BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9231
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 139 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 198
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 199 KCLAMGMKREAV 210
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+C
Sbjct: 4 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRC 63
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL M R+A+
Sbjct: 64 QYCRYQKCLTCGMKREAV 81
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 60/78 (76%)
Query: 57 ITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQC 116
++ LC +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E +CI+D +RN+C
Sbjct: 6 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRC 65
Query: 117 QACRFSKCLQVKMNRDAM 134
Q CR+ KCL M R+A+
Sbjct: 66 QYCRYQKCLTCGMKREAV 83
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 99
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 5 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 64
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 65 KCLAMGMKREAV 76
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 5 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 64
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 65 KCLAMGMKREAV 76
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of The
Rxr On Dna
Length = 82
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 7 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 66
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 67 KCLAMGMKREAV 78
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 58/72 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 7 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 66
Query: 123 KCLQVKMNRDAM 134
KCL + M R+A+
Sbjct: 67 KCLAMGMKREAV 78
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 55/76 (72%)
Query: 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQA 118
S + C VCGDK+SGKHYG +C+GC+ FFKRS+RRNL Y C+ +C +D RNQCQ
Sbjct: 5 SSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQY 64
Query: 119 CRFSKCLQVKMNRDAM 134
CR KCL+V M R+A+
Sbjct: 65 CRLKKCLKVGMRREAV 80
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 92.8 bits (229), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 57/72 (79%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 5 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 64
Query: 123 KCLQVKMNRDAM 134
K L + M R+A+
Sbjct: 65 KALAMGMKREAV 76
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRF 121
LC +CGD+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+VD +RNQC+ CR
Sbjct: 1 ALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRL 60
Query: 122 SKCLQVKMNRDAM 134
KC + M ++A+
Sbjct: 61 KKCFRAGMKKEAV 73
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRR 113
T + M +LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + R
Sbjct: 1 TKLNGMVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINR 60
Query: 114 NQCQACRFSKCLQVKMNRDAM 134
N+CQ CRF KCL V M+RDA+
Sbjct: 61 NRCQQCRFKKCLSVGMSRDAV 81
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 66
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 53/66 (80%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+ K
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQK 60
Query: 124 CLQVKM 129
CL + M
Sbjct: 61 CLAMGM 66
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 89.0 bits (219), Expect = 8e-19, Method: Composition-based stats.
Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 5/77 (6%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERG--HCIVDVTRRNQCQ 117
M + C+VCGDKASG HYGV +C+GC+GFF+R+IR L Y +R +C + RN+CQ
Sbjct: 49 MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIY---DRCDLNCRIHKKSRNKCQ 105
Query: 118 ACRFSKCLQVKMNRDAM 134
CRF KCL V M+ +A+
Sbjct: 106 YCRFQKCLAVGMSHNAI 122
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element Dna
Length = 103
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLE--YVCKERGHCIVDVTRRNQCQA 118
D LC VCGDKA+G HY +C+GC+GFF+R+I++NL Y CK G C++D RNQCQ
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 60
Query: 119 CRFSKCLQVKMNRD 132
CRF KC+ V M D
Sbjct: 61 CRFKKCIYVGMATD 74
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLE--YVCKERGHCIVDVTRRNQCQA 118
D LC VCGDKA+G HY +C+GC+GFF+R+I+++L Y CK G CI+D RNQCQ
