BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9231
(134 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/73 (84%), Positives = 68/73 (93%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
VLCKVCGD+ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE G C+VDV+RRNQCQACRF
Sbjct: 7 VLCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCVVDVSRRNQCQACRF 66
Query: 122 SKCLQVKMNRDAM 134
+KCLQ M R+A+
Sbjct: 67 AKCLQANMRREAV 79
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 149 bits (375), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/72 (88%), Positives = 66/72 (91%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC+VCGDKASGKHYGV SCDGCRGFFKRSIRRNLEYVCKE G CIVDVTRRNQCQACRF
Sbjct: 16 LCRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKENGRCIVDVTRRNQCQACRFK 75
Query: 123 KCLQVKMNRDAM 134
KCLQV M RDA+
Sbjct: 76 KCLQVNMKRDAV 87
>gi|357612132|gb|EHJ67823.1| putative PNR-like protein [Danaus plexippus]
Length = 431
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+V+C+VCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+Y+CKE G CIVDV+RRNQCQACR
Sbjct: 6 EVVCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYICKENGSCIVDVSRRNQCQACR 65
Query: 121 FSKCLQVKMNRDAM 134
FSKCL+V M +DA+
Sbjct: 66 FSKCLRVNMKKDAV 79
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/74 (83%), Positives = 67/74 (90%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE C+VDV+RRNQCQACR
Sbjct: 8 EALCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENSQCVVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F KCLQV M RDA+
Sbjct: 68 FRKCLQVNMKRDAV 81
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/71 (84%), Positives = 65/71 (91%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LCKVCGD+ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE G C+VDV+RRNQCQACRF+
Sbjct: 24 LCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCVVDVSRRNQCQACRFA 83
Query: 123 KCLQVKMNRDA 133
KCLQ M R+
Sbjct: 84 KCLQANMRREG 94
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ETLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 9 ETLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 68
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 69 FTKCLQVNMKRDAV 82
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ESLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ETLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ESLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ESLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ESLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL+YVCKE G CIVDV+RRNQCQACR
Sbjct: 8 ESLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKENGRCIVDVSRRNQCQACR 67
Query: 121 FSKCLQVKMNRDAM 134
F+KCLQV M RDA+
Sbjct: 68 FTKCLQVNMKRDAV 81
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 69/80 (86%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
TG+ + LC VCGD+ASGKHYGV SCDGCRGFFKRSIRRNL+YVCKE G C+VDV RRN
Sbjct: 6 TGMKKPEALCLVCGDRASGKHYGVQSCDGCRGFFKRSIRRNLDYVCKENGQCVVDVARRN 65
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQACRF KCLQV MNRDA+
Sbjct: 66 QCQACRFKKCLQVNMNRDAV 85
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 67/74 (90%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LC+VCGDKASGKHYGV SCDGCRGFFKRSIRRNLEYVCKE G CIVDVTRRNQCQACR
Sbjct: 11 ESLCRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKENGRCIVDVTRRNQCQACR 70
Query: 121 FSKCLQVKMNRDAM 134
F KCLQV M RDA+
Sbjct: 71 FKKCLQVNMKRDAV 84
>gi|157117589|ref|XP_001658840.1| nuclear receptor [Aedes aegypti]
Length = 314
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 67/73 (91%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
LCKVCGD+ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE G C+VDV+RRNQCQACRF
Sbjct: 14 ALCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCVVDVSRRNQCQACRF 73
Query: 122 SKCLQVKMNRDAM 134
+KCLQ M R+A+
Sbjct: 74 AKCLQANMRREAV 86
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 69/77 (89%), Gaps = 3/77 (3%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRR---NLEYVCKERGHCIVDVTRRNQCQ 117
+ LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRR NL+YVCKE G CIVDV+RRNQCQ
Sbjct: 8 EALCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRYARNLDYVCKENGRCIVDVSRRNQCQ 67
Query: 118 ACRFSKCLQVKMNRDAM 134
ACRF+KCLQV M RDA+
Sbjct: 68 ACRFTKCLQVNMKRDAV 84
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 67/73 (91%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
LCKVCGD+ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE G C+VDV+RRNQCQACRF
Sbjct: 14 ALCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCVVDVSRRNQCQACRF 73
Query: 122 SKCLQVKMNRDAM 134
+KCLQ M R+A+
Sbjct: 74 AKCLQANMRREAV 86
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
++LC VCGDKASGKHYGV SCDGCRGFFKRSIRR+LEYVCKE G+C+VDV RRNQCQACR
Sbjct: 140 EILCLVCGDKASGKHYGVQSCDGCRGFFKRSIRRSLEYVCKENGNCVVDVARRNQCQACR 199
Query: 121 FSKCLQVKMNRDAM 134
F KCL++KMNRDA+
Sbjct: 200 FRKCLEMKMNRDAV 213
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 68/74 (91%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
D+ C+VCGD++SGKHYGV SCDGCRGFFKRS+RRNL YVCKE +CIVDVTRRNQCQACR
Sbjct: 20 DIPCRVCGDRSSGKHYGVYSCDGCRGFFKRSVRRNLAYVCKENNNCIVDVTRRNQCQACR 79
Query: 121 FSKCLQVKMNRDAM 134
F KCL+V+MN+DA+
Sbjct: 80 FKKCLEVRMNKDAV 93
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
++ LC VCGDKASG+HYGV SCDGCRGFFKRSIRRNL+Y+CKE CIVDV+RRNQCQAC
Sbjct: 7 LEALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYMCKESNQCIVDVSRRNQCQAC 66
Query: 120 RFSKCLQVKMNRDAM 134
RF +CL+VKM RDA+
Sbjct: 67 RFRRCLEVKMKRDAV 81
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/79 (69%), Positives = 67/79 (84%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G +D+ C+VCGD++SG+HYGV SCDGCRGFFKRS+RRNL YVC++ G CIV+V RRNQ
Sbjct: 188 GERGLDIPCQVCGDRSSGRHYGVYSCDGCRGFFKRSVRRNLAYVCRDGGRCIVNVPRRNQ 247
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQACR+ KCL V MNRDA+
Sbjct: 248 CQACRYRKCLAVNMNRDAV 266
>gi|170065989|ref|XP_001868086.1| nuclear receptor [Culex quinquefasciatus]
gi|167862692|gb|EDS26075.1| nuclear receptor [Culex quinquefasciatus]
Length = 155
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 66/75 (88%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ LCKVCGD+ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE G CIVDV+RRNQCQ
Sbjct: 50 SGQGALCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCIVDVSRRNQCQ 109
Query: 118 ACRFSKCLQVKMNRD 132
ACRF+KC+Q M R+
Sbjct: 110 ACRFAKCIQANMRRE 124
>gi|339238869|ref|XP_003380989.1| zinc finger protein [Trichinella spiralis]
gi|316976049|gb|EFV59394.1| zinc finger protein [Trichinella spiralis]
Length = 562
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/71 (81%), Positives = 61/71 (85%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGDKASGKHYGVPSCDGCRGFFKRSIRRNL Y CK C+VDV RRNQCQACR K
Sbjct: 114 CQVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLTYQCKSNDDCVVDVARRNQCQACRLKK 173
Query: 124 CLQVKMNRDAM 134
CLQVKMNR A+
Sbjct: 174 CLQVKMNRHAV 184
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 63/75 (84%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
++ LCKVCGDKASGKHYGV SCDGCRGFFKRSIRR L Y CKE CIVDVTRRNQCQAC
Sbjct: 5 LEALCKVCGDKASGKHYGVISCDGCRGFFKRSIRRGLAYHCKESNSCIVDVTRRNQCQAC 64
Query: 120 RFSKCLQVKMNRDAM 134
RF KCL V M RDA+
Sbjct: 65 RFKKCLSVNMKRDAV 79
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/82 (67%), Positives = 65/82 (79%)
Query: 53 VWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTR 112
V GI + LC+VCGD+ASG+HYGV SCDGCRGFFKRS+RR+L + CKE G C+VDV R
Sbjct: 68 VPVGIGDREPLCRVCGDRASGRHYGVASCDGCRGFFKRSVRRDLRFSCKEGGTCVVDVAR 127
Query: 113 RNQCQACRFSKCLQVKMNRDAM 134
RNQCQACR KCL V M R+A+
Sbjct: 128 RNQCQACRLKKCLAVNMRREAV 149
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGDK+SG+HYGV +CDGCRGFFKR++RRNL ++CKE G+C VDV RRNQCQACR K
Sbjct: 24 CRVCGDKSSGRHYGVFTCDGCRGFFKRAVRRNLLFLCKENGNCQVDVARRNQCQACRLRK 83
Query: 124 CLQVKMNRDAM 134
C V MNRDA+
Sbjct: 84 CYDVHMNRDAV 94
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 62/73 (84%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+ C++CGD++SGKHYGV SCDGCRGFFKRSIRRNL Y+CKE G C+VDV RRNQCQACRF
Sbjct: 1 IPCRICGDRSSGKHYGVYSCDGCRGFFKRSIRRNLAYICKENGSCVVDVARRNQCQACRF 60
Query: 122 SKCLQVKMNRDAM 134
KCL +MN+D
Sbjct: 61 KKCLDAQMNKDGF 73
>gi|392898442|ref|NP_500190.3| Protein NHR-236 [Caenorhabditis elegans]
gi|351059122|emb|CCD66972.1| Protein NHR-236 [Caenorhabditis elegans]
Length = 283
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 62/71 (87%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGD+ASG+HYGV SCDGCRGFFKRSIRRNL Y CKE G C++DVTRRNQCQACRF K
Sbjct: 13 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCKESGDCVIDVTRRNQCQACRFQK 72
Query: 124 CLQVKMNRDAM 134
C+ V MNR A+
Sbjct: 73 CITVAMNRHAV 83
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGD++SGKHYGV +CDGCRGFFKRSIRRNL Y CKE G C+VDV RRNQCQACR K
Sbjct: 1 CRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCQACRLKK 60
Query: 124 CLQVKMNRDAM 134
C +V+MN+DA+
Sbjct: 61 CFEVQMNKDAV 71
>gi|341892635|gb|EGT48570.1| CBN-NHR-236 protein [Caenorhabditis brenneri]
Length = 284
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/73 (75%), Positives = 62/73 (84%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
++C+VCGD+ASG+HYGV SCDGCRGFFKRSIRRNL Y CKE C+VDV RRNQCQACRF
Sbjct: 10 LICRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEGQGCVVDVVRRNQCQACRF 69
Query: 122 SKCLQVKMNRDAM 134
KCL V MNR A+
Sbjct: 70 QKCLAVSMNRHAV 82
>gi|268580289|ref|XP_002645127.1| C. briggsae CBR-NHR-236 protein [Caenorhabditis briggsae]
Length = 299
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 60/71 (84%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGD+ASG+HYGV SCDGCRGFFKRSIRRNL Y CKE C++DV RRNQCQ+CRF K
Sbjct: 12 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEAKRCVIDVVRRNQCQSCRFQK 71
Query: 124 CLQVKMNRDAM 134
CL V MNR A+
Sbjct: 72 CLAVSMNRHAV 82
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C+VCGD+ASGKHYGV +CDGCRGFFKRS+RRNL Y CKE+ C +DV RRNQCQACR
Sbjct: 2 VQCRVCGDRASGKHYGVMTCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRL 61
Query: 122 SKCLQVKMNRDAM 134
KC ++ MNRDA+
Sbjct: 62 RKCFEMNMNRDAV 74
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 49 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 108
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 109 ACRLKKCLEVNMNKDAV 125
>gi|221131649|ref|XP_002156561.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Hydra magnipapillata]
Length = 419
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 63/71 (88%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C++CGD++SG+HYGVPSCDGCRGFFKRS+RRN+ Y CK +G C++D+ RRNQCQ CR+ +
Sbjct: 35 CRICGDRSSGRHYGVPSCDGCRGFFKRSVRRNVSYACKFQGECVIDLKRRNQCQFCRYQR 94
Query: 124 CLQVKMNRDAM 134
CL+V MN++A+
Sbjct: 95 CLKVGMNKNAV 105
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 145 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 204
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 205 ACRLKKCLEVNMNKDAV 221
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 4/96 (4%)
Query: 41 LFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC 100
L +S+S FP + I +D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVC
Sbjct: 141 LRLSLSPSFPSLLSGRI--LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVC 198
Query: 101 K--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
K +G C VD T RNQC+ACR KCL+V MN+DA+
Sbjct: 199 KSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAV 234
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +Y CK R G CIVD T RNQC+A
Sbjct: 31 DIPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRNRQYSCKSRSSGQCIVDKTHRNQCRA 90
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC V MNRDA+
Sbjct: 91 CRLRKCFDVGMNRDAV 106
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 62/78 (79%), Gaps = 3/78 (3%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER---GHCIVDVTRRNQC 116
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK R G C VD T RNQC
Sbjct: 37 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKNRSGGGPCPVDKTHRNQC 96
Query: 117 QACRFSKCLQVKMNRDAM 134
+ACR KCLQV MN+DA+
Sbjct: 97 RACRLKKCLQVDMNKDAV 114
>gi|241630969|ref|XP_002410230.1| nuclear receptor, putative [Ixodes scapularis]
gi|215503353|gb|EEC12847.1| nuclear receptor, putative [Ixodes scapularis]
Length = 100
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 45 MSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERG 104
M P G+ + LC+VCGD+ASG+HYGV SCDGCRGFFKRS+RR L+YVCKE G
Sbjct: 1 MQVGAPAVASCGVR--EPLCRVCGDRASGRHYGVASCDGCRGFFKRSVRRQLQYVCKEGG 58
Query: 105 HCIVDVTRRNQCQACRFSKCLQVKMN 130
C+VDV RRNQCQACR +KCL+ M
Sbjct: 59 ACVVDVARRNQCQACRLAKCLRAAMR 84
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C+VD T RNQC+
Sbjct: 31 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGNQGGCLVDKTHRNQCR 90
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 91 ACRLKKCLEVNMNKDAV 107
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 4/84 (4%)
Query: 55 TGITS--MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDV 110
TG TS +D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD
Sbjct: 5 TGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRSYVCKSGNQGGCPVDK 64
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KCL+V MN+DA+
Sbjct: 65 THRNQCRACRLKKCLEVNMNKDAV 88
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 67/89 (75%), Gaps = 4/89 (4%)
Query: 50 PVFVWTGITS--MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGH 105
P V+ I+ +D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G
Sbjct: 11 PFLVFPAISGRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGG 70
Query: 106 CIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C VD T RNQC+ACR KCL+V MN+DA+
Sbjct: 71 CPVDKTHRNQCRACRLKKCLEVNMNKDAV 99
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 4/84 (4%)
Query: 55 TGITS--MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDV 110
TG TS +D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD
Sbjct: 5 TGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGSQGGCPVDK 64
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KCL+V MN+DA+
Sbjct: 65 THRNQCRACRLKKCLEVNMNKDAV 88
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 66/84 (78%), Gaps = 4/84 (4%)
Query: 55 TGITS--MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDV 110
TG TS +D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD
Sbjct: 5 TGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDK 64
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KCL+V MN+DA+
Sbjct: 65 THRNQCRACRLKKCLEVNMNKDAV 88
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/76 (65%), Positives = 62/76 (81%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVC K +G C+VD T RNQC+A
Sbjct: 34 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSKGGCMVDKTHRNQCRA 93
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+QV MN+DA+
Sbjct: 94 CRLAKCIQVGMNKDAV 109
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/78 (60%), Positives = 60/78 (76%), Gaps = 4/78 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK----ERGHCIVDVTRRNQ 115
+D+LC VCGD++SGKHYG+ SCDGC GFFKRSI N EY+CK ++G C +D T RNQ
Sbjct: 3 LDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHRNQ 62
Query: 116 CQACRFSKCLQVKMNRDA 133
C+ACR +KC + MN+DA
Sbjct: 63 CRACRLAKCFEANMNKDA 80
>gi|393908793|gb|EJD75208.1| hypothetical protein LOAG_17605 [Loa loa]
Length = 894
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 60/72 (83%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
D LC VCGDKASG HY VPSC+GC+GFF+R+I++ +EYVC ++G+CIVD RN+CQ+CR
Sbjct: 634 DRLCAVCGDKASGNHYSVPSCEGCKGFFRRTIQKKIEYVCYKQGNCIVDQKNRNRCQSCR 693
Query: 121 FSKCLQVKMNRD 132
F KCLQ+ M ++
Sbjct: 694 FQKCLQLGMRQE 705
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN +YVCK +G+ C +D T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRQYVCKNKGNGPCPIDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+QV MN+DA+
Sbjct: 72 ACRLKKCVQVDMNKDAV 88
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGSQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 23 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGSQGGCPVDKTHRNQCR 82
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 83 ACRLKKCLEVNMNKDAV 99
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 23 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGSQGGCPVDKTHRNQCR 82
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 83 ACRLKKCLEVNMNKDAV 99
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 35 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 94
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 95 ACRLKKCLEVNMNKDAV 111
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 23 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGTQGGCPVDKTHRNQCR 82
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 83 ACRLKKCLEVNMNKDAV 99
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/79 (59%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK----ERGHCIVDVTRRNQ 115
+D+LC VCGD++SGKHYG+ SCDGC GFFKRSI N EY+CK ++G C +D T RNQ
Sbjct: 5 LDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHRNQ 64
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC + MN+DA+
Sbjct: 65 CRACRLAKCFEANMNKDAV 83
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 49 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 108
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 109 ACRLKKCLEVNMNKDAV 125
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 9 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 68
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 69 ACRLKKCLEVNMNKDAV 85
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 5 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGSQGGCPVDKTHRNQCR 64
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 65 ACRLKKCLEVNMNKDAV 81
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 72 ACRLKKCLEVNMNKDAV 88
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVC K +G C+VD T RNQC+A
Sbjct: 34 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSKGGCMVDKTHRNQCRA 93
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+ V MN+DA+
Sbjct: 94 CRLAKCIHVGMNKDAV 109
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 72 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 131
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 132 ACRLKKCLEVNMNKDAV 148
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 28 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGGCMVDKTHRNQCRA 87
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 88 CRLAKCIQAGMNKDAV 103
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 137 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 196
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 197 CRACRLAKCFQSAMNKDAV 215
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
DV CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK + C+VD T RNQC+A
Sbjct: 72 DVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKAEVACVVDKTHRNQCRA 131
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC +V MN+DA+
Sbjct: 132 CRLKKCFEVGMNKDAV 147
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 72/106 (67%), Gaps = 7/106 (6%)
Query: 36 SLRTLLFISMSS--FFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIR 93
S+++ + I S FF G +D+ CKVC D +SGKHYG+ +CDGC GFFKRSIR
Sbjct: 10 SIKSFMKICFESIDFFHFISCVGRILLDIPCKVCEDHSSGKHYGIFACDGCAGFFKRSIR 69
Query: 94 RNLEYVCKER-----GHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
RN +YVCK R G C VD T RNQC+ACR SKCLQV MN++A+
Sbjct: 70 RNRQYVCKARGTGQEGSCTVDKTHRNQCRACRLSKCLQVGMNKEAV 115
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 4/84 (4%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDV 110
TG +D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C +D
Sbjct: 3 TGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGELKGRCPIDK 62
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR +KC Q MN+DA+
Sbjct: 63 THRNQCRACRLNKCFQSAMNKDAV 86
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 15 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 74
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 75 CRACRLAKCFQSAMNKDAV 93
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 42 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGGCMVDKTHRNQCRA 101
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 102 CRLAKCIQAGMNKDAV 117
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
DV CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK + C+VD T RNQC+A
Sbjct: 30 DVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSEVPCVVDKTHRNQCRA 89
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC +V MN+DA+
Sbjct: 90 CRLKKCFEVGMNKDAV 105
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/79 (59%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ C VCGD++SGKHYG+ SCDGC GFFKRSI N EY+CK +G C +D T RNQ
Sbjct: 23 LDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHHNREYICKAEGSMKGRCPIDKTHRNQ 82
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC + MNRDA+
Sbjct: 83 CRACRLAKCFEANMNRDAV 101
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/78 (62%), Positives = 57/78 (73%), Gaps = 4/78 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 32 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTHRNQ 91
Query: 116 CQACRFSKCLQVKMNRDA 133
C+ACR SKC Q MN+D
Sbjct: 92 CRACRLSKCFQSAMNKDG 109
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN Y+CK +G C VD T RNQC+
Sbjct: 23 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRIYLCKSGSQGGCPVDKTHRNQCR 82
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+DA+
Sbjct: 83 ACRLKKCLEVNMNKDAV 99
>gi|170585082|ref|XP_001897316.1| hypothetical protein [Brugia malayi]
gi|158595264|gb|EDP33831.1| conserved hypothetical protein [Brugia malayi]
Length = 784
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 61/72 (84%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGDKASG HY VPSC+GC+GFF+R+I++ +EY+C ++G+CI+D RN+CQ+CRF
Sbjct: 526 LCAICGDKASGNHYSVPSCEGCKGFFRRTIQKKIEYICYKQGNCIIDQKNRNRCQSCRFK 585
Query: 123 KCLQVKMNRDAM 134
KCLQ+ M ++++
Sbjct: 586 KCLQLGMRQESV 597
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
++LCKVCGD +SG+HYGV +CDGC GFF RS+RR++ Y CK G C VD RRNQCQACR
Sbjct: 6 EILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGGCTVDKKRRNQCQACR 65
Query: 121 FSKCLQVKMNRDAM 134
F KCL+VKMNR A+
Sbjct: 66 FKKCLEVKMNRFAV 79
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus griseus]
Length = 323
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+AC
Sbjct: 1 IPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRAC 60
Query: 120 RFSKCLQVKMNRDAM 134
R KCL+V MN+DA+
Sbjct: 61 RLKKCLEVNMNKDAV 75
>gi|358254993|dbj|GAA56686.1| nuclear hormone receptor family member nhr-67 [Clonorchis sinensis]
Length = 1106
Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 58/84 (69%), Gaps = 11/84 (13%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER-----------GHCIV 108
+D+ C+VC D +SGKHYG+ +CDGC GFFKRSIRRN +Y CK R G C V
Sbjct: 19 LDIPCRVCKDHSSGKHYGIYACDGCAGFFKRSIRRNRQYACKNRTANGTKLSTAVGGCRV 78
Query: 109 DVTRRNQCQACRFSKCLQVKMNRD 132
D + RNQC+ACR KCL+V MNRD
Sbjct: 79 DKSHRNQCRACRLKKCLEVGMNRD 102
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C +D T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDLKGRCPIDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC MN+DA+
Sbjct: 69 CRACRLNKCFIAAMNKDAV 87
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH-----CIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK +G+ CIVD T RN
Sbjct: 17 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGRCIVDKTHRN 76
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 77 QCRACRLRKCLEIGMNKDAV 96
>gi|18202151|sp|O76202.1|USP_CHOFU RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|3420010|gb|AAC31795.1| Ultraspiracle [Choristoneura fumiferana]
Length = 472
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 118 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQ 177
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 178 KCLACGMKREAV 189
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 31 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKATGDMKGRCPVDKTHRNQ 90
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR SKC Q MN+DA+
Sbjct: 91 CRACRLSKCFQASMNKDAV 109
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +Y+CK RG C VD T RNQC+A
Sbjct: 14 DIPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRGQGTCPVDKTHRNQCRA 73
Query: 119 CRFSKCLQVKMNRDAM 134
CR KCL+ MN+DA+
Sbjct: 74 CRLKKCLEAGMNKDAV 89
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 111 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCVIDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 171 KCLSCGMKREAV 182
>gi|256082368|ref|XP_002577429.1| zinc finger protein [Schistosoma mansoni]
gi|353232857|emb|CCD80213.1| putative zinc finger protein [Schistosoma mansoni]
Length = 408
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 60/85 (70%), Gaps = 10/85 (11%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH----------CIVD 109
+D+ C VC D +SGKHYG+ +CDGC GFFKRSIRRN +Y CK RG C VD
Sbjct: 7 LDIPCHVCEDHSSGKHYGIYACDGCAGFFKRSIRRNRQYTCKSRGTTIGSKSGIVVCRVD 66
Query: 110 VTRRNQCQACRFSKCLQVKMNRDAM 134
+ RNQC+ACR +KCL+V MN+DA+
Sbjct: 67 KSHRNQCRACRLTKCLEVGMNKDAV 91
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVC K +G C+VD T RNQC+A
Sbjct: 28 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSKGGCMVDKTHRNQCRA 87
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 88 CRLAKCIQAGMNKDAV 103
>gi|268536318|ref|XP_002633294.1| C. briggsae CBR-NHR-67 protein [Caenorhabditis briggsae]
Length = 426
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH-----CIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK +G+ CIVD T RN
Sbjct: 17 VDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGNFDEGRCIVDKTHRN 76
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 77 QCRACRLRKCLEIGMNKDAV 96
>gi|48475404|gb|AAT44330.1| USP [Plodia interpunctella]
Length = 415
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 120 KCLACGMKREAV 131
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 28 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGGCMVDKTHRNQCRA 87
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 88 CRLAKCIQAGMNKDAV 103
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVC K +G C+VD T RNQC+A
Sbjct: 28 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSKGGCMVDKTHRNQCRA 87
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 88 CRLAKCIQAGMNKDAV 103
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/79 (58%), Positives = 58/79 (73%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK----ERGHCIVDVTRRNQ 115
+D+ C VCGD++SGKHYG+ SCDGC GFFKRSI N Y+CK +G C +D T RNQ
Sbjct: 7 LDIPCLVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNRRYICKVQGAMKGRCPIDKTHRNQ 66
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC + MNRDA+
Sbjct: 67 CRACRLAKCFEANMNRDAV 85
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 3 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGGCMVDKTHRNQCRA 62
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 63 CRLAKCIQAGMNKDAV 78
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 28 DIPCKVCRDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGGCMVDKTHRNQCRA 87
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC+Q MN+DA+
Sbjct: 88 CRLAKCIQAGMNKDAV 103
>gi|357621270|gb|EHJ73160.1| ultraspiracle-like protein [Danaus plexippus]
Length = 423
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 115 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 174
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 175 KCLACGMKREAV 186
>gi|256089112|ref|XP_002580660.1| retinoic acid receptor RXR [Schistosoma mansoni]
gi|350645791|emb|CCD59553.1| retinoic acid receptor RXR [Schistosoma mansoni]
Length = 743
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 60/77 (77%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
T+++ +C +CGDKASGKHYGV SC+GC+GFFKR++R+ L YVC+E G C VD +R +CQ
Sbjct: 265 TNLNPICVICGDKASGKHYGVISCEGCKGFFKRTVRKQLVYVCRESGQCPVDRRKRTRCQ 324
Query: 118 ACRFSKCLQVKMNRDAM 134
CRF +CL M ++A+
Sbjct: 325 HCRFEQCLAKGMKKEAV 341
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-----ERGHCIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK + G C+VD T RN
Sbjct: 16 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHRN 75
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 76 QCRACRLRKCLEIGMNKDAV 95
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 62/80 (77%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-----ERGHCIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK + G C+VD T RN
Sbjct: 10 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGFDEGRCVVDKTHRN 69
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 70 QCRACRLRKCLEIGMNKDAV 89
>gi|281334019|gb|ADA61199.1| ultraspiracle protein [Plutella xylostella]
gi|347810676|gb|AEP25407.1| ultraspiracle protein [Plutella xylostella]
Length = 414
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 59 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 118
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 119 KCLACGMKREAV 130
>gi|4322668|gb|AAD16119.1| retinoic acid receptor RXR [Schistosoma mansoni]
Length = 743
