RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9231
(134 letters)
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 91.6 bits (227), Expect = 4e-26
Identities = 38/71 (53%), Positives = 57/71 (80%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C +CGD++SGKHYGV SC+GC+GFFKR++R++L Y C++ C++D +RN+CQ CR+
Sbjct: 7 ICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQ 66
Query: 123 KCLQVKMNRDA 133
KCL + M R+A
Sbjct: 67 KCLAMGMKREA 77
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 88.9 bits (220), Expect = 6e-25
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
+C VCGD+A+G H+ +C+GC+GFF+RS++R + C G C + R CQACR
Sbjct: 2 ICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLK 61
Query: 123 KCLQVKMNRDAM 134
+C+ + M ++ +
Sbjct: 62 RCVDIGMMKEFI 73
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 88.5 bits (219), Expect = 7e-25
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD+ASG HY +C+GC+GFF+RS+ ++ Y CK C +D+ R +CQ CR
Sbjct: 2 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 61
Query: 123 KCLQVKMNRDA 133
KCL V M +
Sbjct: 62 KCLAVGMRPEC 72
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 87.0 bits (215), Expect = 3e-24
Identities = 38/71 (53%), Positives = 47/71 (66%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
LC VCGD ASG HYGV SC+ C+ FFKR+I+ N+EY C C + RR CQACRF
Sbjct: 6 LCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFM 65
Query: 123 KCLQVKMNRDA 133
K L+V M ++
Sbjct: 66 KALKVGMLKEG 76
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 85.9 bits (212), Expect = 5e-24
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C +CGD+ASG HYG +C C+ FFKR+ +Y+C R C +D RR C +CR
Sbjct: 4 TCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLR 63
Query: 123 KCLQVKMNRDA 133
KC + M A
Sbjct: 64 KCYEAGMTLGA 74
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 84.7 bits (209), Expect = 2e-23
Identities = 37/70 (52%), Positives = 51/70 (72%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VCGD AS +HYGV +C+GC+GFFKR+++++ +Y+C C VD RRN+CQ CRF K
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 124 CLQVKMNRDA 133
CL V M ++
Sbjct: 63 CLAVGMVKEV 72
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 84.0 bits (207), Expect = 3e-23
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC D+ASG HYGV +C+GC+ FFKR++ Y+CK G CI+D RR C ACR+ K
Sbjct: 3 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRK 62
Query: 124 CLQVKMNRD 132
CLQ MN +
Sbjct: 63 CLQAGMNLE 71
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 83.5 bits (206), Expect = 6e-23
Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 62 VLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEY-VCKERGHCIVDVTRRNQCQACR 120
+LCKVCGD ASG HYGV +C+GC+GFF+RSI++N++Y C + +C + RN+CQ CR
Sbjct: 1 LLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCR 60
Query: 121 FSKCLQVKMNRDA 133
F KCL V M+RDA
Sbjct: 61 FKKCLSVGMSRDA 73
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 83.2 bits (205), Expect = 7e-23
Identities = 35/70 (50%), Positives = 52/70 (74%)
Query: 64 CKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSK 123
C VC DK+SG HYGV +C+GC+GFF+RSI++N+ Y C +CI++ RN+CQ CR K
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 61
Query: 124 CLQVKMNRDA 133
C +V M++++
Sbjct: 62 CFEVGMSKES 71
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 81.3 bits (200), Expect = 3e-22
Identities = 36/69 (52%), Positives = 45/69 (65%)
Query: 63 LCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFS 122
C VC D ASG HYGV SC+GC+ FFKRSI+ + +Y+C C +D RR CQACR
Sbjct: 6 YCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLR 65
Query: 123 KCLQVKMNR 131
KC +V M +
Sbjct: 66 KCYEVGMMK 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 80.6 bits (198), Expect = 2e-21
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 61 DVLCKVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKER--GHCIVDVTRRNQCQA 118
D LC VCGDKA+G HY +C+GC+GFF+R+I++NL + G C++D RNQCQ
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 60
Query: 119 CRFSKCLQVKMNRDAM 134
CRF KC+ V M D +
Sbjct: 61 CRFKKCIYVGMATDLV 76
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 26.3 bits (57), Expect = 0.53
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 60 MDVLCKVCGDKASGKHYGVPSCDGCRGFF 88
M + C VC + C C +
Sbjct: 15 MGLACVVCRQMTVASGNQLVECQECHNLY 43
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 274
Score = 26.0 bits (57), Expect = 1.6
Identities = 4/31 (12%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 11 TIDHGRKNTQINFFILPGVSTMVKASLRTLL 41
+ H + + ++P V +A+ ++
Sbjct: 243 SQAHKQNGDSYGYMLIPNVD---RATFNQMI 270
>d1f1sa4 b.30.5.2 (A:620-911) Hyaluronate lyase {Streptococcus
agalactiae [TaxId: 1311]}
Length = 292
Score = 26.1 bits (57), Expect = 1.6
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 11 TIDHGRKNTQINFFILPGVS 30
+ H K + ++P +
Sbjct: 262 SQKHDNKGDSYGYMMVPNID 281
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus
subtilis [TaxId: 1423]}
Length = 114
Score = 23.4 bits (50), Expect = 7.8
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 76 YGVPSCDGCRGFFKRSIRRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQ 126
Y PSC CR + +V + + + Q +
Sbjct: 5 YTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDE 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.140 0.455
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,512
Number of extensions: 22549
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 23
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.8 bits)