Query psy9231
Match_columns 134
No_of_seqs 190 out of 1200
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:15:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebl_A COUP transcription fact 100.0 4.5E-32 1.5E-36 185.0 -2.0 75 60-134 6-80 (89)
2 3cbb_A HNF-4-alpha, hepatocyte 100.0 7.6E-32 2.6E-36 179.8 -1.3 72 63-134 2-73 (78)
3 1dsz_B RXR-alpha, retinoic aci 100.0 7.4E-32 2.5E-36 182.5 -1.9 75 60-134 4-78 (85)
4 1hcq_A Protein (estrogen recep 100.0 1.4E-31 4.8E-36 180.8 -0.7 75 60-134 3-77 (84)
5 2han_A Protein ultraspiracle; 100.0 1E-31 3.5E-36 184.5 -2.3 75 60-134 9-83 (93)
6 1ynw_B Retinoic acid receptor 100.0 3.7E-31 1.3E-35 183.6 0.1 74 61-134 3-76 (99)
7 1dsz_A RAR-alpha, retinoic aci 100.0 2.1E-31 7.2E-36 180.6 -1.8 74 61-134 4-77 (86)
8 1cit_A NGFI-B, protein (orphan 100.0 3.2E-31 1.1E-35 180.8 -1.5 72 63-134 2-73 (89)
9 1a6y_A Orphan nuclear receptor 100.0 4.7E-31 1.6E-35 181.6 -1.4 75 60-134 6-81 (94)
10 4hn5_A Glucocorticoid receptor 100.0 9.4E-31 3.2E-35 186.4 -0.8 74 61-134 29-102 (117)
11 1kb2_A Vitamin D3 receptor; VD 100.0 1.5E-30 5.2E-35 183.6 -1.3 74 61-134 6-79 (110)
12 3g9m_A Glucocorticoid receptor 100.0 8.1E-31 2.8E-35 179.0 -2.7 73 62-134 3-75 (90)
13 1r4i_A Androgen receptor; AR, 100.0 1.7E-30 5.9E-35 182.0 -1.4 75 60-134 6-80 (105)
14 2a66_A Orphan nuclear receptor 100.0 1E-30 3.5E-35 185.2 -2.6 75 60-134 8-82 (113)
15 2nll_B Protein (thyroid hormon 100.0 2.2E-30 7.5E-35 180.9 -1.0 73 62-134 2-76 (103)
16 2han_B Ecdysone receptor; tran 100.0 2.1E-30 7.2E-35 185.1 -1.6 75 60-134 7-81 (119)
17 1lo1_A Steroid hormone recepto 100.0 4.5E-31 1.5E-35 182.9 -5.3 74 61-134 4-77 (98)
18 3dzy_A Retinoic acid receptor 99.9 4.4E-28 1.5E-32 205.6 -1.8 74 61-134 137-210 (467)
19 3dzy_D Peroxisome proliferator 99.9 2.3E-26 8E-31 192.5 -0.8 73 60-134 49-122 (419)
20 2lze_A A primordial catalytic 99.8 1.1E-20 3.8E-25 128.0 2.2 62 70-133 13-74 (87)
21 2yt5_A Metal-response element- 49.7 7.2 0.00025 23.4 1.5 30 59-88 4-33 (66)
22 2yql_A PHD finger protein 21A; 48.1 11 0.00037 22.0 2.1 30 56-90 4-33 (56)
23 1we9_A PHD finger family prote 42.5 8.1 0.00028 23.0 0.9 30 60-90 5-34 (64)
24 2ku3_A Bromodomain-containing 41.7 12 0.00041 23.3 1.6 53 60-123 15-67 (71)
25 2l43_A N-teminal domain from h 33.9 19 0.00066 23.1 1.7 52 60-122 24-75 (88)
26 2lri_C Autoimmune regulator; Z 31.9 22 0.00075 21.7 1.7 24 61-89 12-35 (66)
27 2k16_A Transcription initiatio 31.7 23 0.00078 21.6 1.8 28 61-90 18-45 (75)
28 3dfx_A Trans-acting T-cell-spe 31.5 5.3 0.00018 24.7 -1.3 32 60-91 6-41 (63)
29 1xwh_A Autoimmune regulator; P 30.5 28 0.00096 20.9 2.0 25 60-89 7-31 (66)
30 1weo_A Cellulose synthase, cat 27.4 33 0.0011 22.7 2.0 23 61-85 16-42 (93)
31 1gnf_A Transcription factor GA 26.0 7.3 0.00025 22.5 -1.3 30 61-90 4-37 (46)
32 2puy_A PHD finger protein 21A; 25.1 32 0.0011 20.1 1.5 50 60-123 4-53 (60)
33 1mm2_A MI2-beta; PHD, zinc fin 24.7 37 0.0013 20.1 1.7 25 60-89 8-32 (61)
34 2vut_I AREA, nitrogen regulato 23.5 5.2 0.00018 22.8 -2.2 28 63-90 3-34 (43)
35 2kae_A GATA-type transcription 22.9 10 0.00036 23.8 -1.1 31 60-91 7-43 (71)
36 2vpb_A Hpygo1, pygopus homolog 22.9 19 0.00066 21.9 0.2 31 60-91 7-38 (65)
37 3j21_e 50S ribosomal protein L 22.8 30 0.001 21.3 1.0 24 60-85 16-39 (62)
38 3o36_A Transcription intermedi 22.4 36 0.0012 24.3 1.6 24 61-89 4-27 (184)
39 1fp0_A KAP-1 corepressor; PHD 21.3 55 0.0019 21.2 2.2 24 60-88 24-47 (88)
No 1
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.96 E-value=4.5e-32 Score=184.97 Aligned_cols=75 Identities=56% Similarity=1.179 Sum_probs=70.9
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
.+..|.|||++++|+||||++|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 80 (89)
T 2ebl_A 6 SGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV 80 (89)
T ss_dssp SSCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHH
T ss_pred CCCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHc
Confidence 456799999999999999999999999999999999999999999999999999999999999999999998765
No 2
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.6e-32 Score=179.80 Aligned_cols=72 Identities=53% Similarity=1.252 Sum_probs=69.7
Q ss_pred cceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 63 ~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
+|.|||++++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 73 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAV 73 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGC
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHc
Confidence 599999999999999999999999999999999999999999999999999999999999999999999987
No 3
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.96 E-value=7.4e-32 Score=182.49 Aligned_cols=75 Identities=51% Similarity=1.256 Sum_probs=71.3
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
....|.|||++++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|
T Consensus 4 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 78 (85)
T 1dsz_B 4 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 78 (85)
T ss_dssp CCEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHh
Confidence 355799999999999999999999999999999999999999999999999999999999999999999999886
No 4