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 60/77 (77%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
T+++ +C +CGDKASGKHYGV SC+GC+GFFKR++R+ L YVC+E G C VD +R +CQ
Sbjct: 265 TNLNPICVICGDKASGKHYGVISCEGCKGFFKRTVRKQLVYVCRESGQCPVDRRKRTRCQ 324
Query: 118 ACRFSKCLQVKMNRDAM 134
CRF +CL M ++A+
Sbjct: 325 HCRFEQCLAKGMKKEAV 341
>gi|388325219|gb|AFK27933.1| ultraspiracle [Spodoptera litura]
Length = 414
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 57/71 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDA 133
KCL M R+A
Sbjct: 120 KCLACGMKREA 130
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-----ERGHCIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK E G C+VD T RN
Sbjct: 19 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHRN 78
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR +KCL++ MN++A+
Sbjct: 79 QCRACRLTKCLEIGMNKEAV 98
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 150 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 209
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+Q+ MN+DA+
Sbjct: 210 ACRLKKCMQMGMNKDAV 226
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-----ERGHCIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK E G C+VD T RN
Sbjct: 22 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHRN 81
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR +KCL++ MN++A+
Sbjct: 82 QCRACRLTKCLEIGMNKEAV 101
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-----ERGHCIVDVTRRN 114
+DV C+VC D +SGKHYG+ SCDGC GFFKRSIRR+ +YVCK E G C+VD T RN
Sbjct: 7 LDVPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNRGGGEEGKCLVDKTHRN 66
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR +KCL++ MN++A+
Sbjct: 67 QCRACRLTKCLEIGMNKEAV 86
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 141 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 200
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+Q+ MN+DA+
Sbjct: 201 ACRLKKCMQMGMNKDAV 217
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 140 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 199
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+Q+ MN+DA+
Sbjct: 200 ACRLKKCMQMGMNKDAV 216
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 143 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 202
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+Q+ MN+DA+
Sbjct: 203 ACRLKKCMQMGMNKDAV 219
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 141 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 200
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC+Q+ MN+DA+
Sbjct: 201 ACRLKKCMQMGMNKDAV 217
>gi|27372315|dbj|BAC53670.1| ultraspiracle [Chilo suppressalis]
Length = 410
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 59 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 118
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 119 KCLACGMKREAV 130
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 81 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERRCVVDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 141 KCLMCGMKREAV 152
>gi|339236037|ref|XP_003379573.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
gi|316977756|gb|EFV60819.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
Length = 502
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E HC++D +RN+CQ CR+
Sbjct: 173 VCNICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRESRHCVIDKRQRNRCQYCRYQ 232
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 233 KCLIMGMKREAV 244
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQ 117
+D+ CKVCGD +SGKHY + +CDGC GFFKRSIRRN +YVC K+ G CI+D T RNQC+
Sbjct: 34 LDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCR 93
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC V MN+DA+
Sbjct: 94 ACRLKKCQNVGMNKDAV 110
>gi|195447730|ref|XP_002071344.1| GK25746 [Drosophila willistoni]
gi|194167429|gb|EDW82330.1| GK25746 [Drosophila willistoni]
Length = 483
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 90 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 149
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 150 KCLSCGMKREAV 161
>gi|198470596|ref|XP_001355352.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
gi|198145527|gb|EAL32409.2| GA18146 [Drosophila pseudoobscura pseudoobscura]
Length = 487
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 92 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 151
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 152 KCLSCGMKREAV 163
>gi|195397487|ref|XP_002057360.1| GJ16389 [Drosophila virilis]
gi|194147127|gb|EDW62846.1| GJ16389 [Drosophila virilis]
Length = 499
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 97 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLAYACRENRNCIIDKRQRNRCQYCRYQ 156
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 157 KCLSCGMKREAV 168
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQ 117
+D+ CKVCGD +SGKHY + +CDGC GFFKRSIRRN +YVC K+ G CI+D T RNQC+
Sbjct: 34 LDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCR 93
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC V MN+DA+
Sbjct: 94 ACRLKKCQNVGMNKDAV 110
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL+Y C+ + +C +D RNQCQ CR K
Sbjct: 166 CGVCGDKSSGKHYGVNTCEGCKSFFKRSVRRNLQYTCRAKRNCSIDQHHRNQCQHCRLKK 225
Query: 124 CLQVKMNRDAM 134
CL+ M +DA+
Sbjct: 226 CLKAGMRKDAV 236
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
+D+ CKVCGD++S KHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 12 LDIPCKVCGDRSSRKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 71
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL+V MN+ A+
Sbjct: 72 ACRLKKCLEVNMNKGAV 88
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ C+VC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK + G C+VD T RNQC+A
Sbjct: 7 DIPCRVCQDHSSGKHYGIFACDGCAGFFKRSIRRNRQYVCKAKSEGACLVDKTHRNQCRA 66
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC++V MN+DA+
Sbjct: 67 CRLRKCVEVGMNKDAV 82
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 94 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 153
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 154 ACRLKKCLQMGMNKDAV 170
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/72 (56%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCVIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 163 KCLSCGMKREAV 174
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 4/77 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 5 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTHRNQ 64
Query: 116 CQACRFSKCLQVKMNRD 132
C+ACR SKC Q MN+D
Sbjct: 65 CRACRLSKCFQSAMNKD 81
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 24 FILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
F + G T++ S T S S + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 49 FSMGGHGTLLSPSGNTPNKSSTSPYPPNHPLSGSKH---LCSICGDRASGKHYGVYSCEG 105
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+A+
Sbjct: 106 CKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 156
>gi|195046041|ref|XP_001992077.1| GH24408 [Drosophila grimshawi]
gi|193892918|gb|EDV91784.1| GH24408 [Drosophila grimshawi]
Length = 528
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 116 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 175
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 176 KCLSCGMKREAV 187
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 4/77 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 5 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAAGELKGRCPVDKTHRNQ 64
Query: 116 CQACRFSKCLQVKMNRD 132
C+ACR SKC Q MN+D
Sbjct: 65 CRACRLSKCFQSAMNKD 81
>gi|195130249|ref|XP_002009565.1| GI15428 [Drosophila mojavensis]
gi|193908015|gb|EDW06882.1| GI15428 [Drosophila mojavensis]
Length = 484
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 86 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 145
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 146 KCLTCGMKREAV 157
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 111 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERRCVVDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 171 KCLACGMKREAV 182
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 83 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERRCVVDKRQRNRCQYCRYQ 142
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 143 KCLACGMKREAV 154
>gi|409178665|gb|AFV25498.1| ultraspiracle, partial [Drosophila limbata]
Length = 442
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 66 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 125
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 126 KCLSCGMKREAV 137
>gi|409178663|gb|AFV25497.1| ultraspiracle, partial [Drosophila funebris]
Length = 433
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 54 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 113
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 114 KCLSCGMKREAV 125
>gi|409178671|gb|AFV25501.1| ultraspiracle, partial [Drosophila hydei]
Length = 443
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 65 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 124
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 125 KCLTCGMKREAV 136
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 4/84 (4%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERG----HCIVDV 110
+G +D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN Y+CK RG C VD
Sbjct: 34 SGRILLDIPCKVCFDHSSGKHYGIYACDGCAGFFKRSIRRNRHYICKGRGTQANQCPVDK 93
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KCL+ MNR+A+
Sbjct: 94 THRNQCRACRLRKCLEAGMNREAV 117
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
DV CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +YVCK R C VD T RNQC+A
Sbjct: 14 DVPCKVCQDHSSGKHYGIYACDGCAGFFKRSIRRNRQYVCKSRNQDKCPVDKTHRNQCRA 73
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KC++ MNRDA+
Sbjct: 74 CRLNKCVKSGMNRDAV 89
>gi|19919404|gb|AAM08268.1|AF438229_1 nuclear receptor RXR [Dirofilaria immitis]
gi|19919406|gb|AAM08269.1|AF438230_1 nuclear receptor RXR [Dirofilaria immitis]
Length = 474
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 64/83 (77%), Gaps = 6/83 (7%)
Query: 58 TSMDV------LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
TSM+V +C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y+C+E +CI+D
Sbjct: 117 TSMNVGTITKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLIYLCRENRNCIIDKR 176
Query: 112 RRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KC + M R+A+
Sbjct: 177 QRNRCQYCRYRKCQSMGMKREAV 199
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 33 LLCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGLCPVDKAHRNQCQACR 92
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 93 LKKCLQAGMNKDAV 106
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC--KERGHCIVDVTRRNQCQ 117
+D+ CKVCGD +SGKHY + +CDGC GFFKRSIRRN +YVC K+ G CI+D T RNQC+
Sbjct: 34 LDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCR 93
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KC V MN+DA+
Sbjct: 94 ACRLKKCQNVGMNKDAV 110
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 33 LLCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGLCPVDKAHRNQCQACR 92
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 93 LKKCLQAGMNKDAV 106
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 33 LLCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGLCPVDKAHRNQCQACR 92
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 93 LKKCLQAGMNKDAV 106
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
Query: 24 FILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
F + G +++ S T S S + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 49 FSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSGSKH---LCSICGDRASGKHYGVYSCEG 105
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+A+
Sbjct: 106 CKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAV 156
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%), Gaps = 5/85 (5%)
Query: 55 TGITS---MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVD 109
G++S +D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +Y+CK R G C VD
Sbjct: 2 AGVSSRILVDIPCKVCSDHSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSRSQGLCPVD 61
Query: 110 VTRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KC++ MN+DA+
Sbjct: 62 KTHRNQCRACRLKKCVECGMNKDAV 86
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIR N Y CK C VD +RRNQC+
Sbjct: 9 LDIPCKVCGDRSSGKHYGVYTCDGCSGFFKRSIRHNRNYTCKSPSSAPCPVDKSRRNQCR 68
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR +C QV MN+DA+
Sbjct: 69 ACRLQRCFQVNMNKDAV 85
>gi|14624971|gb|AAG01569.1| ultraspiracle protein [Lucilia cuprina]
Length = 467
Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 89 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQ 148
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 149 KCLACGMKREAV 160
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Query: 53 VWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDV 110
++TG D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +Y+CK + G C VD
Sbjct: 5 MFTGRILYDIPCKVCQDHSSGKHYGIFACDGCAGFFKRSIRRSRQYLCKAKSEGSCTVDK 64
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR KC++ MN+DA+
Sbjct: 65 THRNQCRACRLKKCVEAGMNKDAV 88
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER----GHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSI RN Y CK++ G+C +D T RNQ
Sbjct: 45 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIHRNRVYTCKQQGKDGGNCPIDKTHRNQ 104
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR KC +MN+DA+
Sbjct: 105 CRACRLKKCFDAQMNKDAV 123
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E HC++D +RN+CQ CR+
Sbjct: 88 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKHCLIDKRQRNRCQYCRYQ 147
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 148 KCLTMGMKREAV 159
>gi|312118884|ref|XP_003151630.1| DR-78 [Loa loa]
gi|307753205|gb|EFO12439.1| hypothetical protein LOAG_16094 [Loa loa]
Length = 149
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 62/74 (83%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
D LC VCGDKASG HY VPSC+GC+GFF+R+I++ +EYVC ++G+CIVD RN+CQ+CR
Sbjct: 62 DRLCAVCGDKASGNHYSVPSCEGCKGFFRRTIQKKIEYVCYKQGNCIVDQKNRNRCQSCR 121
Query: 121 FSKCLQVKMNRDAM 134
F KCLQ+ M ++++
Sbjct: 122 FKKCLQLGMRQESV 135
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E HC++D +RN+CQ CR+
Sbjct: 74 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKHCLIDKRQRNRCQYCRYQ 133
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 134 KCLTMGMKREAV 145
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 201
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 202 KCLAMGMKREAV 213
>gi|146400035|gb|ABQ28715.1| RXR receptor [Brugia malayi]
Length = 465
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/79 (54%), Positives = 63/79 (79%), Gaps = 1/79 (1%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
GIT+ + C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y+C+E +CI+D +RN+
Sbjct: 125 GITTKHI-CAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLIYLCRENRNCIIDKRQRNR 183
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR+ KC + M R+A+
Sbjct: 184 CQYCRYRKCQSMGMKREAV 202
>gi|353231555|emb|CCD77973.1| putative coup transcription factor [Schistosoma mansoni]
Length = 1064
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RR L Y C+ C +D+ RNQCQ CRF K
Sbjct: 389 CVVCGDKSSGKHYGQYTCEGCKSFFKRSVRRQLNYTCRNNKQCPIDINHRNQCQYCRFQK 448
Query: 124 CLQVKMNRDAM 134
C++V M ++A+
Sbjct: 449 CIKVGMRKEAV 459
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 145 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 204
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 205 ACRLKKCLQMGMNKDAV 221
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+NL Y C+E CI+D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 163 KCLTMGMKREAV 174
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S+ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 152 SLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 211
Query: 118 ACRFSKCLQVKMNRD 132
ACR KC+Q+ MN+D
Sbjct: 212 ACRLKKCMQMGMNKD 226
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+NL Y C+E CI+D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKNLSYACREENKCIIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 163 KCLTMGMKREAV 174
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 184 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 243
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 244 ACRLKKCLQMGMNKDAV 260
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 259 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 318
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 319 KCLAMGMKREAV 330
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 3/78 (3%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE---RGHCIVDVTRRNQC 116
+D+ CKVCGD++SGKHYG+ +CDGC GFFKRSIRRN Y C+ +G+C VD RNQC
Sbjct: 25 LDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQC 84
Query: 117 QACRFSKCLQVKMNRDAM 134
++CR KC +V MN+DA+
Sbjct: 85 RSCRLKKCFEVTMNKDAV 102
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
DV CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK + C+VD T RNQC+A
Sbjct: 30 DVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSETPCMVDKTHRNQCRA 89
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC +V MN+DA+
Sbjct: 90 CRLKKCFEVGMNKDAV 105
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH----CIVDVTRRNQ 115
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSI R YVCK++G C +D T RNQ
Sbjct: 51 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIHRGRVYVCKQQGKGGGDCPIDKTHRNQ 110
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR KC + +MN+DA+
Sbjct: 111 CRACRLRKCFEAQMNKDAV 129
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGH--CIVDVTRRNQCQA 118
DV CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK + C+VD T RNQC+A
Sbjct: 30 DVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSKSETPCMVDKTHRNQCRA 89
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC +V MN+DA+
Sbjct: 90 CRLKKCFEVGMNKDAV 105
>gi|324514717|gb|ADY45963.1| Retinoic acid receptor RXR-gamma, partial [Ascaris suum]
Length = 473
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 61/78 (78%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+TS +C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+C
Sbjct: 131 LTSAKHICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYSCRENRNCVIDKRQRNRC 190
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KC + M R+A+
Sbjct: 191 QYCRYRKCKNMGMKREAV 208
>gi|195348475|ref|XP_002040774.1| GM22351 [Drosophila sechellia]
gi|194122284|gb|EDW44327.1| GM22351 [Drosophila sechellia]
Length = 986
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 491 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 550
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 551 KKCLSAGMSRDSV 563
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/70 (54%), Positives = 57/70 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C++CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 159 ICQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVIDKRQRNRCQYCRYQ 218
Query: 123 KCLQVKMNRD 132
KCL + M R+
Sbjct: 219 KCLAMGMKRE 228
>gi|328710767|ref|XP_001952732.2| PREDICTED: ecdysone-induced protein 78C-like [Acyrthosiphon pisum]
Length = 570
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C+VCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 149 VPCRVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 208
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 209 KKCLTVGMSRDSV 221
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/107 (47%), Positives = 64/107 (59%), Gaps = 9/107 (8%)
Query: 28 GVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGF 87
G T V S ++LF S G T LC VCGDKASG+HYG SC+GC+GF
Sbjct: 120 GTPTAVMMSPNSVLFTPGS---------GDTKPQELCVVCGDKASGRHYGAISCEGCKGF 170
Query: 88 FKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
FKRSIR+NL YVC+ C ++ RN+CQ CR KCL V M +++
Sbjct: 171 FKRSIRKNLGYVCRSSKECPINKHHRNRCQYCRLQKCLSVGMRSESV 217
>gi|351702679|gb|EHB05598.1| Retinoic acid receptor RXR-gamma-A [Heterocephalus glaber]
Length = 616
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 211 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 270
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 271 KCLAMGMKREAV 282
>gi|194875414|ref|XP_001973593.1| GG16168 [Drosophila erecta]
gi|190655376|gb|EDV52619.1| GG16168 [Drosophila erecta]
Length = 863
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 356 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 415
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 416 KKCLSAGMSRDSV 428
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 143 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 202
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 203 KCLAMGMKREAV 214
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 143 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 202
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 203 KCLAMGMKREAV 214
>gi|195495655|ref|XP_002095359.1| GE19737 [Drosophila yakuba]
gi|194181460|gb|EDW95071.1| GE19737 [Drosophila yakuba]
Length = 876
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 376 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 435
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 436 KKCLSAGMSRDSV 448
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S +LC+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQ
Sbjct: 22 SPGLLCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGSGTCPVDKAHRNQCQ 81
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ MN+DA+
Sbjct: 82 ACRLRKCLQSGMNKDAV 98
>gi|391334318|ref|XP_003741552.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Metaseiulus
occidentalis]
Length = 574
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGDKASGKHYGV SC+GC+GFFKR++R++L Y C+E C++D +RN+CQ CR+
Sbjct: 256 LCSICGDKASGKHYGVFSCEGCKGFFKRTVRKDLTYACREERRCLIDKRQRNRCQYCRYQ 315
Query: 123 KCLQVKMNRDAM 134
KCLQ M R+A+
Sbjct: 316 KCLQCGMKREAV 327
>gi|198466632|ref|XP_001354071.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
gi|198150690|gb|EAL29809.2| GA14768 [Drosophila pseudoobscura pseudoobscura]
Length = 897
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 405 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 464
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 465 KKCLSAGMSRDSV 477
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 428 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 487
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 488 KCLAMGMKREAV 499
>gi|194749053|ref|XP_001956954.1| GF24303 [Drosophila ananassae]
gi|190624236|gb|EDV39760.1| GF24303 [Drosophila ananassae]
Length = 892
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 404 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 463
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 464 KKCLSAGMSRDSV 476
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|514833|gb|AAA19975.1| nuclear hormone receptor superfamily protein [Drosophila
melanogaster]
Length = 864
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 365 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 424
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 425 KKCLSAGMSRDSV 437
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE---RGHCIVDVTRRNQC 116
+D+ CKVCGD++SGKHYG+ +CDGC GFFKRSIRRN Y C+ +G+C VD RNQC
Sbjct: 4 LDIPCKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQC 63
Query: 117 QACRFSKCLQVKMNRDAM 134
++CR KC V MN+DA+
Sbjct: 64 RSCRLKKCFDVSMNKDAV 81
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|307170857|gb|EFN62968.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 226
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK----ERGHCIVDVTRRNQ 115
+D+LC VCGD++SGKHYG+ SCDGC GFFKRSI N EY+CK ++G C +D T RNQ
Sbjct: 55 LDILCDVCGDRSSGKHYGIYSCDGCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHRNQ 114
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC + MN+D +
Sbjct: 115 CRACRLAKCFEANMNKDEV 133
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 92 RLRKCFEVGMNKDAV 106
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 25 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V MN+DA+
Sbjct: 85 RLRKCFEVGMNKDAV 99
>gi|358338345|dbj|GAA56711.1| retinoic acid receptor RXR-alpha [Clonorchis sinensis]
Length = 675
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 64/91 (70%)
Query: 44 SMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER 103
S++ PV ++ +C +CGD+ASG+HYGV SC+GC+GFFKR++R+ ++YVC+
Sbjct: 241 SLAPLGPVAPAADTPTVPTICVICGDRASGRHYGVVSCEGCKGFFKRTVRKQVQYVCRGS 300
Query: 104 GHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
G C VD +R +CQACR+ +C+ M R+A+
Sbjct: 301 GDCPVDRRKRTRCQACRYDRCILKGMKREAV 331
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 67/90 (74%), Gaps = 3/90 (3%)
Query: 45 MSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERG 104
M+S+ P +G LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E
Sbjct: 87 MASYPPNHPLSGSKH---LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREER 143
Query: 105 HCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
+CI+D +RN+CQ CR++KCL + M R+A+
Sbjct: 144 NCIIDKRQRNRCQFCRYNKCLAMGMKREAV 173
>gi|363730987|ref|XP_425924.3| PREDICTED: hepatocyte nuclear factor 4-gamma [Gallus gallus]
Length = 512
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+GI+S LC +CGD+A+GKHYG SCDGC+GFF+RSIR+N Y C+ C+VD +RN
Sbjct: 111 SGISS---LCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCRFSRQCVVDKDKRN 167
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ CR KC + M ++A+
Sbjct: 168 QCRYCRLKKCFRAGMKKEAV 187
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 86 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQ 145
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 146 KCLNMGMKREAV 157
>gi|56131040|gb|AAV80236.1| TR4/TR2 [Schistosoma mansoni]
Length = 1943
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG+HYGV SC+GC+GFFKRSIR ++ YVC+ +C+V+ RN+CQ CR K
Sbjct: 604 CKVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSEQNCLVNKAYRNRCQYCRLQK 663
Query: 124 CLQVKMNRDAM 134
CL V M +A+
Sbjct: 664 CLAVGMRSEAV 674
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/74 (62%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LC+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 30 LLCRVCGDSSSGKHYGIFACNGCSGFFKRSVRRKLIYRCQAGTGLCPVDKAHRNQCQACR 89
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 90 LKKCLQTGMNKDAV 103
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 139 KCLTMGMKREAV 150
>gi|17541682|ref|NP_502094.1| Protein NHR-67 [Caenorhabditis elegans]
gi|17369901|sp|Q9XVV3.1|NHR67_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-67
gi|3874154|emb|CAA97428.1| Protein NHR-67 [Caenorhabditis elegans]
Length = 416
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER-----GHCIVDVTRRN 114
+DV C+VC D +SGKHY + SCDGC GFFKRSIRR+ +YVCK + G C VD T RN
Sbjct: 17 LDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHRN 76
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 77 QCRACRLRKCLEIGMNKDAV 96
>gi|256090626|ref|XP_002581285.1| Tr4/Tr2 (homologue) [Schistosoma mansoni]
Length = 1532
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG+HYGV SC+GC+GFFKRSIR ++ YVC+ +C+V+ RN+CQ CR K
Sbjct: 549 CKVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSEQNCLVNKAYRNRCQYCRLQK 608
Query: 124 CLQVKMNRDAM 134
CL V M +A+
Sbjct: 609 CLAVGMRSEAV 619
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 27 PGVST---MVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
P +ST + +S T L S S + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 69 PSISTPPFTIGSSNTTGLSTSPSQYPPSHPLSGSKH---LCSICGDRASGKHYGVYSCEG 125
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E C +D +RN+CQ CR+ KCL + M R+A+
Sbjct: 126 CKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLTMGMKREAV 176
>gi|121484050|gb|ABM54351.1| NR2E1 [Pan paniscus]
gi|122892562|gb|ABM67332.1| NR2E1 [Hylobates klossii]
Length = 77
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%), Gaps = 2/75 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQ 117
+D+ CKVCGD++SGKHYGV +CDGC GFFKRSIRRN YVCK +G C VD T RNQC+
Sbjct: 3 LDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCR 62
Query: 118 ACRFSKCLQVKMNRD 132
ACR KCL+V MN+D
Sbjct: 63 ACRLKKCLEVNMNKD 77
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 94 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 153
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 154 KCLSMGMKREAV 165
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C++D +RN+CQ CR+
Sbjct: 81 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCLQ+ M R+A+
Sbjct: 141 KCLQMGMKREAV 152
>gi|28396034|gb|AAO39180.1| nuclear receptor NHR-67 [Caenorhabditis elegans]
Length = 409
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 60/80 (75%), Gaps = 5/80 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER-----GHCIVDVTRRN 114
+DV C+VC D +SGKHY + SCDGC GFFKRSIRR+ +YVCK + G C VD T RN
Sbjct: 10 LDVDCRVCEDHSSGKHYSIFSCDGCAGFFKRSIRRHRQYVCKNKGSPSEGQCKVDKTHRN 69
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ACR KCL++ MN+DA+
Sbjct: 70 QCRACRLRKCLEIGMNKDAV 89
>gi|270010979|gb|EFA07427.1| hepatocyte nuclear factor 4 [Tribolium castaneum]
Length = 502
