BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9232
(119 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 80.5 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/42 (80%), Positives = 35/42 (83%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNLEYVCKE G CIVDVTRRNQCQACRF KCLQV M RD +
Sbjct: 47 RNLEYVCKENGRCIVDVTRRNQCQACRFKKCLQVNMKRDAVQ 88
>gi|158302179|ref|XP_321796.4| AGAP001348-PA [Anopheles gambiae str. PEST]
gi|157012826|gb|EAA01088.4| AGAP001348-PA [Anopheles gambiae str. PEST]
Length = 430
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RNLEYVCKE G C+VDV+RRNQCQACRF+KCLQ M R+
Sbjct: 55 RNLEYVCKEGGKCVVDVSRRNQCQACRFAKCLQANMRRE 93
>gi|312371094|gb|EFR19357.1| hypothetical protein AND_22643 [Anopheles darlingi]
Length = 486
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNLEYVCKE G C+VDV+RRNQCQACRF+KCLQ M R+ +
Sbjct: 39 RNLEYVCKEGGKCVVDVSRRNQCQACRFAKCLQANMRREAVQ 80
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 36/42 (85%)
Query: 18 FVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+ RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 42 YARNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 83
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 34/40 (85%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNLEYVCKE G CIVDVTRRNQCQACRF KCLQV M RD
Sbjct: 44 RNLEYVCKENGRCIVDVTRRNQCQACRFKKCLQVNMKRDA 83
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 35/42 (83%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL+YVCKE G C+VDV RRNQCQACRF KCLQV MNRD +
Sbjct: 45 RNLDYVCKENGQCVVDVARRNQCQACRFKKCLQVNMNRDAVQ 86
>gi|357612132|gb|EHJ67823.1| putative PNR-like protein [Danaus plexippus]
Length = 431
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL+Y+CKE G CIVDV+RRNQCQACRFSKCL+V M +D +
Sbjct: 39 RNLDYICKENGSCIVDVSRRNQCQACRFSKCLRVNMKKDAVQ 80
>gi|156556067|emb|CAO79103.1| PNR-like [Aedes aegypti]
gi|403182930|gb|EAT40209.2| AAEL008043-PA [Aedes aegypti]
Length = 422
Score = 74.7 bits (182), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNLEYVCKE G C+VDV+RRNQCQACRF+KCLQ M R+ +
Sbjct: 46 RNLEYVCKEGGKCVVDVSRRNQCQACRFAKCLQANMRREAVQ 87
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 42 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 81
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+YVCKE G CIVDV+RRNQCQACRF+KCLQV M RD
Sbjct: 41 RNLDYVCKENGRCIVDVSRRNQCQACRFTKCLQVNMKRDA 80
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 36/40 (90%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+LEYVCKE G+C+VDV RRNQCQACRF KCL++KMNRD
Sbjct: 173 RSLEYVCKENGNCVVDVARRNQCQACRFRKCLEMKMNRDA 212
>gi|157117589|ref|XP_001658840.1| nuclear receptor [Aedes aegypti]
Length = 314
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNLEYVCKE G C+VDV+RRNQCQACRF+KCLQ M R+ +
Sbjct: 46 RNLEYVCKEGGKCVVDVSRRNQCQACRFAKCLQANMRREAVQ 87
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/40 (77%), Positives = 35/40 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL YVCKE +CIVDVTRRNQCQACRF KCL+V+MN+D
Sbjct: 53 RNLAYVCKENNNCIVDVTRRNQCQACRFKKCLEVRMNKDA 92
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL+YVCKE C+VDV+RRNQCQACRF KCLQV M RD +
Sbjct: 41 RNLDYVCKENSQCVVDVSRRNQCQACRFRKCLQVNMKRDAVQ 82
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 33/42 (78%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y+CKE G C+VDV RRNQCQACRF KCL +MN+D R
Sbjct: 33 RNLAYICKENGSCVVDVARRNQCQACRFKKCLDAQMNKDGFR 74
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL+Y+CKE CIVDV+RRNQCQACRF +CL+VKM RD
Sbjct: 41 RNLDYMCKESNQCIVDVSRRNQCQACRFRRCLEVKMKRDA 80
>gi|170065989|ref|XP_001868086.1| nuclear receptor [Culex quinquefasciatus]
gi|167862692|gb|EDS26075.1| nuclear receptor [Culex quinquefasciatus]
Length = 155
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/39 (76%), Positives = 34/39 (87%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RNLEYVCKE G CIVDV+RRNQCQACRF+KC+Q M R+
Sbjct: 86 RNLEYVCKEGGKCIVDVSRRNQCQACRFAKCIQANMRRE 124
>gi|392898442|ref|NP_500190.3| Protein NHR-236 [Caenorhabditis elegans]
gi|351059122|emb|CCD66972.1| Protein NHR-236 [Caenorhabditis elegans]
Length = 283
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT---RLG 63
RNL Y CKE G C++DVTRRNQCQACRF KC+ V MNR RLG
Sbjct: 43 RNLRYSCKESGDCVIDVTRRNQCQACRFQKCITVAMNRHAVQHERLG 89
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 32/40 (80%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RNL YVC++ G CIV+V RRNQCQACR+ KCL V MNRD
Sbjct: 226 RNLAYVCRDGGRCIVNVPRRNQCQACRYRKCLAVNMNRDA 265
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL ++CKE G+C VDV RRNQCQACR KC V MNRD +
Sbjct: 54 RNLLFLCKENGNCQVDVARRNQCQACRLRKCYDVHMNRDAVQ 95
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 32/42 (76%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y CKE G C+VDV RRNQCQACR KC +V+MN+D +
Sbjct: 31 RNLTYHCKELGKCVVDVARRNQCQACRLKKCFEVQMNKDAVQ 72
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 10 GVVSC-------QFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV+SC + R L Y CKE CIVDVTRRNQCQACRF KCL V M RD +
Sbjct: 22 GVISCDGCRGFFKRSIRRGLAYHCKESNSCIVDVTRRNQCQACRFKKCLSVNMKRDAVQ 80
>gi|339238869|ref|XP_003380989.1| zinc finger protein [Trichinella spiralis]
gi|316976049|gb|EFV59394.1| zinc finger protein [Trichinella spiralis]
Length = 562
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 30/42 (71%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y CK C+VDV RRNQCQACR KCLQVKMNR +
Sbjct: 144 RNLTYQCKSNDDCVVDVARRNQCQACRLKKCLQVKMNRHAVQ 185
>gi|341892635|gb|EGT48570.1| CBN-NHR-236 protein [Caenorhabditis brenneri]
Length = 284
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT---RLG 63
RNL Y CKE C+VDV RRNQCQACRF KCL V MNR RLG
Sbjct: 42 RNLRYTCKEGQGCVVDVVRRNQCQACRFQKCLAVSMNRHAVQHERLG 88
>gi|268580289|ref|XP_002645127.1| C. briggsae CBR-NHR-236 protein [Caenorhabditis briggsae]
Length = 299
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 7/55 (12%)
Query: 10 GVVSC-------QFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNR 57
GV+SC + RNL Y CKE C++DV RRNQCQ+CRF KCL V MNR
Sbjct: 25 GVLSCDGCRGFFKRSIRRNLRYTCKEAKRCVIDVVRRNQCQSCRFQKCLAVSMNR 79
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y CKE+ C +DV RRNQCQACR KC ++ MNRD +
Sbjct: 34 RNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQ 75
>gi|393908793|gb|EJD75208.1| hypothetical protein LOAG_17605 [Loa loa]
Length = 894
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 7 PDCGVVSCQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
P C C+ F R + EYVC ++G+CIVD RN+CQ+CRF KCLQ+ M +++ L
Sbjct: 652 PSCE--GCKGFFRRTIQKKIEYVCYKQGNCIVDQKNRNRCQSCRFQKCLQLGMRQELVHL 709
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 20 RNLEYVCKER---GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK R G C VD T RNQC+ACR KCLQV MN+D +
Sbjct: 71 RNRTYVCKNRSGGGPCPVDKTHRNQCRACRLKKCLQVDMNKDAVQ 115
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK +G C+VD T RNQC+ACR +KC+QV MN+D +
Sbjct: 67 RNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQVGMNKDAVQ 110
>gi|170585082|ref|XP_001897316.1| hypothetical protein [Brugia malayi]
gi|158595264|gb|EDP33831.1| conserved hypothetical protein [Brugia malayi]
Length = 784
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 7 PDCGVVSCQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
P C C+ F R + EY+C ++G+CI+D RN+CQ+CRF KCLQ+ M ++ RL
Sbjct: 542 PSCE--GCKGFFRRTIQKKIEYICYKQGNCIIDQKNRNRCQSCRFKKCLQLGMRQESVRL 599
>gi|297522148|gb|ADI44343.1| tailless protein [Clogmia albipunctata]
Length = 437
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/44 (59%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y CK R G CIVD T RNQC+ACR KC V MNRD +
Sbjct: 64 RNRQYSCKSRSSGQCIVDKTHRNQCRACRLRKCFDVGMNRDAVQ 107
>gi|221131649|ref|XP_002156561.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Hydra magnipapillata]
Length = 419
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN+ Y CK +G C++D+ RRNQCQ CR+ +CL+V MN++ +
Sbjct: 65 RNVSYACKFQGECVIDLKRRNQCQFCRYQRCLKVGMNKNAVQ 106
>gi|339238405|ref|XP_003380757.1| protein tailless [Trichinella spiralis]
gi|316976296|gb|EFV59616.1| protein tailless [Trichinella spiralis]
Length = 445
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK RG C VD T RNQC+ACR SKCLQV MN++ +
Sbjct: 70 RNRQYVCKARGTGQEGSCTVDKTHRNQCRACRLSKCLQVGMNKEAVQ 116
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 29/38 (76%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNR 57
R++ Y CK G C VD RRNQCQACRF KCL+VKMNR
Sbjct: 39 RDMVYTCKGNGGCTVDKKRRNQCQACRFKKCLEVKMNR 76
>gi|391342683|ref|XP_003745645.1| PREDICTED: COUP transcription factor 1-like [Metaseiulus
occidentalis]
Length = 465
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+L + CKE G C+VDV RRNQCQACR KCL V M R+
Sbjct: 109 RDLRFSCKEGGTCVVDVARRNQCQACRLKKCLAVNMRREA 148
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK +G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 61 RNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 104
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK +G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 61 RNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 104
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK +G C+VD T RNQC+ACR +KC+ V MN+D +
Sbjct: 67 RNRQYVCKAKSKGGCMVDKTHRNQCRACRLAKCIHVGMNKDAVQ 110
>gi|350646662|emb|CCD58689.1| nuclear hormone receptor nor-1/nor-2, putative [Schistosoma mansoni]
Length = 1550
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC + +C+VD RRN+CQ CRF KCL+V M ++
Sbjct: 980 CQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQKCLKVGMVKE 1039
Query: 59 VTR 61
V R
Sbjct: 1040 VVR 1042
>gi|301615499|ref|XP_002937209.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Xenopus (Silurana) tropicalis]
Length = 405
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C+VD T RNQC+ACR KCL+V MN+D +
Sbjct: 65 RNRSYVCKSGNQGGCLVDKTHRNQCRACRLKKCLEVNMNKDAVQ 108
>gi|383856816|ref|XP_003703903.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 397
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 61 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 104
>gi|358333094|dbj|GAA40423.2| nuclear receptor subfamily 4 group A member 3, partial [Clonorchis
sinensis]
Length = 1180
Score = 58.2 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC + +C+VD RRN+CQ CRF KCL+V M ++
Sbjct: 871 CQHYGVRTCEGCKGFFKRTIQKNAQYVCLQSKNCVVDKRRRNRCQYCRFQKCLKVGMVKE 930
Query: 59 VTR 61
V R
Sbjct: 931 VVR 933
>gi|241630969|ref|XP_002410230.1| nuclear receptor, putative [Ixodes scapularis]
gi|215503353|gb|EEC12847.1| nuclear receptor, putative [Ixodes scapularis]
Length = 100
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
R L+YVCKE G C+VDV RRNQCQACR +KCL+ M
Sbjct: 48 RQLQYVCKEGGACVVDVARRNQCQACRLAKCLRAAM 83
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK +G+ C +D T RNQC+ACR KC+QV MN+D +
Sbjct: 46 RNRQYVCKNKGNGPCPIDKTHRNQCRACRLKKCVQVDMNKDAVQ 89
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 57.8 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 36 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 79
>gi|297592502|gb|ADI47122.1| tailless [Polyrhachis vicina]
Length = 419
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 61 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 104
>gi|170570925|ref|XP_001891533.1| tailless protein [Brugia malayi]
gi|158603926|gb|EDP39666.1| tailless protein, putative [Brugia malayi]
Length = 42
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
R+++Y CK+R CIVDV RRNQCQACRF KCL V MN
Sbjct: 4 RSMKYECKDRKQCIVDVARRNQCQACRFRKCLAVSMN 40
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y+CK RG C VD T RNQC+ACR KCL+ MN+D +
Sbjct: 47 RNRQYICKSRGQGTCPVDKTHRNQCRACRLKKCLEAGMNKDAVQ 90
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 61 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 104
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|55140659|gb|AAV41874.1| tailless [Musca domestica]
Length = 442
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|402587214|gb|EJW81149.1| hypothetical protein WUBG_07942, partial [Wuchereria bancrofti]
Length = 59
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
R+++Y CK+R CIVDV RRNQCQACRF KCL V MN
Sbjct: 21 RSMKYECKDRKQCIVDVARRNQCQACRFRKCLAVSMN 57
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|268536318|ref|XP_002633294.1| C. briggsae CBR-NHR-67 protein [Caenorhabditis briggsae]
Length = 426
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Query: 20 RNLEYVCKERGH-----CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK +G+ CIVD T RNQC+ACR KCL++ MN+D +
Sbjct: 51 RHRQYVCKNKGNFDEGRCIVDKTHRNQCRACRLRKCLEIGMNKDAVQ 97
>gi|307213614|gb|EFN89000.1| Nuclear receptor subfamily 2 group E member 1 [Harpegnathos
saltator]
Length = 415
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G C+VD T RNQC+ACR +KC+Q MN+D +
Sbjct: 75 RNRQYVCKAKSEGGCMVDKTHRNQCRACRLAKCIQAGMNKDAVQ 118
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|194277579|gb|AAR28090.2| nuclear hormone receptor 4A protein [Schistosoma mansoni]
Length = 827
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC + +C+VD RRN+CQ CRF KCL+V M ++
Sbjct: 257 CQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQKCLKVGMVKE 316
Query: 59 VTR 61
V R
Sbjct: 317 VVR 319
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 83 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 126
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|308491334|ref|XP_003107858.1| CRE-NHR-67 protein [Caenorhabditis remanei]
gi|308249805|gb|EFO93757.1| CRE-NHR-67 protein [Caenorhabditis remanei]
Length = 422
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Query: 20 RNLEYVCKERGH-----CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK +G+ CIVD T RNQC+ACR KCL++ MN+D +
Sbjct: 51 RHRQYVCKNKGNFDEGRCIVDKTHRNQCRACRLRKCLEIGMNKDAVQ 97
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|313240854|emb|CBY33143.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
G+++C+ F R N Y C G C+VD T RN+CQACR KCL + M+RD +
Sbjct: 55 GIITCEGCKGFFRRSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRDAVKF 114
Query: 63 G 63
G
Sbjct: 115 G 115
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 106 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 149
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 57 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 100
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 83 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 126
>gi|392889409|ref|NP_494368.2| Protein NHR-119 [Caenorhabditis elegans]
gi|373220323|emb|CCD72969.1| Protein NHR-119 [Caenorhabditis elegans]
Length = 708
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 10 GVVSC---QFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GVV+C + F R L EY C+ GHC+VD RN C+ CRF KC++V M+ R
Sbjct: 48 GVVTCFGCKGFFRRTLKRPSEYTCRHNGHCVVDRHERNSCRFCRFKKCIEVGMDPKAVR 106
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 57 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 100
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
Length = 386
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform
1 [Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog
(predicted) [Sorex araneus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Nomascus leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Loxodonta africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic
construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Papio anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 43 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 86
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2
group E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 69 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 112
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|256052096|ref|XP_002569614.1| nuclear hormone receptor nor-1/nor-2 [Schistosoma mansoni]
Length = 704
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC + +C+VD RRN+CQ CRF KCL+V M ++
Sbjct: 257 CQHYGVRTCEGCKGFFKRTIQKNAQYVCLQAKNCVVDKRRRNRCQYCRFQKCLKVGMVKE 316
Query: 59 VTR 61
V R
Sbjct: 317 VVR 319
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Otolemur garnettii]
Length = 385
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>gi|291242825|ref|XP_002741306.1| PREDICTED: nuclear receptor subfamily 4, group A, member 2-like
[Saccoglossus kowalevskii]
Length = 708
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R ++ Y+C E+ C VD RRN CQ CRF KCL+V M +DV R
Sbjct: 380 CKGFFKRTVQKSSRYLCLEKQSCRVDKRRRNHCQYCRFQKCLEVGMMKDVVR 431