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.96 E-value=1.4e-31 Score=180.78 Aligned_cols=75 Identities=48% Similarity=1.025 Sum_probs=68.9
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...+|.|||++++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 3 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (84)
T 1hcq_A 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGI 77 (84)
T ss_dssp CCCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC---
T ss_pred CCCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHh
Confidence 345799999999999999999999999999999999999999999999999999999999999999999999986
No 5
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.96 E-value=1e-31 Score=184.51 Aligned_cols=75 Identities=56% Similarity=1.273 Sum_probs=70.9
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...+|.||||.++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|
T Consensus 9 ~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 83 (93)
T 2han_A 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAV 83 (93)
T ss_dssp -CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGS
T ss_pred CCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHh
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999886
No 6
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.96 E-value=3.7e-31 Score=183.62 Aligned_cols=74 Identities=51% Similarity=1.276 Sum_probs=69.9
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...|.|||+.++|+||||.+|+||++||||++..+..|.|+.+++|.|++..|+.|++|||+|||++||++++|
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 76 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 76 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTC
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999987
No 7
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.96 E-value=2.1e-31 Score=180.61 Aligned_cols=74 Identities=47% Similarity=1.115 Sum_probs=69.7
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|+...|+.|++|||+|||++||++++|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESV 77 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999886
No 8
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.96 E-value=3.2e-31 Score=180.78 Aligned_cols=72 Identities=51% Similarity=1.168 Sum_probs=69.5
Q ss_pred cceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 63 ~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
.|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 73 (89)
T 1cit_A 2 RCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVV 73 (89)
T ss_dssp CCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred CCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHe
Confidence 699999999999999999999999999999999899999999999999999999999999999999999876
No 9
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.96 E-value=4.7e-31 Score=181.55 Aligned_cols=75 Identities=57% Similarity=1.195 Sum_probs=69.9
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCccc-ceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEY-VCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~-~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
+..+|.||||.++|+||||.+|+||++||||++..+..| .|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 81 (94)
T 1a6y_A 6 MVLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAV 81 (94)
T ss_dssp --CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTC
T ss_pred CCCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHh
Confidence 456799999999999999999999999999999998888 599999999999999999999999999999999987
No 10
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.95 E-value=9.4e-31 Score=186.39 Aligned_cols=74 Identities=50% Similarity=1.051 Sum_probs=69.9
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
..+|.||||.++|+||||.+|++|++||||++..+..|.|..+++|.|++..|..|++|||+|||++||+++||
T Consensus 29 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~av 102 (117)
T 4hn5_A 29 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR 102 (117)
T ss_dssp -CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC-
T ss_pred CCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999987
No 11
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.95 E-value=1.5e-30 Score=183.57 Aligned_cols=74 Identities=38% Similarity=1.022 Sum_probs=70.2
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...|.|||+.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v 79 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFI 79 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999876
No 12
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.95 E-value=8.1e-31 Score=179.02 Aligned_cols=73 Identities=49% Similarity=1.061 Sum_probs=70.1
Q ss_pred ccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 62 ~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
.+|.|||+.++|+||||.+|++|++||||++..+..|.|..+++|.|+...|..|++|||+|||++||+++||
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~av 75 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEAR 75 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHH
T ss_pred CcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHh
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999875
No 13
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.95 E-value=1.7e-30 Score=181.96 Aligned_cols=75 Identities=40% Similarity=0.927 Sum_probs=70.4