Sbjct: 3 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQE 62
Query: 119 CRFSKCLQVKMNRD 132
CRF KC+ V M D
Sbjct: 63 CRFKKCIYVGMATD 76
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQ 115
G ++ LC VCGDK SG HYG+ +C+ C+GFFKR+++ N Y C E +C +D T+R +
Sbjct: 4 GDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKR 63
Query: 116 CQACRFSKCLQVKMNRDAM 134
C CRF KCL V M +A+
Sbjct: 64 CPYCRFQKCLSVGMKLEAV 82
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C+GC+ FFKR++ Y+CK G CI+D RR C ACR+ K
Sbjct: 7 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 66
Query: 124 CLQVKMNRDA 133
CLQ MN +A
Sbjct: 67 CLQAGMNLEA 76
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
D LC VCGDK SG HYG+ +C+ C+GFFKR+++ N Y C E C +D T+R +C CR
Sbjct: 1 DELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCR 60
Query: 121 FSKCLQVKMNRDAM 134
F KCL V M +A+
Sbjct: 61 FQKCLTVGMRLEAV 74
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain From
Human Peroxisome Proliferator-Activated Receptor Delta
Length = 88
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 55 TGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRN 114
+G + M+ C+VCGDKASG HYGV +C+GC+GFF+R+IR LEY ER C + RN
Sbjct: 3 SGSSGME--CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYEKCER-SCKIQKKNRN 59
Query: 115 QCQACRFSKCLQVKMNRDAM 134
+CQ CRF KCL + M+ +A+
Sbjct: 60 KCQYCRFQKCLALGMSHNAI 79
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer In
Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC DK+SG HYGV +C+GC+GFF+RSI++N+ Y C +CI++ RN+CQ CR K
Sbjct: 7 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 66
Query: 124 CLQVKMNRDAM 134
C +V M+++++
Sbjct: 67 CFEVGMSKESV 77
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 53/71 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC DK+SG HYGV +C+GC+GFF+RSI++N+ Y C +C+++ RN+CQ CR K
Sbjct: 8 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRCQYCRLQK 67
Query: 124 CLQVKMNRDAM 134
C +V M+++++
Sbjct: 68 CFEVGMSKESV 78
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGD AS +HYGV +C+GC+GFFKR+++++ +Y+C C VD RRN+CQ CRF K
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 124 CLQVKMNRDAM 134
CL V M ++ +
Sbjct: 63 CLAVGMVKEVV 73
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex
With Dna
Length = 98
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD ASG HYGV SC+ C+ FFKR+I+ N+EY C C + RR CQACRF
Sbjct: 6 LCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFM 65
Query: 123 KCLQVKMNRDAM 134
K L+V M ++ +
Sbjct: 66 KALKVGMLKEGV 77
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 30 STMVKASLRTLLFISMSSFFPVFVWTGITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFK 89
S+ V L F S +S P LC VC D+ASG HYGV +C C+ FFK
Sbjct: 8 SSGVDLGTENLYFQSNASNAP----------PKLCLVCSDEASGCHYGVLTCGSCKVFFK 57
Query: 90 RSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDA 133
R++ Y+C R CI+D RR C ACR+ KCLQ MN +A
Sbjct: 58 RAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEA 101
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C VC D ASG HYGV SC+GC+ FFKRSI+ + +Y+C C +D RR CQACR
Sbjct: 3 YCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLR 62
Query: 123 KCLQVKM 129
KC +V M
Sbjct: 63 KCYEVGM 69
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C VC D ASG HYGV SC+GC+ FFKRSI+ + +Y+C C +D RR CQACR
Sbjct: 6 YCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLR 65
Query: 123 KCLQVKM 129
KC +V M
Sbjct: 66 KCYEVGM 72
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C VC D ASG HYGV SC+GC+ FFKRSI+ + +Y+C C +D RR CQACR
Sbjct: 3 YCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLR 62
Query: 123 KCLQVKM 129
KC +V M
Sbjct: 63 KCYEVGM 69
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 123 KCLQVKMNRDA 133
KCLQ MN +A
Sbjct: 61 KCLQAGMNLEA 71
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid Receptor
Dna-Binding Domain
Length = 72
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 46/71 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 123 KCLQVKMNRDA 133
KCLQ MN +A
Sbjct: 61 KCLQAGMNLEA 71
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor Dna-Binding
Domain Bound To Dna: How Receptors Discriminate Between
Their Response Elements
Length = 84