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 57 RNRTYVCKSGTQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 100
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 57 RNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 100
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFDVGMNKDAVQ 107
>gi|312382715|gb|EFR28076.1| hypothetical protein AND_04416 [Anopheles darlingi]
Length = 542
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK + C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 105 RSRQYVCKSKAEVACVVDKTHRNQCRACRLKKCFEVGMNKDAVQ 148
>gi|387966309|gb|AFK14016.1| glucocorticoid receptor 2b [Pantodon buchholzi]
Length = 752
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ MN + +
Sbjct: 409 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARK 463
>gi|20563133|gb|AAM27888.1|AF263739_1 glucocorticoid receptor isoform 2a [Haplochromis burtoni]
Length = 793
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ MN + +
Sbjct: 456 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARK 510
>gi|307203729|gb|EFN82689.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 547
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 21 NLEYVCK----ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
N EY+CK ++G C +D T RNQC+ACR +KC + MN+D T
Sbjct: 38 NREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANMNKDAT 81
>gi|118344390|ref|NP_001072021.1| nuclear receptor [Ciona intestinalis]
gi|70571079|dbj|BAE06675.1| nuclear receptor [Ciona intestinalis]
Length = 802
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C G+CI+D + RN+CQ CR KCL+ M++D +
Sbjct: 178 GVITCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKF 237
Query: 63 G 63
G
Sbjct: 238 G 238
>gi|118344432|ref|NP_001072038.1| nuclear receptor [Ciona intestinalis]
gi|70571084|dbj|BAE06676.1| nuclear receptor [Ciona intestinalis]
Length = 651
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C G+CI+D + RN+CQ CR KCL+ M++D +
Sbjct: 27 GVITCEGCKGFFRRSQQNNYAYSCPRHGNCIIDRSNRNRCQHCRLQKCLRAGMSKDAVKF 86
Query: 63 G 63
G
Sbjct: 87 G 87
>gi|291238706|ref|XP_002739270.1| PREDICTED: nuclear receptor nhr-7A-like [Saccoglossus kowalevskii]
Length = 446
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
G++SC+ R EYVC G C VD T+RN+C +CR+ KC+++ M+++ R+
Sbjct: 52 GIISCEGCKGFFRRCLRRQKEYVCIRGGKCEVDRTKRNRCPSCRYKKCIELGMSKEAVRI 111
Query: 63 G 63
G
Sbjct: 112 G 112
>gi|219966127|emb|CAM91423.1| putative glucocorticoid receptor [Cyprinus carpio]
Length = 721
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ MN + +
Sbjct: 382 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARK 436
>gi|118788495|ref|XP_316782.3| AGAP000819-PA [Anopheles gambiae str. PEST]
gi|116126135|gb|EAA12047.4| AGAP000819-PA [Anopheles gambiae str. PEST]
Length = 436
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK + C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 63 RSRQYVCKSKSEVPCVVDKTHRNQCRACRLKKCFEVGMNKDAVQ 106
>gi|353231555|emb|CCD77973.1| putative coup transcription factor [Schistosoma mansoni]
Length = 1064
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67
R L Y C+ C +D+ RNQCQ CRF KC++V M ++ + G P
Sbjct: 419 RQLNYTCRNNKQCPIDINHRNQCQYCRFQKCIKVGMRKEAVQQGRLPP 466
>gi|295656543|gb|ADG26734.1| tailless protein [Platynereis dumerilii]
Length = 190
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKER-GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y+CK R G C VD T RNQC+ACR KCL+ MN+D +
Sbjct: 21 RNRQYICKSRNGSCPVDKTHRNQCRACRLKKCLEAGMNKDAVQ 63
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G CIVD RNQCQACR KCLQ+ MN+D +
Sbjct: 129 RKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 171
>gi|358335063|dbj|GAA34732.2| nuclear receptor subfamily 2 group F member 1-B [Clonorchis
sinensis]
Length = 748
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R++ YVC+ G C VD RRNQCQACR ++CL M ++ R
Sbjct: 240 CKSFFKRSVRKSASYVCRSEGQCPVDAQRRNQCQACRMTRCLLAGMKKEGLR 291
>gi|348516850|ref|XP_003445950.1| PREDICTED: glucocorticoid receptor [Oreochromis niloticus]
Length = 779
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +L
Sbjct: 440 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARKL 495
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN +YVCK + G C+VD T RNQC+ACR KC++V MN+D
Sbjct: 40 RNRQYVCKAKSEGACLVDKTHRNQCRACRLRKCVEVGMNKDA 81
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y+CK R G C VD T RNQC+ACR KC++ MN+D +
Sbjct: 44 RNRQYICKSRSQGLCPVDKTHRNQCRACRLKKCVECGMNKDAVQ 87
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD T RNQCQACR KCLQ+ MN+D +
Sbjct: 96 RKLIYRCQAGTGLCVVDKTHRNQCQACRLKKCLQMGMNKDAVQ 138
>gi|256082368|ref|XP_002577429.1| zinc finger protein [Schistosoma mansoni]
gi|353232857|emb|CCD80213.1| putative zinc finger protein [Schistosoma mansoni]
Length = 408
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 20 RNLEYVCKERGH----------CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y CK RG C VD + RNQC+ACR +KCL+V MN+D +
Sbjct: 41 RNRQYTCKSRGTTIGSKSGIVVCRVDKSHRNQCRACRLTKCLEVGMNKDAVQ 92
>gi|393910973|gb|EFO28247.2| nuclear receptor NHR-67 [Loa loa]
Length = 301
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 12 VSCQFVFVRNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
V C+ R+ +YVCK RG C+VD T RNQC+ACR +KCL++ MN++
Sbjct: 19 VPCRRSIRRHRQYVCKNRGGGEEGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 71
>gi|20563131|gb|AAM27887.1|AF263738_1 glucocorticoid receptor isoform 1 [Haplochromis burtoni]
Length = 779
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +L
Sbjct: 440 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARKL 495
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G CIVD RNQCQACR KCLQ+ MN+D +
Sbjct: 110 RKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 152
>gi|312065519|ref|XP_003135830.1| nuclear receptor NHR-67 [Loa loa]
Length = 330
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 12 VSCQFVFVRNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
V C+ R+ +YVCK RG C+VD T RNQC+ACR +KCL++ MN++
Sbjct: 9 VPCRRSIRRHRQYVCKNRGGGEEGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 61
>gi|390334919|ref|XP_003724040.1| PREDICTED: uncharacterized protein LOC100890792
[Strongylocentrotus purpuratus]
Length = 917
Score = 54.7 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 14 CQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R+L Y C G C + + RNQCQ CR+ KCL V M++D +RLG
Sbjct: 20 CKGFFRRSLNQHESYTCSNNGQCEISLYTRNQCQLCRWKKCLGVGMSKDGSRLG 73
>gi|312118884|ref|XP_003151630.1| DR-78 [Loa loa]
gi|307753205|gb|EFO12439.1| hypothetical protein LOAG_16094 [Loa loa]
Length = 149
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+ +EYVC ++G+CIVD RN+CQ+CRF KCLQ+ M ++ RL
Sbjct: 95 KKIEYVCYKQGNCIVDQKNRNRCQSCRFKKCLQLGMRQESVRL 137
>gi|242276427|gb|ACS91455.1| glucocorticoid receptor [Salmo salar]
Length = 725
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ MN + +
Sbjct: 398 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGMNLEARK 452
>gi|449269197|gb|EMC79999.1| Glucocorticoid receptor [Columba livia]
Length = 762
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 434 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKF 489
>gi|358254993|dbj|GAA56686.1| nuclear hormone receptor family member nhr-67 [Clonorchis sinensis]
Length = 1106
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 11/50 (22%)
Query: 20 RNLEYVCKER-----------GHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RN +Y CK R G C VD + RNQC+ACR KCL+V MNRD
Sbjct: 53 RNRQYACKNRTANGTKLSTAVGGCRVDKSHRNQCRACRLKKCLEVGMNRD 102
>gi|194206592|ref|XP_001918176.1| PREDICTED: nuclear receptor ROR-alpha-like [Equus caballus]
Length = 839
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 402 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 461
Query: 63 G 63
G
Sbjct: 462 G 462
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 179 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 220
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 141 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 183
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 57 RNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|444908228|dbj|BAM78289.1| glucocorticoid receptor [Alligator mississippiensis]
Length = 780
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 441 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 495
>gi|444728639|gb|ELW69088.1| Glucocorticoid receptor [Tupaia chinensis]
Length = 776
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>gi|74354555|gb|AAI02221.1| NR3C1 protein [Bos taurus]
Length = 500
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 496
>gi|56606057|ref|NP_001008481.1| glucocorticoid receptor [Sus scrofa]
gi|115502393|sp|Q9N1U3.3|GCR_PIG RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|55824364|gb|AAV66324.1| glucocorticoid receptor alpha [Sus scrofa]
Length = 782
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 443 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 497
>gi|114602493|ref|XP_001154855.1| PREDICTED: glucocorticoid receptor isoform 5 [Pan troglodytes]
gi|114602495|ref|XP_001154912.1| PREDICTED: glucocorticoid receptor isoform 6 [Pan troglodytes]
gi|114602505|ref|XP_001155176.1| PREDICTED: glucocorticoid receptor isoform 11 [Pan troglodytes]
gi|114602507|ref|XP_001155243.1| PREDICTED: glucocorticoid receptor isoform 12 [Pan troglodytes]
gi|410265302|gb|JAA20617.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410265304|gb|JAA20618.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410354371|gb|JAA43789.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410354373|gb|JAA43790.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|12659339|gb|AAK01303.1|AF337042_1 glucocorticoid receptor [Saimiri sciureus]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|19343485|gb|AAL66772.2| glucocorticoid receptor [Rattus norvegicus]
Length = 794
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 456 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 510
>gi|18766326|gb|AAL78956.1|AF455050_1 glucocorticoid receptor [Rattus norvegicus]
Length = 793
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 455 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 509
>gi|1354498|gb|AAB07866.1| green fluorescent protein-glucocorticoid receptor chimeric protein
[Cloning vector pCI-nGFP-C656G]
Length = 1070
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 732 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 786
>gi|83721947|ref|NP_001032915.1| glucocorticoid receptor [Gallus gallus]
gi|77863913|gb|ABB05045.1| glucocorticoid receptor [Gallus gallus]
Length = 772
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 433 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 487
>gi|73949531|ref|XP_535225.2| PREDICTED: glucocorticoid receptor [Canis lupus familiaris]
Length = 780
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 441 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 495
>gi|204272|gb|AAA41203.1| glucocorticoid receptor [Rattus norvegicus]
Length = 795
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 457 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 511
>gi|74221032|dbj|BAE33674.1| unnamed protein product [Mus musculus]
Length = 783
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>gi|74199135|dbj|BAE33113.1| unnamed protein product [Mus musculus]
gi|120538339|gb|AAI29914.1| Nr3c1 protein [Mus musculus]
gi|120538575|gb|AAI29913.1| Nr3c1 protein [Mus musculus]
gi|148678114|gb|EDL10061.1| nuclear receptor subfamily 3, group C, member 1, isoform CRA_a [Mus
musculus]
Length = 783
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>gi|68051956|sp|Q5R9P5.2|GCR_PONAB RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|62898920|dbj|BAD97314.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) variant [Homo sapiens]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|62858859|ref|NP_001016967.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Xenopus (Silurana) tropicalis]
gi|89271883|emb|CAJ81814.1| nr3c1 [Xenopus (Silurana) tropicalis]
Length = 778
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 439 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|207080130|ref|NP_001128816.1| DKFZP459B1228 protein [Pongo abelii]
gi|55729570|emb|CAH91515.1| hypothetical protein [Pongo abelii]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|34364621|emb|CAE45716.1| hypothetical protein [Homo sapiens]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|2500911|sp|Q95267.1|GCR_TUPGB RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|1644384|emb|CAA99379.1| glucocorticoid receptor [Tupaia belangeri]
Length = 776
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>gi|1730255|sp|P49844.1|GCR_XENLA RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|444043|emb|CAA51010.1| glucocorticoid receptor protein [Xenopus laevis]
Length = 776
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>gi|121073|sp|P06537.1|GCR_MOUSE RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|51058|emb|CAA28031.1| unnamed protein product [Mus musculus]
Length = 783
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>gi|56325|emb|CAA68545.1| unnamed protein product [Rattus norvegicus]
Length = 515
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 457 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 511
>gi|410948531|ref|XP_003980985.1| PREDICTED: glucocorticoid receptor isoform 1 [Felis catus]
Length = 780
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 441 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 495
>gi|410225834|gb|JAA10136.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410225836|gb|JAA10137.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410307554|gb|JAA32377.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
gi|410307556|gb|JAA32378.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Pan troglodytes]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|402872917|ref|XP_003900339.1| PREDICTED: glucocorticoid receptor [Papio anubis]
Length = 676
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|397517905|ref|XP_003829144.1| PREDICTED: glucocorticoid receptor isoform 1 [Pan paniscus]
gi|397517907|ref|XP_003829145.1| PREDICTED: glucocorticoid receptor isoform 2 [Pan paniscus]
gi|397517909|ref|XP_003829146.1| PREDICTED: glucocorticoid receptor isoform 3 [Pan paniscus]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|395504814|ref|XP_003756742.1| PREDICTED: glucocorticoid receptor [Sarcophilus harrisii]
Length = 767
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 428 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 482
>gi|380812070|gb|AFE77910.1| glucocorticoid receptor isoform alpha [Macaca mulatta]
gi|383410103|gb|AFH28265.1| glucocorticoid receptor isoform alpha [Macaca mulatta]
gi|383410105|gb|AFH28266.1| glucocorticoid receptor isoform alpha [Macaca mulatta]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|375314802|gb|AFA52010.1| glucocorticoid receptor [Homo sapiens]
Length = 745
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|354480551|ref|XP_003502468.1| PREDICTED: glucocorticoid receptor-like [Cricetulus griseus]
Length = 773
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 435 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 489
>gi|344265098|ref|XP_003404624.1| PREDICTED: glucocorticoid receptor [Loxodonta africana]
Length = 776
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>gi|344254142|gb|EGW10246.1| Glucocorticoid receptor [Cricetulus griseus]
Length = 748
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 410 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 464
>gi|332001938|gb|AED99115.1| nuclear receptor subfamily 3 group C member 1 variant DL-1 [Homo
sapiens]
Length = 662
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|332001936|gb|AED99114.1| nuclear receptor subfamily 3 group C member 1 variant NS-1 [Homo
sapiens]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|332234849|ref|XP_003266615.1| PREDICTED: glucocorticoid receptor isoform 8 [Nomascus leucogenys]
Length = 742
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|332234835|ref|XP_003266608.1| PREDICTED: glucocorticoid receptor isoform 1 [Nomascus leucogenys]
gi|332234837|ref|XP_003266609.1| PREDICTED: glucocorticoid receptor isoform 2 [Nomascus leucogenys]
gi|332234839|ref|XP_003266610.1| PREDICTED: glucocorticoid receptor isoform 3 [Nomascus leucogenys]