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
....|.|||+.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 6 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~ 80 (105)
T 1r4i_A 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGAR 80 (105)
T ss_dssp CCCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-
T ss_pred CCCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchh
Confidence 355799999999999999999999999999999999999999999999999999999999999999999999875
No 14
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.95 E-value=1e-30 Score=185.23 Aligned_cols=75 Identities=49% Similarity=1.124 Sum_probs=70.4
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
....|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|+...|+.|++|||+|||++||++++|
T Consensus 8 ~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~v 82 (113)
T 2a66_A 8 LEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAV 82 (113)
T ss_dssp --CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGS
T ss_pred CCCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHh
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999876
No 15
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.95 E-value=2.2e-30 Score=180.88 Aligned_cols=73 Identities=55% Similarity=1.207 Sum_probs=69.2
Q ss_pred ccceEcCcCCCceeecCccCcCCCceeeeeEecCc--ccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL--EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 62 ~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~--~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
..|.|||+.++|+||||.+|+||++||||++..+. .|.|..+++|.|+...|..|++|||+|||++||++++|
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 76 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 76 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGS
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHh
Confidence 57999999999999999999999999999998875 78999999999999999999999999999999999886
No 16
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.95 E-value=2.1e-30 Score=185.12 Aligned_cols=75 Identities=45% Similarity=1.023 Sum_probs=71.2
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
....|.|||+.++|+||||.+|+||++||||++..+..|.|..+++|.|+...|+.|++|||+|||++||++++|
T Consensus 7 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 81 (119)
T 2han_B 7 QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 81 (119)
T ss_dssp CSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGS
T ss_pred CCCcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHc
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999876
No 17
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.95 E-value=4.5e-31 Score=182.89 Aligned_cols=74 Identities=51% Similarity=1.063 Sum_probs=70.4
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
..+|.||||.++|+||||.+|+||++||||++..+..|.|..+++|.|++..|+.|++|||+|||++||++++|
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 77 (98)
T 1lo1_A 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGV 77 (98)
T ss_dssp CCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGS
T ss_pred CCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHe
Confidence 45799999999999999999999999999999999999999999999998888999999999999999999876
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.93 E-value=4.4e-28 Score=205.56 Aligned_cols=74 Identities=51% Similarity=1.276 Sum_probs=70.7
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
...|.||||+++|+||||.+|+|||+||||++.++..|.|+.+++|.+++..|++||+|||+||+++||++++|
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v 210 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAV 210 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGC
T ss_pred CCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999876
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.91 E-value=2.3e-26 Score=192.46 Aligned_cols=73 Identities=55% Similarity=1.165 Sum_probs=66.5
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccc-eecCCceeecCCCCCCCcchhhHHHHHccCCCCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYV-CKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDAM 134 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~-C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~aV 134 (134)
....|.|||+.++|+||||.+|+|||+||||++.++..|. | .++|.+++..|+.|++|||+||+++||++++|
T Consensus 49 ~~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v 122 (419)
T 3dzy_D 49 MAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAI 122 (419)
T ss_dssp -CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGC
T ss_pred CCCcCeECCCcCCCCccCcccchhhhHHHccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchhhe
Confidence 3557999999999999999999999999999999888775 6 46899999999999999999999999999876
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.80 E-value=1.1e-20 Score=128.01 Aligned_cols=62 Identities=23% Similarity=0.425 Sum_probs=53.1
Q ss_pred CCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHHHHHccCCCCC
Q psy9231 70 KASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDA 133 (134)
Q Consensus 70 ~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~KCl~vGM~~~a 133 (134)
+..+.||+++ |.+|++||||+ .++..|.|+.+++|.|++..|++|++|||+|||+|||+...