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G+ M C +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ +CIVD +RNQ
Sbjct: 65 GVAQMSQHCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFSRNCIVDKDKRNQ 124
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ CR KC + M ++A+
Sbjct: 125 CRYCRLRKCFKAGMKKEAV 143
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGDKASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 67 LCSICGDKASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCLIDKRQRNRCQYCRYQ 126
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 127 KCLVMGMKREAV 138
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C+E +CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 139 KCLTMGMKREAV 150
>gi|195576854|ref|XP_002078288.1| GD23369 [Drosophila simulans]
gi|194190297|gb|EDX03873.1| GD23369 [Drosophila simulans]
Length = 468
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 9 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHRNQ 68
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+DA+
Sbjct: 69 CRACRLAKCFQSAMNKDAV 87
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C+E +CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 139 KCLTMGMKREAV 150
>gi|350644434|emb|CCD60831.1| nuclear hormone receptor,putative [Schistosoma mansoni]
Length = 1592
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG+HYGV SC+GC+GFFKRSIR ++ YVC+ +C+V+ RN+CQ CR K
Sbjct: 604 CKVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSEQNCLVNKAYRNRCQYCRLQK 663
Query: 124 CLQVKMNRDAM 134
CL V M +A+
Sbjct: 664 CLAVGMRSEAV 674
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 94 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCIIDKRQRNRCQYCRYQ 153
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 154 KCLSMGMKREAV 165
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 104 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 163
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 164 KCLAMGMKREAV 175
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 94 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 153
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 154 KCLSMGMKREAV 165
>gi|326917784|ref|XP_003205176.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Meleagris
gallopavo]
Length = 453
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+GI+S LC +CGD+A+GKHYG SCDGC+GFF+RSIR+N Y C+ C+VD +RN
Sbjct: 52 SGISS---LCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYTCRFSRQCVVDKDKRN 108
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ CR KC + M ++A+
Sbjct: 109 QCRYCRLKKCFRAGMKKEAV 128
>gi|195342846|ref|XP_002038009.1| GM18579 [Drosophila sechellia]
gi|194132859|gb|EDW54427.1| GM18579 [Drosophila sechellia]
Length = 184
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 60/84 (71%), Gaps = 4/84 (4%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDV 110
G +D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD
Sbjct: 4 AGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDK 63
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
T RNQC+ACR +KC Q MN+DA+
Sbjct: 64 THRNQCRACRLAKCFQSAMNKDAV 87
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 59/75 (78%), Gaps = 2/75 (2%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK--ERGHCIVDVTRRNQCQAC 119
V CKVC D +SGKHYG+ +CDGC GFFKRSIRR+ +YVCK ++G C+VD T RNQC+AC
Sbjct: 32 VPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRAC 91
Query: 120 RFSKCLQVKMNRDAM 134
R KC V MN+DA+
Sbjct: 92 RLRKCFDVGMNKDAV 106
>gi|410591545|gb|AFV74664.1| estradiol receptor-like protein 2, partial [Portunus
trituberculatus]
Length = 235
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 27 PGVST---MVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
P +ST + +S T L S + + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 93 PSISTSPFTIGSSNTTGLSTSPTQYPPSHPLSGSKH---LCSICGDRASGKHYGVYSCEG 149
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E C +D +RN+CQ CR+ KCL + M R+A+
Sbjct: 150 CKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLSMGMKREAV 200
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 191 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 249
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 250 NQCQACRLKKCLQAGMNQDAV 270
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 87 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 146
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 147 KCLAMGMKREAV 158
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 109 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 168
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 169 KCLAMGMKREAV 180
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C+E +CI+D +RN+CQ CR+
Sbjct: 34 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREEKNCIIDKRQRNRCQYCRYQ 93
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 94 KCLTMGMKREAV 105
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 53 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 112
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 113 RLKKCFRVGMRKEAV 127
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 109 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 168
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 169 KCLAMGMKREAV 180
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 56 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 115
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 116 RLKKCFRVGMRKEAV 130
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 109 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 168
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 169 KCLAMGMKREAV 180
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 87 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 146
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 147 KCLAMGMKREAV 158
>gi|327271760|ref|XP_003220655.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1 [Anolis
carolinensis]
Length = 465
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
VLC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ CR
Sbjct: 58 VLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRL 117
Query: 122 SKCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 118 KKCFRAGMKKEAV 130
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 109 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 168
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 169 KCLAMGMKREAV 180
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 243 TGV-SASLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 301
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 302 NQCQACRLKKCLQAGMNQDAV 322
>gi|195170932|ref|XP_002026265.1| GL24671 [Drosophila persimilis]
gi|194111160|gb|EDW33203.1| GL24671 [Drosophila persimilis]
Length = 527
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/72 (61%), Positives = 54/72 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 412 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 471
Query: 122 SKCLQVKMNRDA 133
KCL M+RD+
Sbjct: 472 KKCLSAGMSRDS 483
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 87 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 146
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 147 KCLAMGMKREAV 158
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|358332828|dbj|GAA51438.1| nuclear receptor subfamily 2 group C member 2 [Clonorchis sinensis]
Length = 1789
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGDKASG+HYGV SC+GC+GFFKRSIR ++ YVC+ +C+V+ RN+CQ CR K
Sbjct: 670 CRVCGDKASGRHYGVVSCEGCKGFFKRSIRGHVSYVCRSDQNCLVNKAYRNRCQYCRLQK 729
Query: 124 CLQVKMNRDAM 134
CL V M +A+
Sbjct: 730 CLLVGMRSEAV 740
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 113
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 114 RLKKCFRVGMRKEAV 128
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 87 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 146
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 147 KCLAMGMKREAV 158
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 122 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 182 KCLAMGMKREAV 193
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|327271762|ref|XP_003220656.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 2 [Anolis
carolinensis]
Length = 475
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
VLC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ CR
Sbjct: 58 VLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYCRL 117
Query: 122 SKCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 118 KKCFRAGMKKEAV 130
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 108 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 167
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 168 KCLQAGMNQDAV 179
>gi|312190941|gb|ADQ43369.1| ultraspiracle [Nezara viridula]
Length = 402
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 82 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKQCLVDKRQRNRCQYCRYQ 141
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 142 KCLSMGMKREAV 153
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 248 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVGMGMCPVDKAHRNQCQACRLK 307
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 308 KCLQAGMNQDAV 319
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGDKASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 84 LCAICGDKASGKHYGVYSCEGCKGFFKRTVRKDLTYACREEKSCLVDRRQRNRCQYCRYQ 143
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 144 KCLAMGMKREAV 155
>gi|313240854|emb|CBY33143.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGD++SG HYG+ +C+GC+GFF+RS + N Y C G C+VD T RN+CQACR K
Sbjct: 42 CKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKK 101
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 102 CLGLGMSRDAV 112
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 63/80 (78%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G+ + +C +CGD+ASGKHYGV SC+GC+GFFKR++R++L+Y C++ C++D +RN
Sbjct: 212 SGVMTTKHICAICGDRASGKHYGVHSCEGCKGFFKRTVRKDLQYACRDEKSCLIDKRQRN 271
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR+ KCL + M R+A+
Sbjct: 272 RCQFCRYMKCLSMGMKREAV 291
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 95 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 154
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 155 KCLGMGMKREAV 166
>gi|226437755|gb|ACO56245.1| hepatocyte nuclear factor 4 alpha [Sparus aurata]
Length = 454
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 55/80 (68%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
TG LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RN
Sbjct: 42 TGHLGAGSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRN 101
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ CR KC + M ++A+
Sbjct: 102 QCRYCRLKKCFRAGMKKEAV 121
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 390 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 449
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 450 RLKKCFRVGMRKEAV 464
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 57 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 116
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 117 RLKKCFRVGMRKEAV 131
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 129 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 188
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 189 KCLGMGMKREAV 200
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 117 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 176
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 177 KCLGMGMKREAV 188
>gi|20302778|gb|AAM18898.1|AF391296_1 unknown [Branchiostoma floridae]
Length = 182
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 24 FILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
F +PGV+ V +S++ + + P T + +C++CGD+ASGKHYGV SC+G
Sbjct: 25 FGMPGVN-QVSSSMQEDVKPAQPLQSPRPSQTPMGLSKHICQICGDRASGKHYGVYSCEG 83
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KCL + M R+A+
Sbjct: 84 CKGFFKRTVRKDLTYACRDNRDCVIDKRQRNRCQYCRYQKCLAMGMKREAV 134
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C+++ RN+CQ CR +
Sbjct: 113 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECVINKHHRNRCQYCRLQR 172
Query: 124 CLQVKMNRDAM 134
C+ + M +D++
Sbjct: 173 CMALGMKQDSV 183
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ C VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C +D T RNQ
Sbjct: 30 LDIPCGVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAQGDFKGKCPIDKTHRNQ 89
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR KC + MN+DA+
Sbjct: 90 CRACRLKKCFEASMNKDAV 108
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 107 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 166
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 167 KCLGMGMKREAV 178
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
DV C VC D +SGKHYGV +CDGC GFFKRS+RR+ Y CK R G C+VD RNQC+A
Sbjct: 16 DVPCAVCRDHSSGKHYGVFACDGCAGFFKRSVRRDRRYACKARNSGACLVDKAHRNQCRA 75
Query: 119 CRFSKCLQVKMNRDAM 134
CR +KCL V MN+DA+
Sbjct: 76 CRLAKCLDVGMNKDAV 91
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 35 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 94
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 95 KCLQAGMNQDAV 106
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 189 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 248
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 249 KCLQAGMNQDAV 260
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C+++ RN+CQ CR +
Sbjct: 98 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECVINKHHRNRCQYCRLQR 157
Query: 124 CLQVKMNRDAM 134
C+ + M +D++
Sbjct: 158 CMALGMKQDSV 168
>gi|195339307|ref|XP_002036261.1| GM12759 [Drosophila sechellia]
gi|194130141|gb|EDW52184.1| GM12759 [Drosophila sechellia]
Length = 703
Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 199
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 200 KCFKAGMKKEAV 211
>gi|360045180|emb|CCD82728.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACRFS 122
C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CI+D RNQCQACR
Sbjct: 231 CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGNGLCIIDKAHRNQCQACRMK 290
Query: 123 KCLQVKMNRDAM 134
KC+++ MN+DA+
Sbjct: 291 KCIRMGMNKDAV 302
>gi|256086655|ref|XP_002579512.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACRFS 122
C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CI+D RNQCQACR
Sbjct: 231 CIVCGDISSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGNGLCIIDKAHRNQCQACRMK 290
Query: 123 KCLQVKMNRDAM 134
KC+++ MN+DA+
Sbjct: 291 KCIRMGMNKDAV 302
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 44/73 (60%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV SC+GC+ FFKRSIRRNL Y C+ C +D RNQCQ CR
Sbjct: 51 VDCVVCGDKSSGKHYGVFSCEGCKSFFKRSIRRNLNYSCRSNRECQIDQHHRNQCQYCRL 110
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 111 KKCFRVGMRKEAV 123
>gi|161076819|ref|NP_001097126.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
gi|157400121|gb|ABV53653.1| hepatocyte nuclear factor 4, isoform D [Drosophila melanogaster]
Length = 708
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 145 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 204
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 205 KCFKAGMKKEAV 216
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 67 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 126
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 127 QCQYCRLKKCLKVGMRREAV 146
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 55/74 (74%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+V C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 69 NVECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCR 128
Query: 121 FSKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 129 LKKCLKVGMRREAV 142
>gi|194858671|ref|XP_001969229.1| GG24056 [Drosophila erecta]
gi|190661096|gb|EDV58288.1| GG24056 [Drosophila erecta]
Length = 704
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 141 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 200
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 201 KCFKAGMKKEAV 212
>gi|417347487|gb|AFX60116.1| nuclear receptor USP isoform 1 [Spodoptera frugiperda]
Length = 466
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 112 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 171
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 172 KCLACGMKREAV 183
>gi|195577679|ref|XP_002078696.1| GD22387 [Drosophila simulans]
gi|194190705|gb|EDX04281.1| GD22387 [Drosophila simulans]
Length = 703
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 199
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 200 KCFKAGMKKEAV 211
>gi|195473133|ref|XP_002088850.1| GE10817 [Drosophila yakuba]
gi|194174951|gb|EDW88562.1| GE10817 [Drosophila yakuba]
Length = 703
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 140 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 199
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 200 KCFKAGMKKEAV 211
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 70 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 129
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 130 QCQYCRLKKCLKVGMRREAV 149
>gi|313233694|emb|CBY09864.1| unnamed protein product [Oikopleura dioica]
Length = 553
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C+VCGD+ASG+HYGV SC+GC+GFFKRSIR+ L Y C+ C V +RN+CQACRF K
Sbjct: 94 CEVCGDRASGRHYGVKSCEGCKGFFKRSIRKKLNYTCRWNADCPVTKLQRNRCQACRFFK 153
Query: 124 CLQVKMNRDAM 134
C+ V M D++
Sbjct: 154 CVSVGMRADSV 164
>gi|198472026|ref|XP_001355813.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
gi|198139573|gb|EAL32872.2| GA21689 [Drosophila pseudoobscura pseudoobscura]
Length = 686
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 143 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 202
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 203 KCFKAGMKKEAV 214
>gi|195443458|ref|XP_002069434.1| GK18664 [Drosophila willistoni]
gi|194165519|gb|EDW80420.1| GK18664 [Drosophila willistoni]
Length = 691
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 128 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 187
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 188 KCFKAGMKKEAV 199
>gi|47229086|emb|CAG03838.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RNQC+ CR
Sbjct: 51 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLK 110
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 111 KCFRAGMKKEAV 122
>gi|344308765|ref|XP_003423047.1| PREDICTED: hypothetical protein LOC100674208 [Loxodonta africana]
Length = 1318
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 56/71 (78%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 691 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 750
Query: 123 KCLQVKMNRDA 133
KCL + M R+
Sbjct: 751 KCLAMGMKREG 761
>gi|195398447|ref|XP_002057833.1| GJ17882 [Drosophila virilis]
gi|194141487|gb|EDW57906.1| GJ17882 [Drosophila virilis]
Length = 679
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 141 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 200
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 201 KCFKAGMKKEAV 212
>gi|24582907|ref|NP_476887.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|442626918|ref|NP_723414.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
gi|22945982|gb|AAF52702.2| hepatocyte nuclear factor 4, isoform A [Drosophila melanogaster]
gi|28317035|gb|AAO39537.1| RE09535p [Drosophila melanogaster]
gi|220942524|gb|ACL83805.1| Hnf4-PA [synthetic construct]
gi|220952740|gb|ACL88913.1| Hnf4-PA [synthetic construct]
gi|440213579|gb|AAF52703.2| hepatocyte nuclear factor 4, isoform E [Drosophila melanogaster]
Length = 704
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 141 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 200
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 201 KCFKAGMKKEAV 212
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+CKVCGD+ASGKHYG+ SC+GC+GFFKR++R+ L Y C++ HC++D +RN+CQ CR+
Sbjct: 101 VCKVCGDRASGKHYGLYSCEGCKGFFKRTVRKELSYSCRDNKHCVIDKRQRNRCQFCRYQ 160
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 161 KCLTMGMKREAV 172
>gi|313228671|emb|CBY07463.1| unnamed protein product [Oikopleura dioica]
Length = 578
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/71 (57%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGD++SG HYG+ +C+GC+GFF+RS + N Y C G C+VD T RN+CQACR K
Sbjct: 42 CKVCGDRSSGIHYGIITCEGCKGFFRRSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKK 101
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 102 CLGLGMSRDAV 112
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQAC 119
DVLCKVC D +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQAC
Sbjct: 39 DVLCKVCSDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGRCPVDKAHRNQCQAC 98
Query: 120 RFSKCLQVKMNRDAM 134
R KCLQ MN+DA+
Sbjct: 99 RLKKCLQSGMNKDAV 113
>gi|309320759|gb|ADO64596.1| ultraspiracle [Spodoptera littoralis]
Length = 467
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 113 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 172
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 173 KCLPCGMKREAV 184
>gi|161769557|gb|ABX79144.1| ultraspiracle [Spodoptera litura]
gi|388325217|gb|AFK27932.1| Ecdysone receptor [Spodoptera litura]
Length = 467
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 113 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 172
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 173 KCLACGMKREAV 184
>gi|348539244|ref|XP_003457099.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oreochromis
niloticus]
Length = 454
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RNQC+ CR
Sbjct: 50 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLK 109
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 110 KCFRAGMKKEAV 121
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 39 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 97
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 98 NQCQACRLKKCLQAGMNQDAV 118
>gi|194760751|ref|XP_001962596.1| GF14359 [Drosophila ananassae]
gi|190616293|gb|EDV31817.1| GF14359 [Drosophila ananassae]
Length = 735
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 171 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFSRNCVVDKDKRNQCRYCRLR 230
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 231 KCFKAGMKKEAV 242
>gi|187940918|gb|ACD39740.1| ultraspiracle protein [Spodoptera exigua]
Length = 412
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 120 KCLACGMKREAV 131
>gi|444726663|gb|ELW67187.1| Usher syndrome type-1C protein-binding protein 1 [Tupaia chinensis]
Length = 767
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ CR
Sbjct: 644 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYCRL 703
Query: 122 SKCLQVKMNRD 132
KC +V M ++
Sbjct: 704 KKCFRVGMRKE 714
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 70 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 129
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 130 QCQYCRLKKCLKVGMRREAV 149
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 214 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 273
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 274 QCQYCRLKKCLKVGMRREAV 293
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ CR
Sbjct: 51 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLNYTCRSNRECQIDQHHRNQCQYCRL 110
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 111 KKCFRVGMRKEAV 123
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 72 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 131
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 132 QCQYCRLKKCLKVGMRREAV 151
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ CR
Sbjct: 52 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNRECQIDQHHRNQCQYCRL 111
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 112 KKCFRVGMRKEAV 124
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 48 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 107
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 108 KCLQAGMNQDAV 119
>gi|1575768|gb|AAB09592.1| hepatocyte nuclear factor 4 homolog [Drosophila melanogaster]
Length = 666
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 103 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 162
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 163 KCFKAGMKKEAV 174
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 39 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 98
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 99 KCLQAGMNQDAV 110
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 6 LPLAETIDHGR-KNTQINFFI-LPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVL 63
+P +I +G + QIN + L G+ + V +S + M S P G S L
Sbjct: 79 IPGTPSIGYGPVSSPQINSTVNLSGLHS-VSSSEDVKPPLGMRSM-PSHPNGGAVSGKRL 136
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+CQ CR+ K
Sbjct: 137 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQK 196
Query: 124 CLQVKMNRDAM 134
CL M R+A+
Sbjct: 197 CLATGMKREAV 207
>gi|12644293|sp|P49866.2|HNF4_DROME RecName: Full=Transcription factor HNF-4 homolog; Short=dHNF4;
AltName: Full=Nuclear receptor subfamily 2 group A
member 4
Length = 666
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 103 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 162
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 163 KCFKAGMKKEAV 174
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 74 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 132
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 133 NQCQACRLKKCLQAGMNQDAV 153
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 330 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 389
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 390 KCLQAGMNQDAV 401
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 39 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 98
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 99 KCLQAGMNQDAV 110
>gi|417347494|gb|AFX60117.1| nuclear receptor USP isoform 2 [Spodoptera frugiperda]
Length = 414
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 120 KCLACGMKREAV 131
>gi|24582909|ref|NP_723413.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
gi|22945983|gb|AAN10680.1| hepatocyte nuclear factor 4, isoform B [Drosophila melanogaster]
Length = 732
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 169 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 228
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 229 KCFKAGMKKEAV 240
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 6 LPLAETIDHGR-KNTQINFFI-LPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVL 63
+P +I +G + QIN + L G+ + V +S + M S P G S L
Sbjct: 79 IPGTPSIGYGPVSSPQINSTVNLSGLHS-VSSSEDVKPPLGMRSM-PSHPNGGAVSGKRL 136
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+CQ CR+ K
Sbjct: 137 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQK 196
Query: 124 CLQVKMNRDAM 134
CL M R+A+
Sbjct: 197 CLATGMKREAV 207
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C+ C +D RNQCQ CR
Sbjct: 51 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRECQIDQHHRNQCQYCRL 110
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 111 KKCFRVGMRKEAV 123
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 238 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 297
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 298 KCFKAGMKKEAV 309
>gi|449494303|ref|XP_002198038.2| PREDICTED: hepatocyte nuclear factor 4-gamma [Taeniopygia guttata]
Length = 454
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 3/79 (3%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G++S LC +CGD+A+GKHYG SCDGC+GFF+RSIR+N Y C+ CIVD +RNQ
Sbjct: 54 GVSS---LCAICGDRATGKHYGASSCDGCKGFFRRSIRKNHVYSCRFNRQCIVDKDKRNQ 110
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ CR KC + M ++A+
Sbjct: 111 CRYCRLKKCFRAGMKKEAV 129
>gi|35902797|ref|NP_919349.1| hepatocyte nuclear factor 4-alpha [Danio rerio]
gi|26006393|gb|AAN77281.1|AF473824_1 hepatocyte nuclear factor 4 alpha [Danio rerio]
Length = 454
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RNQC+ CR
Sbjct: 50 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLK 109
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 110 KCFRAGMKKEAV 121
>gi|34194038|gb|AAH56550.1| Hnf4a protein [Danio rerio]
Length = 463
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RNQC+ CR
Sbjct: 59 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLK 118
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 119 KCFRAGMKKEAV 130
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 33 LLCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGMCPVDKAHRNQCQACR 92
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 93 LKKCLQAGMNKDAV 106
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKR+IRRNL Y C+ C +D RNQCQ C
Sbjct: 52 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRTIRRNLSYTCRSNRDCQIDQHHRNQCQYC 111
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 112 RLKKCFRVGMRKEAV 126
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 6 LPLAETIDHGR-KNTQINFFI-LPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVL 63
+P +I +G + QIN + L G+ + V +S + M S P G S L
Sbjct: 72 IPGTPSIGYGPVSSPQINSTVNLSGLHS-VSSSEDVKPPLGMRSM-PSHPNGGAVSGKRL 129