gi|332234841|ref|XP_003266611.1| PREDICTED: glucocorticoid receptor isoform 4 [Nomascus leucogenys]
gi|332234843|ref|XP_003266612.1| PREDICTED: glucocorticoid receptor isoform 5 [Nomascus leucogenys]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|327265250|ref|XP_003217421.1| PREDICTED: glucocorticoid receptor-like [Anolis carolinensis]
Length = 773
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 434 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 488
>gi|324021685|ref|NP_001191194.1| glucocorticoid receptor isoform GR-P [Homo sapiens]
Length = 676
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|324021673|ref|NP_001191188.1| glucocorticoid receptor isoform alpha-C1 [Homo sapiens]
Length = 692
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 353 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 407
>gi|324021671|ref|NP_001191187.1| glucocorticoid receptor isoform alpha-B [Homo sapiens]
Length = 751
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 412 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 466
>gi|319412066|dbj|BAJ61740.1| glucocorticoid receptor [Cynops pyrrhogaster]
Length = 771
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 432 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 486
>gi|306922692|gb|ADN07557.1| nuclear receptor subfamily 3, group C, member 1 [Microtus
ochrogaster]
gi|306922695|gb|ADN07559.1| nuclear receptor subfamily 3, group C, member 1 [Microtus
ochrogaster]
Length = 773
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 435 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 489
>gi|304274126|gb|ADM18962.1| glucocorticoid receptor beta [Mus musculus]
Length = 748
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>gi|224067332|ref|XP_002192988.1| PREDICTED: glucocorticoid receptor [Taeniopygia guttata]
Length = 773
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 434 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 488
>gi|216409740|dbj|BAH02307.1| glucocorticoid receptor [Homo sapiens]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|166795307|ref|NP_001107658.1| glucocorticoid receptor [Ovis aries]
gi|165987667|gb|ABY77241.1| glucocorticoid receptor [Ovis aries]
Length = 781
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 496
>gi|304434809|ref|NP_001182120.1| glucocorticoid receptor [Equus caballus]
Length = 775
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 436 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 490
>gi|149632435|ref|XP_001510749.1| PREDICTED: glucocorticoid receptor-like [Ornithorhynchus anatinus]
Length = 775
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 436 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 490
>gi|158303300|ref|NP_036708.2| glucocorticoid receptor [Rattus norvegicus]
gi|149017411|gb|EDL76462.1| nuclear receptor subfamily 3, group C, member 1 [Rattus norvegicus]
Length = 794
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 456 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 510
>gi|124111205|gb|ABM91989.1| NR3C1 [Pan troglodytes]
Length = 674
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|121483947|gb|ABM54283.1| NR3C1 [Pan paniscus]
Length = 630
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|121247453|ref|NP_032199.3| glucocorticoid receptor [Mus musculus]
Length = 792
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 454 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 508
>gi|97043672|gb|ABF57998.1| glucocorticoid receptor [Mus musculus]
Length = 791
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 453 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 507
>gi|114602486|ref|XP_001154508.1| PREDICTED: glucocorticoid receptor isoform 1 [Pan troglodytes]
Length = 742
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|109079141|ref|XP_001097126.1| PREDICTED: glucocorticoid receptor isoform 3 [Macaca mulatta]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|147905187|ref|NP_001081531.1| glucocorticoid receptor protein [Xenopus laevis]
gi|50417552|gb|AAH77547.1| XGR protein [Xenopus laevis]
Length = 776
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>gi|66528642|ref|NP_001018661.1| glucocorticoid receptor isoform beta [Homo sapiens]
gi|31682|emb|CAA27054.1| beta-glucocorticoid receptor [Homo sapiens]
gi|2218075|gb|AAB64354.1| glucocorticoid receptor beta [Homo sapiens]
gi|119582275|gb|EAW61871.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor), isoform CRA_b [Homo sapiens]
gi|311348218|gb|ADP91134.1| glucocorticoid receptor [Homo sapiens]
gi|311348222|gb|ADP91137.1| glucocorticoid receptor [Homo sapiens]
gi|311348226|gb|ADP91140.1| glucocorticoid receptor [Homo sapiens]
gi|311348230|gb|ADP91143.1| glucocorticoid receptor [Homo sapiens]
gi|311348234|gb|ADP91146.1| glucocorticoid receptor [Homo sapiens]
gi|311348238|gb|ADP91149.1| glucocorticoid receptor [Homo sapiens]
gi|311348242|gb|ADP91152.1| glucocorticoid receptor [Homo sapiens]
gi|311348246|gb|ADP91155.1| glucocorticoid receptor [Homo sapiens]
gi|311348250|gb|ADP91158.1| glucocorticoid receptor [Homo sapiens]
gi|311348254|gb|ADP91161.1| glucocorticoid receptor [Homo sapiens]
gi|311348258|gb|ADP91164.1| glucocorticoid receptor [Homo sapiens]
gi|311348262|gb|ADP91167.1| glucocorticoid receptor [Homo sapiens]
gi|311348266|gb|ADP91170.1| glucocorticoid receptor [Homo sapiens]
gi|311348270|gb|ADP91173.1| glucocorticoid receptor [Homo sapiens]
gi|311348274|gb|ADP91176.1| glucocorticoid receptor [Homo sapiens]
gi|311348278|gb|ADP91179.1| glucocorticoid receptor [Homo sapiens]
gi|311348282|gb|ADP91182.1| glucocorticoid receptor [Homo sapiens]
gi|311348286|gb|ADP91185.1| glucocorticoid receptor [Homo sapiens]
gi|311348290|gb|ADP91188.1| glucocorticoid receptor [Homo sapiens]
gi|311348294|gb|ADP91191.1| glucocorticoid receptor [Homo sapiens]
gi|311348298|gb|ADP91194.1| glucocorticoid receptor [Homo sapiens]
gi|311348302|gb|ADP91197.1| glucocorticoid receptor [Homo sapiens]
gi|311348306|gb|ADP91200.1| glucocorticoid receptor [Homo sapiens]
gi|311348310|gb|ADP91203.1| glucocorticoid receptor [Homo sapiens]
gi|311348314|gb|ADP91206.1| glucocorticoid receptor [Homo sapiens]
gi|311348318|gb|ADP91209.1| glucocorticoid receptor [Homo sapiens]
gi|311348322|gb|ADP91212.1| glucocorticoid receptor [Homo sapiens]
gi|311348326|gb|ADP91215.1| glucocorticoid receptor [Homo sapiens]
gi|311348330|gb|ADP91218.1| glucocorticoid receptor [Homo sapiens]
gi|311348334|gb|ADP91221.1| glucocorticoid receptor [Homo sapiens]
gi|311348338|gb|ADP91224.1| glucocorticoid receptor [Homo sapiens]
gi|311348342|gb|ADP91227.1| glucocorticoid receptor [Homo sapiens]
gi|311348346|gb|ADP91230.1| glucocorticoid receptor [Homo sapiens]
gi|311348350|gb|ADP91233.1| glucocorticoid receptor [Homo sapiens]
gi|311348354|gb|ADP91236.1| glucocorticoid receptor [Homo sapiens]
gi|311348358|gb|ADP91239.1| glucocorticoid receptor [Homo sapiens]
gi|311348362|gb|ADP91242.1| glucocorticoid receptor [Homo sapiens]
gi|311348366|gb|ADP91245.1| glucocorticoid receptor [Homo sapiens]
gi|311348370|gb|ADP91248.1| glucocorticoid receptor [Homo sapiens]
gi|311348374|gb|ADP91251.1| glucocorticoid receptor [Homo sapiens]
gi|224793|prf||1201277B glucocorticoid receptor beta
Length = 742
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|403255812|ref|XP_003920603.1| PREDICTED: glucocorticoid receptor [Saimiri boliviensis
boliviensis]
gi|3023864|sp|O13186.1|GCR_SAIBB RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|1843610|gb|AAC51131.1| glucocorticoid receptor [Saimiri boliviensis boliviensis]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|1934981|emb|CAA72938.1| glucocorticoid receptor [Rattus norvegicus]
Length = 795
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 457 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 511
>gi|2500909|sp|P79686.1|GCR_AOTNA RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|1843612|gb|AAC51132.1| glucocorticoid receptor [Aotus nancymaae]
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|1169883|sp|P06536.2|GCR_RAT RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
Length = 795
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 457 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 511
>gi|4504133|ref|NP_000167.1| glucocorticoid receptor isoform alpha [Homo sapiens]
gi|66528530|ref|NP_001018084.1| glucocorticoid receptor isoform alpha [Homo sapiens]
gi|66528563|ref|NP_001018085.1| glucocorticoid receptor isoform alpha [Homo sapiens]
gi|66528586|ref|NP_001018086.1| glucocorticoid receptor isoform alpha [Homo sapiens]
gi|66528611|ref|NP_001018087.1| glucocorticoid receptor isoform alpha [Homo sapiens]
gi|121069|sp|P04150.1|GCR_HUMAN RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|31680|emb|CAA26976.1| alpha-glucocorticoid receptor [Homo sapiens]
gi|2218074|gb|AAB64353.1| glucocorticoid receptor alpha [Homo sapiens]
gi|15990458|gb|AAH15610.1| Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Homo sapiens]
gi|37675287|gb|AAQ97180.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Homo sapiens]
gi|119582276|gb|EAW61872.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor), isoform CRA_c [Homo sapiens]
gi|119582277|gb|EAW61873.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor), isoform CRA_c [Homo sapiens]
gi|166706799|gb|ABY87547.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [Homo sapiens]
gi|167773143|gb|ABZ92006.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor) [synthetic construct]
gi|261857864|dbj|BAI45454.1| nuclear receptor subfamily 3, group C, member 1 [synthetic
construct]
gi|311348219|gb|ADP91135.1| glucocorticoid receptor [Homo sapiens]
gi|311348223|gb|ADP91138.1| glucocorticoid receptor [Homo sapiens]
gi|311348227|gb|ADP91141.1| glucocorticoid receptor [Homo sapiens]
gi|311348231|gb|ADP91144.1| glucocorticoid receptor [Homo sapiens]
gi|311348235|gb|ADP91147.1| glucocorticoid receptor [Homo sapiens]
gi|311348239|gb|ADP91150.1| glucocorticoid receptor [Homo sapiens]
gi|311348243|gb|ADP91153.1| glucocorticoid receptor [Homo sapiens]
gi|311348247|gb|ADP91156.1| glucocorticoid receptor [Homo sapiens]
gi|311348251|gb|ADP91159.1| glucocorticoid receptor [Homo sapiens]
gi|311348255|gb|ADP91162.1| glucocorticoid receptor [Homo sapiens]
gi|311348259|gb|ADP91165.1| glucocorticoid receptor [Homo sapiens]
gi|311348263|gb|ADP91168.1| glucocorticoid receptor [Homo sapiens]
gi|311348267|gb|ADP91171.1| glucocorticoid receptor [Homo sapiens]
gi|311348271|gb|ADP91174.1| glucocorticoid receptor [Homo sapiens]
gi|311348275|gb|ADP91177.1| glucocorticoid receptor [Homo sapiens]
gi|311348279|gb|ADP91180.1| glucocorticoid receptor [Homo sapiens]
gi|311348283|gb|ADP91183.1| glucocorticoid receptor [Homo sapiens]
gi|311348287|gb|ADP91186.1| glucocorticoid receptor [Homo sapiens]
gi|311348291|gb|ADP91189.1| glucocorticoid receptor [Homo sapiens]
gi|311348295|gb|ADP91192.1| glucocorticoid receptor [Homo sapiens]
gi|311348299|gb|ADP91195.1| glucocorticoid receptor [Homo sapiens]
gi|311348303|gb|ADP91198.1| glucocorticoid receptor [Homo sapiens]
gi|311348307|gb|ADP91201.1| glucocorticoid receptor [Homo sapiens]
gi|311348311|gb|ADP91204.1| glucocorticoid receptor [Homo sapiens]
gi|311348315|gb|ADP91207.1| glucocorticoid receptor [Homo sapiens]
gi|311348319|gb|ADP91210.1| glucocorticoid receptor [Homo sapiens]
gi|311348323|gb|ADP91213.1| glucocorticoid receptor [Homo sapiens]
gi|311348327|gb|ADP91216.1| glucocorticoid receptor [Homo sapiens]
gi|311348331|gb|ADP91219.1| glucocorticoid receptor [Homo sapiens]
gi|311348335|gb|ADP91222.1| glucocorticoid receptor [Homo sapiens]
gi|311348339|gb|ADP91225.1| glucocorticoid receptor [Homo sapiens]
gi|311348343|gb|ADP91228.1| glucocorticoid receptor [Homo sapiens]
gi|311348347|gb|ADP91231.1| glucocorticoid receptor [Homo sapiens]
gi|311348351|gb|ADP91234.1| glucocorticoid receptor [Homo sapiens]
gi|311348355|gb|ADP91237.1| glucocorticoid receptor [Homo sapiens]
gi|311348359|gb|ADP91240.1| glucocorticoid receptor [Homo sapiens]
gi|311348363|gb|ADP91243.1| glucocorticoid receptor [Homo sapiens]
gi|311348367|gb|ADP91246.1| glucocorticoid receptor [Homo sapiens]
gi|311348371|gb|ADP91249.1| glucocorticoid receptor [Homo sapiens]
gi|311348375|gb|ADP91252.1| glucocorticoid receptor [Homo sapiens]
gi|325495455|gb|ADZ17333.1| glucocorticoid nuclear receptor variant 1 [Homo sapiens]
gi|224792|prf||1201277A glucocorticoid receptor alpha
Length = 777
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 46 RNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|120974620|gb|ABM46704.1| NR3C1 [Gorilla gorilla]
Length = 489
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMN 487
>gi|116284029|gb|AAH16462.1| Nr3c1 protein [Mus musculus]
Length = 505
Score = 54.7 bits (130), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMN 494
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 46 RNRSYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>gi|30315966|sp|Q8VII8.2|MCR_MOUSE RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
Length = 978
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 CGVVSCQFVFVRNLE--YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|324021675|ref|NP_001191189.1| glucocorticoid receptor isoform alpha-C2 [Homo sapiens]
Length = 688
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 349 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 403
>gi|312385998|gb|EFR30376.1| hypothetical protein AND_00091 [Anopheles darlingi]
Length = 787
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RN Y CK +G C VD T RNQC+ACR SKC Q MN+D
Sbjct: 66 RNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 108
>gi|118721268|emb|CAJ65924.1| glucocorticoid receptor [Homo sapiens]
Length = 751
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 412 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 466
>gi|126290524|ref|XP_001368983.1| PREDICTED: glucocorticoid receptor [Monodelphis domestica]
Length = 777
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|290565151|ref|NP_001166458.1| glucocorticoid receptor [Cavia porcellus]
gi|1346115|sp|P49115.1|GCR_CAVPO RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|290900|gb|AAA61612.1| glucocorticoid receptor [Cavia porcellus]
Length = 771
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 433 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRENCPACRYRKCLQAGMN 482
>gi|331284122|ref|NP_001193563.1| glucocorticoid receptor [Bos taurus]
gi|296485209|tpg|DAA27324.1| TPA: nuclear receptor subfamily 3, group C, member 1
(glucocorticoid receptor) [Bos taurus]
Length = 781
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 496
>gi|380848797|ref|NP_001244179.1| glucocorticoid receptor [Callithrix jacchus]
gi|75063383|sp|Q6XLJ0.1|GCR_CALJA RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|31324671|gb|AAP48589.1| glucocorticoid receptor [Callithrix jacchus]
Length = 777
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|51118|emb|CAA31738.1| unnamed protein product [Mus musculus]
Length = 755
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>gi|324021677|ref|NP_001191190.1| glucocorticoid receptor isoform alpha-C3 [Homo sapiens]
Length = 680
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 341 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 395
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
RNL Y C+ +C +D+ RNQCQ CR KC++V M +D + G
Sbjct: 12 RNLAYTCRAFQNCSIDLNHRNQCQYCRLKKCVKVGMRKDAVQKG 55
>gi|10334676|emb|CAC10271.1| glucocorticoid receptor [Sus scrofa]
Length = 703
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 402 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 456
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G CIVD RNQCQACR KCLQ+ MN+D +
Sbjct: 131 RKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDAVQ 173
>gi|156551053|ref|XP_001605819.1| PREDICTED: retinoic acid receptor RXR isoform 1 [Nasonia
vitripennis]
Length = 414
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E HC++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 119 KDLTYACREEKHCLIDKRQRNRCQYCRYQKCLTMGMKREAVQ 160
>gi|6016117|sp|O46567.1|GCR_SAISC RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|2801550|gb|AAB97369.1| glucocorticoid receptor [Saimiri sciureus]
Length = 778
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMN 487
>gi|7672667|gb|AAF66595.1|AF141371_1 glucocorticoid receptor [Sus scrofa]
Length = 703
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 402 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 456