T Consensus 13 p~~g~h~c~v-Cgd~asfFRRt-~~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~ 74 (87)
T 2lze_A 13 PRGGKHICAI-CGNNAEDYKHT-DMDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHH 74 (87)
T ss_dssp CSCCSSSCSS-SSSSSSSCTTT-TTSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCC
T ss_pred CCCCCEEccC-CCCccceECcc-cCCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEecc
Confidence 3445666664 77799999998 46778999999999999999999999999999999998764
No 21
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=49.69 E-value=7.2 Score=23.38 Aligned_cols=30 Identities=20% Similarity=0.502 Sum_probs=20.3
Q ss_pred cCCccceEcCcCCCceeecCccCcCCCcee
Q psy9231 59 SMDVLCKVCGDKASGKHYGVPSCDGCRGFF 88 (134)
Q Consensus 59 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FF 88 (134)
.....|.||++..+.-.-..+.|.+|...|
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~ 33 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGY 33 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHH
Confidence 345679999987433223456799998665
No 22
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.09 E-value=11 Score=22.02 Aligned_cols=30 Identities=23% Similarity=0.666 Sum_probs=21.2
Q ss_pred ccccCCccceEcCcCCCceeecCccCcCCCceeee
Q psy9231 56 GITSMDVLCKVCGDKASGKHYGVPSCDGCRGFFKR 90 (134)
Q Consensus 56 ~~~~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrR 90 (134)
+....+..|.||++.. ..+.|..|...|.-
T Consensus 4 g~~~~~~~C~vC~~~g-----~ll~Cd~C~~~~H~ 33 (56)
T 2yql_A 4 GSSGHEDFCSVCRKSG-----QLLMCDTCSRVYHL 33 (56)
T ss_dssp CCCSSCCSCSSSCCSS-----CCEECSSSSCEECS
T ss_pred CcCCCCCCCccCCCCC-----eEEEcCCCCcceEC
Confidence 3344566799999853 46789999876643
No 23
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.46 E-value=8.1 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=20.1
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeee
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKR 90 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrR 90 (134)
....|.+|+.+..... -.+.|..|...|.-
T Consensus 5 e~~~C~~C~~~~~~~~-~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 5 SSGQCGACGESYAADE-FWICCDLCEMWFHG 34 (64)
T ss_dssp SCCCCSSSCCCCCSSS-CEEECSSSCCEEET
T ss_pred CCCCCCCCCCccCCCC-CEEEccCCCCCCCc
Confidence 4556999998753211 24579999888754
No 24
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.65 E-value=12 Score=23.26 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=31.5
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHH
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~K 123 (134)
....|.||++..+...-..+.|.+|...|--. |-.-.. + ......|+.|+.++
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~--------Cl~~~~--v-P~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY--I-PEGQWLCRHCLQSR 67 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHH--------HHTCSS--C-CSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccc--------cCCCCc--C-CCCCcCCccCcCcC
Confidence 45679999987533333457899998665322 322211 1 22356888887654
No 25
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.86 E-value=19 Score=23.12 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=31.5
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhH
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~ 122 (134)
.+..|.||++..+...-..+.|.+|...|.- .|-.-.. .......|+.|+..
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~--------~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQ--------ECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCH--------HHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhc--------ccCCCCc---cCCCceECccccCc
Confidence 3557999998764333356789999866532 2422221 12245688888765
No 26
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.90 E-value=22 Score=21.66 Aligned_cols=24 Identities=38% Similarity=0.865 Sum_probs=17.9
Q ss_pred CccceEcCcCCCceeecCccCcCCCceee
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFK 89 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFr 89 (134)
...|.||++... .+.|..|...|.