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+CQ CR+ K
Sbjct: 130 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQK 189
Query: 124 CLQVKMNRDAM 134
CL M R+A+
Sbjct: 190 CLATGMKREAV 200
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C ++ RN+CQ CR +
Sbjct: 120 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLMYTCRGSGECAINKLHRNRCQYCRLQR 179
Query: 124 CLQVKMNRDAM 134
C+ + M +D++
Sbjct: 180 CIALGMKQDSV 190
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 66 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRN 125
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 126 QCQYCRLKKCLKVGMRREAV 145
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 6 LPLAETIDHGR-KNTQINFFI-LPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVL 63
+P +I +G + QIN + L G+ + V +S + M S P G S L
Sbjct: 66 IPGTPSIGYGPVSSPQINSTVNLSGLHS-VSSSEDVKPPLGMRSM-PSHPNGGAVSGKRL 123
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+CQ CR+ K
Sbjct: 124 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQK 183
Query: 124 CLQVKMNRDAM 134
CL M R+A+
Sbjct: 184 CLATGMKREAV 194
>gi|118344390|ref|NP_001072021.1| nuclear receptor [Ciona intestinalis]
gi|70571079|dbj|BAE06675.1| nuclear receptor [Ciona intestinalis]
Length = 802
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + N Y C G+CI+D + RN+CQ CR K
Sbjct: 165 CKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQK 224
Query: 124 CLQVKMNRDAM 134
CL+ M++DA+
Sbjct: 225 CLRAGMSKDAV 235
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 67 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRANRNCPIDQHHRN 126
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 127 QCQYCRLKKCLKVGMRREAV 146
>gi|1718061|sp|P54779.1|USP_MANSE RecName: Full=Protein ultraspiracle homolog; AltName: Full=Nuclear
receptor subfamily 2 group B member 4
gi|1304738|gb|AAB64234.1| MsUSP-1 protein [Manduca sexta]
Length = 461
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 112 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQ 171
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 172 KCLACGMKREAV 183
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 8 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 67
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 68 KCLGMGMKREAV 79
>gi|2895868|gb|AAC03056.1| ultraspiracle [Chironomus tentans]
Length = 552
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 196 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERNCVIDKKQRNRCQYCRYQ 255
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 256 KCLNCGMKREAV 267
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 8 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCIIDKRQRNRCQYCRYQ 67
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 68 KCLGMGMKREAV 79
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 109 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 168
Query: 123 KCLQVKMNRDAM 134
KCL + M R A+
Sbjct: 169 KCLAMGMKRGAV 180
>gi|112984304|ref|NP_001037470.1| protein ultraspiracle homolog [Bombyx mori]
gi|1345734|sp|P49700.1|USP_BOMMO RecName: Full=Protein ultraspiracle homolog; AltName: Full=BmCF1;
AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=RXR type hormone receptor CF1
gi|456395|gb|AAC13750.1| RXR type hormone receptor [Bombyx mori]
Length = 462
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 113 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDKNCIIDKRQRNRCQYCRYQ 172
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 173 KCLACGMKREAV 184
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 77 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 136
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 137 QCQYCRLKKCLKVGMRREAV 156
>gi|410928927|ref|XP_003977851.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like isoform 1
[Takifugu rubripes]
Length = 454
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ CIVD +RNQC+ CR
Sbjct: 50 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCIVDKDKRNQCRYCRLK 109
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 110 KCFRAGMKKEAV 121
>gi|241669014|gb|ACS68165.1| FI04795p [Drosophila melanogaster]
Length = 738
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 175 VCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 234
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 235 KCFKAGMKKEAV 246
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G S LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+
Sbjct: 120 GAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNR 179
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR+ KCL M R+A+
Sbjct: 180 CQYCRYQKCLATGMKREAV 198
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C ++ RN+CQ CR +
Sbjct: 120 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECAINKLHRNRCQYCRLQR 179
Query: 124 CLQVKMNRDAM 134
C+ + M +D++
Sbjct: 180 CIALGMKQDSV 190
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G S LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+
Sbjct: 120 GTVSGKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNR 179
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR+ KCL M R+A+
Sbjct: 180 CQYCRYQKCLATGMKREAV 198
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 60/86 (69%)
Query: 49 FPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIV 108
P G S LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIV
Sbjct: 76 MPSHPNGGAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIV 135
Query: 109 DVTRRNQCQACRFSKCLQVKMNRDAM 134
D +RN+CQ CR+ KCL M R+A+
Sbjct: 136 DKRQRNRCQYCRYQKCLATGMKREAV 161
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 27 PGVST---MVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
P +ST + +S + L S + + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 37 PSISTSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKH---LCSICGDRASGKHYGVYSCEG 93
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E C +D +RN+CQ CR+ KCL + M R+A+
Sbjct: 94 CKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLSMGMKREAV 144
>gi|353232893|emb|CCD80248.1| putative hepatocyte nuclear factor 4-alpha (hnf-4-alpha)
[Schistosoma mansoni]
Length = 1061
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+LC +C DKA+GKHYG SCDGC+GFF+RS+RR Y C+ + +CIV +RNQC+ CRF
Sbjct: 278 MLCLICEDKATGKHYGAYSCDGCKGFFRRSVRRKHSYTCRHKKNCIVTKDKRNQCRFCRF 337
Query: 122 SKCLQVKMNRDAM 134
KC +V M A+
Sbjct: 338 RKCFRVGMKESAV 350
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D+ CKVC D +SGKHYG+ +CDGC GFFKRSIRRN +Y+CK + G C VD T RNQC+A
Sbjct: 23 DIPCKVCKDFSSGKHYGIYACDGCAGFFKRSIRRNRQYICKSKSEGACPVDKTHRNQCRA 82
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC+ MN+DA+
Sbjct: 83 CRLRKCMLSGMNKDAV 98
>gi|256088710|ref|XP_002580469.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Schistosoma
mansoni]
Length = 805
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+LC +C DKA+GKHYG SCDGC+GFF+RS+RR Y C+ + +CIV +RNQC+ CRF
Sbjct: 184 MLCLICEDKATGKHYGAYSCDGCKGFFRRSVRRKHSYTCRHKKNCIVTKDKRNQCRFCRF 243
Query: 122 SKCLQVKMNRDAM 134
KC +V M A+
Sbjct: 244 RKCFRVGMKESAV 256
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 81 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 141 KCLSCGMKREAV 152
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 27 PGVST---MVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDG 83
P +ST + +S + L S + + P +G LC +CGD+ASGKHYGV SC+G
Sbjct: 37 PSISTSPFTIGSSNTSGLSTSPTQYPPSHPLSGSKH---LCSICGDRASGKHYGVYSCEG 93
Query: 84 CRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
C+GFFKR++R++L Y C+E C +D +RN+CQ CR+ KCL + M R+A+
Sbjct: 94 CKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQKCLSMGMKREAV 144
>gi|407186432|gb|AFT63499.1| ultraspiracle [Bradysia coprophila]
Length = 447
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 44 SMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER 103
+MS++ P +G LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E
Sbjct: 92 NMSAYPPNHPLSGSKH---LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREE 148
Query: 104 GHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
CI+D +RN+CQ CR+ KCL M R+A+
Sbjct: 149 KACIIDKRQRNRCQYCRYQKCLVCGMKREAV 179
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G S LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+
Sbjct: 120 GTVSGKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNR 179
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR+ KCL M R+A+
Sbjct: 180 CQYCRYQKCLATGMKREAV 198
>gi|358335063|dbj|GAA34732.2| nuclear receptor subfamily 2 group F member 1-B [Clonorchis
sinensis]
Length = 748
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+D +VCGD++SGKHYG +C+GC+ FFKRS+R++ YVC+ G C VD RRNQCQAC
Sbjct: 216 VDQQARVCGDRSSGKHYGQFTCEGCKSFFKRSVRKSASYVCRSEGQCPVDAQRRNQCQAC 275
Query: 120 RFSKCLQVKMNRDAM 134
R ++CL M ++ +
Sbjct: 276 RMTRCLLAGMKKEGL 290
>gi|357602940|gb|EHJ63582.1| hypothetical protein KGM_12726 [Danaus plexippus]
Length = 142
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 58/83 (69%), Gaps = 4/83 (4%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDV 110
TG +D+ C VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD
Sbjct: 54 TGDRLLDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDK 113
Query: 111 TRRNQCQACRFSKCLQVKMNRDA 133
T RNQC+ACR +KC Q MN+D
Sbjct: 114 THRNQCRACRLAKCFQANMNKDG 136
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 55 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 114
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 115 KCLQAGMNQDAV 126
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 55 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 114
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 115 KCLQAGMNQDAV 126
>gi|449282512|gb|EMC89345.1| Hepatocyte nuclear factor 4-beta [Columba livia]
Length = 459
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+GI+S LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C++D +RN
Sbjct: 55 SGISS---LCSICGDRATGKHYGASSCDGCKGFFRRSVRKNHIYSCRFSRQCVIDKDKRN 111
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ CR KC + M ++A+
Sbjct: 112 QCRYCRLKKCFRAGMKKEAV 131
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 102 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 161
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 162 QCQYCRLKKCLKVGMRREAV 181
>gi|326931833|ref|XP_003212028.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Meleagris
gallopavo]
Length = 455
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ C
Sbjct: 47 VSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYC 106
Query: 120 RFSKCLQVKMNRDAM 134
R KC + M ++A+
Sbjct: 107 RLKKCFRAGMKKEAV 121
>gi|71894981|ref|NP_001026026.1| hepatocyte nuclear factor 4-alpha [Gallus gallus]
gi|57116106|gb|AAW33562.1| hepatic nuclear factor 4alpha [Gallus gallus]
Length = 454
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ C
Sbjct: 47 VSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYC 106
Query: 120 RFSKCLQVKMNRDAM 134
R KC + M ++A+
Sbjct: 107 RLKKCFRAGMKKEAV 121
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ CR
Sbjct: 51 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYSCRSNRDCQIDQHHRNQCQYCRL 110
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 111 KKCFRVGMRKEAV 123
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C+ C +D RNQCQ CR
Sbjct: 51 VDCVVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRSNRECQIDQHHRNQCQYCRL 110
Query: 122 SKCLQVKMNRDAM 134
KC +V M ++A+
Sbjct: 111 KKCFRVGMRKEAV 123
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 59/79 (74%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G S LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+
Sbjct: 83 GAVSGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNR 142
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR+ KCL M R+A+
Sbjct: 143 CQYCRYQKCLATGMKREAV 161
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 59/73 (80%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+C VCGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +CIVD +RN+CQ CR+
Sbjct: 210 TVCAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLHYACRDEKNCIVDKRQRNRCQYCRY 269
Query: 122 SKCLQVKMNRDAM 134
KC+ + M R+A+
Sbjct: 270 QKCIAMGMRREAV 282
>gi|21464740|gb|AAM54495.1|AF411255_1 ultraspiracle protein [Spodoptera frugiperda]
Length = 276
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 120 KCLACGMKREAV 131
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 32 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQVGAGMCPVDKAHRNQCQACRLK 91
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 92 KCLQEGMNQDAV 103
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 59/73 (80%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+C VCGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +CIVD +RN+CQ CR+
Sbjct: 176 TVCAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLHYACRDEKNCIVDKRQRNRCQYCRY 235
Query: 122 SKCLQVKMNRDAM 134
KC+ + M R+A+
Sbjct: 236 QKCIAMGMRREAV 248
>gi|118344432|ref|NP_001072038.1| nuclear receptor [Ciona intestinalis]
gi|70571084|dbj|BAE06676.1| nuclear receptor [Ciona intestinalis]
Length = 651
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + N Y C G+CI+D + RN+CQ CR K
Sbjct: 14 CKVCGDKSSGIHYGVITCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQK 73
Query: 124 CLQVKMNRDAM 134
CL+ M++DA+
Sbjct: 74 CLRAGMSKDAV 84
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 96 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 155
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 156 ACRLKKCLQMGMNKDAV 172
>gi|189031270|gb|ACD74808.1| ultraspiracle isoform 1 [Helicoverpa armigera]
Length = 414
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 60 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 119
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 120 KCLACGMKREAV 131
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 39 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 98
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 99 KCLQEGMNQDAV 110
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 75 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 134
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 135 ACRLKKCLQMGMNKDAV 151
>gi|426233871|ref|XP_004010932.1| PREDICTED: photoreceptor-specific nuclear receptor [Ovis aries]
Length = 516
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 144 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 203
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 204 KCLQAGMNQDAV 215
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 54/74 (72%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+V C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ C +D RNQCQ CR
Sbjct: 51 NVDCMVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRGNRDCPIDQHHRNQCQYCR 110
Query: 121 FSKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 111 LKKCLKVGMRREAV 124
>gi|449486195|ref|XP_002190881.2| PREDICTED: hepatocyte nuclear factor 4-alpha [Taeniopygia guttata]
Length = 431
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ C
Sbjct: 23 VSTLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFNRQCVVDKDKRNQCRYC 82
Query: 120 RFSKCLQVKMNRDAM 134
R KC + M ++A+
Sbjct: 83 RLKKCFRAGMKKEAV 97
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ +V C VCGDK+SGKHYG +C+GC+ FFKRS+RR L Y C+ C +DV RNQCQ
Sbjct: 253 SGQNVECVVCGDKSSGKHYGQHTCEGCKSFFKRSVRRKLTYTCRGTRQCPIDVHHRNQCQ 312
Query: 118 ACRFSKCLQVKMNRDAM 134
CRF KC++ M ++A+
Sbjct: 313 YCRFQKCVRAGMRKEAV 329
>gi|313237532|emb|CBY12680.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
++V C+VCGD +SGKHYGV +CDGC GFFKRSIR+ YVCK +G C +D RNQC+
Sbjct: 6 LEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCKGIIQGQCPIDKAHRNQCR 65
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR CL+V+MNRDA+
Sbjct: 66 ACRLEHCLKVRMNRDAV 82
>gi|313246784|emb|CBY35651.1| unnamed protein product [Oikopleura dioica]
Length = 160
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%), Gaps = 2/77 (2%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE--RGHCIVDVTRRNQCQ 117
++V C+VCGD +SGKHYGV +CDGC GFFKRSIR+ YVCK +G C +D RNQC+
Sbjct: 11 LEVPCRVCGDNSSGKHYGVYACDGCSGFFKRSIRKGRSYVCKGIIQGQCPIDKAHRNQCR 70
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR CL+V+MNRDA+
Sbjct: 71 ACRLEHCLKVRMNRDAV 87
>gi|372293389|gb|AEX92628.1| ultraspiracle, partial [Daphnia magna]
gi|372293391|gb|AEX92629.1| ultraspiracle, partial [Daphnia magna]
gi|372293393|gb|AEX92630.1| ultraspiracle, partial [Daphnia magna]
gi|372293395|gb|AEX92631.1| ultraspiracle, partial [Daphnia magna]
gi|372293397|gb|AEX92632.1| ultraspiracle, partial [Daphnia magna]
gi|372293399|gb|AEX92633.1| ultraspiracle, partial [Daphnia magna]
gi|372293401|gb|AEX92634.1| ultraspiracle, partial [Daphnia magna]
gi|372293403|gb|AEX92635.1| ultraspiracle, partial [Daphnia magna]
gi|372293405|gb|AEX92636.1| ultraspiracle, partial [Daphnia magna]
gi|372293407|gb|AEX92637.1| ultraspiracle, partial [Daphnia magna]
gi|372293409|gb|AEX92638.1| ultraspiracle, partial [Daphnia magna]
gi|372293411|gb|AEX92639.1| ultraspiracle, partial [Daphnia magna]
gi|372293413|gb|AEX92640.1| ultraspiracle, partial [Daphnia magna]
gi|372293415|gb|AEX92641.1| ultraspiracle, partial [Daphnia magna]
gi|372293417|gb|AEX92642.1| ultraspiracle, partial [Daphnia magna]
gi|372293419|gb|AEX92643.1| ultraspiracle, partial [Daphnia magna]
gi|372293421|gb|AEX92644.1| ultraspiracle, partial [Daphnia magna]
gi|372293423|gb|AEX92645.1| ultraspiracle, partial [Daphnia magna]
gi|372293425|gb|AEX92646.1| ultraspiracle, partial [Daphnia magna]
gi|372293427|gb|AEX92647.1| ultraspiracle, partial [Daphnia magna]
gi|372293429|gb|AEX92648.1| ultraspiracle, partial [Daphnia magna]
gi|372293431|gb|AEX92649.1| ultraspiracle, partial [Daphnia magna]
gi|372293433|gb|AEX92650.1| ultraspiracle, partial [Daphnia magna]
gi|372293435|gb|AEX92651.1| ultraspiracle, partial [Daphnia magna]
gi|372293437|gb|AEX92652.1| ultraspiracle, partial [Daphnia magna]
gi|372293439|gb|AEX92653.1| ultraspiracle, partial [Daphnia magna]
gi|372293441|gb|AEX92654.1| ultraspiracle, partial [Daphnia magna]
gi|372293443|gb|AEX92655.1| ultraspiracle, partial [Daphnia magna]
gi|372293445|gb|AEX92656.1| ultraspiracle, partial [Daphnia magna]
gi|372293447|gb|AEX92657.1| ultraspiracle, partial [Daphnia magna]
gi|372293449|gb|AEX92658.1| ultraspiracle, partial [Daphnia magna]
gi|372293451|gb|AEX92659.1| ultraspiracle, partial [Daphnia magna]
gi|372293453|gb|AEX92660.1| ultraspiracle, partial [Daphnia magna]
gi|372293455|gb|AEX92661.1| ultraspiracle, partial [Daphnia magna]
gi|372293457|gb|AEX92662.1| ultraspiracle, partial [Daphnia magna]
gi|372293459|gb|AEX92663.1| ultraspiracle, partial [Daphnia magna]
gi|372293461|gb|AEX92664.1| ultraspiracle, partial [Daphnia magna]
gi|372293463|gb|AEX92665.1| ultraspiracle, partial [Daphnia magna]
gi|372293465|gb|AEX92666.1| ultraspiracle, partial [Daphnia magna]
gi|372293467|gb|AEX92667.1| ultraspiracle, partial [Daphnia magna]
gi|372293469|gb|AEX92668.1| ultraspiracle, partial [Daphnia magna]
gi|372293471|gb|AEX92669.1| ultraspiracle, partial [Daphnia magna]
gi|372293473|gb|AEX92670.1| ultraspiracle, partial [Daphnia magna]
gi|372293475|gb|AEX92671.1| ultraspiracle, partial [Daphnia magna]
gi|372293477|gb|AEX92672.1| ultraspiracle, partial [Daphnia magna]
gi|372293479|gb|AEX92673.1| ultraspiracle, partial [Daphnia magna]
gi|372293481|gb|AEX92674.1| ultraspiracle, partial [Daphnia magna]
gi|372293483|gb|AEX92675.1| ultraspiracle, partial [Daphnia magna]
gi|372293485|gb|AEX92676.1| ultraspiracle, partial [Daphnia magna]
gi|372293487|gb|AEX92677.1| ultraspiracle, partial [Daphnia magna]
gi|372293489|gb|AEX92678.1| ultraspiracle, partial [Daphnia magna]
gi|372293491|gb|AEX92679.1| ultraspiracle, partial [Daphnia magna]
gi|372293493|gb|AEX92680.1| ultraspiracle, partial [Daphnia magna]
gi|372293495|gb|AEX92681.1| ultraspiracle, partial [Daphnia magna]
gi|372293497|gb|AEX92682.1| ultraspiracle, partial [Daphnia magna]
gi|372293499|gb|AEX92683.1| ultraspiracle, partial [Daphnia magna]
gi|372293501|gb|AEX92684.1| ultraspiracle, partial [Daphnia magna]
gi|372293503|gb|AEX92685.1| ultraspiracle, partial [Daphnia magna]
gi|372293505|gb|AEX92686.1| ultraspiracle, partial [Daphnia magna]
gi|372293507|gb|AEX92687.1| ultraspiracle, partial [Daphnia magna]
gi|372293509|gb|AEX92688.1| ultraspiracle, partial [Daphnia magna]
gi|372293511|gb|AEX92689.1| ultraspiracle, partial [Daphnia magna]
gi|372293513|gb|AEX92690.1| ultraspiracle, partial [Daphnia magna]
gi|372293515|gb|AEX92691.1| ultraspiracle, partial [Daphnia magna]
gi|372293517|gb|AEX92692.1| ultraspiracle, partial [Daphnia magna]
gi|372293519|gb|AEX92693.1| ultraspiracle, partial [Daphnia magna]
Length = 162
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C++D +RN+CQ CR+
Sbjct: 1 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRCQYCRYQ 60
Query: 123 KCLQVKMNRDAM 134
KCLQ+ M R+A+
Sbjct: 61 KCLQMGMKREAV 72
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNLEY C+ C VD RNQCQ CR
Sbjct: 7 VDCAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRNLEYQCRSNKKCPVDQHHRNQCQHCRL 66
Query: 122 SKCLQVKMNRDAM 134
KC +V M R+A+
Sbjct: 67 KKCFKVGMRREAV 79
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C ++ RN+CQ CR +
Sbjct: 114 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECAINKLHRNRCQYCRLQR 173
Query: 124 CLQVKMNRDAM 134
C+ + M +D++
Sbjct: 174 CIALGMKQDSV 184
>gi|354720734|gb|AER38412.1| ultraspiracle [Sesamia nonagrioides]
Length = 267
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 44 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERNCIIDKRQRNRCQYCRYQ 103
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 104 KCLACGMKREAV 115
>gi|350646662|emb|CCD58689.1| nuclear hormone receptor nor-1/nor-2, putative [Schistosoma mansoni]
Length = 1550
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD A+ +HYGV +C+GC+GFFKR+I++N +YVC + +C+VD RRN+CQ CRF
Sbjct: 970 LCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQ 1029
Query: 123 KCLQVKMNRDAM 134
KCL+V M ++ +
Sbjct: 1030 KCLKVGMVKEVV 1041
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ HC++D +RN+CQ CR+
Sbjct: 3 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKHCVIDKRQRNRCQYCRYQ 62
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 63 KCLAMGMKREAV 74
>gi|157129052|ref|XP_001655253.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
gi|108872374|gb|EAT36599.1| AAEL011323-PA, partial [Aedes aegypti]
Length = 531
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+S + LC +C D+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+
Sbjct: 37 SSANNLCTICSDRATGKHYGAASCDGCKGFFRRSVRKNHSYTCRFSRQCVVDKDKRNQCR 96
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KC + M ++A+
Sbjct: 97 YCRLRKCFKAGMKKEAV 113
>gi|157129050|ref|XP_001655252.1| hepatocyte nuclear factor 4-alpha (hnf-4-alpha) [Aedes aegypti]
Length = 532
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+S + LC +C D+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+
Sbjct: 37 SSANNLCTICSDRATGKHYGAASCDGCKGFFRRSVRKNHSYTCRFSRQCVVDKDKRNQCR 96
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KC + M ++A+
Sbjct: 97 YCRLRKCFKAGMKKEAV 113
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 142 CLKVGMRREAI 152
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 106 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 165
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 166 ACRLKKCLQMGMNKDAV 182
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/78 (52%), Positives = 57/78 (73%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ + ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQC
Sbjct: 168 LKNQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGNRNCPIDQHHRNQC 227
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR KCL++ M R+A+
Sbjct: 228 QFCRLRKCLKMGMRREAV 245
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 142 CLKVGMRREAV 152
>gi|443715570|gb|ELU07483.1| hypothetical protein CAPTEDRAFT_224811 [Capitella teleta]
Length = 360
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK----ERGHCIVDVTRRNQ 115
+D+ CKVCGD++SGKHYG+ SCDGC GFFKRSI +N Y CK ++G C +D T RNQ
Sbjct: 15 LDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHKNRVYTCKASGEKKGRCPMDKTHRNQ 74
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR ++C MN+DA+
Sbjct: 75 CRACRLTQCFSADMNKDAV 93
>gi|3098334|gb|AAC15588.1| retinoid X receptor [Amblyomma americanum]
Length = 400
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREERTCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 139 KCLACGMKREAV 150
>gi|383864113|ref|XP_003707524.1| PREDICTED: transcription factor HNF-4 homolog [Megachile rotundata]
Length = 539
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ +C+VD +RNQC+ CR K
Sbjct: 121 CAICGDRATGKHYGAASCDGCKGFFRRSVRKNHLYTCRFSRNCVVDKDKRNQCRYCRLRK 180
Query: 124 CLQVKMNRDAM 134
C + M ++A+
Sbjct: 181 CFKAGMKKEAV 191
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 147 CLKVGMRREAV 157
>gi|194912875|ref|XP_001982583.1| GG12659 [Drosophila erecta]
gi|190648259|gb|EDV45552.1| GG12659 [Drosophila erecta]
Length = 507
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 102 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 161
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 162 KCLTCGMKREAV 173
>gi|409178669|gb|AFV25500.1| ultraspiracle, partial [Drosophila caribiana]
Length = 418
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 139 KCLSCGMKREAV 150
>gi|71040958|gb|AAZ20370.1| RXRc nuclear hormone receptor [Gecarcinus lateralis]
Length = 363
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 71 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 130
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 131 KCLTMGMKREAV 142
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 194 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 253
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 254 YCRLKKCLKMGMRREAV 270
>gi|449491752|ref|XP_002191570.2| PREDICTED: nuclear receptor ROR-beta-like [Taeniopygia guttata]
Length = 461
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 106 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQK 165
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 166 CLALGMSRDAV 176
>gi|195477854|ref|XP_002100326.1| GE16988 [Drosophila yakuba]
gi|194187850|gb|EDX01434.1| GE16988 [Drosophila yakuba]
Length = 509
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 163 KCLTCGMKREAV 174
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 4 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYCRYQ 63
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 64 KCLSMGMKREAL 75
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 52/74 (70%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 54 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 113
Query: 120 RFSKCLQVKMNRDA 133
R KC +V M ++
Sbjct: 114 RLKKCFRVGMRKEG 127
>gi|8096|emb|CAA36827.1| unnamed protein product [Drosophila melanogaster]
Length = 507
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 163 KCLTCGMKREAV 174
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 113 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 172
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 173 CLEMGMKMESV 183
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/78 (53%), Positives = 55/78 (70%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 67 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 126
Query: 115 QCQACRFSKCLQVKMNRD 132
QCQ CR KCL+V M R+
Sbjct: 127 QCQYCRLKKCLKVGMRRE 144
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 142 CLKVGMRREAV 152
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|409178667|gb|AFV25499.1| ultraspiracle, partial [Zaprionus tuberculatus]
Length = 461
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 72 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 131
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 132 KCLSCGMKREAV 143
>gi|409178679|gb|AFV25505.1| ultraspiracle, partial [Drosophila santomea]
Length = 474
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 78 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 137
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 138 KCLTCGMKREAV 149
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 81 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 140
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 141 CLKVGMRREAV 151
>gi|195379020|ref|XP_002048279.1| GJ13880 [Drosophila virilis]
gi|194155437|gb|EDW70621.1| GJ13880 [Drosophila virilis]
Length = 490
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/71 (61%), Positives = 53/71 (74%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 418 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 477
Query: 122 SKCLQVKMNRD 132
KCL M+RD
Sbjct: 478 KKCLSAGMSRD 488
>gi|17136580|ref|NP_476781.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|442614874|ref|NP_001259168.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|137178|sp|P20153.1|USP_DROME RecName: Full=Protein ultraspiracle; AltName: Full=Chorion factor
1; AltName: Full=Nuclear receptor subfamily 2 group B
member 4; AltName: Full=XR2C
gi|103505|pir||S11513 usp protein - fruit fly (Drosophila sp.)