>gi|395817347|ref|XP_003782133.1| PREDICTED: glucocorticoid receptor [Otolemur garnettii]
Length = 749
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 411 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 465
>gi|391333770|ref|XP_003741283.1| PREDICTED: protein tailless-like [Metaseiulus occidentalis]
Length = 411
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKERG----HCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y+CK RG C VD T RNQC+ACR KCL+ MNR+ +
Sbjct: 73 RNRHYICKGRGTQANQCPVDKTHRNQCRACRLRKCLEAGMNREAVQ 118
>gi|2500910|sp|P79269.1|GCR_SAGOE RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|1843614|gb|AAC51133.1| glucocorticoid receptor [Saguinus oedipus]
Length = 777
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 39 RNRTYVCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 80
>gi|383859045|ref|XP_003705008.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Megachile rotundata]
Length = 442
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 21 NLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
N EY+CK +G C +D T RNQC+ACR +KC + MNRD +
Sbjct: 58 NREYICKAEGSMKGRCPIDKTHRNQCRACRLAKCFEANMNRDAVQ 102
>gi|345489439|ref|XP_003426139.1| PREDICTED: retinoic acid receptor RXR [Nasonia vitripennis]
Length = 400
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E HC++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 105 KDLTYACREEKHCLIDKRQRNRCQYCRYQKCLTMGMKREAVQ 146
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 192 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 233
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+NL Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 134 KNLSYACREENKCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 175
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+NL Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 134 KNLSYACREENKCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 175
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ Y CK R G C+VD RNQC+ACR +KCL V MN+D +
Sbjct: 49 RDRRYACKARNSGACLVDKAHRNQCRACRLAKCLDVGMNKDAVQ 92
>gi|66528677|ref|NP_001019265.1| glucocorticoid receptor isoform gamma [Homo sapiens]
gi|458657|gb|AAA16603.1| glucocorticoid receptor alpha-2 [Homo sapiens]
gi|119582274|gb|EAW61870.1| nuclear receptor subfamily 3, group C, member 1 (glucocorticoid
receptor), isoform CRA_a [Homo sapiens]
gi|311348220|gb|ADP91136.1| glucocorticoid receptor [Homo sapiens]
gi|311348224|gb|ADP91139.1| glucocorticoid receptor [Homo sapiens]
gi|311348228|gb|ADP91142.1| glucocorticoid receptor [Homo sapiens]
gi|311348232|gb|ADP91145.1| glucocorticoid receptor [Homo sapiens]
gi|311348236|gb|ADP91148.1| glucocorticoid receptor [Homo sapiens]
gi|311348240|gb|ADP91151.1| glucocorticoid receptor [Homo sapiens]
gi|311348244|gb|ADP91154.1| glucocorticoid receptor [Homo sapiens]
gi|311348248|gb|ADP91157.1| glucocorticoid receptor [Homo sapiens]
gi|311348252|gb|ADP91160.1| glucocorticoid receptor [Homo sapiens]
gi|311348256|gb|ADP91163.1| glucocorticoid receptor [Homo sapiens]
gi|311348260|gb|ADP91166.1| glucocorticoid receptor [Homo sapiens]
gi|311348264|gb|ADP91169.1| glucocorticoid receptor [Homo sapiens]
gi|311348268|gb|ADP91172.1| glucocorticoid receptor [Homo sapiens]
gi|311348272|gb|ADP91175.1| glucocorticoid receptor [Homo sapiens]
gi|311348276|gb|ADP91178.1| glucocorticoid receptor [Homo sapiens]
gi|311348280|gb|ADP91181.1| glucocorticoid receptor [Homo sapiens]
gi|311348284|gb|ADP91184.1| glucocorticoid receptor [Homo sapiens]
gi|311348288|gb|ADP91187.1| glucocorticoid receptor [Homo sapiens]
gi|311348292|gb|ADP91190.1| glucocorticoid receptor [Homo sapiens]
gi|311348296|gb|ADP91193.1| glucocorticoid receptor [Homo sapiens]
gi|311348300|gb|ADP91196.1| glucocorticoid receptor [Homo sapiens]
gi|311348304|gb|ADP91199.1| glucocorticoid receptor [Homo sapiens]
gi|311348308|gb|ADP91202.1| glucocorticoid receptor [Homo sapiens]
gi|311348312|gb|ADP91205.1| glucocorticoid receptor [Homo sapiens]
gi|311348316|gb|ADP91208.1| glucocorticoid receptor [Homo sapiens]
gi|311348320|gb|ADP91211.1| glucocorticoid receptor [Homo sapiens]
gi|311348324|gb|ADP91214.1| glucocorticoid receptor [Homo sapiens]
gi|311348328|gb|ADP91217.1| glucocorticoid receptor [Homo sapiens]
gi|311348332|gb|ADP91220.1| glucocorticoid receptor [Homo sapiens]
gi|311348336|gb|ADP91223.1| glucocorticoid receptor [Homo sapiens]
gi|311348340|gb|ADP91226.1| glucocorticoid receptor [Homo sapiens]
gi|311348344|gb|ADP91229.1| glucocorticoid receptor [Homo sapiens]
gi|311348348|gb|ADP91232.1| glucocorticoid receptor [Homo sapiens]
gi|311348352|gb|ADP91235.1| glucocorticoid receptor [Homo sapiens]
gi|311348356|gb|ADP91238.1| glucocorticoid receptor [Homo sapiens]
gi|311348360|gb|ADP91241.1| glucocorticoid receptor [Homo sapiens]
gi|311348364|gb|ADP91244.1| glucocorticoid receptor [Homo sapiens]
gi|311348368|gb|ADP91247.1| glucocorticoid receptor [Homo sapiens]
gi|311348372|gb|ADP91250.1| glucocorticoid receptor [Homo sapiens]
gi|311348376|gb|ADP91253.1| glucocorticoid receptor [Homo sapiens]
Length = 778
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|197097410|ref|NP_001126305.1| glucocorticoid receptor [Pongo abelii]
gi|55731034|emb|CAH92233.1| hypothetical protein [Pongo abelii]
Length = 778
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|355750277|gb|EHH54615.1| hypothetical protein EGM_15494 [Macaca fascicularis]
Length = 778
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|355691706|gb|EHH26891.1| hypothetical protein EGK_16971 [Macaca mulatta]
Length = 778
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|351696464|gb|EHA99382.1| Glucocorticoid receptor [Heterocephalus glaber]
Length = 774
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 435 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 490
>gi|332234845|ref|XP_003266613.1| PREDICTED: glucocorticoid receptor isoform 6 [Nomascus leucogenys]
Length = 778
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|387016124|gb|AFJ50181.1| Glucocorticoid receptor-like [Crotalus adamanteus]
Length = 763
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 424 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 478
>gi|344242733|gb|EGV98836.1| Nuclear receptor subfamily 2 group E member 1 [Cricetulus
griseus]
Length = 323
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 33 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 74
>gi|301753457|ref|XP_002912578.1| PREDICTED: glucocorticoid receptor-like [Ailuropoda melanoleuca]
Length = 781
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 496
>gi|349605409|gb|AEQ00658.1| Glucocorticoid receptor-like protein, partial [Equus caballus]
Length = 396
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 346 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMN 395
>gi|281351453|gb|EFB27037.1| hypothetical protein PANDA_002694 [Ailuropoda melanoleuca]
Length = 432
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF+KCLQV M R+ RL
Sbjct: 122 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFTKCLQVGMLREGVRL 175
>gi|344236487|gb|EGV92590.1| Nuclear receptor ROR-alpha [Cricetulus griseus]
Length = 959
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 28 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 87
Query: 63 G 63
G
Sbjct: 88 G 88
>gi|440898702|gb|ELR50134.1| Glucocorticoid receptor [Bos grunniens mutus]
Length = 782
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 497
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D +
Sbjct: 178 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQ 220
>gi|51120|emb|CAA31739.1| unnamed protein product [Mus musculus]
gi|148678115|gb|EDL10062.1| nuclear receptor subfamily 3, group C, member 1, isoform CRA_b [Mus
musculus]
Length = 756
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 500
>gi|348569978|ref|XP_003470774.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Cavia porcellus]
Length = 788
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC +C VD RRN+CQ CRF KCL V M ++
Sbjct: 463 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 522
Query: 59 VTR 61
V R
Sbjct: 523 VVR 525
>gi|1311505|gb|AAB36006.1| steroid/thyroid orphan receptor homolog gene [Homo sapiens]
Length = 684
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC +C VD RRN+CQ CRF KCL V M ++
Sbjct: 359 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKE 418
Query: 59 VTR 61
V R
Sbjct: 419 VVR 421
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV SC+ F R +EY C G C+V RN+CQ CRF KCL V M+RD R
Sbjct: 829 GVTSCEGCKGFFRRSIQKQIEYRCLRDGKCMVIRLSRNRCQYCRFKKCLAVGMSRDSVRY 888
Query: 63 G 63
G
Sbjct: 889 G 889
>gi|308511839|ref|XP_003118102.1| CRE-FAX-1 protein [Caenorhabditis remanei]
gi|308238748|gb|EFO82700.1| CRE-FAX-1 protein [Caenorhabditis remanei]
Length = 470
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFL 70
R L Y C+ G+CIVD RNQCQACR KCL MN+D R Y SFL
Sbjct: 132 RRLIYRCQAGTGNCIVDKAHRNQCQACRLKKCLNKGMNKDGIRHSTDYDSFL 183
>gi|449491752|ref|XP_002191570.2| PREDICTED: nuclear receptor ROR-beta-like [Taeniopygia guttata]
Length = 461
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 119 GVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 178
Query: 63 G 63
G
Sbjct: 179 G 179
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D +
Sbjct: 176 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQ 218
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G CI+D T RNQC+ACR KC V MN+D +
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQ 111
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|402582253|gb|EJW76199.1| hypothetical protein WUBG_12892, partial [Wuchereria bancrofti]
Length = 237
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+ +EY+C ++G+CI+D RN+CQ+CRF KCLQ+ M ++ RL
Sbjct: 9 KKIEYICYKQGNCIIDQKNRNRCQSCRFKKCLQLGMRQESVRL 51
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G CI+D T RNQC+ACR KC V MN+D +
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQ 111
>gi|38639409|gb|AAO85271.2| glucocorticoid receptor alpha [Bos taurus]
Length = 583
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 244 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 298
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D +
Sbjct: 185 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQ 227
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
RNL+Y C+ + +C +D RNQCQ CR KCL+ M +D + G
Sbjct: 196 RNLQYTCRAKRNCSIDQHHRNQCQHCRLKKCLKAGMRKDAVQRG 239
>gi|281345393|gb|EFB20977.1| hypothetical protein PANDA_000333 [Ailuropoda melanoleuca]
Length = 782
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 442 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 497
>gi|228291|prf||1802363A glucocorticoid receptor
Length = 778
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 9 CGVVSCQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 493
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR SKC Q MN+D +
Sbjct: 65 RNRVYTCKATGDMKGRCPVDKTHRNQCRACRLSKCFQASMNKDAVQ 110
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|28396034|gb|AAO39180.1| nuclear receptor NHR-67 [Caenorhabditis elegans]
Length = 409
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK +G C VD T RNQC+ACR KCL++ MN+D +
Sbjct: 44 RHRQYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDAVQ 90
>gi|444908226|dbj|BAM78288.1| mineralocorticoid receptor [Alligator mississippiensis]
Length = 985
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 621 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|350587737|ref|XP_003357050.2| PREDICTED: mineralocorticoid receptor-like [Sus scrofa]
Length = 837
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|225936142|gb|ACO37437.1| mineralocorticoid receptor [Gallus gallus]
Length = 986
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 626 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 675
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 171 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 216
>gi|149037980|gb|EDL92340.1| nuclear receptor subfamily 3, group C, member 2 [Rattus norvegicus]
Length = 880
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 621 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|144227212|ref|NP_001077375.1| mineralocorticoid receptor [Mus musculus]
gi|126631956|gb|AAI33714.1| Nr3c2 protein [Mus musculus]
Length = 980
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|115529242|ref|NP_001070158.1| mineralocorticoid receptor [Taeniopygia guttata]
gi|108864762|gb|ABG22617.1| nuclear receptor subfamily 3 group C member 2 [Taeniopygia guttata]
Length = 981
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 622 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|6981208|ref|NP_037263.1| mineralocorticoid receptor [Rattus norvegicus]
gi|126886|sp|P22199.1|MCR_RAT RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|205341|gb|AAA41583.1| mineralocorticoid receptor [Rattus norvegicus]
Length = 981
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 621 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D +
Sbjct: 175 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQ 217
>gi|354477080|ref|XP_003500750.1| PREDICTED: mineralocorticoid receptor [Cricetulus griseus]
Length = 980
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus
norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNR 57
RN YVCK +G C VD T RNQC+ACR KCL+V MN+
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNK 85
>gi|157133704|ref|XP_001662973.1| tailless (tll) [Aedes aegypti]
gi|108881478|gb|EAT45703.1| AAEL003020-PA [Aedes aegypti]
Length = 397
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK + C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 63 RSRQYVCKSKSETPCMVDKTHRNQCRACRLKKCFEVGMNKDAVQ 106
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 43 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 88
>gi|363730515|ref|XP_419081.3| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Gallus
gallus]
Length = 609
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 300 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 341
>gi|8248247|gb|AAF74116.1|AF225975_1 Tc-tailless [Tribolium castaneum]
Length = 302
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +YVCK + G CI+D T RNQC+ACR KC V MN+D +
Sbjct: 68 RNRQYVCKAKDEGSCIIDKTHRNQCRACRLKKCQNVGMNKDAVQ 111
>gi|291382905|ref|XP_002708195.1| PREDICTED: nuclear receptor subfamily 4, group A, member 3
[Oryctolagus cuniculus]
Length = 669
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 365 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 406
>gi|410956759|ref|XP_003985005.1| PREDICTED: mineralocorticoid receptor isoform 1 [Felis catus]
Length = 983
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|341877310|gb|EGT33245.1| hypothetical protein CAEBREN_31048 [Caenorhabditis brenneri]
Length = 715
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 10 GVVSC---QFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GVV+C + F R L EY C+ G+C+VD RN C+ CRF KC++V M+ R
Sbjct: 49 GVVTCFGCKGFFRRTLKRPSEYACRHNGNCVVDRHERNSCRYCRFKKCIEVGMDPKAVR 107
>gi|324520018|gb|ADY47539.1| Nuclear hormone receptor family member nhr-67, partial [Ascaris
suum]
Length = 313
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK RG C+VD T RNQC+ACR +KCL++ MN++ +
Sbjct: 53 RHRQYVCKNRGGGEEGKCLVDKTHRNQCRACRLTKCLEIGMNKEAVQ 99
>gi|301763180|ref|XP_002917011.1| PREDICTED: mineralocorticoid receptor-like isoform 1 [Ailuropoda
melanoleuca]
Length = 974
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|426246961|ref|XP_004017255.1| PREDICTED: mineralocorticoid receptor isoform 1 [Ovis aries]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 622 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|300797953|ref|NP_001178278.1| mineralocorticoid receptor [Bos taurus]
gi|296478785|tpg|DAA20900.1| TPA: nuclear receptor subfamily 3, group C, member 2-like [Bos
taurus]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 622 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|226817306|ref|NP_001152817.1| mineralocorticoid receptor [Gallus gallus]
Length = 981
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 621 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 670
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D +
Sbjct: 176 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKDAVQ 218
>gi|301758244|ref|XP_002914990.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 3-like [Ailuropoda melanoleuca]