T Consensus 12 ~~~C~vC~~~~~-----ll~Cd~C~~~~H 35 (66)
T 2lri_C 12 GARCGVCGDGTD-----VLRCTHCAAAFH 35 (66)
T ss_dssp TCCCTTTSCCTT-----CEECSSSCCEEC
T ss_pred CCCcCCCCCCCe-----EEECCCCCCcee
Confidence 346999998653 678999986663
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=31.75 E-value=23 Score=21.63 Aligned_cols=28 Identities=21% Similarity=0.665 Sum_probs=19.9
Q ss_pred CccceEcCcCCCceeecCccCcCCCceeee
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKR 90 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFrR 90 (134)
...|.||+....+. ..+.|..|...|.-
T Consensus 18 ~~~C~~C~~~~~~~--~mi~CD~C~~wfH~ 45 (75)
T 2k16_A 18 IWICPGCNKPDDGS--PMIGCDDCDDWYHW 45 (75)
T ss_dssp EECBTTTTBCCSSC--CEEECSSSSSEEEH
T ss_pred CcCCCCCCCCCCCC--CEEEcCCCCccccc
Confidence 34699999886532 24789999987743
No 28
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=31.52 E-value=5.3 Score=24.68 Aligned_cols=32 Identities=22% Similarity=0.605 Sum_probs=22.8
Q ss_pred CCccceEcCcCCCc----eeecCccCcCCCceeeee
Q psy9231 60 MDVLCKVCGDKASG----KHYGVPSCDGCRGFFKRS 91 (134)
Q Consensus 60 ~~~~C~VCg~~a~g----~hyGv~sC~aCk~FFrRt 91 (134)
....|..|+...+- -.+|...|+||..+|+..
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 34569999876541 235778899999998653
No 29
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=30.50 E-value=28 Score=20.88 Aligned_cols=25 Identities=36% Similarity=0.801 Sum_probs=18.7
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceee
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFK 89 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFr 89 (134)
.+..|.||++.. ..+.|.+|...|.
T Consensus 7 ~~~~C~vC~~~g-----~ll~CD~C~~~fH 31 (66)
T 1xwh_A 7 NEDECAVCRDGG-----ELICCDGCPRAFH 31 (66)
T ss_dssp CCCSBSSSSCCS-----SCEECSSCCCEEC
T ss_pred CCCCCccCCCCC-----CEEEcCCCChhhc
Confidence 456799999853 4678999987663
No 30
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.36 E-value=33 Score=22.71 Aligned_cols=23 Identities=30% Similarity=1.058 Sum_probs=14.2
Q ss_pred CccceEcCcCC----CceeecCccCcCCC
Q psy9231 61 DVLCKVCGDKA----SGKHYGVPSCDGCR 85 (134)
Q Consensus 61 ~~~C~VCg~~a----~g~hyGv~sC~aCk 85 (134)
..+|+||||.. .|--| .+|+.|.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~F--VAC~eC~ 42 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLF--VACNECG 42 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBC--CSCSSSC
T ss_pred CCccccccCccccCCCCCEE--EeeeccC
Confidence 45799999862 33323 3566665
No 31
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=26.00 E-value=7.3 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=19.1
Q ss_pred CccceEcCcCCCc----eeecCccCcCCCceeee
Q psy9231 61 DVLCKVCGDKASG----KHYGVPSCDGCRGFFKR 90 (134)
Q Consensus 61 ~~~C~VCg~~a~g----~hyGv~sC~aCk~FFrR 90 (134)
...|..|+...+- -..|...|+||..+|+.
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKM 37 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHH
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHH
Confidence 3457778765431 12456789999887754
No 32
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.13 E-value=32 Score=20.10 Aligned_cols=50 Identities=18% Similarity=0.462 Sum_probs=29.3
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceeeeeEecCcccceecCCceeecCCCCCCCcchhhHH
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFrRtv~~~~~~~C~~~~~C~i~~~~r~~Cr~CRf~K 123 (134)
.+..|.||++.. ..+.|..|...|.-. |.....=.+ ......|+.|+-+.
T Consensus 4 ~~~~C~vC~~~g-----~ll~Cd~C~~~fH~~--------Cl~ppl~~~-p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSG-----QLLMCDTCSRVYHLD--------CLDPPLKTI-PKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCS-----SCEECSSSSCEECGG--------GSSSCCSSC-CCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCC-----cEEEcCCCCcCEECC--------cCCCCcCCC-CCCceEChhccChh
Confidence 345799999853 467899998766432 432110001 12346788887654
No 33
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.67 E-value=37 Score=20.07 Aligned_cols=25 Identities=28% Similarity=0.743 Sum_probs=18.4
Q ss_pred CCccceEcCcCCCceeecCccCcCCCceee
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFFK 89 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFr 89 (134)
....|.||++.. ..+.|.+|...|.