gi|8833|emb|CAA37496.1| unnamed protein product [Drosophila melanogaster]
gi|3676116|emb|CAA21122.1| EG:22E5.1 [Drosophila melanogaster]
gi|7290245|gb|AAF45707.1| ultraspiracle, isoform A [Drosophila melanogaster]
gi|17862122|gb|AAL39538.1| LD09973p [Drosophila melanogaster]
gi|220943484|gb|ACL84285.1| usp-PA [synthetic construct]
gi|220952764|gb|ACL88925.1| usp-PA [synthetic construct]
gi|440216351|gb|AGB95014.1| ultraspiracle, isoform B [Drosophila melanogaster]
gi|227126|prf||1614351A retinoid X receptor
Length = 508
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 103 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 163 KCLTCGMKREAV 174
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KCL + M R+A+
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREAV 142
>gi|409178677|gb|AFV25504.1| ultraspiracle, partial [Drosophila teissieri]
Length = 472
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 76 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 135
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 136 KCLTCGMKREAV 147
>gi|409178675|gb|AFV25503.1| ultraspiracle, partial [Drosophila mauritiana]
Length = 474
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 79 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 139 KCLTCGMKREAV 150
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 91 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 149
Query: 114 NQCQACRFSKCLQVKMNRDA 133
NQCQACR KCLQ MN+D
Sbjct: 150 NQCQACRLKKCLQAGMNQDG 169
>gi|409178673|gb|AFV25502.1| ultraspiracle, partial [Drosophila simulans]
Length = 468
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 132
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 133 KCLTCGMKREAV 144
>gi|194768727|ref|XP_001966463.1| GF21986 [Drosophila ananassae]
gi|190617227|gb|EDV32751.1| GF21986 [Drosophila ananassae]
Length = 512
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 105 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 164
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 165 KCLTCGMKREAV 176
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD T RNQCQ
Sbjct: 61 SPGLTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGLCVVDKTHRNQCQ 120
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 121 ACRLKKCLQMGMNKDAV 137
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 60/80 (75%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G+ +C VCGD+ASGKHYGV SC+GC GFFKR++R++L Y C++ C++D +RN
Sbjct: 183 SGLPMAKHICAVCGDRASGKHYGVYSCEGCEGFFKRTVRKDLSYTCRDSKDCVIDKRQRN 242
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR+ KCL + M R+A+
Sbjct: 243 RCQYCRYQKCLAMGMKREAV 262
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KCL + M R+A+
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREAV 142
>gi|71040962|gb|AAZ20372.1| RXRe nuclear hormone receptor [Gecarcinus lateralis]
Length = 232
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KCL + M R+A+
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREAV 142
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|195347797|ref|XP_002040438.1| GM18927 [Drosophila sechellia]
gi|194121866|gb|EDW43909.1| GM18927 [Drosophila sechellia]
Length = 505
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 100 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 159
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 160 KCLTCGMKREAV 171
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 114 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTIDKRQRNRCQYCRYQ 173
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 174 KCLSMGMKREAV 185
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+ C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ GHC++D RNQCQACR
Sbjct: 22 LTCLVCGDSSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGSGHCVIDKAHRNQCQACR 81
Query: 121 FSKCLQVKMNRDAM 134
KCLQ+ MN+DA+
Sbjct: 82 LKKCLQMGMNKDAV 95
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 61/80 (76%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G+ +C VCGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN
Sbjct: 7 SGLPMAKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKDCVIDKRQRN 66
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR+ KCL + M R+A+
Sbjct: 67 RCQYCRYQKCLAMGMKREAV 86
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 114 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTIDKRQRNRCQYCRYQ 173
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 174 KCLSMGMKREAV 185
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 169 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 228
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 229 CLEMGMKMESV 239
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 132 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 191
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 192 CLEMGMKMESV 202
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 87 LCAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERTCTIDKRQRNRCQYCRYQ 146
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 147 KCLMMGMKREAL 158
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 169 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 228
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 229 CLEMGMKMESV 239
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 169 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 228
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 229 CLEMGMKMESV 239
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 177 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 236
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 237 QCQYCRLKKCLKVGMRREAV 256
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 169 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 228
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 229 CLEMGMKMESV 239
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 93 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 152
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 153 CLEMGMKMESV 163
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 195
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 196 CLEMGMKMESV 206
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 195
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 196 CLEMGMKMESV 206
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 81/132 (61%), Gaps = 7/132 (5%)
Query: 4 GPLPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV- 62
GP P + G + Q+N + P ST ++ L I+ PV + + S
Sbjct: 69 GPSP---GLGFGTNSPQLNSPMNPVSST---EDIKPPLGINGVLKVPVHPSSAMASFTKH 122
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 123 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 182
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 183 KCLAMGMKREAV 194
>gi|195169483|ref|XP_002025551.1| GL15129 [Drosophila persimilis]
gi|194109030|gb|EDW31073.1| GL15129 [Drosophila persimilis]
Length = 359
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 92 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 151
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 152 KCLSCGMKREAV 163
>gi|170586095|ref|XP_001897816.1| nuclear receptor RXR [Brugia malayi]
gi|158594755|gb|EDP33336.1| nuclear receptor RXR, putative [Brugia malayi]
Length = 266
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)
Query: 39 TLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEY 98
TL I SS + GIT+ + C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y
Sbjct: 111 TLYAIQKSS---TSINLGITTKHI-CAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLIY 166
Query: 99 VCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
+C+E +CI+D +RN+CQ CR+ KC + M R+A+
Sbjct: 167 LCRENRNCIIDKRQRNRCQYCRYRKCQSMGMKREAV 202
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 52/74 (70%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 83 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 142
Query: 120 RFSKCLQVKMNRDA 133
R KC +V M ++
Sbjct: 143 RLKKCFRVGMRKEG 156
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 130 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 189
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 190 CLEMGMKMESV 200
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|401559932|gb|AFP95234.1| retinoid X receptor 2 [Schistosoma japonicum]
Length = 1435
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 53/69 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +C D+ASGKHYGV SC+GC+GFFKR++R+ L Y+C++ C +D RN+CQ CR+
Sbjct: 890 MCSICSDRASGKHYGVFSCEGCKGFFKRTVRKELSYICRDNQECQIDKRLRNRCQYCRYQ 949
Query: 123 KCLQVKMNR 131
KCL+V M R
Sbjct: 950 KCLRVGMRR 958
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 114 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERGCTIDKRQRNRCQYCRYQ 173
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 174 KCLSMGMKREAV 185
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C+VD +RN+CQ CR+
Sbjct: 72 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERRCVVDKRQRNRCQYCRYQ 131
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 132 KCLACGMKREAV 143
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 74 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 133
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 134 CLKVGMRREAV 144
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 64/84 (76%), Gaps = 3/84 (3%)
Query: 54 WTGITSMDV---LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDV 110
++ +++M + +C VCGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C++ C++D
Sbjct: 89 FSSVSTMSLAKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKELTYTCRDSKDCVIDK 148
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KCL + M R+A+
Sbjct: 149 RQRNRCQYCRYQKCLAMGMKREAV 172
>gi|344236487|gb|EGV92590.1| Nuclear receptor ROR-alpha [Cricetulus griseus]
Length = 959
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 15 CKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQK 74
Query: 124 CLQVKMNRDAM 134
CL V M+RDA+
Sbjct: 75 CLAVGMSRDAV 85
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 130 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 189
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 190 CLEMGMKMESV 200
>gi|409178681|gb|AFV25506.1| ultraspiracle, partial [Drosophila malerkotliana]
Length = 463
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 82 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 141
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 142 KCLTCGMKREAV 153
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 131 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 190
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 191 CLEMGMKMESV 201
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 93 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 152
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 153 CLEMGMKMESV 163
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 61/94 (64%), Gaps = 9/94 (9%)
Query: 50 PVFVWTGITS---------MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC 100
PV WT ++ + V C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C
Sbjct: 5 PVTTWTRDSTETPEDSEKNVQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTC 64
Query: 101 KERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
+ C +D RNQCQ CR KCL+V M R+A+
Sbjct: 65 RASRDCPIDQHHRNQCQYCRLKKCLKVGMRREAV 98
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 133 KCLSMGMKREAV 144
>gi|395746806|ref|XP_003778513.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pongo abelii]
Length = 493
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 31 TMVKASLRTLLFISMSSF---FPVFVWTG-ITSMDVL-CKVCGDKASGKHYGVPSCDGCR 85
TMV A + LL ++ SF PV+V T ++ ++++ CK+CGDK+SG HYGV +C+GC+
Sbjct: 6 TMVNAFI-ILLDVAKWSFMETLPVYVATNNVSQIEIIPCKICGDKSSGIHYGVITCEGCK 64
Query: 86 GFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
GFF+RS + N Y C + +C++D T RN+CQ CR KCL V M+RDA+
Sbjct: 65 GFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 113
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 79 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 138
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 139 CLKVGMRREAV 149
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 150 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 209
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 210 CLEMGMKMESV 220
>gi|117671683|gb|AAD33428.2|AF129816_1 retinoid X receptor RXR-2 [Schistosoma mansoni]
Length = 1501
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++S +C +C D+ASGKHYGV SC+GC+GFFKR++R+ L Y+C++ C +D RN+C
Sbjct: 908 VSSGQYICSICSDRASGKHYGVFSCEGCKGFFKRTVRKELTYICRDSQECQIDKRLRNRC 967
Query: 117 QACRFSKCLQVKMNR 131
Q CR+ KCL+ M R
Sbjct: 968 QYCRYQKCLRAGMRR 982
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C++CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 111 ICQICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDNRDCVIDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 171 KCLAMGMKREAV 182
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVC D +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 41 LLCKVCSDSSSGKHYGIFTCNGCSGFFKRSVRRRLVYRCQAGNGRCPVDKAHRNQCQACR 100
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 101 LKKCLQAGMNKDAV 114
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 96 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQ 155
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 156 KCLACGMKREAV 167
>gi|432866384|ref|XP_004070824.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Oryzias latipes]
Length = 609
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ + C+++ RN+CQ CR K
Sbjct: 146 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKQDCVINKHHRNRCQFCRLRK 205
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 206 CLKMGMKTESV 216
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 192 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 251
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 252 YCRLKKCLKMGMRREAV 268
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 199 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 258
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 259 YCRLKKCLKMGMRREAV 275
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ M
Sbjct: 143 QYCRYQKCLAMGMKREGM 160
>gi|167650894|gb|AAR30507.2| ecdysone-induced protein E78 [Schistosoma mansoni]
gi|350646273|emb|CCD58999.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 1087
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF K
Sbjct: 289 CKVCGDKASGYHYGVISCEGCKGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRK 348
Query: 124 CLQVKMNRDAM 134
CL M++D++
Sbjct: 349 CLAAGMSKDSV 359
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 195
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 196 CLEMGMKMESV 206
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDA 133
+RN+CQ CR+ KCL + M R+A
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREA 141
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +CI+D +RN+CQ CR+
Sbjct: 125 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCIIDKRQRNRCQYCRYM 184
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 185 KCLNMGMKREAV 196
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 132 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 191
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 192 CLEMGMKMESV 202
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|390357871|ref|XP_003729121.1| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 1
[Strongylocentrotus purpuratus]
Length = 493
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 9/94 (9%)
Query: 50 PVFVWTG---------ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVC 100
P +W G + C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C
Sbjct: 29 PALLWQGKIINGQEPDLNGQPSQCSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTC 88
Query: 101 KERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
+ C+VD +RNQC+ CR KC + M ++A+
Sbjct: 89 RFCRGCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 122
>gi|21464744|gb|AAM54497.1|AF411257_1 ultraspiracle protein [Trichoplusia ni]
Length = 151
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 24 FILPGVSTMVKASLRTLLFISMSSFFPVF----VWTGITSMDVLCKVCGDKASGKHYGVP 79
F+ P +K L S+ P F ++ LC +CGD+ASGKHYGV
Sbjct: 16 FMSPMSPPEIKPDTAMLDIREDSTPPPAFKNYPPNHPLSGSKHLCSICGDRASGKHYGVY 75
Query: 80 SCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+ KCL M R+A+
Sbjct: 76 SCEGCKGFFKRTVRKDLTYACREERSCIIDKRQRNRCQYCRYQKCLACGMKREAV 130
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 189 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 248
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 249 YCRLKKCLKMGMRREAV 265
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ + C+++ RN+CQ CR K
Sbjct: 145 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKQDCVINKHHRNRCQFCRLRK 204
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 205 CLKMGMKTESV 215
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ + C+++ RN+CQ CR K
Sbjct: 146 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSKQDCVINKHHRNRCQFCRLRK 205
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 206 CLKMGMKTESV 216
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 4 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYCRYQ 63
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 64 KCLSMGMKREAV 75
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 151 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 210
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 211 ACRLKKCLQMGMNKDAV 227
>gi|393395464|gb|AFN08662.1| retinoid X receptor 2 [Scylla paramamosain]
Length = 236
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 73 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKRQRNRCQYCRYQ 132
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 133 KCLSMGMKREAV 144
>gi|3608378|gb|AAC72723.1| nuclear transcription factor 4 homolog isoform a [Aedes aegypti]
Length = 565
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+S + LC +C D+A+GKHYG SCDGC+GFF+R++R+N Y C+ C+VD +RNQC+
Sbjct: 70 SSANNLCTICSDRATGKHYGAASCDGCKGFFRRTVRKNHSYTCRFSRQCVVDKDKRNQCR 129
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KC + M ++A+
Sbjct: 130 YCRLRKCFKAGMKKEAV 146
>gi|3608380|gb|AAC72724.1| nuclear transcription factor 4 homolog isoform b [Aedes aegypti]
Length = 538
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+S + LC +C D+A+GKHYG SCDGC+GFF+R++R+N Y C+ C+VD +RNQC+
Sbjct: 43 SSANNLCTICSDRATGKHYGAASCDGCKGFFRRTVRKNHSYTCRFSRQCVVDKDKRNQCR 102
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KC + M ++A+
Sbjct: 103 YCRLRKCFKAGMKKEAV 119
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|345328556|ref|XP_001510073.2| PREDICTED: hepatocyte nuclear factor 4-beta-like [Ornithorhynchus
anatinus]
Length = 462
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 55/75 (73%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
++ LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C++D +RNQC+ C
Sbjct: 55 INSLCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFNRQCVIDKDKRNQCRYC 114
Query: 120 RFSKCLQVKMNRDAM 134
R KC + M ++A+
Sbjct: 115 RLRKCFRAGMKKEAV 129
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 137 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 196
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 197 CLEMGMKMESV 207
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 112 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 171
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 172 CLEMGMKMESV 182
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 52/74 (70%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 22 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 81
Query: 120 RFSKCLQVKMNRDA 133
R KC +V M ++
Sbjct: 82 RLKKCFRVGMRKEG 95
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ M
Sbjct: 143 QYCRYQKCLAMGMKREGM 160
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+CQ CR+
Sbjct: 126 LCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLVDKRQRNRCQYCRYQ 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLAMGMKREAV 197
>gi|930012|emb|CAA37459.1| chorion factor CF1 [Drosophila melanogaster]
Length = 280
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 89 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQ 148
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 149 KCLTCGMKREAV 160
>gi|71040966|gb|AAZ20374.1| RXRg nuclear hormone receptor [Gecarcinus lateralis]
Length = 233
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDA 133
+RN+CQ CR+ KCL + M R+A
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREA 141
>gi|256070329|ref|XP_002571495.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 990
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF K
Sbjct: 289 CKVCGDKASGYHYGVISCEGCKGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRK 348
Query: 124 CLQVKMNRDAM 134
CL M++D++
Sbjct: 349 CLAAGMSKDSV 359
>gi|71040964|gb|AAZ20373.1| RXRf nuclear hormone receptor [Gecarcinus lateralis]
Length = 201
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 52 FVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVT 111
+ T ++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D
Sbjct: 60 YPPTHLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREERSCTIDKR 119
Query: 112 RRNQCQACRFSKCLQVKMNRDAM 134
+RN+CQ CR+ KCL + M R+A+
Sbjct: 120 QRNRCQYCRYQKCLTMGMKREAV 142
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 136 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 195
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 196 CLEMGMKMESV 206
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 143 QYCRYQKCLAMGMKREAV 160
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S ++CKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQ
Sbjct: 42 SPALVCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQ 101
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ MN+DA+
Sbjct: 102 ACRLKKCLQAGMNKDAV 118
>gi|327290672|ref|XP_003230046.1| PREDICTED: retinoic acid receptor RXR-beta-like, partial [Anolis
carolinensis]
Length = 388
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ CIVD +RN+CQ CR+
Sbjct: 116 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQ 175
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 176 KCLATGMKREAV 187
>gi|194277579|gb|AAR28090.2| nuclear hormone receptor 4A protein [Schistosoma mansoni]
Length = 827
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD A+ +HYGV +C+GC+GFFKR+I++N +YVC + +C+VD RRN+CQ CRF
Sbjct: 247 LCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQ 306
Query: 123 KCLQVKMNRDAM 134
KCL+V M ++ +
Sbjct: 307 KCLKVGMVKEVV 318
>gi|224486327|gb|ACN51930.1| ultraspiracle [Daphnia magna]
gi|224486329|gb|ACN51931.1| ultraspiracle [Daphnia magna]
gi|224486331|gb|ACN51932.1| ultraspiracle [Daphnia magna]
gi|224486333|gb|ACN51933.1| ultraspiracle [Daphnia magna]
gi|224486335|gb|ACN51934.1| ultraspiracle [Daphnia magna]
gi|224486337|gb|ACN51935.1| ultraspiracle [Daphnia magna]
gi|224486341|gb|ACN51937.1| ultraspiracle [Daphnia magna]
gi|224486343|gb|ACN51938.1| ultraspiracle [Daphnia magna]
gi|224486345|gb|ACN51939.1| ultraspiracle [Daphnia magna]
Length = 120
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 62/78 (79%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C++D +RN+C
Sbjct: 10 LSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRC 69
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCLQ+ M R+A+
Sbjct: 70 QYCRYQKCLQMGMKREAV 87
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 143 QYCRYQKCLAMGMKREAV 160
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C++D +RN+CQ CR+
Sbjct: 4 FCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDRNCVIDKRQRNRCQYCRYQ 63
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 64 KCLSMGMKREAV 75
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ +V S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S ++CKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQ
Sbjct: 40 SPALVCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQ 99
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ MN+DA+
Sbjct: 100 ACRLKKCLQAGMNKDAV 116
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 190 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 249
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 250 YCRLKKCLKMGMRREAV 266
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 190 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 249
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 250 YCRLKKCLKMGMRREAV 266
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 190 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 249
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 250 YCRLKKCLKMGMRREAV 266
>gi|256084609|ref|XP_002578520.1| retinoid-x-receptor (RXR) [Schistosoma mansoni]
gi|360045420|emb|CCD82968.1| retinoid-x-receptor (RXR) [Schistosoma mansoni]
Length = 1258
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++S +C +C D+ASGKHYGV SC+GC+GFFKR++R+ L Y+C++ C +D RN+C
Sbjct: 665 VSSGQYICSICSDRASGKHYGVFSCEGCKGFFKRTVRKELTYICRDSQECQIDKRLRNRC 724
Query: 117 QACRFSKCLQVKMNR 131
Q CR+ KCL+ M R
Sbjct: 725 QYCRYQKCLRAGMRR 739
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ C+++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCVINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|340714852|ref|XP_003395937.1| PREDICTED: ecdysone-induced protein 78C-like [Bombus terrestris]
Length = 508
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C+VCGDKASG HYGV SC+GC+GFF+RSI++ +EY C + G+C+V RN+CQ CRF
Sbjct: 76 VACRVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLKDGNCLVIRISRNRCQYCRF 135
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 136 KKCLAVGMSRDSV 148
>gi|441616023|ref|XP_004088336.1| PREDICTED: nuclear receptor ROR-alpha [Nomascus leucogenys]
Length = 493
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 31 TMVKASLRTLLFISMSSF---FPVFVWTG-ITSMDVL-CKVCGDKASGKHYGVPSCDGCR 85
TMV A + L+ I+ SF PV+V T ++ ++++ CK+CGDK+SG HYGV +C+GC+
Sbjct: 6 TMVNAFI-ILVDIAKWSFMDTLPVYVATNNVSQIEIIPCKICGDKSSGIHYGVITCEGCK 64
Query: 86 GFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
GFF+RS + N Y C + +C++D T RN+CQ CR KCL V M+RDA+
Sbjct: 65 GFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 113
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ +V S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|432929881|ref|XP_004081273.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Oryzias latipes]
Length = 454
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGDKA+GKHYG SCDGC+GFF+RSIR++ Y C+ CIVD +RNQC+ CR +K
Sbjct: 61 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCRFSRQCIVDKDKRNQCRFCRLNK 120
Query: 124 CLQVKMNRDAM 134
C + M ++A+
Sbjct: 121 CFRAGMKKEAV 131
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 16/136 (11%)
Query: 6 LPLAETIDHGR-KNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGIT------ 58
+P +I +G N+QIN S+M ++L + S P F ++
Sbjct: 34 VPGTPSIGYGPISNSQIN-------SSMSVSALHAV--SSSDDVKPPFGLKSVSGSGPML 84
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+CQ
Sbjct: 85 SQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRCQY 144
Query: 119 CRFSKCLQVKMNRDAM 134
CR+ KCL + M R+A+
Sbjct: 145 CRYQKCLAMGMKREAV 160
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 128 ICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDSKECVIDKRQRNRCQYCRYQ 187
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 188 KCLAMGMKREAV 199
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 132 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKK 191
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 192 CLEMGMKMESV 202
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ C+++ RN+CQ CR K
Sbjct: 137 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCVINKHHRNRCQFCRLKK 196
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 197 CLEMGMKMESV 207
>gi|170062760|ref|XP_001866809.1| ecdysone-inducible protein E78A [Culex quinquefasciatus]
gi|167880574|gb|EDS43957.1| ecdysone-inducible protein E78A [Culex quinquefasciatus]
Length = 489
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 27 VACKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 86
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 87 KKCLAVGMSRDSV 99
>gi|156556061|emb|CAO79100.1| ecdysone-induced protein 78C [Aedes aegypti]
gi|403182348|gb|EAT48623.2| AAEL000327-PA [Aedes aegypti]
Length = 431
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 24 VACKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 83
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 84 KKCLAVGMSRDSV 96
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S ++CKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQ
Sbjct: 32 SPALVCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQ 91
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ MN+DA+
Sbjct: 92 ACRLKKCLQAGMNKDAV 108
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ CI+D +RN+CQ CR+
Sbjct: 143 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCIIDKRQRNRCQYCRYQ 202
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 203 KCLAMGMKREAV 214
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQ 210
Query: 123 KCLQVKMNRDAM 134
+C+ + M +D++
Sbjct: 211 RCMSLGMKQDSV 222
>gi|224486339|gb|ACN51936.1| ultraspiracle [Daphnia magna]
Length = 111
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 62/78 (79%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C++D +RN+C
Sbjct: 5 LSNSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRQCLIDKRQRNRC 64
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCLQ+ M R+A+
Sbjct: 65 QYCRYQKCLQMGMKREAV 82
>gi|118344438|ref|NP_001072044.1| nuclear receptor [Ciona intestinalis]
gi|70571388|dbj|BAE06736.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD+ASG+HYG SC+GC+GFFKRS+R+ L Y C+ C V+ T RN+CQ CRF
Sbjct: 205 LCVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRDCSVNKTHRNRCQYCRFQ 264
Query: 123 KCLQVKMNRDAM 134
KC+ + M D++
Sbjct: 265 KCVLMGMKSDSV 276
>gi|118344170|ref|NP_001071910.1| nuclear receptor [Ciona intestinalis]
gi|92081500|dbj|BAE93297.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD+ASG+HYG SC+GC+GFFKRS+R+ L Y C+ C V+ T RN+CQ CRF
Sbjct: 205 LCVVCGDRASGRHYGAKSCEGCKGFFKRSVRKKLTYTCRGSRDCSVNKTHRNRCQYCRFQ 264
Query: 123 KCLQVKMNRDAM 134
KC+ + M D++
Sbjct: 265 KCVLMGMKSDSV 276
>gi|189164166|gb|ACD77184.1| putative hepatocyte nuclear factor 4 nuclear hormone receptor
[Callosobruchus maculatus]
Length = 507
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
T + C +CGD+A+GKHYG SCDGC+GFF+RS R+N Y C+ +C+VD +RNQC+
Sbjct: 77 TGLSQQCAICGDRATGKHYGAASCDGCKGFFRRSARKNHLYTCRFNRNCVVDKDKRNQCR 136
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KC + M ++A+
Sbjct: 137 YCRLRKCFKAGMKKEAV 153
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 74 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGNMASFTKHIC 130
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 131 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 190
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 191 LAMGMKREAV 200
>gi|397515464|ref|XP_003827971.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Pan paniscus]
gi|426379297|ref|XP_004056337.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Gorilla gorilla
gorilla]
Length = 493
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 76/109 (69%), Gaps = 6/109 (5%)
Query: 31 TMVKASLRTLLFISMSSF---FPVFVWTG-ITSMDVL-CKVCGDKASGKHYGVPSCDGCR 85
TMV A + L+ ++ SF PV+V T ++ ++++ CK+CGDK+SG HYGV +C+GC+
Sbjct: 6 TMVNAFI-ILMDVAKWSFMETLPVYVATNNVSQIEIIPCKICGDKSSGIHYGVITCEGCK 64
Query: 86 GFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
GFF+RS + N Y C + +C++D T RN+CQ CR KCL V M+RDA+
Sbjct: 65 GFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 113
>gi|358333094|dbj|GAA40423.2| nuclear receptor subfamily 4 group A member 3, partial [Clonorchis
sinensis]
Length = 1180
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGD A+ +HYGV +C+GC+GFFKR+I++N +YVC + +C+VD RRN+CQ CRF K
Sbjct: 862 CLVCGDSAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQSKNCVVDKRRRNRCQYCRFQK 921
Query: 124 CLQVKMNRDAM 134
CL+V M ++ +
Sbjct: 922 CLKVGMVKEVV 932
>gi|312119609|ref|XP_003151713.1| hypothetical protein LOAG_16177 [Loa loa]
gi|307753122|gb|EFO12356.1| hypothetical protein LOAG_16177, partial [Loa loa]
Length = 134
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 58/70 (82%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +CGDKASGKHY V SC+GC+GFF+R+I++ +EYVC ++G+CIVD RN+CQ+CRF
Sbjct: 64 FCIICGDKASGKHYNVSSCEGCKGFFRRTIQKKIEYVCYKQGNCIVDQKNRNRCQSCRFQ 123
Query: 123 KCLQVKMNRD 132
KCLQ+ M ++
Sbjct: 124 KCLQLGMRQE 133
>gi|227150229|gb|ACP19739.1| putative retinoid X receptor [Calanus finmarchicus]
Length = 405
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C+E C++D +RN+CQ CR++
Sbjct: 80 MCSICGDRASGKHYGVYSCEGCKGFFKRTVRKELSYACREDKQCLIDKRQRNRCQFCRYN 139
Query: 123 KCLQVKMNRDAM 134
KC+ + M R+A+
Sbjct: 140 KCMAMGMKREAV 151
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ +V S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 9 PGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 68
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 69 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 128
Query: 133 AM 134
A+
Sbjct: 129 AV 130
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 84 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGNMASFTKHIC 140
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 141 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 200
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 201 LAMGMKREAV 210
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 126 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCVIDKRQRNRCQYCRYM 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLAMGMKREAI 197
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 81 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRSCTIDKRQRNRCQFCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 141 KCLSMGMKREAV 152
>gi|317419814|emb|CBN81850.1| Hepatocyte nuclear factor 4, gamma [Dicentrarchus labrax]
Length = 455
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGDKA+GKHYG SCDGC+GFF+RSIR++ Y C+ CIVD +RNQC+ CR +K
Sbjct: 62 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYTCRFSRQCIVDKDKRNQCRFCRLNK 121
Query: 124 CLQVKMNRDAM 134
C + M ++A+
Sbjct: 122 CFRAGMKKEAV 132
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 56 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGNMASFTKHIC 112
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 113 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 172