Length = 658
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 354 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 395
>gi|30315970|sp|Q9N0W8.1|MCR_SAISC RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|7533169|gb|AAF63382.1|AF245224_1 mineralocorticoid receptor [Saimiri sciureus]
Length = 982
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN R
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLGARR 673
>gi|359320752|ref|XP_003639411.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 3 [Canis lupus familiaris]
Length = 999
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 695 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 736
>gi|344291739|ref|XP_003417589.1| PREDICTED: LOW QUALITY PROTEIN: mineralocorticoid receptor-like
[Loxodonta africana]
Length = 980
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 616 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 665
>gi|359321411|ref|XP_003639585.1| PREDICTED: mineralocorticoid receptor [Canis lupus familiaris]
Length = 973
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 617 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 666
>gi|3821745|emb|CAA09764.1| neuron-derived orphan receptor-1 beta [Sus scrofa]
Length = 446
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 339 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 380
>gi|325517507|gb|ADZ24980.1| glucocorticoid receptor 2 [Oryzias dancena]
Length = 780
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 440 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 494
>gi|291480649|gb|ADE06402.1| glucocorticoid receptor [Tautogolabrus adspersus]
Length = 771
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 431 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 485
>gi|99028943|ref|NP_001018547.2| glucocorticoid receptor [Danio rerio]
gi|90960708|dbj|BAE92737.1| similar to glucocorticoid receptor [Danio rerio]
gi|151177059|gb|ABR88075.1| glucocorticoid receptor alpha [Danio rerio]
gi|151335778|gb|ABS00394.1| glucocorticoid receptor [Danio rerio]
Length = 746
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 404 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 458
>gi|345315955|ref|XP_001507048.2| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Ornithorhynchus anatinus]
Length = 562
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 257 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 298
>gi|224062295|ref|XP_002195185.1| PREDICTED: nuclear receptor ROR-alpha [Taeniopygia guttata]
Length = 524
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 87 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 146
Query: 63 G 63
G
Sbjct: 147 G 147
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 1089 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 1137
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 6 CPDCGVVSCQFVFVRNLEYVCKERGH----CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CP + Q RN +YVCK RG C VD T RNQC+ACR KCL+ MN++ R
Sbjct: 50 CPFFPTLWVQRSIRRNRQYVCKARGAAANGCPVDKTHRNQCRACRLRKCLEAGMNKEAER 109
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C +D RNQCQ CRF KCL+V M R+V R
Sbjct: 98 RNLTYTCRANRNCPIDQHHRNQCQYCRFKKCLKVGMRREVQR 139
>gi|341880402|gb|EGT36337.1| hypothetical protein CAEBREN_17159 [Caenorhabditis brenneri]
Length = 418
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK +G C+VD T RNQC+ACR KCL++ MN+D
Sbjct: 50 RHRQYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLEIGMNKDA 94
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 219 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 261
>gi|112180673|gb|AAH95861.2| Nr3c1 protein [Danio rerio]
gi|197247261|gb|AAI64545.1| Nr3c1 protein [Danio rerio]
Length = 471
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN
Sbjct: 404 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMN 453
>gi|341894285|gb|EGT50220.1| CBN-NHR-67 protein [Caenorhabditis brenneri]
Length = 412
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK +G C+VD T RNQC+ACR KCL++ MN+D
Sbjct: 44 RHRQYVCKNKGGFDEGRCVVDKTHRNQCRACRLRKCLEIGMNKDA 88
>gi|219935425|emb|CAH03995.2| mineralocorticoid receptor [Cyprinus carpio]
Length = 971
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN---RDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN R +
Sbjct: 618 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMNLGARKSKK 675
Query: 62 LG 63
LG
Sbjct: 676 LG 677
>gi|157109777|ref|XP_001650818.1| Dissatisfaction (Dsf) [Aedes aegypti]
gi|108878920|gb|EAT43145.1| AAEL005381-PA, partial [Aedes aegypti]
Length = 723
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RN Y CK +G C VD T RNQC+ACR SKC Q MN+D
Sbjct: 39 RNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 81
>gi|449493888|ref|XP_002193091.2| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Taeniopygia guttata]
Length = 610
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 301 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 342
>gi|441619249|ref|XP_003257837.2| PREDICTED: mineralocorticoid receptor isoform 1 [Nomascus
leucogenys]
Length = 996
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 632 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 681
>gi|168275838|dbj|BAG10639.1| orphan nuclear receptor NR4A3 [synthetic construct]
Length = 626
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|6176566|gb|AAF05623.1|AF191212_1 orphan nuclear receptor TECdeltaC short isoform [Mus musculus]
Length = 429
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 323 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 364
>gi|126885|sp|P08235.1|MCR_HUMAN RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|307166|gb|AAA59571.1| mineralocorticoid receptor [Homo sapiens]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|402896849|ref|XP_003911496.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Papio anubis]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 374
>gi|397499981|ref|XP_003820708.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Pan
paniscus]
Length = 561
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 305 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 346
>gi|332832466|ref|XP_520150.3| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Pan troglodytes]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 374
>gi|297684971|ref|XP_002820080.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 3
[Pongo abelii]
Length = 626
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|297270523|ref|XP_001109185.2| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Macaca mulatta]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 374
>gi|297478017|ref|XP_002689787.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Bos
taurus]
gi|358413548|ref|XP_002684287.2| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Bos
taurus]
gi|296484634|tpg|DAA26749.1| TPA: nuclear receptor subfamily 4, group A, member 3 [Bos taurus]
Length = 648
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 344 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 385
>gi|27894361|ref|NP_775292.1| nuclear receptor subfamily 4 group A member 3 isoform b [Homo
sapiens]
gi|119579319|gb|EAW58915.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Homo sapiens]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 374
>gi|47523566|ref|NP_999412.1| neuron-derived orphan receptor-1 alfa [Sus scrofa]
gi|3821743|emb|CAA09763.1| neuron-derived orphan receptor-1 alfa [Sus scrofa]
Length = 643
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 339 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 380
>gi|410208336|gb|JAA01387.1| nuclear receptor subfamily 3, group C, member 2 [Pan troglodytes]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|395542565|ref|XP_003773197.1| PREDICTED: mineralocorticoid receptor isoform 1 [Sarcophilus
harrisii]
Length = 992
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 628 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|348582294|ref|XP_003476911.1| PREDICTED: mineralocorticoid receptor-like [Cavia porcellus]
Length = 980
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 618 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|327274009|ref|XP_003221771.1| PREDICTED: mineralocorticoid receptor-like, partial [Anolis
carolinensis]
Length = 990
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 631 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 680
>gi|324506749|gb|ADY42874.1| Nuclear hormone receptor family member nhr-31 [Ascaris suum]
Length = 721
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R L EY C+ +G+CIVD RN C+ CRF +CL+V M+ R
Sbjct: 63 CKGFFRRTLKRPTEYSCRHQGNCIVDRHERNSCRYCRFKRCLEVGMDPKAVR 114
>gi|291401145|ref|XP_002716957.1| PREDICTED: nuclear receptor subfamily 3, group C, member 2
[Oryctolagus cuniculus]
Length = 982
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|253314476|ref|NP_001156605.1| glucocorticoid receptor [Oryzias latipes]
gi|237858343|dbj|BAH59524.1| glucocorticoid receptor [Oryzias latipes]
Length = 777
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 491
>gi|194208405|ref|XP_001501712.2| PREDICTED: mineralocorticoid receptor isoform 1 [Equus caballus]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|193712543|ref|XP_001944711.1| PREDICTED: hypothetical protein LOC100162780 [Acyrthosiphon pisum]
Length = 728
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 393 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 452
Query: 50 CLQVKMNRDVTR 61
CLQV M ++V R
Sbjct: 453 CLQVGMVKEVVR 464
>gi|126331313|ref|XP_001366818.1| PREDICTED: mineralocorticoid receptor-like [Monodelphis domestica]
Length = 993
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 629 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 678
>gi|119625413|gb|EAX05008.1| nuclear receptor subfamily 3, group C, member 2 [Homo sapiens]
gi|306921281|dbj|BAJ17720.1| nuclear receptor subfamily 3, group C, member 2 [synthetic
construct]
Length = 984
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|2500913|sp|Q29131.1|MCR_TUPGB RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|1644386|emb|CAA99376.1| mineralocorticoid receptor [Tupaia belangeri]
Length = 977
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|345328716|ref|XP_001513606.2| PREDICTED: mineralocorticoid receptor-like [Ornithorhynchus
anatinus]
Length = 875
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 628 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|281347428|gb|EFB23012.1| hypothetical protein PANDA_012073 [Ailuropoda melanoleuca]
Length = 546
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 109 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 168
Query: 63 G 63
G
Sbjct: 169 G 169
>gi|405973035|gb|EKC37772.1| Retinoic acid receptor RXR-alpha-A [Crassostrea gigas]
Length = 413
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+NL Y CK G C+++ RN CQ CRF KC Q+ M R+ R
Sbjct: 107 KNLVYTCKNEGSCVINKFTRNNCQYCRFVKCTQMGMKREAVR 148
>gi|114596325|ref|XP_001150516.1| PREDICTED: mineralocorticoid receptor isoform 3 [Pan troglodytes]
gi|397489802|ref|XP_003815905.1| PREDICTED: mineralocorticoid receptor isoform 1 [Pan paniscus]
Length = 984
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|395823904|ref|XP_003785216.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Otolemur
garnettii]
Length = 631
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 327 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 368
>gi|363737943|ref|XP_413763.3| PREDICTED: nuclear receptor ROR-alpha [Gallus gallus]
Length = 524
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 87 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 146
Query: 63 G 63
G
Sbjct: 147 G 147
>gi|332222892|ref|XP_003260605.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Nomascus
leucogenys]
Length = 443
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|402585073|gb|EJW79013.1| tailless, partial [Wuchereria bancrofti]
Length = 312
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK RG C+VD T RNQC+ACR +KCL++ MN++
Sbjct: 41 RHRQYVCKNRGGGEEGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 85
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
R L Y C+ G C+VD RNQCQACR KC+Q+ MN+D
Sbjct: 187 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCMQMGMNKD 226
>gi|239923135|gb|ACS34897.1| mineralocorticoid receptor [Rutilus rutilus]
Length = 973
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN---RDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN R +
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMNLGARKSKK 677
Query: 62 LG 63
LG
Sbjct: 678 LG 679
>gi|4506577|ref|NP_002934.1| nuclear receptor ROR-alpha isoform c [Homo sapiens]
gi|451568|gb|AAA62660.1| RORalpha3 [Homo sapiens]
gi|119598001|gb|EAW77595.1| RAR-related orphan receptor A, isoform CRA_c [Homo sapiens]
Length = 548
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 111 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 170
Query: 63 G 63
G
Sbjct: 171 G 171
>gi|170589101|ref|XP_001899312.1| nuclear receptor NHR-67 [Brugia malayi]
gi|158593525|gb|EDP32120.1| nuclear receptor NHR-67, putative [Brugia malayi]
Length = 328
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK RG C+VD T RNQC+ACR +KCL++ MN++
Sbjct: 56 RHRQYVCKNRGGGEEGKCLVDKTHRNQCRACRLTKCLEIGMNKEA 100
>gi|158508572|ref|NP_000892.2| mineralocorticoid receptor isoform 1 [Homo sapiens]
gi|167882809|gb|ACA05923.1| nuclear receptor subfamily 3, group C, member 2 variant 1 [Homo
sapiens]
gi|239740366|gb|ACS13715.1| mineralocorticoid receptor [Homo sapiens]
Length = 984
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|449272865|gb|EMC82579.1| Nuclear receptor subfamily 4 group A member 3 [Columba livia]
Length = 609
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 300 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 341
>gi|444518684|gb|ELV12319.1| Nuclear receptor subfamily 4 group A member 3 [Tupaia chinensis]
Length = 641
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 337 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 378
>gi|402896847|ref|XP_003911495.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Papio anubis]
Length = 626
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|27894355|ref|NP_008912.2| nuclear receptor subfamily 4 group A member 3 isoform a [Homo
sapiens]
gi|90110039|sp|Q92570.3|NR4A3_HUMAN RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Mitogen-induced nuclear orphan receptor;
AltName: Full=Neuron-derived orphan receptor 1; AltName:
Full=Nuclear hormone receptor NOR-1
gi|60814310|gb|AAX36295.1| nuclear receptor subfamily 4 group A member 3 [synthetic construct]
gi|119579321|gb|EAW58917.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_c
[Homo sapiens]
gi|119579322|gb|EAW58918.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_c
[Homo sapiens]
Length = 626
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|410042950|ref|XP_003951532.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 1
[Pan troglodytes]
Length = 626
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|403298735|ref|XP_003940164.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Saimiri
boliviensis boliviensis]
Length = 635
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 331 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 372
>gi|297270521|ref|XP_002800077.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 2
[Macaca mulatta]
gi|297270525|ref|XP_002800078.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 isoform 3
[Macaca mulatta]
Length = 626
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|417405505|gb|JAA49462.1| Putative mineralocorticoid receptor [Desmodus rotundus]
Length = 980
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 618 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 667
>gi|410913960|ref|XP_003970456.1| PREDICTED: glucocorticoid receptor-like isoform 2 [Takifugu
rubripes]
Length = 774
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 433 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 487
>gi|348502792|ref|XP_003438951.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Oreochromis niloticus]
Length = 575
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC C VD RRN+CQ CRF KCL V M R+V R
Sbjct: 270 KNSKYVCLSNKECPVDKRRRNRCQFCRFQKCLAVGMVREVVR 311
>gi|431909857|gb|ELK12959.1| Nuclear receptor subfamily 4 group A member 3 [Pteropus alecto]
Length = 633
