FF
Sbjct: 261 ----------GELRSYLKGATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVLFFIG 307
Query: 168 FDC---FNIPVFWPILVLYFIT---------LFIITMKR------------------QIK 197
C + P ++ + L I + + Q++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 198 VSLINMCRKESP--LVTT------YHLQYLL---SCP-----------QRNNDDDMQ-LP 234
+SL+N LV + Y L L P +R + LP
Sbjct: 368 ISLVN-----GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 235 TRASEEFRPF------------IRRLP--EFKFWYSVMKSTLFATF-------------F 267
+ PF + L F ++ ++ TF
Sbjct: 423 VAS-----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 268 TLFDC-FNIPVFWPILVLYFITLFI 291
+ DC +PV W + T +
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHIL 502
Score = 31.2 bits (70), Expect = 0.71
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 199 SLINMCRKESPLVTTYHLQYLLSCPQRNNDDDM--QLPTRASEEFRPFIRRLPE--FKFW 254
S++++ +P+ T H R N M + + + + E +
Sbjct: 1660 SILDIVI-NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 255 YSVMKSTLFATFFT 268
+ K L AT FT
Sbjct: 1719 FRSEKGLLSATQFT 1732
Score = 30.8 bits (69), Expect = 0.95
Identities = 42/284 (14%), Positives = 75/284 (26%), Gaps = 114/284 (40%)
Query: 41 SVAALLLIF--FLARIYLLQGWYIICYALGIYD------LNLF-IAFLSPKADLWLDSHT 91
+ A L+ F +++ + +G +D L F +L D H
Sbjct: 56 TPAELVGKFLGYVSS-LVEPS------KVGQFDQVLNLCLTEFENCYLEGN-----DIHA 103
Query: 92 DCTPLSCPVKTKV--TGGVIRQHFTIYRHFSFPPDNDDDMQLPTRASEEFRPFIRRLPEF 149
L T + T +I+ + T R + RPF ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYIT------------------ARIMAK-RPFDKKSN-- 142
Query: 150 KFWYSVMKSTLF-------ATFFTLF----DCFNIPVFWPILV-LY-----FITLFIITM 192
S LF A +F N ++ L LY + I
Sbjct: 143 --------SALFRAVGEGNAQLVAIFGGQG---NTDDYFEELRDLYQTYHVLVGDLIKFS 191
Query: 193 KRQIKVSLINMCRKESPLVT-TYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEF 251
+ LI + T ++ L P D D
Sbjct: 192 AETLS-ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--------------------- 229
Query: 252 KFWYSVMKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMK 295
Y + IP+ P++ + + +++T K
Sbjct: 230 ---Y-------LLS---------IPISCPLIGVIQLAHYVVTAK 254
Score = 28.9 bits (64), Expect = 3.1
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 31/106 (29%)
Query: 80 SPKA-DLW--LDSHTDCT------------PLSCPVKTKVTGGV----IRQHFTIYRHFS 120
S A D+W D+H T P++ T GG IR++ Y
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVN---LTIHFGGEKGKRIREN---YSAMI 1692
Query: 121 FPPDNDDDMQLPTRASEEFRPFIRRLPEFKFWYSVMKSTLFATFFT 166
F + D +L T + F+ + F K L AT FT
Sbjct: 1693 F--ETIVDGKLKTE--KIFKEINEHSTSYTFRSE--KGLLSATQFT 1732
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 31.5 bits (72), Expect = 0.50
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 140 RPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNI-PVFW----PILVLYFITLFIIT 191
PF +P ++ ++ + AT FT++ F I + F I+
Sbjct: 816 GPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMG 872
Score = 31.5 bits (72), Expect = 0.50
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 242 RPFIRRLPEFKFWYSVMKSTLFATFFTLFDCFNI-PVFW----PILVLYFITLFIIT 293
PF +P ++ ++ + AT FT++ F I + F I+
Sbjct: 816 GPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMG 872
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 28.3 bits (64), Expect = 4.1
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 240 EFRPFIRRLPEFKFWYSV-MKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMK-RQ 297
F ++L F F + T+F + + NI VF + + + R
Sbjct: 180 PFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRL 239
Query: 298 IKGEKV 303
+K
Sbjct: 240 EDTQKH 245
Score = 27.9 bits (63), Expect = 5.2
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 138 EFRPFIRRLPEFKFWYSV-MKSTLFATFFTLFDCFNIPVFWPILVLYFITLFIITMK 193
F ++L F F + T+F + + NI VF + + +
Sbjct: 180 PFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKE 236
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 28.1 bits (62), Expect = 4.6
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 196 IKVSLINMCRKESPLVTTYHLQYLLSCPQRNNDDDMQLPTRASEEFRPFIRRLPEFKFWY 255
K+S + +V + L+S P D + + EF F
Sbjct: 198 FKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEF--------SSDFTL 249
Query: 256 SVMKSTLFATFFTLFDCF 273
+ ++++ FD +
Sbjct: 250 KITRTSMCTAIAGYFDIY 267
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher
plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana}
PDB: 1zy0_A 1zy1_A
Length = 197
Score = 27.6 bits (62), Expect = 4.7
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 307 GYLAVIL---------VLYFITLFIITMKRQIKHMIKYRYVPFSWGKPKYASH 350
G+ A IL LY ++ + + +P + G PK SH
Sbjct: 145 GWQARILQHECDHLDGNLY--VDKMVPRTFR---TVDNLDLPLAEGCPKLGSH 192
>1xl4_A Inward rectifier potassium channel; integral membrane protein,
ION channel, inwardly rectifying channel, metal
transport; 2.60A {Magnetospirillum magnetotacticum}
SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B
2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A
2x6c_A* 2x6b_A* 2x6a_A*
Length = 301
Score = 27.3 bits (60), Expect = 6.9
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 25 YQTLLDLSTPYTFGRWSVAALLLIFFLARIYLLQGWYI 62
Y LL +S P + L+ A YL G I
Sbjct: 38 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVI 75
>3fmg_A Glycoprotein VP7; antibody-antigen complex, calcium dependent
trimer, antipara beta-sandwich, jelly roll,
alpha-beta-alpha sandwich; 3.40A {Simian rotavirus} PDB:
3iyu_A* 3gzt_B* 2kvl_A
Length = 276
Score = 26.9 bits (59), Expect = 9.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 71 DLNLFIAFLSPKADLWLDSHTDCTPLSCPVKTKVTG 106
D+ L+ + +A+ W+ + CT CP+ T+ G
Sbjct: 119 DITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLG 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.467
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,642,744
Number of extensions: 330412
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 22
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.4 bits)