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 173 LAMGMKREAV 182
>gi|347967177|ref|XP_320944.5| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|347967179|ref|XP_003436029.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|347967181|ref|XP_003436030.1| AGAP002095-PD [Anopheles gambiae str. PEST]
gi|333469722|gb|EAA01003.6| AGAP002095-PA [Anopheles gambiae str. PEST]
gi|333469723|gb|EGK97383.1| AGAP002095-PB [Anopheles gambiae str. PEST]
gi|333469725|gb|EGK97385.1| AGAP002095-PD [Anopheles gambiae str. PEST]
Length = 515
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 165 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 224
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 225 KCLACGMKREAV 236
>gi|334333054|ref|XP_001372755.2| PREDICTED: nuclear receptor ROR-beta [Monodelphis domestica]
Length = 505
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 76 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 135
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 136 CLALGMSRDAV 146
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+NL Y C+ G C ++ RN+CQ CR +
Sbjct: 114 CVVCGDKASGRHYGAVSCEGCKGFFKRSIRKNLVYTCRGSGECAINKLHRNRCQYCRLQR 173
Query: 124 CLQVKMNRDAM 134
C+ + M ++++
Sbjct: 174 CIALGMKQESV 184
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 56/72 (77%), Gaps = 1/72 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD T RNQCQACR
Sbjct: 127 LVCSVCGDASSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGSCLVDKTHRNQCQACR 186
Query: 121 FSKCLQVKMNRD 132
KC+++ MN+D
Sbjct: 187 LKKCIEMGMNKD 198
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 38 RTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLE 97
+TL+ S + P + T + ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L
Sbjct: 57 QTLVQASRTPPPPWSIPTKKGTPGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLI 116
Query: 98 YVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
Y C+ G CIVD RNQCQACR KCL + MN+D +
Sbjct: 117 YRCQAGTGRCIVDKAHRNQCQACRLKKCLAMGMNKDVI 154
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C+VD +RN+CQ CR+
Sbjct: 159 ICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDRNCMVDKRQRNRCQYCRYQ 218
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 219 KCLGMGMRREAV 230
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 143 QYCRYQKCLAMGMKREAV 160
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 126 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCVIDKRQRNRCQYCRYM 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLAMGMKREAI 197
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACRFS 122
C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQACR
Sbjct: 60 CVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLK 119
Query: 123 KCLQVKMNRDAM 134
KCLQ+ MN+DA+
Sbjct: 120 KCLQMGMNKDAV 131
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+CQ CR+
Sbjct: 92 LCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRCQYCRYQ 151
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 152 KCLAMGMKREAV 163
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 137 ICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYCRYQ 196
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 197 KCLAMGMKREAV 208
>gi|410908921|ref|XP_003967939.1| PREDICTED: hepatocyte nuclear factor 4-alpha-like [Takifugu
rubripes]
Length = 453
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGDKA+GKHYG SCDGC+GFF+RSIR++ Y C+ CIVD +RNQC+ CR +K
Sbjct: 60 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHIYTCRFSRQCIVDKDKRNQCRFCRLNK 119
Query: 124 CLQVKMNRDAM 134
C + M ++A+
Sbjct: 120 CFRAGMKKEAV 130
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ M A+ + + ++SS P+ GI +M+ +C +CGD++S
Sbjct: 76 PGMNFMTHANPQLNVLNNVSSSEDVKPLPGLPGIGNMNYPSTSPGSLAKHICAICGDRSS 135
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 136 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE 195
Query: 133 AM 134
A+
Sbjct: 196 AV 197
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 56/77 (72%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 194 SKQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 253
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 254 YCRLKKCLKMGMRREAV 270
>gi|158296072|ref|XP_557244.3| AGAP006571-PA [Anopheles gambiae str. PEST]
gi|157016337|gb|EAL40119.3| AGAP006571-PA [Anopheles gambiae str. PEST]
Length = 652
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 155 VACKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 214
Query: 122 SKCLQVKMNRD 132
KCL V M+RD
Sbjct: 215 KKCLSVGMSRD 225
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQ 117
+ + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 193 SKQSIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQ 252
Query: 118 ACRFSKCLQVKMNRDAM 134
CR KCL++ M R+A+
Sbjct: 253 YCRLKKCLKMGMRREAV 269
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 124 CLQVKMNRD 132
CL+V M R+
Sbjct: 142 CLKVGMRRE 150
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 11 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQK 70
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 71 CLALGMSRDAV 81
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ C+++ RN+CQ CR K
Sbjct: 117 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCVINKHHRNRCQFCRLKK 176
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 177 CLEMGMKMESV 187
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 126 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCVIDKRQRNRCQYCRYM 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLAMGMKREAV 197
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 77 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 136
Query: 124 CLQVKMNRDAM 134
CL+V M R+A+
Sbjct: 137 CLKVGMRREAV 147
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+C
Sbjct: 120 MLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRC 179
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 180 QYCRYQKCLAMGMKREAV 197
>gi|2352809|gb|AAB69281.1| developmental orphan receptor-1 precursor [Ambystoma mexicanum]
Length = 416
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ CI++ RN+CQ CR
Sbjct: 150 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKECIINKHHRNRCQYCRLQ 209
Query: 123 KCLQVKMNRDAM 134
+C+ + M +D++
Sbjct: 210 RCIALGMKQDSV 221
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQ 210
Query: 123 KCLQVKMNRDAM 134
+C+ + M +D++
Sbjct: 211 RCIALGMKQDSV 222
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 76 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRYQ 135
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 136 KCLGMGMKREAV 147
>gi|170061655|ref|XP_001866328.1| retinoid x receptor [Culex quinquefasciatus]
gi|167879792|gb|EDS43175.1| retinoid x receptor [Culex quinquefasciatus]
Length = 478
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 114 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 173
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 174 KCLACGMKREAV 185
>gi|157132575|ref|XP_001656078.1| retinoid x receptor (rxr) [Aedes aegypti]
gi|108884373|gb|EAT48598.1| AAEL000395-PA [Aedes aegypti]
Length = 484
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 137 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 196
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 197 KCLACGMKREAV 208
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 87 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 146
Query: 124 CLQVKMNRD 132
CL+V M R+
Sbjct: 147 CLKVGMRRE 155
>gi|10946383|gb|AAG24886.1|AF305213_1 ultraspiracle isoform-A [Aedes aegypti]
Length = 484
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 137 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 196
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 197 KCLACGMKREAV 208
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 61/80 (76%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
T ++ +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN
Sbjct: 445 TALSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRN 504
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR+ KCL + M R+A+
Sbjct: 505 RCQYCRYQKCLAMGMKREAV 524
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+CQ CR+
Sbjct: 125 LCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRCQYCRYQ 184
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 185 KCLAMGMKREAV 196
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+C
Sbjct: 86 MLSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRC 145
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 146 QYCRYQKCLAMGMKREAV 163
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 169 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 228
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 229 KCLAMGMKREAV 240
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 221 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 280
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 281 KCLAMGMKREAV 292
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 106 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGTMASFTKHIC 162
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 163 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 222
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 223 LAMGMKREAV 232
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 61 MMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 120
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 121 QYCRYQKCLAMGMKREAV 138
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 119 ICTICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 178
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 179 KCLAMGMKREAV 190
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 130 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 189
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 190 KCLAMGMKREAV 201
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 102 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 161
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 162 KCLAMGMKREAV 173
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVC D +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 37 LLCKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQACR 96
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 97 LKKCLQAGMNKDAV 110
>gi|347967175|ref|XP_003436028.1| AGAP002095-PC [Anopheles gambiae str. PEST]
gi|333469724|gb|EGK97384.1| AGAP002095-PC [Anopheles gambiae str. PEST]
Length = 484
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 134 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 193
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 194 KCLACGMKREAV 205
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|293344662|ref|XP_002725756.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Rattus norvegicus]
gi|293356460|ref|XP_002728915.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 470
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 56 GITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
G ++V+ CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN
Sbjct: 12 GTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRN 71
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR KCL + M+RDA+
Sbjct: 72 RCQHCRLQKCLALGMSRDAV 91
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 76 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRYQ 135
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 136 KCLGMGMKREAV 147
>gi|124028632|sp|P45446.3|RORB_RAT RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
Length = 470
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 56 GITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
G ++V+ CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN
Sbjct: 12 GTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRN 71
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR KCL + M+RDA+
Sbjct: 72 RCQHCRLQKCLALGMSRDAV 91
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 151 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 210
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 211 KCLAMGMKREAV 222
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 34 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 93
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 94 CLALGMSRDAV 104
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 76 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRYQ 135
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 136 KCLGMGMKREAV 147
>gi|149062564|gb|EDM12987.1| RAR-related orphan receptor beta (predicted) [Rattus norvegicus]
Length = 452
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 56 GITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
G ++V+ CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN
Sbjct: 12 GTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRN 71
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR KCL + M+RDA+
Sbjct: 72 RCQHCRLQKCLALGMSRDAV 91
>gi|112821692|ref|NP_666207.3| nuclear receptor ROR-beta isoform 2 [Mus musculus]
gi|124028631|sp|Q8R1B8.3|RORB_MOUSE RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|110589525|gb|ABG77270.1| retinoid-related orphan receptor beta 2 isoform [Mus musculus]
Length = 470
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 56 GITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
G ++V+ CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN
Sbjct: 12 GTAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRN 71
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR KCL + M+RDA+
Sbjct: 72 RCQHCRLQKCLALGMSRDAV 91
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ CI++ RN+CQ CR
Sbjct: 113 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQ 172
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 173 RCIAFGMKQDSV 184
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+CQ CR+
Sbjct: 89 LCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRCQYCRYQ 148
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 149 KCLACGMKREAV 160
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ CI++ RN+CQ CR
Sbjct: 113 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQ 172
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 173 RCIAFGMKQDSV 184
>gi|124054090|gb|ABM89229.1| retinoid X receptor alpha a [Danio rerio]
Length = 340
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 130 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 189
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 190 KCLAMGMKREAV 201
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+CQ CR+
Sbjct: 92 LCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRCQYCRYQ 151
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 152 KCLAMGMKREAV 163
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 82 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 141
Query: 124 CLQVKMNRD 132
CL+V M R+
Sbjct: 142 CLKVGMRRE 150
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ +G + Q++ + P S+ ++ L ++ P + S +C
Sbjct: 104 VPTTPTLGYGTGSPQLSSPMNPASSS---EDVKPPLGLNGVLKVPAHPSGNMASFTKHIC 160
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 161 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 220
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 221 LAMGMKREAV 230
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|324507402|gb|ADY43138.1| Nuclear hormone receptor E75 [Ascaris suum]
Length = 631
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LCKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C V RN+CQ CRF
Sbjct: 239 LCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQMEYRCLRDGRCQVYRLNRNRCQYCRFK 298
Query: 123 KCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 299 KCLAVGMSRDSV 310
>gi|390357873|ref|XP_780389.2| PREDICTED: hepatocyte nuclear factor 4-beta-like isoform 2
[Strongylocentrotus purpuratus]
Length = 468
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD+A+GKHYG SCDGC+GFF+RS+R+N +Y C+ C+VD +RNQC+ CR K
Sbjct: 21 CSICGDRATGKHYGAASCDGCKGFFRRSVRKNHQYTCRFCRGCVVDKDKRNQCRYCRLKK 80
Query: 124 CLQVKMNRDA 133
C + M ++A
Sbjct: 81 CFRAGMKKEA 90
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLAGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 188 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 247
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 248 KCLAMGMKREAV 259
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 130 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 189
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 190 KCLAMGMKREAV 201
>gi|10946385|gb|AAG24887.1|AF305214_1 ultraspiracle isoform-B [Aedes aegypti]
gi|403182355|gb|EJY57333.1| AAEL000395-PB [Aedes aegypti]
Length = 459
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +C +D +RN+CQ CR+
Sbjct: 112 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREDKNCTIDKRQRNRCQYCRYQ 171
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 172 KCLACGMKREAV 183
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 39 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 97
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 98 NQCQACRLKKCLQAGMNQDAV 118
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 58/71 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 126 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDRNCVIDKRQRNRCQYCRYM 185
Query: 123 KCLQVKMNRDA 133
KCL + M R+A
Sbjct: 186 KCLAMGMKREA 196
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 144 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 203
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 204 KCLAMGMKREAV 215
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 124 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 183
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 184 KCLAMGMKREAV 195
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 164 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 223
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 224 KCLAMGMKREAV 235
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 128 ICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQ 187
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 188 KCLAMGMKREAV 199
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLAGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|339241333|ref|XP_003376592.1| nuclear hormone receptor E75 [Trichinella spiralis]
gi|316974682|gb|EFV58163.1| nuclear hormone receptor E75 [Trichinella spiralis]
Length = 534
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 109 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVYRLNRNRCQYCRF 168
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 169 KKCLAVGMSRDSV 181
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 111 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 171 KCLAMGMKREAV 182
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 118 MVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRC 177
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ +
Sbjct: 178 QYCRYQKCLAMGMKREVV 195
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 125 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 184
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 185 KCLAMGMKREAV 196
>gi|256052096|ref|XP_002569614.1| nuclear hormone receptor nor-1/nor-2 [Schistosoma mansoni]
Length = 704
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD A+ +HYGV +C+GC+GFFKR+I++N +YVC + +C+VD RRN+CQ CRF
Sbjct: 247 LCLVCGDNAACQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQ 306
Query: 123 KCLQVKMNRDAM 134
KCL+V M ++ +
Sbjct: 307 KCLKVGMVKEVV 318
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 127 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKECLIDKRQRNRCQYCRYQ 186
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 187 KCLAMGMKREAV 198
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 85 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQK 144
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 145 CLALGMSRDAV 155
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL M R+A+
Sbjct: 143 QYCRYQKCLACGMKREAV 160
>gi|130490232|ref|NP_001076325.1| nuclear receptor ROR-beta [Danio rerio]
gi|126508455|gb|ABO15413.1| retinoid-related orphan receptor b [Danio rerio]
Length = 466
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 111 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 171 KCLAMGMKREAV 182
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 50 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGTMASFTKHIC 106
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 107 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 166
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 167 LAMGMKREAV 176
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 27 MMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 86
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 87 QYCRYQKCLAMGMKREAV 104
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 193
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 194 KCLAMGMKREAV 205
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 193
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 194 KCLAMGMKREAV 205
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 193
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 194 KCLAMGMKREAV 205
>gi|296202764|ref|XP_002806908.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group
D member 1 [Callithrix jacchus]
Length = 612
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 134 MVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRC 193
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ +
Sbjct: 194 QYCRYQKCLAMGMKREVV 211
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYM 175
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 176 KCLSMGMKREAV 187
>gi|387539836|gb|AFJ70545.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|380818212|gb|AFE80980.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|383423059|gb|AFH34743.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
gi|384950492|gb|AFI38851.1| nuclear receptor subfamily 1 group D member 1 [Macaca mulatta]
Length = 613
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 27 MMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 86
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 87 QYCRYQKCLAMGMKREAV 104
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 130 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQ 189
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 190 KCLAMGMKREAV 201
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 12 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 71
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 72 CLALGMSRDAV 82
>gi|357615819|gb|EHJ69847.1| hypothetical protein KGM_01261 [Danaus plexippus]
Length = 120
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE----RGHCIVDVTRRNQ 115
+D+ C VCGD++SGKHYG+ SCDGC GFFKRSI RN Y CK +G C VD T RNQ
Sbjct: 14 LDIPCNVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRVYTCKAGGEMKGRCPVDKTHRNQ 73
Query: 116 CQACRFSKCLQVKMNRDAM 134
C+ACR +KC Q MN+D +
Sbjct: 74 CRACRLAKCFQANMNKDVV 92
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C++ +C++D +RN+CQ CR+
Sbjct: 122 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKELTYACRDDKNCMIDKRQRNRCQYCRYM 181
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 182 KCLSMGMKREAV 193
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P ST ++ L ++ P + S +C
Sbjct: 85 VPTTPTLGFGTGSPQLNSPMNPVSST---EDIKPPLGLNGVLKVPAHPSGTMASFTKHIC 141
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 142 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 201
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 202 LAMGMKREAV 211
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 85 MVSQKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQRNRC 144
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ +
Sbjct: 145 QYCRYQKCLAMGMKREVV 162
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 116 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYM 175
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 176 KCLSMGMKREAV 187
>gi|148230541|ref|NP_001087654.1| nuclear receptor subfamily 2 group C member 1-B [Xenopus laevis]
gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-B;
AltName: Full=Developmental orphan receptor 2-B;
Short=DOR2-B; Short=xDOR2-B; AltName: Full=Orphan
nuclear receptor TR2-B; AltName: Full=Testicular
receptor 2-B
gi|51703645|gb|AAH81046.1| MGC81787 protein [Xenopus laevis]
Length = 637
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 151 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLIYTCRGSKDCVINKHYRNRCQYCRLQ 210
Query: 123 KCLQVKMNRDAM 134
+C+ + M +D++
Sbjct: 211 RCISLGMKQDSV 222
>gi|402900086|ref|XP_003913011.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Papio
anubis]
Length = 613
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|195592078|ref|XP_002085763.1| GD14944 [Drosophila simulans]
gi|194197772|gb|EDX11348.1| GD14944 [Drosophila simulans]
Length = 612
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/71 (61%), Positives = 53/71 (74%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 385 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 444
Query: 122 SKCLQVKMNRD 132
KCL M+RD
Sbjct: 445 KKCLSAGMSRD 455
>gi|391348045|ref|XP_003748262.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Metaseiulus occidentalis]
Length = 534
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 54/79 (68%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G TS C VCGD+ASG+HYG SC+GC+GFFKRSIR+ L Y C+ +C V RN+
Sbjct: 103 GRTSPSESCVVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYACRGDRNCEVTKHHRNR 162
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR KCLQ+ M DA+
Sbjct: 163 CQHCRLQKCLQMGMRADAV 181
>gi|363809055|dbj|BAL41655.1| ultraspiracle protein [Scirpophaga incertulas]
Length = 408
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+ +CI+D +RN+CQ CR+
Sbjct: 59 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRGERNCIIDKRQRNRCQYCRYQ 118
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 119 KCLACGMKREAV 130
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 6 LPLAETIDHGRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDV-LC 64
+P T+ G + Q+N + P S+ ++ L ++ P ++S +C
Sbjct: 56 VPTTPTLGFGTGSPQLNSPMNPVSSS---EDIKPPLGLNGVLKVPAHPSGNMSSFTKHIC 112
Query: 65 KVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKC 124
+CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ KC
Sbjct: 113 AICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 172
Query: 125 LQVKMNRDAM 134
L + M R+A+
Sbjct: 173 LAMGMKREAV 182
>gi|444714014|gb|ELW54902.1| Nuclear receptor subfamily 1 group D member 1 [Tupaia chinensis]
Length = 612
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQ 204
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 205 KCLAMGMKREAV 216
>gi|355768148|gb|EHH62688.1| V-erbA-related protein 1 [Macaca fascicularis]
Length = 614
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 275 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 334
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 335 KCLAMGMKREAV 346
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 111 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 170
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 171 KCLAMGMKREAV 182
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 103 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 162
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 163 KCLAMGMKREAV 174
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 135 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCVIDKRQRNRCQYCRYQ 194
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 195 KCLAMGMKREAV 206
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 51/69 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR K
Sbjct: 74 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 133
Query: 124 CLQVKMNRD 132
CL+V M R+
Sbjct: 134 CLKVGMRRE 142
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQ 204
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 205 KCLAMGMKREAV 216
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 201
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 202 KCLAMGMKREAV 213
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 31 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 89
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 90 NQCQACRLKKCLQAGMNQDAV 110
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|410978155|ref|XP_003995462.1| PREDICTED: nuclear receptor ROR-beta [Felis catus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|193211376|ref|NP_001123209.1| nuclear receptor ROR-beta [Ovis aries]
gi|152940827|gb|ABS44878.1| retinoid-related orphan receptor beta [Ovis aries]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 25 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 84
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 85 CLALGMSRDAV 95
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|395826494|ref|XP_003786453.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Otolemur
garnettii]
Length = 613
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|158931496|gb|ABW83196.1| ultraspiracle [Lucilia sericata]
Length = 174
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 7 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQ 66
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 67 KCLACGMKREAV 78
>gi|2529508|gb|AAB81178.1| developmental orphan receptor 2 [Xenopus laevis]
Length = 542
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 124 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYTCRGSKDCVINKHYRNRCQYCRLQ 183
Query: 123 KCLQVKMNRDAM 134
+C+ + M +D++
Sbjct: 184 RCMSLGMKQDSV 195
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/72 (54%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ CI++ RN+CQ CR
Sbjct: 68 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQ 127
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 128 RCIAFGMKQDSV 139
>gi|114625040|ref|XP_528326.2| PREDICTED: nuclear receptor ROR-beta isoform 2 [Pan troglodytes]
gi|403256470|ref|XP_003920899.1| PREDICTED: nuclear receptor ROR-beta [Saimiri boliviensis
boliviensis]
gi|426362025|ref|XP_004048183.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Gorilla gorilla
gorilla]
gi|124028630|sp|Q92753.3|RORB_HUMAN RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|355567837|gb|EHH24178.1| Retinoid-related orphan receptor-beta [Macaca mulatta]
gi|355753418|gb|EHH57464.1| Retinoid-related orphan receptor-beta [Macaca fascicularis]
Length = 470
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 21 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 80
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 81 CLALGMSRDAV 91
>gi|431898686|gb|ELK07066.1| Nuclear receptor ROR-beta, partial [Pteropus alecto]
Length = 460
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 11 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 70
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 71 CLALGMSRDAV 81
>gi|300798568|ref|NP_001179587.1| nuclear receptor ROR-beta [Bos taurus]
gi|296484753|tpg|DAA26868.1| TPA: RAR-related orphan receptor B [Bos taurus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|400974222|ref|NP_001257887.1| nuclear receptor ROR-beta [Rattus norvegicus]
gi|109463688|ref|XP_001079696.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus norvegicus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|37194675|gb|AAH58269.1| Rorb protein, partial [Mus musculus]
Length = 462
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 13 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 72
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 73 CLALGMSRDAV 83
>gi|112821700|ref|NP_001036819.1| nuclear receptor ROR-beta isoform 1 [Mus musculus]
gi|110589523|gb|ABG77269.1| retinoid-related orphan receptor beta 1 isoform [Mus musculus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|403304593|ref|XP_003942879.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Saimiri
boliviensis boliviensis]
Length = 615
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 124 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 183
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 184 NRCQQCRFKKCLSVGMSRDAV 204
>gi|397522886|ref|XP_003831479.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
paniscus]
Length = 614
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|296189722|ref|XP_002742890.1| PREDICTED: nuclear receptor ROR-beta [Callithrix jacchus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|216409698|dbj|BAH02286.1| retinoid-related orphan receptor beta [Homo sapiens]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|94467591|dbj|BAE93688.1| RAR related orphan receptor beta [Mus musculus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|19743907|ref|NP_008845.2| nuclear receptor ROR-beta [Homo sapiens]
gi|386781838|ref|NP_001247680.1| nuclear receptor ROR-beta [Macaca mulatta]
gi|114625038|ref|XP_001144112.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Pan troglodytes]
gi|397503245|ref|XP_003822240.1| PREDICTED: nuclear receptor ROR-beta [Pan paniscus]
gi|402897652|ref|XP_003911863.1| PREDICTED: nuclear receptor ROR-beta [Papio anubis]
gi|426362023|ref|XP_004048182.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Gorilla gorilla
gorilla]
gi|62022574|gb|AAH51830.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739507|gb|AAH93774.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739746|gb|AAH93772.1| RAR-related orphan receptor B [Homo sapiens]
gi|119582956|gb|EAW62552.1| RAR-related orphan receptor B [Homo sapiens]
gi|167773493|gb|ABZ92181.1| RAR-related orphan receptor B [synthetic construct]
gi|189066675|dbj|BAG36222.1| unnamed protein product [Homo sapiens]
gi|307685949|dbj|BAJ20905.1| RAR-related orphan receptor B [synthetic construct]
gi|325495575|gb|ADZ17393.1| RAR-related orphan receptor beta [Homo sapiens]
gi|380783487|gb|AFE63619.1| nuclear receptor ROR-beta [Macaca mulatta]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|426348347|ref|XP_004041798.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|60654203|gb|AAX29794.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
Length = 615
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|115430095|ref|NP_001068579.1| hepatocyte nuclear factor 4-gamma [Danio rerio]
gi|115313265|gb|AAI24294.1| Hepatocyte nuclear factor 4, gamma [Danio rerio]
gi|182891948|gb|AAI65580.1| Hnf4g protein [Danio rerio]
Length = 444