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 44/67 (65%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C VC D ASG HYGV SC+GC+ FFKRSI+ + +Y+C C +D RR CQACR
Sbjct: 6 YCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLR 65
Query: 123 KCLQVKM 129
KC +V M
Sbjct: 66 KCYEVGM 72
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 63
Query: 123 KCLQVKMNRDA 133
KCLQ MN +A
Sbjct: 64 KCLQAGMNLEA 74
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 45/71 (63%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VC D+ASG HYGV +C C+ FFKR++ Y+C CI+D RR C ACR+
Sbjct: 28 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGDNRCIIDKIRRKNCPACRYR 87
Query: 123 KCLQVKMNRDA 133
KCLQ MN +A
Sbjct: 88 KCLQAGMNLEA 98
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+ K
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 124 CLQVKMNRDA 133
CLQ MN +A
Sbjct: 67 CLQAGMNLEA 76
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+ K
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 124 CLQVKMNRDA 133
CLQ MN +A
Sbjct: 67 CLQAGMNLEA 76
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+ K
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 60
Query: 124 CLQVKMNRDA 133
CLQ MN +A
Sbjct: 61 CLQAGMNLEA 70
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C C+ FFKR++ Y+C R CI+D RR C ACR+ K
Sbjct: 7 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 66
Query: 124 CLQVKMNRDA 133
CLQ MN +A
Sbjct: 67 CLQAGMNLEA 76
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIR-RNLEYVCKERGHCIVDVTRRNQCQACRF 121
+C VC D+ASG HYGV +C C+ FFKR++ R Y+C R CI+D RR C ACR+
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRY 63
Query: 122 SKCLQVKMNRDA 133
KCLQ MN +A
Sbjct: 64 RKCLQAGMNLEA 75
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LC VCGD+ASG HY +C+GC+GFF+RS+ ++ Y CK C +D+ R +CQ CR
Sbjct: 6 EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR 65
Query: 121 FSKCLQVKM 129
KCL V M
Sbjct: 66 LKKCLAVGM 74
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACR 120
+ LC VCGD+ASG HY +C+GC+GFF+RS+ ++ Y CK C +D+ R +CQ CR
Sbjct: 8 EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR 67
Query: 121 FSKCLQVKM 129
KCL V M
Sbjct: 68 LKKCLAVGM 76
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 42/67 (62%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD+ASG HYGV +C C+ FFKR++ Y+C R CIVD RR C ACR
Sbjct: 4 ICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACRLR 63
Query: 123 KCLQVKM 129
KC Q M
Sbjct: 64 KCCQAGM 70
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis Retinoic
Acid Receptor Dna-Binding Domains Bound To A Dr3
Response Element
Length = 110
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGD+A+G H+ +C+GC+GFF+RS++R + C G C + R CQACR
Sbjct: 8 ICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRLK 67
Query: 123 KCLQVKMNRD 132
+C+ + M ++
Sbjct: 68 RCVDIGMMKE 77
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGD+A+G H+ +C+GC+GFF+RS++R + C G C + R CQACR
Sbjct: 8 ICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLK 67
Query: 123 KCLQVKMNRD 132
+C+ + M ++
Sbjct: 68 RCVDIGMMKE 77
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding Domain
Bound To A Direct Repeat Response Element
Length = 105
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C +CGD+ASG HYG +C C+ FFKR+ +Y+C R C +D RR C +CR K
Sbjct: 10 CLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRK 69
Query: 124 CLQVKM 129
C + M
Sbjct: 70 CYEAGM 75
>pdb|1XPA|A Chain A, Solution Structure Of The Dna-And Rpa-Binding Domain Of
The Human Repair Factor Xpa, Nmr, 1 Structure
Length = 122
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 62 VLCKVCG----DKASGKHYGVPSCDGCRG 86
V+C+ CG D H+ +P+CD CR
Sbjct: 6 VICEECGKEFMDSYLMNHFDLPTCDNCRD 34
>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein
Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n
Nmr Relaxation Studies
Length = 111
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 62 VLCKVCG----DKASGKHYGVPSCDGCRG 86
V+C+ CG D H+ +P+CD CR
Sbjct: 6 VICEECGKEFMDSYLMDHFDLPTCDDCRD 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,758,479
Number of Sequences: 62578
Number of extensions: 129646
Number of successful extensions: 398
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 48
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)