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 329 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 370
>gi|390458196|ref|XP_002743183.2| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Callithrix jacchus]
Length = 968
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 664 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 705
>gi|1651191|dbj|BAA11419.1| neuron derived orphan receptor [Homo sapiens]
Length = 626
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|924282|gb|AAB02581.1| mitogen induced nuclear orphan receptor [Homo sapiens]
Length = 587
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 283 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 324
>gi|94717657|sp|Q3YC04.1|MCR_AOTNA RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|72537229|gb|AAZ73615.1| mineralocorticoid receptor [Aotus nancymaae]
Length = 984
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|410956761|ref|XP_003985006.1| PREDICTED: mineralocorticoid receptor isoform 2 [Felis catus]
Length = 867
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|426362505|ref|XP_004048402.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Gorilla
gorilla gorilla]
Length = 573
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 269 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 310
>gi|426246963|ref|XP_004017256.1| PREDICTED: mineralocorticoid receptor isoform 2 [Ovis aries]
Length = 869
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 622 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 671
>gi|110810430|sp|Q4JM28.1|MCR_SAIBB RecName: Full=Mineralocorticoid receptor; Short=MR; AltName:
Full=Nuclear receptor subfamily 3 group C member 2
gi|68161554|gb|AAY87140.1| mineralocorticoid receptor [Saimiri boliviensis]
Length = 982
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|31324673|gb|AAP48590.1| mineralocorticoid receptor [Callithrix jacchus]
Length = 983
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|403272367|ref|XP_003928037.1| PREDICTED: mineralocorticoid receptor isoform 1 [Saimiri
boliviensis boliviensis]
gi|403272369|ref|XP_003928038.1| PREDICTED: mineralocorticoid receptor isoform 2 [Saimiri
boliviensis boliviensis]
Length = 982
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|327275047|ref|XP_003222285.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like,
partial [Anolis carolinensis]
Length = 614
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 305 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 346
>gi|149020213|gb|EDL78202.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_b
[Rattus norvegicus]
Length = 430
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 324 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 365
>gi|62087692|dbj|BAD92293.1| nuclear receptor subfamily 3, group C, member 2 variant [Homo
sapiens]
Length = 853
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 489 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 538
>gi|7657397|ref|NP_056558.1| nuclear receptor subfamily 4 group A member 3 [Mus musculus]
gi|46577133|sp|Q9QZB6.1|NR4A3_MOUSE RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Orphan nuclear receptor TEC; AltName:
Full=Translocated in extraskeletal chondrosarcoma
gi|6176564|gb|AAF05622.1|AF191211_1 orphan nuclear receptor TEC long isoform [Mus musculus]
gi|148670400|gb|EDL02347.1| nuclear receptor subfamily 4, group A, member 3 [Mus musculus]
gi|151555221|gb|AAI48437.1| Nuclear receptor subfamily 4, group A, member 3 [synthetic
construct]
gi|162319212|gb|AAI56737.1| Nuclear receptor subfamily 4, group A, member 3 [synthetic
construct]
Length = 627
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 323 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 364
>gi|94540532|gb|ABF30967.1| glucocorticoid receptor [Sparus aurata]
Length = 784
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 444 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 498
>gi|47214408|emb|CAG00249.1| unnamed protein product [Tetraodon nigroviridis]
Length = 404
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK +G C++D RNQCQ CRF KC+ V M D+
Sbjct: 34 CKGFFRRTIQKNLNPTYACKYQGKCVIDKVTRNQCQECRFKKCIAVGMATDL 85
>gi|395515403|ref|XP_003761894.1| PREDICTED: nuclear receptor subfamily 4 group A member 3
[Sarcophilus harrisii]
Length = 756
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 447 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLNVGMVKEVVR 488
>gi|258406873|gb|AAX18925.2| glucocorticoid receptor [Acanthopagrus schlegelii]
Length = 779
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 439 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 493
>gi|151177061|gb|ABR88076.1| glucocorticoid receptor beta [Danio rerio]
Length = 737
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 404 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 458
>gi|395822270|ref|XP_003784444.1| PREDICTED: nuclear receptor ROR-alpha [Otolemur garnettii]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|322688179|gb|ADX07108.1| glucocorticoid receptor 1 [Odontesthes bonariensis]
Length = 744
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 404 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 458
>gi|7305439|ref|NP_038674.1| nuclear receptor ROR-alpha [Mus musculus]
gi|1710637|sp|P51448.1|RORA_MOUSE RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|1289326|gb|AAC52513.1| ROR-alpha 1 [Mus musculus]
gi|148694214|gb|EDL26161.1| RAR-related orphan receptor alpha [Mus musculus]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|19743903|ref|NP_599023.1| nuclear receptor ROR-alpha isoform a [Homo sapiens]
gi|114657409|ref|XP_001173408.1| PREDICTED: nuclear receptor ROR-alpha isoform 6 [Pan troglodytes]
gi|451564|gb|AAA62658.1| RORalpha1 [Homo sapiens]
gi|14250724|gb|AAH08831.1| RAR-related orphan receptor A [Homo sapiens]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|403274571|ref|XP_003929048.1| PREDICTED: nuclear receptor ROR-alpha [Saimiri boliviensis
boliviensis]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|397515460|ref|XP_003827969.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pan paniscus]
Length = 516
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 79 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 138
Query: 63 G 63
G
Sbjct: 139 G 139
>gi|395746802|ref|XP_003778512.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pongo abelii]
Length = 516
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 79 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 138
Query: 63 G 63
G
Sbjct: 139 G 139
>gi|300797466|ref|NP_001179790.1| nuclear receptor ROR-alpha [Bos taurus]
gi|296483252|tpg|DAA25367.1| TPA: RAR-related orphan receptor A [Bos taurus]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|124504622|gb|AAI28309.1| Nr4a3 protein [Mus musculus]
Length = 625
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 321 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 362
>gi|124504620|gb|AAI28308.1| Nr4a3 protein [Mus musculus]
Length = 625
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 321 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 362
>gi|13994173|ref|NP_113816.1| nuclear receptor subfamily 4 group A member 3 [Rattus norvegicus]
gi|1709332|sp|P51179.1|NR4A3_RAT RecName: Full=Nuclear receptor subfamily 4 group A member 3;
AltName: Full=Neuron-derived orphan receptor 1/2;
AltName: Full=Nuclear hormone receptor NOR-1/NOR-2
gi|643600|dbj|BAA07535.1| NOR-1 [Rattus norvegicus]
gi|82393809|gb|ABB72200.1| neuron-derived orphan receptor 1 [Rattus norvegicus]
gi|149020211|gb|EDL78200.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Rattus norvegicus]
gi|149020212|gb|EDL78201.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_a
[Rattus norvegicus]
Length = 628
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 324 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 365
>gi|1065886|emb|CAA59993.1| neuron-derived orphan receptor [Rattus norvegicus]
gi|1583604|prf||2121281A NOR-2 protein
Length = 430
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 324 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 365
>gi|324021679|ref|NP_001191191.1| glucocorticoid receptor isoform alpha-D1 [Homo sapiens]
Length = 462
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 123 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 177
>gi|119579320|gb|EAW58916.1| nuclear receptor subfamily 4, group A, member 3, isoform CRA_b
[Homo sapiens]
Length = 454
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 374
>gi|402874468|ref|XP_003901059.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Papio anubis]
Length = 515
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 78 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 137
Query: 63 G 63
G
Sbjct: 138 G 138
>gi|216409696|dbj|BAH02285.1| retinoid-related orphan receptor alpha [Homo sapiens]
Length = 523
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E C++D +RN+CQ CR+ KCLQ+ M R+ +
Sbjct: 112 KDLTYACREDRQCLIDKRQRNRCQYCRYQKCLQMGMKREAVQ 153
>gi|395834535|ref|XP_003790255.1| PREDICTED: mineralocorticoid receptor [Otolemur garnettii]
Length = 867
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|395746808|ref|XP_003778514.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pongo abelii]
Length = 525
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 88 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 147
Query: 63 G 63
G
Sbjct: 148 G 148
>gi|148224443|ref|NP_001084074.1| mineralocorticoid receptor [Xenopus laevis]
gi|51703904|gb|AAH81082.1| Nr3c2 protein [Xenopus laevis]
Length = 979
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 617 CG--SCKVFFKRAVEGQHSYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 666
>gi|426379299|ref|XP_004056338.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Gorilla gorilla
gorilla]
Length = 525
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 88 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 147
Query: 63 G 63
G
Sbjct: 148 G 148
>gi|410913958|ref|XP_003970455.1| PREDICTED: glucocorticoid receptor-like isoform 1 [Takifugu
rubripes]
Length = 775
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 434 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 488
>gi|380792335|gb|AFE68043.1| mineralocorticoid receptor isoform 1, partial [Macaca mulatta]
Length = 704
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|359321413|ref|XP_003432094.2| PREDICTED: mineralocorticoid receptor isoform 1 [Canis lupus
familiaris]
Length = 864
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 617 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 666
>gi|345323218|ref|XP_001506671.2| PREDICTED: nuclear receptor ROR-beta [Ornithorhynchus anatinus]
Length = 688
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 252 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 311
Query: 63 G 63
G
Sbjct: 312 G 312
>gi|301763182|ref|XP_002917012.1| PREDICTED: mineralocorticoid receptor-like isoform 2 [Ailuropoda
melanoleuca]
Length = 867
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|66737265|gb|AAT02177.1| glucocorticoid receptor [Pimephales promelas]
Length = 745
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 404 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 458
>gi|328710767|ref|XP_001952732.2| PREDICTED: ecdysone-induced protein 78C-like [Acyrthosiphon pisum]
Length = 570
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV SC+ F R +EY C G C+V RN+CQ CRF KCL V M+RD R
Sbjct: 164 GVTSCEGCKGFFRRSIQKQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLTVGMSRDSVRY 223
Query: 63 G 63
G
Sbjct: 224 G 224
>gi|338722497|ref|XP_003364551.1| PREDICTED: mineralocorticoid receptor isoform 2 [Equus caballus]
Length = 867
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|334333054|ref|XP_001372755.2| PREDICTED: nuclear receptor ROR-beta [Monodelphis domestica]
Length = 505
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 89 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 148
Query: 63 G 63
G
Sbjct: 149 G 149
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
++L Y C++ C++D +RN+CQ CR+ KCL + M R+VT
Sbjct: 177 KDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREVT 217
>gi|47229684|emb|CAG06880.1| unnamed protein product [Tetraodon nigroviridis]
Length = 621
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDEALI 82
Query: 63 GFWYPS 68
+W S
Sbjct: 83 RWWASS 88
>gi|397515466|ref|XP_003827972.1| PREDICTED: nuclear receptor ROR-alpha isoform 4 [Pan paniscus]
Length = 525
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 88 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 147
Query: 63 G 63
G
Sbjct: 148 G 148
>gi|351698410|gb|EHB01329.1| Nuclear receptor ROR-alpha [Heterocephalus glaber]
Length = 571
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 135 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 194
Query: 63 G 63
G
Sbjct: 195 G 195
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C VD T RNQC+ACR +KC Q MN+D +
Sbjct: 49 RNRIYTCKATGDLKGRCPVDKTHRNQCRACRLAKCFQSAMNKDAVQ 94
>gi|130493601|ref|NP_001076288.1| RAR-related orphan receptor C a [Danio rerio]
gi|126508457|gb|ABO15414.1| retinoid-related orphan receptor c [Danio rerio]
Length = 479
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +CI+D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|27894359|ref|NP_775291.1| nuclear receptor subfamily 4 group A member 3 isoform c [Homo
sapiens]
gi|1165105|emb|CAA61984.1| nuclear receptor [Homo sapiens]
gi|1586174|prf||2203316A TEC gene
Length = 443
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 253 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 301
>gi|432908547|ref|XP_004077915.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
isoform 2 [Oryzias latipes]
Length = 596
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 282 KNAKYVCLASKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 323
>gi|432908545|ref|XP_004077914.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
isoform 1 [Oryzias latipes]
Length = 590
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 282 KNAKYVCLASKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 323
>gi|363743762|ref|XP_003642912.1| PREDICTED: nuclear receptor ROR-beta-like [Gallus gallus]
Length = 540
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|324021681|ref|NP_001191192.1| glucocorticoid receptor isoform alpha-D2 [Homo sapiens]
Length = 447
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 108 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 162
>gi|355707903|gb|AES03101.1| nuclear receptor subfamily 3, group C, member 1 [Mustela putorius
furo]
Length = 456
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 118 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 172
>gi|126723281|ref|NP_001075616.1| glucocorticoid receptor [Oryctolagus cuniculus]
gi|30315816|sp|P59667.1|GCR_RABIT RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|26000753|gb|AAN75442.1| glucocorticoid receptor alpha [Oryctolagus cuniculus]
Length = 772
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R ++ Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 433 CG--SCKVFFKRAVKGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 487
>gi|348516240|ref|XP_003445647.1| PREDICTED: nuclear receptor ROR-beta [Oreochromis niloticus]
Length = 481
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 32 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 91
Query: 63 G 63
G
Sbjct: 92 G 92
>gi|327279825|ref|XP_003224656.1| PREDICTED: nuclear receptor subfamily 4 group A member 2-like
[Anolis carolinensis]
Length = 638
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 333 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLAVGMVKEVVR 374
>gi|308495754|ref|XP_003110065.1| CRE-NHR-119 protein [Caenorhabditis remanei]
gi|308244902|gb|EFO88854.1| CRE-NHR-119 protein [Caenorhabditis remanei]
Length = 723
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 10 GVVSC---QFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GVV+C + F R L EY C+ G+C+VD RN C+ CRF KC+ V M+ R
Sbjct: 37 GVVTCFGCKGFFRRTLKRPSEYTCRHNGNCVVDRHERNSCRYCRFKKCIDVGMDPKAVR 95
>gi|312119609|ref|XP_003151713.1| hypothetical protein LOAG_16177 [Loa loa]
gi|307753122|gb|EFO12356.1| hypothetical protein LOAG_16177, partial [Loa loa]
Length = 134
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+ +EYVC ++G+CIVD RN+CQ+CRF KCLQ+ M +++