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGDKA+GKHYG SCDGC+GFF+RSIR++ Y C+ C+VD +RNQC+ CR K
Sbjct: 48 CAICGDKATGKHYGASSCDGCKGFFRRSIRKSHVYSCRFNRQCVVDKDKRNQCRFCRLHK 107
Query: 124 CLQVKMNRDAM 134
C + M ++A+
Sbjct: 108 CFRAGMKKEAV 118
>gi|13430848|ref|NP_068370.1| nuclear receptor subfamily 1 group D member 1 [Homo sapiens]
gi|114667603|ref|XP_511468.2| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Pan
troglodytes]
gi|119100|sp|P20393.1|NR1D1_HUMAN RecName: Full=Nuclear receptor subfamily 1 group D member 1;
AltName: Full=Rev-erbA-alpha; AltName:
Full=V-erbA-related protein 1; Short=EAR-1
gi|537520|gb|AAA52335.1| triiodothyronine receptor [Homo sapiens]
gi|33525229|gb|AAH56148.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|60820040|gb|AAX36521.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|61363220|gb|AAX42355.1| nuclear receptor subfamily 1 group D member 1 [synthetic construct]
gi|112180498|gb|AAH47875.1| Nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|119581040|gb|EAW60636.1| nuclear receptor subfamily 1, group D, member 1 [Homo sapiens]
gi|208966878|dbj|BAG73453.1| nuclear receptor subfamily 1, group D, member 1 [synthetic
construct]
gi|325495533|gb|ADZ17372.1| nuclear receptor Rev-ErbA-alpha [Homo sapiens]
gi|410215240|gb|JAA04839.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262434|gb|JAA19183.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410262436|gb|JAA19184.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410306374|gb|JAA31787.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353607|gb|JAA43407.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
gi|410353609|gb|JAA43408.1| nuclear receptor subfamily 1, group D, member 1 [Pan troglodytes]
Length = 614
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|410980965|ref|XP_003996844.1| PREDICTED: nuclear receptor subfamily 1 group D member 1 [Felis
catus]
Length = 611
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 121 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 180
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 181 NRCQQCRFKKCLSVGMSRDAV 201
>gi|344271210|ref|XP_003407434.1| PREDICTED: nuclear receptor ROR-beta, partial [Loxodonta africana]
Length = 458
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 9 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 68
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 69 CLALGMSRDAV 79
>gi|332236552|ref|XP_003267464.1| PREDICTED: nuclear receptor ROR-beta [Nomascus leucogenys]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|291383385|ref|XP_002708255.1| PREDICTED: RAR-related orphan receptor B [Oryctolagus cuniculus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|158253732|gb|AAI54181.1| Zgc:103631 protein [Danio rerio]
Length = 344
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/74 (62%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+LCKVC D +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 37 LLCKVCSDTSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQAGTGMCPVDKAHRNQCQACR 96
Query: 121 FSKCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 97 LKKCLQAGMNKDAV 110
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 37 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 96
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 97 KCLAMGMKREAV 108
>gi|47207654|emb|CAF91378.1| unnamed protein product [Tetraodon nigroviridis]
Length = 237
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 119 ICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKECLIDKRQRNRCQYCRYQ 178
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 179 KCLAMGMKREAV 190
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 88 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 147
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 148 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 207
Query: 133 AM 134
A+
Sbjct: 208 AV 209
>gi|194224754|ref|XP_001488198.2| PREDICTED: nuclear receptor ROR-beta [Equus caballus]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|74138696|dbj|BAE27164.1| unnamed protein product [Mus musculus]
Length = 615
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 124 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 183
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 184 NRCQQCRFKKCLSVGMSRDAV 204
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ CIVD +RN+CQ CR+
Sbjct: 142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQ 201
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 202 KCLNTGMKREAV 213
>gi|351714484|gb|EHB17403.1| Nuclear receptor ROR-beta [Heterocephalus glaber]
Length = 510
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 21 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 80
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 81 CLALGMSRDAV 91
>gi|301779115|ref|XP_002924974.1| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Ailuropoda melanoleuca]
Length = 613
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 122 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 181
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 182 NRCQQCRFKKCLSVGMSRDAV 202
>gi|1619294|emb|CAA69929.1| nuclear orphan receptor ROR-beta [Homo sapiens]
Length = 459
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|2243140|emb|CAA67384.1| nuclear hormone receptor [Drosophila melanogaster]
Length = 865
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 365 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 424
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 425 KKCLSAGMSRDSV 437
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ CIVD +RN+CQ CR+
Sbjct: 128 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQ 187
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 188 KCLNTGMKREAV 199
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 59/72 (81%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C+VD +RN+CQ CR+
Sbjct: 161 ICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDRNCMVDKRQRNRCQYCRYQ 220
Query: 123 KCLQVKMNRDAM 134
KC+ + M R+A+
Sbjct: 221 KCIGMGMRREAV 232
>gi|291405975|ref|XP_002719395.1| PREDICTED: nuclear receptor subfamily 1, group D, member 1
[Oryctolagus cuniculus]
Length = 616
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 124 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 183
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 184 NRCQQCRFKKCLSVGMSRDAV 204
>gi|34223729|sp|P45447.3|E78C_DROME RecName: Full=Ecdysone-induced protein 78C; Short=DR-78; AltName:
Full=Nuclear receptor subfamily 1 group E member 1
Length = 866
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 365 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 424
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 425 KKCLSAGMSRDSV 437
>gi|7769648|gb|AAF69494.1| nuclear receptor E78A [Drosophila melanogaster]
Length = 866
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 365 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 424
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 425 KKCLSAGMSRDSV 437
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ CIVD +RN+CQ CR+
Sbjct: 142 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDTKGCIVDKRQRNRCQYCRYQ 201
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 202 KCLNTGMKREAV 213
>gi|24667937|ref|NP_524195.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|386771542|ref|NP_001246862.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|386771544|ref|NP_001246863.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
gi|23094217|gb|AAF51692.2| Ecdysone-induced protein 78C, isoform A [Drosophila melanogaster]
gi|383292049|gb|AFH04533.1| Ecdysone-induced protein 78C, isoform D [Drosophila melanogaster]
gi|383292050|gb|AFH04534.1| Ecdysone-induced protein 78C, isoform E [Drosophila melanogaster]
Length = 862
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 361 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 420
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 421 KKCLSAGMSRDSV 433
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 83 MLSQKRLCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 142
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ +
Sbjct: 143 QYCRYQKCLAMGMKREVI 160
>gi|343960182|dbj|BAK63945.1| nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 6/109 (5%)
Query: 31 TMVKASLRTLLFISMSSF---FPVFVWTG-ITSMDVL-CKVCGDKASGKHYGVPSCDGCR 85
TMV A + L+ + SF PV+V T + ++++ CK+CGDK+SG HYGV +C+GC+
Sbjct: 6 TMVNAFI-ILMDVPKWSFMETLPVYVATNNVAQIEIIPCKICGDKSSGIHYGVITCEGCK 64
Query: 86 GFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
GFF+RS + N Y C + +C++D T RN+CQ CR KCL V M+RDA+
Sbjct: 65 GFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 113
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 1/74 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
+ C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C++D RNQCQACR
Sbjct: 56 LTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVIDKAHRNQCQACR 115
Query: 121 FSKCLQVKMNRDAM 134
KCLQ+ MN+DA+
Sbjct: 116 LKKCLQMGMNKDAV 129
>gi|44885904|dbj|BAD12053.1| ultraspiracle protein [Lucilia sericata]
Length = 169
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+CQ CR+
Sbjct: 34 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRNCIIDKRQRNRCQYCRYQ 93
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 94 KCLACGMKREAV 105
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 199 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 258
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 259 KCLAMGMKREAV 270
>gi|383855824|ref|XP_003703410.1| PREDICTED: ecdysone-induced protein 78C-like [Megachile rotundata]
Length = 462
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C+VCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 30 VACRVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 89
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 90 KKCLAVGMSRDSV 102
>gi|334326740|ref|XP_001371708.2| PREDICTED: nuclear receptor ROR-beta-like [Monodelphis domestica]
Length = 663
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 13/99 (13%)
Query: 36 SLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRN 95
SL +LLF + P CK+CGDK+SG HYGV +C+GC+GFF+RS + N
Sbjct: 138 SLHSLLFCAQIEVIP-------------CKICGDKSSGIHYGVITCEGCKGFFRRSQQNN 184
Query: 96 LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
Y C + +C +D T RN+CQ CR KCL + M+RDA+
Sbjct: 185 ASYSCSRQRNCPIDRTSRNRCQHCRLQKCLALGMSRDAV 223
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 122 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 182 KCLVMGMKREAV 193
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
V C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 27 QVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRNCPIDQHHRNQCQYCR 86
Query: 121 FSKCLQVKMNRDAM 134
KC++V M R+A+
Sbjct: 87 LRKCMKVGMRREAV 100
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 160 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQ 219
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 220 KCLAMGMKREAV 231
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 58 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 117
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 118 KCLAMGMKREAV 129
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 31 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 89
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 90 NQCQACRLKKCLQAGMNQDAV 110
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 54 WTGITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTR 112
WT + ++V+ CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T
Sbjct: 8 WTKTSQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTN 67
Query: 113 RNQCQACRFSKCLQVKMNRDAM 134
RN+CQ CR KCL + M+RDA+
Sbjct: 68 RNRCQHCRLQKCLALGMSRDAV 89
>gi|281344606|gb|EFB20190.1| hypothetical protein PANDA_014399 [Ailuropoda melanoleuca]
Length = 603
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 112 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 171
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 172 NRCQQCRFKKCLSVGMSRDAV 192
>gi|195428126|ref|XP_002062125.1| GK16819 [Drosophila willistoni]
gi|194158210|gb|EDW73111.1| GK16819 [Drosophila willistoni]
Length = 1021
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 471 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 530
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 531 KKCLSAGMSRDSV 543
>gi|118776358|gb|ABL14196.1| nuclear receptor-like protein [Trichinella spiralis]
Length = 358
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 127 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVYRLNRNRCQYCRF 186
Query: 122 SKCLQVKMNRD 132
KCL V M+RD
Sbjct: 187 KKCLAVGMSRD 197
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRR 113
TG+ S + C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD R
Sbjct: 31 TGV-SPSLQCRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHR 89
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
NQCQACR KCLQ MN+DA+
Sbjct: 90 NQCQACRLKKCLQAGMNQDAV 110
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 229 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 288
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 289 KCLAMGMKREAV 300
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 149 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKDCVINKHHRNRCQYCRLQ 208
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 209 RCIAFGMKQDSV 220
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|198459164|ref|XP_002138650.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
gi|198136599|gb|EDY69208.1| GA24899 [Drosophila pseudoobscura pseudoobscura]
Length = 190
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 8 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 67
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 68 ACRLKKCLQMGMNKDAV 84
>gi|410049253|ref|XP_003952715.1| PREDICTED: nuclear receptor ROR-alpha [Pan troglodytes]
Length = 493
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 6/109 (5%)
Query: 31 TMVKASLRTLLFISMSSF---FPVFVWTG-ITSMDVL-CKVCGDKASGKHYGVPSCDGCR 85
TMV A + L+ + SF PV+V T + ++++ CK+CGDK+SG HYGV +C+GC+
Sbjct: 6 TMVNAFI-ILMDVPKWSFMETLPVYVATNNVAQIEIIPCKICGDKSSGIHYGVITCEGCK 64
Query: 86 GFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
GFF+RS + N Y C + +C++D T RN+CQ CR KCL V M+RDA+
Sbjct: 65 GFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 113
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 37 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRN 96
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 97 QCQYCRLKKCLKVGMRREAV 116
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR K
Sbjct: 202 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSNQDCIINKHHRNRCQFCRLKK 261
Query: 124 CLQVKM 129
CL++ M
Sbjct: 262 CLEMGM 267
>gi|402593257|gb|EJW87184.1| hypothetical protein WUBG_01907, partial [Wuchereria bancrofti]
Length = 446
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Query: 52 FVWTGITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDV 110
FVW ++V+ CKVCGDK+SG HYGV +C+GC+GFF+RS Y C + CIVD
Sbjct: 3 FVWLVSAQIEVIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSTLNNYQCPRQQKCIVDR 62
Query: 111 TRRNQCQACRFSKCLQVKMNRDAM 134
RN+CQ CR KCL++ M+RDA+
Sbjct: 63 VNRNRCQYCRLKKCLELGMSRDAV 86
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 14/122 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDVL-----------CKVCGDKAS 72
PG++ + S + + ++SS P+ GI +M+ L C +CGD++S
Sbjct: 114 PGINLVAPPSSQLNVVNNVSSSEDIKPLPGLPGIGNMNYLSTSPGPLVKHICAICGDRSS 173
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 174 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 233
Query: 133 AM 134
A+
Sbjct: 234 AV 235
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G+C VD RNQCQ
Sbjct: 122 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGNCTVDKAHRNQCQ 181
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL + MN+DA+
Sbjct: 182 ACRLKKCLNMGMNKDAV 198
>gi|440912616|gb|ELR62171.1| Nuclear receptor ROR-beta, partial [Bos grunniens mutus]
Length = 467
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 18 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 77
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 78 CLALGMSRDAV 88
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLMYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQC 116
TS + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQC
Sbjct: 156 TSPALSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGTGSCIVDKAHRNQC 215
Query: 117 QACRFSKCLQVKMNRDAM 134
QACR KCL MN+DA+
Sbjct: 216 QACRLKKCLNKGMNKDAV 233
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 74 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 133
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 134 KCLAMGMKREAV 145
>gi|355707861|gb|AES03087.1| nuclear receptor subfamily 1, group D, member 1 [Mustela putorius
furo]
Length = 619
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 126 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 185
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 186 NRCQQCRFKKCLSVGMSRDAV 206
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 76 NQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSTNCPIDQHHRNQCQY 135
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC+++ M R+A+
Sbjct: 136 CRLKKCMKMGMRREAV 151
>gi|5804932|emb|CAB53540.1| Rev-ErbAalpha protein [Homo sapiens]
Length = 614
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 123 TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 182
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 183 NRCQQCRFKKCLSVGMSRDAV 203
>gi|357609788|gb|EHJ66672.1| ecdysone-induced protein 78C [Danaus plexippus]
Length = 452
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF K
Sbjct: 55 CKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQFCRFKK 114
Query: 124 CLQVKMNRDAM 134
CL V M+RD++
Sbjct: 115 CLAVGMSRDSV 125
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 9/108 (8%)
Query: 26 LPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCR 85
LP T+V+AS + P + T + ++C VCGD +SGKHYG+ +C+GC
Sbjct: 62 LPNSQTLVQAS--------RTPPPPWSIPTKKGTPGLICVVCGDTSSGKHYGILACNGCS 113
Query: 86 GFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GFFKRS+RR L Y C+ G CIVD RNQCQACR KCL + MN+D
Sbjct: 114 GFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLAMGMNKD 161
>gi|152148438|gb|ABS29716.1| nuclear receptor [Dirofilaria immitis]
Length = 653
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 54 WTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEY-VCKERGHCIVDVTR 112
+T TS + LC+VCGD+ASG HYGV +C+GC+GFF+RSI++ ++Y C + CIV
Sbjct: 159 YTATTSNNYLCQVCGDRASGFHYGVFACEGCKGFFRRSIQQKIQYRPCTKSQQCIVARNN 218
Query: 113 RNQCQACRFSKCLQVKMNRDAM 134
RN+CQ CR KC++V M+R+A+
Sbjct: 219 RNRCQHCRLQKCIRVGMSREAV 240
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
S + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 70 SPGLTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGMCLVDKAHRNQCQ 129
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCLQ+ MN+DA+
Sbjct: 130 ACRLKKCLQMGMNKDAV 146
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 145 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 204
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 205 KCLVMGMKREAV 216
>gi|288906448|gb|ACY82385.1| PNHR-2 [Pristionchus pacificus]
Length = 439
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 51/73 (69%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+D LC VCGDKASG HY SC+GC+GFF+RSI R L Y CK G C +D+ R +CQ C
Sbjct: 74 LDELCLVCGDKASGYHYNALSCEGCKGFFRRSINRKLHYNCKASGQCQIDMYMRRKCQQC 133
Query: 120 RFSKCLQVKMNRD 132
R+ KCL+V M +
Sbjct: 134 RYDKCLRVGMRSE 146
>gi|195017101|ref|XP_001984538.1| GH14972 [Drosophila grimshawi]
gi|193898020|gb|EDV96886.1| GH14972 [Drosophila grimshawi]
Length = 904
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 56 GITSMD-VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
G++S V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN
Sbjct: 391 GVSSKSFVPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRN 450
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CRF KCL M+RD++
Sbjct: 451 RCQYCRFKKCLSAGMSRDSV 470
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 72 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKDCVINKHHRNRCQYCRLQ 131
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 132 RCIAFGMKQDSV 143
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 106 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQ 165
Query: 118 ACRFSKCLQVKMNRD 132
ACR KCLQ+ MN+D
Sbjct: 166 ACRLKKCLQMGMNKD 180
>gi|332105458|gb|AEE01362.1| ecdysone-induced protein 78c [Haliotis diversicolor]
Length = 469
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGD+ASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 95 VPCKVCGDRASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCMVIRLNRNRCQYCRF 154
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 155 KKCLAVGMSRDSV 167
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 99
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 100 KCLQAGMNQDAV 111
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 126 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLVMGMKREAV 197
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 131 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDSKDCMIDKRQRNRCQYCRYQ 190
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 191 KCLAMGMKREAV 202
>gi|297685666|ref|XP_002820404.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Pongo
abelii]
Length = 199
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 124 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 183
Query: 123 KCLQVKMNRDAM 134
KCL + M R+ M
Sbjct: 184 KCLAMGMKREGM 195
>gi|355568630|gb|EHH24911.1| V-erbA-related protein 1 [Macaca mulatta]
Length = 668
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 145 TKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 204
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 205 NRCQQCRFKKCLSVGMSRDAV 225
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 72 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKDCVINKHHRNRCQYCRLQ 131
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 132 RCIAFGMKQDSV 143
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 148 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTRDCVINKHHRNRCQYCRLQ 207
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 208 RCIAFGMKQDSV 219
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 65 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQ 124
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 125 KCLAMGMKREAV 136
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 122 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 182 KCLVMGMKREAV 193
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 66 VCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCL 125
VCGDKASG+HYG SC+GC+GFFKRS+R+NL Y C+ CI++ RN+CQ CR KCL
Sbjct: 119 VCGDKASGRHYGAVSCEGCKGFFKRSVRKNLTYSCRSSQDCIINKHHRNRCQFCRLKKCL 178
Query: 126 QVKMNRDAM 134
++ M +++
Sbjct: 179 EMGMKMESV 187
>gi|353230387|emb|CCD76558.1| RAR-like nuclear receptor [Schistosoma mansoni]
Length = 640
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGDKASG HYGV +C+GC+GFF+R+I+R+ Y C + G C ++ T RN+CQ CR
Sbjct: 266 MCVVCGDKASGFHYGVSTCEGCKGFFRRAIQRDQSYTCAKNGTCEINKTLRNKCQQCRLL 325
Query: 123 KCLQVKMNRDAM 134
KC+ V M+RDA+
Sbjct: 326 KCIAVGMSRDAV 337
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 76/121 (62%), Gaps = 14/121 (11%)
Query: 27 PGVSTMVKASLRTLLFISMSS---FFPVFVWTGITSMDV-----------LCKVCGDKAS 72
PG++ + S + + S+SS P+ GI +M+ +C +CGD++S
Sbjct: 80 PGINLVAPPSSQLNVVNSVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSS 139
Query: 73 GKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 132
GKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 140 GKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKRE 199
Query: 133 A 133
A
Sbjct: 200 A 200
>gi|256078223|ref|XP_002575396.1| RAR-like nuclear receptor [Schistosoma mansoni]
Length = 641
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGDKASG HYGV +C+GC+GFF+R+I+R+ Y C + G C ++ T RN+CQ CR
Sbjct: 266 MCVVCGDKASGFHYGVSTCEGCKGFFRRAIQRDQSYTCAKNGTCEINKTLRNKCQQCRLL 325
Query: 123 KCLQVKMNRDAM 134
KC+ V M+RDA+
Sbjct: 326 KCIAVGMSRDAV 337
>gi|5566124|gb|AAD45325.1|AF158102_1 retinoid-x-receptor [Schistosoma mansoni]
Length = 784
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++S +C +C D+ASGKHYGV SC+GC+GFFKR++R+ L Y+C++ C +D RN+C
Sbjct: 191 VSSGQYICSICSDRASGKHYGVFSCEGCKGFFKRTVRKELTYICRDSQECQIDKRLRNRC 250
Query: 117 QACRFSKCLQVKMNR 131
Q CR+ KCL+ M R
Sbjct: 251 QYCRYQKCLRAGMRR 265
>gi|47213822|emb|CAF95413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 42 ICTICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 101
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 102 KCLAMGMKREAV 113
>gi|358339638|dbj|GAA47660.1| hepatocyte nuclear factor 4 [Clonorchis sinensis]
Length = 533
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD+A+GKHYG SCDGC+GFF+RS+RRN Y C+ + C++ +RNQC+ CR K
Sbjct: 30 CLICGDRATGKHYGAYSCDGCKGFFRRSVRRNHSYTCRHKRACVITKDKRNQCRFCRLRK 89
Query: 124 CLQVKMNRDAM 134
C +V M + A+
Sbjct: 90 CFRVGMKKAAV 100
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 143 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDTKDCLIDKRQRNRCQYCRYQ 202
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 203 KCLAMGMKREAV 214
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 77 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 136
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 137 QCQYCRLKKCLKVGMRREAV 156
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQC 116
TS + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQC
Sbjct: 149 TSPALSCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGTGSCIVDKAHRNQC 208
Query: 117 QACRFSKCLQVKMNRDAM 134
QACR KCL MN+DA+
Sbjct: 209 QACRLKKCLSKGMNKDAV 226
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
+ ++ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 76 NQNIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRNQCQY 135
Query: 119 CRFSKCLQVKMNRDAM 134
CR KC+++ M R+A+
Sbjct: 136 CRLKKCMKMGMRREAV 151
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 37 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 96
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 97 KCLAMGMKREAV 108
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 37 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 96
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 97 KCLAMGMKREAV 108
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 37 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 96
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 97 QCQYCRLKKCLKVGMRREAV 116
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 37 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 96
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 97 KCLAMGMKREAV 108
>gi|327263925|ref|XP_003216767.1| PREDICTED: nuclear receptor subfamily 1 group D member 2-like,
partial [Anolis carolinensis]
Length = 576
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEY-VCKERGHCIVDVTRRNQCQA 118
M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N+ Y +C + +C++ RN+CQ
Sbjct: 129 MVLLCKVCGDIASGFHYGVHACEGCKGFFRRSIQQNINYKMCVKNENCMIMRMNRNRCQH 188
Query: 119 CRFSKCLQVKMNRDAM 134
CRF KCL V M+RDA+
Sbjct: 189 CRFKKCLAVGMSRDAV 204
>gi|297684595|ref|XP_002819914.1| PREDICTED: nuclear receptor ROR-beta [Pongo abelii]
Length = 464
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 148 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 207
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 208 KCLVMGMKREAV 219
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|195126627|ref|XP_002007772.1| GI13134 [Drosophila mojavensis]
gi|193919381|gb|EDW18248.1| GI13134 [Drosophila mojavensis]
Length = 569
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 77 VPCKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 136
Query: 122 SKCLQVKMNRDAM 134
KCL M+RD++
Sbjct: 137 KKCLSAGMSRDSV 149
>gi|39980009|gb|AAR32911.1| NR1 protein [Schistosoma mansoni]
Length = 715
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGDKASG HYGV +C+GC+GFF+R+I+R+ Y C + G C ++ T RN+CQ CR
Sbjct: 266 MCVVCGDKASGFHYGVSTCEGCKGFFRRAIQRDQSYTCAKNGTCEINKTLRNKCQQCRLL 325
Query: 123 KCLQVKMNRDAM 134
KC+ V M+RDA+
Sbjct: 326 KCIAVGMSRDAV 337
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C +D +RN+CQ CR+
Sbjct: 128 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECPIDKRQRNRCQYCRYQ 187
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 188 KCLAMGMKREAV 199
>gi|90660162|gb|ABD97342.1| RAR-like nuclear receptor [Schistosoma mansoni]
Length = 715
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGDKASG HYGV +C+GC+GFF+R+I+R+ Y C + G C ++ T RN+CQ CR
Sbjct: 266 MCVVCGDKASGFHYGVSTCEGCKGFFRRAIQRDQSYTCAKNGTCEINKTLRNKCQQCRLL 325
Query: 123 KCLQVKMNRDAM 134
KC+ V M+RDA+
Sbjct: 326 KCIAVGMSRDAV 337
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 106 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 165
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 166 KCLVMGMKREAV 177
>gi|350419474|ref|XP_003492193.1| PREDICTED: probable nuclear hormone receptor HR3-like [Bombus
impatiens]
Length = 512
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVL-CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRR 113
TG ++++ CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C +C+VD R
Sbjct: 51 TGTAQIEIIPCKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNR 110
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CR KCL++ M+RDA+
Sbjct: 111 NRCQYCRLQKCLRLGMSRDAV 131
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 99
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 100 KCLQAGMNQDAV 111
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|39653637|gb|AAR29357.1| NR1 protein [Schistosoma mansoni]
Length = 715
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGDKASG HYGV +C+GC+GFF+R+I+R+ Y C + G C ++ T RN+CQ CR
Sbjct: 266 MCVVCGDKASGFHYGVSTCEGCKGFFRRAIQRDQSYTCAKNGTCEINKTLRNKCQQCRLL 325
Query: 123 KCLQVKMNRDAM 134
KC+ V M+RDA+
Sbjct: 326 KCIAVGMSRDAV 337
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 126 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 185
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 186 KCLATGMKREAV 197
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 76 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 135
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 136 QCQYCRLKKCLKVGMRREAV 155
>gi|226316415|gb|ACO44671.1| retinoid X receptor isoform 4 [Crangon crangon]
Length = 225
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E C +D +RN+CQ CR+
Sbjct: 76 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACREDRACTIDKRQRNRCQYCRYQ 135
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 136 KCLGMGMKREAV 147
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 125 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 184
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 185 KCLATGMKREAV 196
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 117 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 176
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 177 KCLATGMKREAV 188
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 77 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 136
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 137 QCQYCRLKKCLKVGMRREAV 156
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C+VD RNQCQ
Sbjct: 100 TLGLTCVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGSCVVDKAHRNQCQ 159
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL + MN+DA+
Sbjct: 160 ACRLKKCLNMGMNKDAV 176
>gi|301617695|ref|XP_002938282.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Xenopus
(Silurana) tropicalis]
Length = 509
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R++L Y C+ C+++ RN+CQ CR K
Sbjct: 116 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSSQDCVINKHHRNRCQFCRLKK 175
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 176 CLEMGMKMESV 186
>gi|195027481|ref|XP_001986611.1| GH20426 [Drosophila grimshawi]
gi|193902611|gb|EDW01478.1| GH20426 [Drosophila grimshawi]
Length = 207
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQ 117
++ ++C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G CIVD RNQCQ
Sbjct: 94 NLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCIVDKAHRNQCQ 153
Query: 118 ACRFSKCLQVKMNRDAM 134
ACR KCL + MN+DA+
Sbjct: 154 ACRLKKCLLMGMNKDAV 170
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 146 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLFYTCRDSKDCLIDKRQRNRCQYCRYQ 205
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 206 KCLAMGMKREAV 217
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 1 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 60
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 61 QCQYCRLKKCLKVGMRREAV 80
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 153 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 212
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 213 KCLATGMKREAV 224
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 245 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 304
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 305 KCLATGMKREAV 316
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 74 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 133
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 134 QCQYCRLKKCLKVGMRREAV 153
>gi|119608531|gb|EAW88125.1| retinoid X receptor, alpha, isoform CRA_c [Homo sapiens]
Length = 249
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 134 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 193
Query: 123 KCLQVKMNRDA 133
KCL + M R+A
Sbjct: 194 KCLAMGMKREA 204
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 76 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 135
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 136 QCQYCRLKKCLKVGMRREAV 155
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 77 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 136
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 137 QCQYCRLKKCLKVGMRREAV 156
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 78 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 137
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 138 QCQYCRLKKCLKVGMRREAV 157
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 65 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 124