T Consensus 8 ~~~~C~vC~~~g-----~ll~Cd~C~~~fH 32 (61)
T 1mm2_A 8 HMEFCRVCKDGG-----ELLCCDTCPSSYH 32 (61)
T ss_dssp SCSSCTTTCCCS-----SCBCCSSSCCCBC
T ss_pred CCCcCCCCCCCC-----CEEEcCCCCHHHc
Confidence 456799999743 4678999986653
No 34
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=23.47 E-value=5.2 Score=22.77 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=17.3
Q ss_pred cceEcCcCCCc----eeecCccCcCCCceeee
Q psy9231 63 LCKVCGDKASG----KHYGVPSCDGCRGFFKR 90 (134)
Q Consensus 63 ~C~VCg~~a~g----~hyGv~sC~aCk~FFrR 90 (134)
.|..|+...+- --.|...|+||..+|+.
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 46677664431 12466679999887654
No 35
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=22.95 E-value=10 Score=23.85 Aligned_cols=31 Identities=16% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCccceEcCcCCC-c-----eeecCccCcCCCceeeee
Q psy9231 60 MDVLCKVCGDKAS-G-----KHYGVPSCDGCRGFFKRS 91 (134)
Q Consensus 60 ~~~~C~VCg~~a~-g-----~hyGv~sC~aCk~FFrRt 91 (134)
....|..|+...+ . ..-| ..|+||..+|+..
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 3456999987643 1 1234 6899999998643
No 36
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.86 E-value=19 Score=21.87 Aligned_cols=31 Identities=19% Similarity=0.619 Sum_probs=21.2
Q ss_pred CCccceEcCcCCCceeecCccCc-CCCceeeee
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCD-GCRGFFKRS 91 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~-aCk~FFrRt 91 (134)
...+|.+|+++...-. ....|. .|..+|.+.
T Consensus 7 ~~~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~ 38 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQ-DAILCEASCQKWFHRI 38 (65)
T ss_dssp --CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHH
T ss_pred CcCcCccCCCccCCCC-CeEecccCccccCchh
Confidence 3457999999854322 235798 999999775
No 37
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.79 E-value=30 Score=21.26 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=20.4
Q ss_pred CCccceEcCcCCCceeecCccCcCCC
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCR 85 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk 85 (134)
.+.+|..||..+ ||..-..|.+|.
T Consensus 16 tH~lCrRCG~~s--yH~qK~~Ca~CG 39 (62)
T 3j21_e 16 THIRCRRCGRVS--YNVKKGYCAACG 39 (62)
T ss_dssp CCCBCSSSCSBC--EETTTTEETTTC
T ss_pred ceeeecccCcch--hccccccccccC
Confidence 567899999875 888888999997
No 38
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.38 E-value=36 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.775 Sum_probs=18.0
Q ss_pred CccceEcCcCCCceeecCccCcCCCceee
Q psy9231 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFK 89 (134)
Q Consensus 61 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFr 89 (134)
+..|.||++... .+.|.+|..-|.
T Consensus 4 ~~~C~~C~~~g~-----ll~Cd~C~~~~H 27 (184)
T 3o36_A 4 EDWCAVCQNGGE-----LLCCEKCPKVFH 27 (184)
T ss_dssp CSSCTTTCCCSS-----CEECSSSSCEEC
T ss_pred CCccccCCCCCe-----eeecCCCCcccC
Confidence 456999997643 678999986654
No 39
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.31 E-value=55 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.749 Sum_probs=18.6
Q ss_pred CCccceEcCcCCCceeecCccCcCCCcee
Q psy9231 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFF 88 (134)
Q Consensus 60 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FF 88 (134)
....|.||++.. ..+.|..|-..|
T Consensus 24 n~~~C~vC~~~g-----~LL~CD~C~~~f 47 (88)
T 1fp0_A 24 SATICRVCQKPG-----DLVMCNQCEFCF 47 (88)
T ss_dssp SSSCCSSSCSSS-----CCEECTTSSCEE
T ss_pred CCCcCcCcCCCC-----CEEECCCCCCce
Confidence 455799999864 477899997665
Done!