Sbjct: 95 KKIEYVCYKQGNCIVDQKNRNRCQSCRFQKCLQLGMRQEL 134
>gi|19743901|ref|NP_599022.1| nuclear receptor ROR-alpha isoform b [Homo sapiens]
gi|548814|sp|P35398.1|RORA_HUMAN RecName: Full=Nuclear receptor ROR-alpha; AltName: Full=Nuclear
receptor RZR-alpha; AltName: Full=Nuclear receptor
subfamily 1 group F member 1; AltName:
Full=Retinoid-related orphan receptor-alpha
gi|451566|gb|AAA62659.1| RORalpha2 [Homo sapiens]
gi|119598002|gb|EAW77596.1| RAR-related orphan receptor A, isoform CRA_d [Homo sapiens]
Length = 556
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 119 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 178
Query: 63 G 63
G
Sbjct: 179 G 179
>gi|327263554|ref|XP_003216584.1| PREDICTED: nuclear receptor ROR-beta-like [Anolis carolinensis]
Length = 540
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 104 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 163
Query: 63 G 63
G
Sbjct: 164 G 164
>gi|114596329|ref|XP_001150320.1| PREDICTED: mineralocorticoid receptor isoform 1 [Pan troglodytes]
gi|397489804|ref|XP_003815906.1| PREDICTED: mineralocorticoid receptor isoform 2 [Pan paniscus]
Length = 867
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|326926497|ref|XP_003209436.1| PREDICTED: nuclear receptor ROR-alpha-like [Meleagris gallopavo]
Length = 543
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 106 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 165
Query: 63 G 63
G
Sbjct: 166 G 166
>gi|241632867|ref|XP_002410392.1| nuclear receptor, putative [Ixodes scapularis]
gi|215503411|gb|EEC12905.1| nuclear receptor, putative [Ixodes scapularis]
Length = 359
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
+ +EY C G C+V RN+CQ CRF KCL V M+RD R G
Sbjct: 9 KQIEYRCLRDGKCLVIRLNRNRCQYCRFKKCLAVGMSRDSVRYG 52
>gi|84627440|gb|AAI11759.1| NR3C2 protein [Homo sapiens]
Length = 867
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|395542567|ref|XP_003773198.1| PREDICTED: mineralocorticoid receptor isoform 2 [Sarcophilus
harrisii]
Length = 875
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 628 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|332025033|gb|EGI65220.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 443
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 21 NLEYVCK----ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
N EY+CK ++G C +D T RNQC+ACR +KC + MN+D +
Sbjct: 40 NREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANMNKDAVQ 84
>gi|154240734|ref|NP_001093873.1| mineralocorticoid receptor [Danio rerio]
gi|151335780|gb|ABS00395.1| mineralocorticoid receptor [Danio rerio]
Length = 970
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN---RDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN R +
Sbjct: 618 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMNLGARKSKK 675
Query: 62 LG 63
LG
Sbjct: 676 LG 677
>gi|327284516|ref|XP_003226983.1| PREDICTED: nuclear receptor ROR-alpha-like [Anolis carolinensis]
Length = 609
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
N Y C + +C++D T RN+CQ CR KCL V M+RD + G
Sbjct: 190 NATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFG 232
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 116 KDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 157
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 117 KDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 158
>gi|332105458|gb|AEE01362.1| ecdysone-induced protein 78c [Haliotis diversicolor]
Length = 469
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV SC+ F R +EY C G C+V RN+CQ CRF KCL V M+RD R
Sbjct: 110 GVTSCEGCKGFFRRSIQKQIEYRCLRDGKCMVIRLNRNRCQYCRFKKCLAVGMSRDSVRY 169
Query: 63 G 63
G
Sbjct: 170 G 170
>gi|324021683|ref|NP_001191193.1| glucocorticoid receptor isoform alpha-D3 [Homo sapiens]
Length = 442
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 103 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 157
>gi|260656020|ref|NP_001159576.1| mineralocorticoid receptor isoform 2 [Homo sapiens]
gi|167882810|gb|ACA05924.1| nuclear receptor subfamily 3, group C, member 2 variant 2 [Homo
sapiens]
gi|239740367|gb|ACS13716.1| mineralocorticoid receptor 1 [Homo sapiens]
Length = 867
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 116 KDLSYACREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQ 157
>gi|334333364|ref|XP_003341711.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Monodelphis domestica]
Length = 782
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 473 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLNVGMVKEVVR 514
>gi|441616023|ref|XP_004088336.1| PREDICTED: nuclear receptor ROR-alpha [Nomascus leucogenys]
Length = 493
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 56 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 115
Query: 63 G 63
G
Sbjct: 116 G 116
>gi|397515462|ref|XP_003827970.1| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan paniscus]
Length = 524
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 87 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 146
Query: 63 G 63
G
Sbjct: 147 G 147
>gi|395746804|ref|XP_002825560.2| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Pongo abelii]
Length = 524
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 87 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 146
Query: 63 G 63
G
Sbjct: 147 G 147
>gi|395502591|ref|XP_003755662.1| PREDICTED: nuclear receptor ROR-alpha [Sarcophilus harrisii]
Length = 538
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 101 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 160
Query: 63 G 63
G
Sbjct: 161 G 161
>gi|345795020|ref|XP_535503.3| PREDICTED: nuclear receptor ROR-alpha [Canis lupus familiaris]
Length = 523
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|119597999|gb|EAW77593.1| RAR-related orphan receptor A, isoform CRA_a [Homo sapiens]
Length = 467
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 30 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 89
Query: 63 G 63
G
Sbjct: 90 G 90
>gi|1619314|emb|CAA69930.1| nuclear orphan receptor ROR-alpha 4 [Mus musculus]
Length = 459
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|402874466|ref|XP_003901058.1| PREDICTED: nuclear receptor ROR-alpha isoform 1 [Papio anubis]
Length = 468
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|325495551|gb|ADZ17381.1| thyroid hormone nuclear receptor alpha [Homo sapiens]
Length = 467
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|301616152|ref|XP_002937524.1| PREDICTED: nuclear receptor ROR-alpha-like [Xenopus (Silurana)
tropicalis]
Length = 464
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|440905024|gb|ELR55472.1| Nuclear receptor subfamily 4 group A member 3 [Bos grunniens mutus]
Length = 546
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 242 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 283
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
R L Y C+ G CIVD RNQCQACR KCL + MN+DV L
Sbjct: 113 RKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLAMGMNKDVIILA 157
>gi|19743905|ref|NP_599024.1| nuclear receptor ROR-alpha isoform d [Homo sapiens]
gi|335279592|ref|XP_001928189.3| PREDICTED: nuclear receptor ROR-alpha [Sus scrofa]
gi|71680298|gb|AAI00990.1| RAR-related orphan receptor A [Homo sapiens]
gi|71681741|gb|AAI00989.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533311|gb|AAI00988.1| RAR-related orphan receptor A [Homo sapiens]
gi|72533486|gb|AAI00991.1| RAR-related orphan receptor A [Homo sapiens]
gi|119598000|gb|EAW77594.1| RAR-related orphan receptor A, isoform CRA_b [Homo sapiens]
gi|325495447|gb|ADZ17329.1| thyroid hormone nuclear receptor alpha variant 4 [Homo sapiens]
gi|410218696|gb|JAA06567.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410255712|gb|JAA15823.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410306084|gb|JAA31642.1| RAR-related orphan receptor A [Pan troglodytes]
gi|410352249|gb|JAA42728.1| RAR-related orphan receptor A [Pan troglodytes]
Length = 468
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|297296572|ref|XP_001100971.2| PREDICTED: nuclear receptor ROR-alpha-like isoform 2 [Macaca
mulatta]
Length = 468
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 105 RKLIYRCQAGTGMCLVDKAHRNQCQACRLKKCLQMGMNKDAVQ 147
>gi|351699362|gb|EHB02281.1| Nuclear receptor subfamily 4 group A member 3, partial
[Heterocephalus glaber]
Length = 570
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 266 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 307
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 180 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 222
>gi|332843955|ref|XP_001173382.2| PREDICTED: nuclear receptor ROR-alpha isoform 2 [Pan troglodytes]
Length = 460
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|2570170|dbj|BAA22970.1| mROR4 [Mus caroli]
gi|9653297|gb|AAB46801.2| orphan nuclear receptor [Mus sp.]
Length = 466
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 30 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 89
Query: 63 G 63
G
Sbjct: 90 G 90
>gi|402874470|ref|XP_003901060.1| PREDICTED: nuclear receptor ROR-alpha isoform 3 [Papio anubis]
Length = 524
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 87 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 146
Query: 63 G 63
G
Sbjct: 147 G 147
>gi|269785035|ref|NP_001161669.1| thyroid hormone receptor [Saccoglossus kowalevskii]
gi|268054363|gb|ACY92668.1| thyroid hormone receptor [Saccoglossus kowalevskii]
Length = 381
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+NL Y CK CI+D T RNQCQ CR+ KCL V M D+
Sbjct: 59 KNLSYYCKWNEECIIDKTTRNQCQQCRYKKCLAVGMAPDL 98
>gi|76161567|gb|ABA40754.1| glucocorticoid receptor [Canis lupus familiaris]
Length = 441
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 102 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 156
>gi|301607929|ref|XP_002933547.1| PREDICTED: mineralocorticoid receptor-like [Xenopus (Silurana)
tropicalis]
Length = 905
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHSYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 141 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 189
>gi|313228671|emb|CBY07463.1| unnamed protein product [Oikopleura dioica]
Length = 578
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQF--VFVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
G+++C+ F R N Y C G C+VD T RN+CQACR KCL + M+RD +
Sbjct: 55 GIITCEGCKGFFRRSQQNNARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRDAVKF 114
Query: 63 G 63
G
Sbjct: 115 G 115
>gi|349096|gb|AAA42095.1| transcription factor, partial [Rattus norvegicus]
Length = 483
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 47 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 106
Query: 63 G 63
G
Sbjct: 107 G 107
>gi|390339466|ref|XP_781794.3| PREDICTED: nuclear receptor subfamily 1 group D member 1-like
[Strongylocentrotus purpuratus]
Length = 547
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
G++SC+ R EYVC G C + RN+C ACR+ KCL++ M++D R+
Sbjct: 104 GIISCEGCKGFFRRCLRRQKEYVCVRGGKCEISRQHRNRCPACRYKKCLELGMSKDAVRI 163
Query: 63 G 63
G
Sbjct: 164 G 164
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65
++L Y C++ C+VD +RN+CQ CR+ KCL + M R+V + W
Sbjct: 120 KDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREVIKHVKW 165
>gi|296213374|ref|XP_002753242.1| PREDICTED: nuclear receptor ROR-alpha [Callithrix jacchus]
Length = 468
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|45384158|ref|NP_990424.1| nuclear receptor ROR-beta [Gallus gallus]
gi|1619285|emb|CAA69928.1| nuclear orphan receptor ROR-beta [Gallus gallus]
Length = 459
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|449269569|gb|EMC80331.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 461
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 25 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 84
Query: 63 G 63
G
Sbjct: 85 G 85
>gi|224088946|ref|XP_002190992.1| PREDICTED: nuclear receptor ROR-beta [Taeniopygia guttata]
Length = 458
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|130490232|ref|NP_001076325.1| nuclear receptor ROR-beta [Danio rerio]
gi|126508455|gb|ABO15413.1| retinoid-related orphan receptor b [Danio rerio]
Length = 466
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ GHC++D RNQCQACR KCLQ+ MN+D +
Sbjct: 54 RRLIYRCQAGSGHCVIDKAHRNQCQACRLKKCLQMGMNKDAVQ 96
>gi|260790073|ref|XP_002590068.1| hypothetical protein BRAFLDRAFT_123436 [Branchiostoma floridae]
gi|229275256|gb|EEN46079.1| hypothetical protein BRAFLDRAFT_123436 [Branchiostoma floridae]
Length = 2020
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+NL Y CK GHC ++ RN CQ+CRF KC+ M ++ R
Sbjct: 1699 KNLSYKCKGEGHCEINKFTRNNCQSCRFQKCMDNGMKKEAVR 1740
>gi|440899103|gb|ELR50468.1| Nuclear receptor ROR-alpha, partial [Bos grunniens mutus]
Length = 468
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|1869971|emb|CAB05396.1| nuclear orphan receptor/transcription factor [Mus musculus]
gi|74143434|dbj|BAE28797.1| unnamed protein product [Mus musculus]
gi|74214884|dbj|BAE33451.1| unnamed protein product [Mus musculus]
Length = 467
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 30 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 89
Query: 63 G 63
G
Sbjct: 90 G 90
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D
Sbjct: 141 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKD 180
>gi|94467591|dbj|BAE93688.1| RAR related orphan receptor beta [Mus musculus]
Length = 459
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|193211376|ref|NP_001123209.1| nuclear receptor ROR-beta [Ovis aries]
gi|152940827|gb|ABS44878.1| retinoid-related orphan receptor beta [Ovis aries]
Length = 459
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|348241|gb|AAA02963.1| transcription factor [Homo sapiens]
Length = 468
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|344293479|ref|XP_003418450.1| PREDICTED: nuclear receptor ROR-alpha-like [Loxodonta africana]
Length = 496
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 59 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 118
Query: 63 G 63
G
Sbjct: 119 G 119
>gi|296802130|gb|ADH51563.1| retinoic acid-related orphan receptor alpha isoform 1 [Capra
hircus]
Length = 459
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 22 GVITCEGCKGFCRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 81
Query: 63 G 63
G
Sbjct: 82 G 82
>gi|133777005|gb|AAH03757.2| Rora protein [Mus musculus]
Length = 460
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|449266386|gb|EMC77439.1| Nuclear receptor ROR-alpha, partial [Columba livia]
Length = 468
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|432874724|ref|XP_004072561.1| PREDICTED: nuclear receptor ROR-beta-like [Oryzias latipes]
Length = 472
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|387966311|gb|AFK14017.1| glucocorticoid receptor 2a [Pantodon buchholzi]
Length = 761
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 409 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 466
Query: 56 NRDVTR 61
N + +
Sbjct: 467 NLEARK 472
>gi|354503278|ref|XP_003513708.1| PREDICTED: nuclear receptor ROR-alpha, partial [Cricetulus
griseus]
Length = 473
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 36 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 95
Query: 63 G 63
G
Sbjct: 96 G 96
>gi|348555499|ref|XP_003463561.1| PREDICTED: nuclear receptor ROR-alpha [Cavia porcellus]
Length = 478
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 41 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 100
Query: 63 G 63
G
Sbjct: 101 G 101
>gi|348527034|ref|XP_003451024.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like
[Oreochromis niloticus]
Length = 589
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 283 KNAKYVCLASKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 324
>gi|297595166|gb|ADI48099.1| glucocorticoid hormone receptor a long isoform [Sciaenops
ocellatus]
Length = 796
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 454 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 511
Query: 56 NRDVTR 61
N + +
Sbjct: 512 NLEARK 517
>gi|300675596|gb|ADK26460.1| retinoic acid-related orphan receptor alpha isoform 2 [Capra
hircus]
Length = 468
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 31 GVITCEGCKGFCRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|281344010|gb|EFB19594.1| hypothetical protein PANDA_014042 [Ailuropoda melanoleuca]
Length = 459