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 125 KCLATGMKREAV 136
>gi|308459615|ref|XP_003092124.1| CRE-SEX-1 protein [Caenorhabditis remanei]
gi|308254124|gb|EFO98076.1| CRE-SEX-1 protein [Caenorhabditis remanei]
Length = 518
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDKASG HYGV SC+GC+GFF+RSI+R ++Y C ++ C + RN+CQ CRF K
Sbjct: 148 CKVCGDKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQICEIRRDSRNRCQYCRFRK 207
Query: 124 CLQVKMNRDAM 134
C++ M++D++
Sbjct: 208 CVEAGMSKDSV 218
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 138 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 197
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 198 KCLVMGMKREAV 209
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 74 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 133
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 134 QCQYCRLKKCLKVGMRREAV 153
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG +C+GC+GFFKRSIR+NL Y C+ C+++ RN+CQ CR
Sbjct: 149 LCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTRDCVINKHHRNRCQYCRLQ 208
Query: 123 KCLQVKMNRDAM 134
+C+ M +D++
Sbjct: 209 RCIAFGMKQDSV 220
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 122 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 182 KCLATGMKREAV 193
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 53 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMIDKRQRNRCQYCRYQ 112
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 113 KCLAMGMKREAV 124
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 39 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRGLIYRCQVGVGMCPVDKAHRNQCQACRLK 98
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 99 KCLQAGMNQDAV 110
>gi|189532981|ref|XP_690743.3| PREDICTED: nuclear receptor ROR-beta [Danio rerio]
Length = 480
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|68132034|gb|AAY85283.1| RORgamma-B [Danio rerio]
Length = 480
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL + M+RDA+
Sbjct: 70 CLALGMSRDAV 80
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 79 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 138
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 139 KCLATGMKREAV 150
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 121 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYM 180
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 181 KCLAQGMKREAV 192
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/71 (52%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRS+R++L Y C+ C+++ RN+CQ CR K
Sbjct: 147 CVVCGDKASGRHYGAVSCEGCKGFFKRSVRKSLTYSCRSNQDCVINKHHRNRCQFCRLRK 206
Query: 124 CLQVKMNRDAM 134
CL++ M +++
Sbjct: 207 CLEMGMKMESV 217
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 142 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 201
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 202 KCLATGMKREAV 213
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 202 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 261
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 262 KCLATGMKREAV 273
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 52 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 111
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 112 QCQYCRLKKCLKVGMRREAV 131
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 122 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 182 KCLATGMKREAV 193
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 122 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 182 KCLATGMKREAV 193
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 149 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 208
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 209 KCLATGMKREAV 220
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 81 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 141 KCLATGMKREAV 152
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 81 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 141 KCLATGMKREAV 152
>gi|25012937|gb|AAN71555.1| RH29074p, partial [Drosophila melanogaster]
Length = 738
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/72 (50%), Positives = 54/72 (75%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+A+GKHYG S DGC+GFF+RS+R+N +Y C+ +C+VD +RNQC+ CR
Sbjct: 175 VCAICGDRATGKHYGASSFDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR 234
Query: 123 KCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 235 KCFKAGMKKEAV 246
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 81 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 140
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 141 KCLATGMKREAV 152
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 244 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 303
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 304 KCLATGMKREAV 315
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 110 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYM 169
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 170 KCLAQGMKREAV 181
>gi|260790073|ref|XP_002590068.1| hypothetical protein BRAFLDRAFT_123436 [Branchiostoma floridae]
gi|229275256|gb|EEN46079.1| hypothetical protein BRAFLDRAFT_123436 [Branchiostoma floridae]
Length = 2020
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 52/72 (72%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +C D+ASG HY V SC+GC+GFFKR++++NL Y CK GHC ++ RN CQ+CRF
Sbjct: 1668 FCLICNDRASGYHYSVYSCEGCKGFFKRTVQKNLSYKCKGEGHCEINKFTRNNCQSCRFQ 1727
Query: 123 KCLQVKMNRDAM 134
KC+ M ++A+
Sbjct: 1728 KCMDNGMKKEAV 1739
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDK+SGKHYGV +C+GC+ FFKRSIRR+L Y C+ +C VD+ RNQCQ CR K
Sbjct: 32 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRNQCQYCRLKK 91
Query: 124 CLQVKMNRDAM 134
CL+V M ++A+
Sbjct: 92 CLKVGMRKEAV 102
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 122 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 181
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 182 KCLATGMKREAV 193
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 119 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 178
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 179 KCLATGMKREAV 190
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 156 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 215
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 216 KCLATGMKREAV 227
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 60/80 (75%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G+ +C VCGD+ASGKHYGV SC+GC+GFFKR++R+ L Y C++ CI+D +RN
Sbjct: 160 SGVPLSKHICAVCGDRASGKHYGVYSCEGCKGFFKRTVRKYLTYTCRDDKDCIIDKRQRN 219
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR+ KC+ + M ++A+
Sbjct: 220 RCQYCRYQKCITMGMKKEAV 239
>gi|21310109|gb|AAM46150.1|AF378828_1 nuclear orphan receptor TR2/4 [Branchiostoma floridae]
Length = 511
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 56/80 (70%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G T LC VCGDKASG+HYG SC+GC+GFFKRSIR+NL YVC+ C ++ RN
Sbjct: 13 SGDTKPQELCVVCGDKASGRHYGAISCEGCKGFFKRSIRKNLGYVCRSSKECPINKHHRN 72
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CR KCL V M +++
Sbjct: 73 RCQYCRLQKCLSVGMRSESV 92
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 125 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 184
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 185 KCLAMGMKREAV 196
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 22 MLSQKRMCAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 81
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+ +
Sbjct: 82 QYCRYQKCLAMGMKREVV 99
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 129 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 188
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 189 KCLATGMKREAV 200
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C +D +RN+CQ CR+
Sbjct: 116 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQ 175
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 176 KCLAMGMKREAV 187
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 22 NFFILPGVSTMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSC 81
NFF + + AS S+++ G+ M C +CGD+A+GKHYG SC
Sbjct: 36 NFFQILDTEMTMAASNN-----SLTATLSSGSAAGVAQMSQHCAICGDRATGKHYGAASC 90
Query: 82 DGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134
DGC+GFF+RS+R+N Y C+ +CIVD +RNQC+ CR KC + M ++A+
Sbjct: 91 DGCKGFFRRSVRKNHLYTCRFSRNCIVDKDKRNQCRYCRLRKCFKAGMKKEAV 143
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 195 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 254
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 255 KCLATGMKREAV 266
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+ + ++ C +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ HC+VD +RN
Sbjct: 52 SAVAAVATWCAICGDRATGKHYGAASCDGCKGFFRRSVRKNHVYTCRFNRHCVVDKDKRN 111
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QC+ CR KC + M ++A+
Sbjct: 112 QCRYCRLGKCFKAGMKKEAV 131
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 57/71 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 121 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQYCRYM 180
Query: 123 KCLQVKMNRDA 133
KCL M R+A
Sbjct: 181 KCLAQGMKREA 191
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 176 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 235
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 236 KCLATGMKREAV 247
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 189 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 248
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 249 KCLATGMKREAV 260
>gi|344275336|ref|XP_003409468.1| PREDICTED: bile acid receptor-like [Loxodonta africana]
Length = 466
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/88 (47%), Positives = 55/88 (62%)
Query: 42 FISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK 101
+ + F P++ I + LC VCGDKASG HY +C+GC+GFF+RSI +N Y CK
Sbjct: 99 YSGIKRFRPIYSSMRIKGQEELCAVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYSCK 158
Query: 102 ERGHCIVDVTRRNQCQACRFSKCLQVKM 129
GHC +D+ R +CQACR KC V M
Sbjct: 159 NGGHCEMDMYMRRKCQACRLKKCKAVGM 186
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 99
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 100 KCLQAGMNQDAV 111
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 100 VCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLVYTCRDSKDCLIDKRQRNRCQYCRYQ 159
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 160 KCLVMGMKREAV 171
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 191 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 250
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 251 KCLATGMKREAV 262
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 14 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 73
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 74 KCLATGMKREAV 85
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 39 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 98
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 99 KCLQAGMNQDAV 110
>gi|47199347|emb|CAF88861.1| unnamed protein product [Tetraodon nigroviridis]
Length = 154
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S +C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C+VD +RN+C
Sbjct: 36 MMSQKRMCVICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECLVDKRQRNRC 95
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 96 QYCRYQKCLAMGMKREAV 113
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C +D +RN+CQ CR+
Sbjct: 116 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDNKDCQIDKRQRNRCQYCRYQ 175
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 176 KCLAMGMKREAV 187
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 191 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 250
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 251 KCLATGMKREAV 262
>gi|345322078|ref|XP_001509616.2| PREDICTED: retinoic acid receptor RXR-like [Ornithorhynchus
anatinus]
Length = 203
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACR 120
++CKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 97 LMCKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGMCPVDKAHRNQCQACR 156
Query: 121 FSKCLQVKMNRDA 133
KCLQ MN+DA
Sbjct: 157 LRKCLQAGMNKDA 169
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 205 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 264
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 265 KCLATGMKREAV 276
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|312370914|gb|EFR19214.1| hypothetical protein AND_22872 [Anopheles darlingi]
Length = 307
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 54/71 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDKASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 180 VACKVCGDKASGYHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRF 239
Query: 122 SKCLQVKMNRD 132
KCL V M+RD
Sbjct: 240 KKCLSVGMSRD 250
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 57/80 (71%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 78 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 137
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+A+
Sbjct: 138 QCQYCRLKKCLKVGMRREAV 157
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 54/74 (72%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
S + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 63 SQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQY 122
Query: 119 CRFSKCLQVKMNRD 132
CRF KCL+V M R+
Sbjct: 123 CRFKKCLKVGMRRE 136
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 268 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 327
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 328 KCLATGMKREAV 339
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C +D +RN+CQ CR+
Sbjct: 82 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKECPIDKRQRNRCQYCRYQ 141
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 142 KCLAMGMKREAV 153
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
S + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 71 SQQIECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQY 130
Query: 119 CRFSKCLQVKMNRDAM 134
CR KCL+V M R+A+
Sbjct: 131 CRLKKCLKVGMRREAV 146
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 14 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 73
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 74 KCLATGMKREAV 85
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 146 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 205
Query: 123 KCLQVKMNRD 132
KCL + M R+
Sbjct: 206 KCLAMGMKRE 215
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 208 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 267
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 268 KCLATGMKREAV 279
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+C+ CR+
Sbjct: 125 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCKYCRYQ 184
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 185 KCLAMGMKREAV 196
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 196 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 255
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 256 KCLATGMKREAV 267
>gi|442623145|ref|NP_001260854.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
gi|440214256|gb|AGB93387.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
Length = 529
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|28573920|ref|NP_788301.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
gi|28380972|gb|AAO41453.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
Length = 694
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 260 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 319
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 320 CLKLGMSRDAV 330
>gi|20151433|gb|AAM11076.1| GH21112p [Drosophila melanogaster]
gi|220947174|gb|ACL86130.1| Hr46-PB [synthetic construct]
gi|220952516|gb|ACL88801.1| Hr46-PB [synthetic construct]
Length = 444
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 10 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 69
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 70 CLKLGMSRDAV 80
>gi|28573924|ref|NP_788303.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|386767645|ref|NP_001246236.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
gi|195475280|ref|XP_002089912.1| GE21721 [Drosophila yakuba]
gi|399369|sp|P31396.1|HR3_DROME RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|157230|gb|AAA28461.1| DHR3 [Drosophila melanogaster]
gi|7303778|gb|AAF58826.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|194176013|gb|EDW89624.1| GE21721 [Drosophila yakuba]
gi|373251236|gb|AEY64286.1| FI17818p1 [Drosophila melanogaster]
gi|383302381|gb|AFH07991.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
Length = 487
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 15 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 74
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 75 KCLVMGMKREAV 86
>gi|320543744|ref|NP_788302.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
gi|318068560|gb|AAO41454.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
Length = 874
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 440 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 499
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 500 CLKLGMSRDAV 510
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 15 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 74
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 75 KCLVMGMKREAV 86
>gi|218505955|gb|ABN49269.2| IP15960p [Drosophila melanogaster]
Length = 487
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|195442298|ref|XP_002068895.1| GK18019 [Drosophila willistoni]
gi|194164980|gb|EDW79881.1| GK18019 [Drosophila willistoni]
Length = 524
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 53 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 112
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 113 CLKLGMSRDAV 123
>gi|195383602|ref|XP_002050515.1| GJ20161 [Drosophila virilis]
gi|194145312|gb|EDW61708.1| GJ20161 [Drosophila virilis]
Length = 487
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|195120906|ref|XP_002004962.1| GI20211 [Drosophila mojavensis]
gi|193910030|gb|EDW08897.1| GI20211 [Drosophila mojavensis]
Length = 487
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|195028616|ref|XP_001987172.1| GH20117 [Drosophila grimshawi]
gi|193903172|gb|EDW02039.1| GH20117 [Drosophila grimshawi]
Length = 487
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|194858004|ref|XP_001969081.1| GG25225 [Drosophila erecta]
gi|190660948|gb|EDV58140.1| GG25225 [Drosophila erecta]
Length = 702
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 266 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 325
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 326 CLKLGMSRDAV 336
>gi|161076500|ref|NP_001097256.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
gi|157400270|gb|ABV53751.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
Length = 456
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 22 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 81
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 82 CLKLGMSRDAV 92
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 186 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 245
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 246 KCLATGMKREAV 257
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|194753930|ref|XP_001959258.1| GF12134 [Drosophila ananassae]
gi|190620556|gb|EDV36080.1| GF12134 [Drosophila ananassae]
Length = 448
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 51 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 110
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 111 CLKLGMSRDAV 121
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C++D +RN+CQ CR+
Sbjct: 15 ICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQ 74
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 75 KCLVMGMKREAV 86
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 202 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 261
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 262 KCLATGMKREAV 273
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|47216868|emb|CAG11675.1| unnamed protein product [Tetraodon nigroviridis]
Length = 436
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+C
Sbjct: 93 MLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRC 152
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 153 QYCRYQKCLAMGMKREAV 170
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 207 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 266
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 267 KCLATGMKREAV 278
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/79 (55%), Positives = 55/79 (69%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G + V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQ
Sbjct: 12 GRPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQ 71
Query: 116 CQACRFSKCLQVKMNRDAM 134
CQ CR KC +V M ++A+
Sbjct: 72 CQYCRLKKCFRVGMRKEAV 90
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+C
Sbjct: 120 MLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRC 179
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 180 QYCRYQKCLAMGMKREAV 197
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 148 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 207
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 208 KCLATGMKREAV 219
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 185 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 244
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 245 KCLATGMKREAV 256
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C VD RNQCQ CR
Sbjct: 52 VECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPVDQHHRNQCQYCRL 111
Query: 122 SKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 112 KKCLKVGMRREAV 124
>gi|38492974|pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+C
Sbjct: 4 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRC 63
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL M R+A+
Sbjct: 64 QYCRYQKCLTCGMKREAV 81
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 59/78 (75%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
+ S LC +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C VD +RN+C
Sbjct: 86 MLSQKRLCCICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCTVDKRQRNRC 145
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL + M R+A+
Sbjct: 146 QYCRYQKCLAMGMKREAV 163
>gi|72148318|ref|XP_795547.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 483
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 52/73 (71%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGDK+ GKHYGV CDGC FFKRSIRRN+ Y C +G+C+VD RRN C CR
Sbjct: 9 VPCKVCGDKSYGKHYGVYCCDGCSCFFKRSIRRNMRYTCIGKGNCLVDKARRNWCPYCRL 68
Query: 122 SKCLQVKMNRDAM 134
KC V MN+ A+
Sbjct: 69 KKCFAVNMNKSAV 81
>gi|409194682|gb|AFV31631.1| retinoid X receptor alpha, partial [Acanthopagrus schlegelii]
Length = 196
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 3 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCVIDKRQRNRCQYCRYQ 62
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 63 KCLAMGMKREAV 74
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 126 ICSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDCKECLIDKRQRNRCQYCRYQ 185
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 186 KCLAMGMKREAV 197
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RN
Sbjct: 22 SGQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRN 81
Query: 115 QCQACRFSKCLQVKMNRDAM 134
QCQ CR KCL+V M R+ +
Sbjct: 82 QCQYCRLKKCLKVGMRREGL 101
>gi|312380833|gb|EFR26722.1| hypothetical protein AND_06978 [Anopheles darlingi]
Length = 832
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 55 TGITSMDV-LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRR 113
T + SM + LC VCGD+ASG+HYG SC+GC+GFFKRSIR+ L Y C+ +C V R
Sbjct: 87 TQLNSMSIELCLVCGDRASGRHYGAISCEGCKGFFKRSIRKQLGYQCRGSMNCEVTKHHR 146
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CR KCL M D++
Sbjct: 147 NRCQYCRLQKCLACGMRSDSV 167
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
V CKVCGD+ASG HYGV SC+GC+GFF+RSI++ +EY C G C+V RN+CQ CRF
Sbjct: 814 VPCKVCGDRASGFHYGVTSCEGCKGFFRRSIQKQIEYRCLRDGKCMVIRLSRNRCQYCRF 873
Query: 122 SKCLQVKMNRDAM 134
KCL V M+RD++
Sbjct: 874 KKCLAVGMSRDSV 886
>gi|112820331|gb|ABI24019.1| retinoid X receptor beta [Sus scrofa]
Length = 484
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 203 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 262
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 263 KCLATGMKREAV 274
>gi|149241919|pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+C
Sbjct: 6 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRC 65
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL M R+A+
Sbjct: 66 QYCRYQKCLTCGMKREAV 83
>gi|47229684|emb|CAG06880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + N Y C + +C++D T RN+CQ CR K
Sbjct: 10 CKICGDKSSGIHYGVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQK 69
Query: 124 CLQVKMNRD 132
CL + M+RD
Sbjct: 70 CLALGMSRD 78
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/71 (56%), Positives = 50/71 (70%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGDKASG+HYG SC+GC+GFFKRSIR+ L Y C+ C V+ RN+CQ CR K
Sbjct: 179 CVVCGDKASGRHYGCTSCEGCKGFFKRSIRKQLGYACRGNKDCPVNKPHRNRCQYCRLQK 238
Query: 124 CLQVKMNRDAM 134
CL V M +++
Sbjct: 239 CLAVGMRAESV 249
>gi|307194605|gb|EFN76894.1| Retinoic acid receptor RXR-alpha-A [Harpegnathos saltator]
Length = 389
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+
Sbjct: 92 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQ 151
Query: 123 KCL 125
KCL
Sbjct: 152 KCL 154
>gi|114049537|emb|CAJ90622.1| HR3 isoform B1 [Blattella germanica]
Length = 651
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C +C+VD RN+CQ CR K
Sbjct: 82 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQK 141
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 142 CLRLGMSRDAV 152
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 99
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 100 KCLQAGMNQDAV 111
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 57/71 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C++ +C++D +RN+CQ CR+
Sbjct: 119 ICAICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRDDKNCMIDKRQRNRCQFCRYM 178
Query: 123 KCLQVKMNRDA 133
KCL M R+A
Sbjct: 179 KCLAQGMKREA 189
>gi|221043202|dbj|BAH13278.1| unnamed protein product [Homo sapiens]
Length = 382
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 204 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 263
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 264 KCLATGMKREAV 275
>gi|149041874|gb|EDL95715.1| rCG58152 [Rattus norvegicus]
Length = 240
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCK-ERGHCIVDVTRRNQCQACRFS 122
C+VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C VD RNQCQACR
Sbjct: 40 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK 99
Query: 123 KCLQVKMNRDAM 134
KCLQ MN+DA+
Sbjct: 100 KCLQAGMNQDAV 111
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR+ R++L Y C++ C++D +RN+CQ CR+
Sbjct: 46 ICAICGDRSSGKHYGVYSCEGCKGFFKRTARKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 105
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 106 KCLAMGMKREAV 117
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQCQACRFS 122
CKVCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G C +D RNQCQACR
Sbjct: 10 CKVCGDTSSGKHYGIYACNGCSGFFKRSVRRKLIYRCQAGTGMCTIDKAHRNQCQACRLK 69
Query: 123 KCLQVKMNRDAM 134
KCL MN+DA+
Sbjct: 70 KCLAAGMNKDAV 81
>gi|453232782|ref|NP_001263953.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
gi|403411176|emb|CCM09421.1| Protein FAX-1, isoform b [Caenorhabditis elegans]
Length = 390
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQC 116
+S + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G+C+VD RNQC
Sbjct: 96 SSPTLCCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGTGNCVVDKAHRNQC 155
Query: 117 QACRFSKCLQVKMNRDAM 134
QACR KCL MN+DA+
Sbjct: 156 QACRLKKCLNKGMNKDAV 173
>gi|184186086|ref|NP_001116968.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|68566021|sp|Q26622.1|SHR2_STRPU RecName: Full=Orphan steroid hormone receptor 2; AltName:
Full=SpSHR2
gi|1054912|gb|AAB19174.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|167859078|gb|ACA04474.1| Shr2 [Strongylocentrotus purpuratus]
Length = 583
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGDKASG+HYG SC+GC+GFFKRSIR++L Y C+ C + RN+CQ CR
Sbjct: 86 LCAVCGDKASGRHYGAISCEGCKGFFKRSIRKHLGYTCRGNKDCQIIKHNRNRCQYCRLQ 145
Query: 123 KCLQVKMNRDAM 134
KCL + M D++
Sbjct: 146 KCLDMGMKSDSV 157
>gi|313219082|emb|CBY43294.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 15 GRKNTQINFFILPGVSTMVKASLRTLLFISMSSFFPVFVWT----GITSMDVLCKVCGDK 70
G+ N ++ I+P S ++ SM P+ + G + +C VC D+
Sbjct: 53 GQNNQNMSSNIIPQASPPNNVDVKMEADGSMDVKRPLRTSSRSSVGGLEGNRMCVVCQDR 112
Query: 71 ASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 130
ASGKHYGV SC+GC+GFFKR++R+NL+Y C++ C +D +RN+CQ CR+ KCL M
Sbjct: 113 ASGKHYGVFSCEGCKGFFKRTVRKNLKYTCRDEKSCTIDKRQRNRCQYCRYQKCLLAGMK 172
Query: 131 RDAM 134
++A+
Sbjct: 173 KEAV 176
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
+ + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C VD RNQCQ
Sbjct: 92 NQQIECIVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPVDQHHRNQCQY 151
Query: 119 CRFSKCLQVKMNRDAM 134
CR KCL+V M R+A+
Sbjct: 152 CRLKKCLKVGMRREAV 167
>gi|114049539|emb|CAJ90623.1| HR3 isoform B2 [Blattella germanica]
Length = 566
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C +C+VD RN+CQ CR K
Sbjct: 82 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQK 141
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 142 CLRLGMSRDAV 152
>gi|378705838|gb|AFC34771.1| RORalpha1 [Ctenopharyngodon idella]
Length = 474
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CK+CGDK+SG HYGV +C+GC+GFF+RS + + Y C + C++D T RN+CQ CR K
Sbjct: 17 CKICGDKSSGIHYGVITCEGCKGFFRRSQQGTVSYSCPRQKSCLIDRTSRNRCQHCRLQK 76
Query: 124 CLQVKMNRDAM 134
CL V M+RDA+
Sbjct: 77 CLAVGMSRDAV 87
>gi|154434695|gb|ABS82445.1| nuclear receptor 7 [Pocillopora damicornis]
Length = 168
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 58/85 (68%)
Query: 50 PVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVD 109
PV + V C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C+ +C +D
Sbjct: 16 PVEEPSEKNVQQVECAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLSYTCRASRNCPID 75
Query: 110 VTRRNQCQACRFSKCLQVKMNRDAM 134
RNQCQ CR KC++V M R+A+
Sbjct: 76 QHHRNQCQYCRLRKCIKVGMRREAV 100
>gi|195582120|ref|XP_002080876.1| GD26001 [Drosophila simulans]
gi|194192885|gb|EDX06461.1| GD26001 [Drosophila simulans]
Length = 627
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 51/71 (71%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C C+VD RN+CQ CR K
Sbjct: 436 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQK 495
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 496 CLKLGMSRDAV 506
>gi|147223295|emb|CAN13297.1| retinoid X receptor, beta [Sus scrofa]
Length = 388
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC +CGD++SGKHYGV SC+GC+GFFKR+IR++L Y C++ C VD +RN+CQ CR+
Sbjct: 107 LCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRNRCQYCRYQ 166
Query: 123 KCLQVKMNRDAM 134
KCL M R+A+
Sbjct: 167 KCLATGMKREAV 178
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRL 136
Query: 122 SKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 137 KKCLKVGMRREAV 149
>gi|17568335|ref|NP_508547.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
gi|5881165|gb|AAD55066.1|AF176087_1 nuclear hormone receptor FAX-1 [Caenorhabditis elegans]
gi|351057992|emb|CCD64596.1| Protein FAX-1, isoform a [Caenorhabditis elegans]
Length = 419
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 58 TSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKE-RGHCIVDVTRRNQC 116
+S + C VCGD +SGKHYG+ +C+GC GFFKRS+RR L Y C+ G+C+VD RNQC
Sbjct: 96 SSPTLCCAVCGDVSSGKHYGILACNGCSGFFKRSVRRRLIYRCQAGTGNCVVDKAHRNQC 155
Query: 117 QACRFSKCLQVKMNRDAM 134
QACR KCL MN+DA+
Sbjct: 156 QACRLKKCLNKGMNKDAV 173
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRL 136
Query: 122 SKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 137 KKCLKVGMRREAV 149
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 74 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRL 133
Query: 122 SKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 134 KKCLKVGMRREAV 146
>gi|297269916|ref|XP_001118265.2| PREDICTED: retinoic acid receptor RXR-alpha, partial [Macaca
mulatta]
Length = 277
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 124 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 183
Query: 123 KCLQVKMNRD 132
KCL + M R+
Sbjct: 184 KCLAMGMKRE 193
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 54/73 (73%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
+ C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ CR
Sbjct: 77 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRL 136
Query: 122 SKCLQVKMNRDAM 134
KCL+V M R+A+
Sbjct: 137 KKCLKVGMRREAV 149
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 54/75 (72%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQAC 119
+ V C VCGDK+SGKHYGV +C+GC+ FFKRSIRRNL Y C+ C +D RNQCQ C
Sbjct: 25 LQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRDCQIDQHHRNQCQYC 84
Query: 120 RFSKCLQVKMNRDAM 134
R KC +V M ++A+
Sbjct: 85 RLKKCFRVGMRKEAV 99
>gi|114049535|emb|CAJ90621.1| HR3 isoform A [Blattella germanica]
Length = 607
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
CKVCGDK+SG HYGV +C+GC+GFF+RS + Y C +C+VD RN+CQ CR K
Sbjct: 38 CKVCGDKSSGVHYGVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQK 97
Query: 124 CLQVKMNRDAM 134
CL++ M+RDA+
Sbjct: 98 CLRLGMSRDAV 108
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.329 0.140 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,987,759,840
Number of Sequences: 23463169
Number of extensions: 69242986
Number of successful extensions: 183380
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7575
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 173505
Number of HSP's gapped (non-prelim): 7918
length of query: 134
length of database: 8,064,228,071
effective HSP length: 99
effective length of query: 35
effective length of database: 10,036,341,636
effective search space: 351271957260
effective search space used: 351271957260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 71 (32.0 bits)