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|239582562|dbj|BAH70337.1| glucocorticoid receptor [Anguilla japonica]
Length = 735
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 386 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 443
Query: 56 NRDVTR 61
N + +
Sbjct: 444 NLEARK 449
>gi|20563135|gb|AAM27889.1|AF263740_1 glucocorticoid receptor isoform 2b [Haplochromis burtoni]
Length = 802
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 456 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 513
Query: 56 NRDVTR 61
N + +
Sbjct: 514 NLEARK 519
>gi|355687647|gb|EHH26231.1| hypothetical protein EGK_16147 [Macaca mulatta]
gi|355749609|gb|EHH54008.1| hypothetical protein EGM_14739 [Macaca fascicularis]
Length = 706
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|185135381|ref|NP_001118212.1| mineralocorticoid receptor form B [Oncorhynchus mykiss]
gi|53766437|gb|AAS75843.1| mineralocorticoid receptor form B [Oncorhynchus mykiss]
Length = 1038
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 673 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMN 722
>gi|410978155|ref|XP_003995462.1| PREDICTED: nuclear receptor ROR-beta [Felis catus]
Length = 459
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|313225640|emb|CBY07114.1| unnamed protein product [Oikopleura dioica]
Length = 494
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 6 CPDCGVV------------SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSK 49
CP CG V SC+ F R N Y C G C + T R +C +CR+ K
Sbjct: 114 CPVCGDVVSGYHYGILSCESCKGFFKRIVQLNKRYFCSNHGQCTITKTTRKKCSSCRYDK 173
Query: 50 CLQVKMNRDVTRLG 63
C+ + M R+ RLG
Sbjct: 174 CITLGMKREALRLG 187
>gi|193201685|gb|ACF16007.1| estrogen receptor [Branchiostoma floridae]
Length = 705
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 14 CQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R+++ Y+C C +D RR CQACR+ KCL V M +D R G
Sbjct: 317 CKAFFKRSIQQGQTDYICPGTNQCTIDRNRRKSCQACRYRKCLMVGMTKDGRRSG 371
>gi|268529532|ref|XP_002629892.1| C. briggsae CBR-NHR-23 protein [Caenorhabditis briggsae]
Length = 597
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +CIVD RN+CQ CR KC+++ M+RD +
Sbjct: 180 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCIVDRVNRNRCQYCRLKKCIELGMSRDAVKF 239
Query: 63 G 63
G
Sbjct: 240 G 240
>gi|355567588|gb|EHH23929.1| Nuclear hormone receptor NOR-1 [Macaca mulatta]
Length = 524
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 220 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 261
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G PS
Sbjct: 102 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRLPPS 150
>gi|350579326|ref|XP_003480585.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor ROR-beta-like
[Sus scrofa]
Length = 524
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|301778497|ref|XP_002924666.1| PREDICTED: nuclear receptor ROR-beta-like [Ailuropoda melanoleuca]
Length = 478
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 42 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 101
Query: 63 G 63
G
Sbjct: 102 G 102
>gi|301775172|ref|XP_002923008.1| PREDICTED: nuclear receptor ROR-alpha-like [Ailuropoda melanoleuca]
Length = 509
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 72 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 131
Query: 63 G 63
G
Sbjct: 132 G 132
>gi|293344662|ref|XP_002725756.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Rattus
norvegicus]
gi|293356460|ref|XP_002728915.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus
norvegicus]
Length = 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|148709623|gb|EDL41569.1| RAR-related orphan receptor beta, isoform CRA_a [Mus musculus]
Length = 474
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 38 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 97
Query: 63 G 63
G
Sbjct: 98 G 98
>gi|19743907|ref|NP_008845.2| nuclear receptor ROR-beta [Homo sapiens]
gi|386781838|ref|NP_001247680.1| nuclear receptor ROR-beta [Macaca mulatta]
gi|114625038|ref|XP_001144112.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Pan troglodytes]
gi|397503245|ref|XP_003822240.1| PREDICTED: nuclear receptor ROR-beta [Pan paniscus]
gi|402897652|ref|XP_003911863.1| PREDICTED: nuclear receptor ROR-beta [Papio anubis]
gi|426362023|ref|XP_004048182.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Gorilla gorilla
gorilla]
gi|62022574|gb|AAH51830.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739507|gb|AAH93774.1| RAR-related orphan receptor B [Homo sapiens]
gi|62739746|gb|AAH93772.1| RAR-related orphan receptor B [Homo sapiens]
gi|119582956|gb|EAW62552.1| RAR-related orphan receptor B [Homo sapiens]
gi|167773493|gb|ABZ92181.1| RAR-related orphan receptor B [synthetic construct]
gi|189066675|dbj|BAG36222.1| unnamed protein product [Homo sapiens]
gi|307685949|dbj|BAJ20905.1| RAR-related orphan receptor B [synthetic construct]
gi|325495575|gb|ADZ17393.1| RAR-related orphan receptor beta [Homo sapiens]
gi|380783487|gb|AFE63619.1| nuclear receptor ROR-beta [Macaca mulatta]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|449279574|gb|EMC87146.1| Nuclear receptor ROR-beta, partial [Columba livia]
Length = 466
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 24 GVITCEGCKGFFRRSQQNNASYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 83
Query: 63 G 63
G
Sbjct: 84 G 84
>gi|400974222|ref|NP_001257887.1| nuclear receptor ROR-beta [Rattus norvegicus]
gi|109463688|ref|XP_001079696.1| PREDICTED: nuclear receptor ROR-beta isoform 1 [Rattus
norvegicus]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN Y+CK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 57 RNRIYLCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>gi|124028632|sp|P45446.3|RORB_RAT RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
Length = 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|112821692|ref|NP_666207.3| nuclear receptor ROR-beta isoform 2 [Mus musculus]
gi|124028631|sp|Q8R1B8.3|RORB_MOUSE RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|110589525|gb|ABG77270.1| retinoid-related orphan receptor beta 2 isoform [Mus musculus]
Length = 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|44889863|gb|AAS48459.1| glucocorticoid receptor [Dicentrarchus labrax]
Length = 818
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 472 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 529
Query: 56 NRDVTR 61
N + +
Sbjct: 530 NLEARK 535
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G PS
Sbjct: 205 RNLTYSCRGNRNCPIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPS 253
>gi|387966307|gb|AFK14015.1| glucocorticoid receptor [Acipenser ruthenus]
Length = 771
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 423 CG--SCKVFFKRAVEGWRARQNMDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 480
Query: 56 NRDVTR 61
N + +
Sbjct: 481 NLEARK 486
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +Y+CK + G C VD T RNQC+ACR KC++ MN+D +
Sbjct: 46 RSRQYLCKAKSEGSCTVDKTHRNQCRACRLKKCVEAGMNKDAVQ 89
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLL 71
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G + + L
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAIQQGLYPGQYAL 163
>gi|348518936|ref|XP_003446987.1| PREDICTED: glucocorticoid receptor [Oreochromis niloticus]
Length = 803
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 457 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 514
Query: 56 NRDVTR 61
N + +
Sbjct: 515 NLEARK 520
>gi|300798568|ref|NP_001179587.1| nuclear receptor ROR-beta [Bos taurus]
gi|296484753|tpg|DAA26868.1| TPA: RAR-related orphan receptor B [Bos taurus]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|112821700|ref|NP_001036819.1| nuclear receptor ROR-beta isoform 1 [Mus musculus]
gi|110589523|gb|ABG77269.1| retinoid-related orphan receptor beta 1 isoform [Mus musculus]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|395514963|ref|XP_003761678.1| PREDICTED: nuclear receptor ROR-beta [Sarcophilus harrisii]
Length = 487
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 51 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 110
Query: 63 G 63
G
Sbjct: 111 G 111
>gi|37194675|gb|AAH58269.1| Rorb protein, partial [Mus musculus]
Length = 462
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 26 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 85
Query: 63 G 63
G
Sbjct: 86 G 86
>gi|73946789|ref|XP_541280.2| PREDICTED: nuclear receptor ROR-beta [Canis lupus familiaris]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|296189722|ref|XP_002742890.1| PREDICTED: nuclear receptor ROR-beta [Callithrix jacchus]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|221043882|dbj|BAH13618.1| unnamed protein product [Homo sapiens]
Length = 380
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 41 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 95
>gi|216409698|dbj|BAH02286.1| retinoid-related orphan receptor beta [Homo sapiens]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ ++G
Sbjct: 145 KDLTYACREERGCTIDKRQRNRCQYCRYQKCLSMGMKREAVQVG 188
>gi|114625040|ref|XP_528326.2| PREDICTED: nuclear receptor ROR-beta isoform 2 [Pan troglodytes]
gi|403256470|ref|XP_003920899.1| PREDICTED: nuclear receptor ROR-beta [Saimiri boliviensis
boliviensis]
gi|426362025|ref|XP_004048183.1| PREDICTED: nuclear receptor ROR-beta isoform 2 [Gorilla gorilla
gorilla]
gi|124028630|sp|Q92753.3|RORB_HUMAN RecName: Full=Nuclear receptor ROR-beta; AltName: Full=Nuclear
receptor RZR-beta; AltName: Full=Nuclear receptor
subfamily 1 group F member 2; AltName:
Full=Retinoid-related orphan receptor-beta
gi|355567837|gb|EHH24178.1| Retinoid-related orphan receptor-beta [Macaca mulatta]
gi|355753418|gb|EHH57464.1| Retinoid-related orphan receptor-beta [Macaca fascicularis]
Length = 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|15485640|emb|CAC67405.1| mineralocorticoid receptor delta [Homo sapiens]
gi|167882812|gb|ACA05926.1| nuclear receptor subfamily 3, group C, member 2 variant 4 [Homo
sapiens]
gi|239740369|gb|ACS13718.1| mineralocorticoid receptor 3 [Homo sapiens]
Length = 706
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>gi|426350464|ref|XP_004042793.1| PREDICTED: glucocorticoid receptor-like [Gorilla gorilla gorilla]
Length = 380
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 41 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 95
>gi|301621480|ref|XP_002940077.1| PREDICTED: nuclear receptor ROR-beta-like [Xenopus (Silurana)
tropicalis]
Length = 458
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|149062564|gb|EDM12987.1| RAR-related orphan receptor beta (predicted) [Rattus norvegicus]
Length = 452
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|134085669|ref|NP_001076920.1| nuclear receptor ROR-gamma [Bos taurus]
gi|126513271|gb|ABO15740.1| RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +L
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKL 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|440912616|gb|ELR62171.1| Nuclear receptor ROR-beta, partial [Bos grunniens mutus]
Length = 467
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 31 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 90
Query: 63 G 63
G
Sbjct: 91 G 91
>gi|410978736|ref|XP_003995744.1| PREDICTED: nuclear receptor subfamily 4 group A member 3 [Felis
catus]
Length = 568
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 264 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 305
>gi|410961130|ref|XP_003987138.1| PREDICTED: nuclear receptor ROR-alpha [Felis catus]
Length = 493
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 56 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 115
Query: 63 G 63
G
Sbjct: 116 G 116
>gi|348572976|ref|XP_003472268.1| PREDICTED: nuclear receptor ROR-beta-like [Cavia porcellus]
Length = 470
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|332236552|ref|XP_003267464.1| PREDICTED: nuclear receptor ROR-beta [Nomascus leucogenys]
Length = 459
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|313214248|emb|CBY42707.1| unnamed protein product [Oikopleura dioica]
Length = 479
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
N Y C G C+VD T RN+CQACR KCL + M+RD + G
Sbjct: 73 NARYNCPRSGTCVVDRTNRNRCQACRLKKCLGLGMSRDAVKFG 115
>gi|28573920|ref|NP_788301.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
gi|28380972|gb|AAO41453.1| hormone receptor-like in 46, isoform C [Drosophila melanogaster]
Length = 694
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 273 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 332
Query: 63 G 63
G
Sbjct: 333 G 333
>gi|320543744|ref|NP_788302.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
gi|318068560|gb|AAO41454.2| hormone receptor-like in 46, isoform E [Drosophila melanogaster]
Length = 874
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 453 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 512
Query: 63 G 63
G
Sbjct: 513 G 513
>gi|195582120|ref|XP_002080876.1| GD26001 [Drosophila simulans]
gi|194192885|gb|EDX06461.1| GD26001 [Drosophila simulans]
Length = 627
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 449 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 508
Query: 63 G 63
G
Sbjct: 509 G 509
>gi|194858004|ref|XP_001969081.1| GG25225 [Drosophila erecta]
gi|190660948|gb|EDV58140.1| GG25225 [Drosophila erecta]
Length = 702
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 279 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 338
Query: 63 G 63
G
Sbjct: 339 G 339
>gi|6016116|sp|O73673.1|GCR_PAROL RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|3123741|dbj|BAA25997.1| glucocorticoid receptor [Paralichthys olivaceus]
Length = 807
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 462 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 519
Query: 56 NRDVTR 61
N + +
Sbjct: 520 NLEARK 525
>gi|371768882|gb|AEX56588.1| glucocorticoid receptor 1 [Platichthys flesus]
Length = 807
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 462 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 519
Query: 56 NRDVTR 61
N + +
Sbjct: 520 NLEARK 525
>gi|410948533|ref|XP_003980986.1| PREDICTED: glucocorticoid receptor isoform 2 [Felis catus]
Length = 379
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 40 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 94
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+ L
Sbjct: 106 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVSSL 148
>gi|395834946|ref|XP_003790446.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Otolemur garnettii]
gi|395834950|ref|XP_003790448.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Otolemur garnettii]
Length = 598
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVR---------------NLEYVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR N +Y+C C VD RRN+CQ CRF K
Sbjct: 267 CAVCGDSASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQK 326
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 327 CLAVGMVKEVVR 338
>gi|355753166|gb|EHH57212.1| Nuclear hormone receptor NOR-1 [Macaca fascicularis]
Length = 506
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 202 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 243
>gi|395540615|ref|XP_003772248.1| PREDICTED: nuclear receptor subfamily 4 group A member 1
[Sarcophilus harrisii]
Length = 599
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYVCLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|325517505|gb|ADZ24979.1| glucocorticoid receptor 1a [Oryzias dancena]
Length = 781
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 436 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 493
Query: 56 NRDVTR 61
N + +
Sbjct: 494 NLEARK 499
>gi|185133302|ref|NP_001118202.1| glucocorticoid receptor [Oncorhynchus mykiss]
gi|1730254|sp|P49843.1|GCR_ONCMY RecName: Full=Glucocorticoid receptor; Short=GR; AltName:
Full=Nuclear receptor subfamily 3 group C member 1
gi|995677|emb|CAA90937.1| glucocorticoid receptor [Oncorhynchus mykiss]
Length = 758
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 404 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 461
Query: 56 NRDVTR 61
N + +
Sbjct: 462 NLEARK 467
>gi|431898686|gb|ELK07066.1| Nuclear receptor ROR-beta, partial [Pteropus alecto]
Length = 460
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 24 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 83
Query: 63 G 63
G
Sbjct: 84 G 84
>gi|291383385|ref|XP_002708255.1| PREDICTED: RAR-related orphan receptor B [Oryctolagus cuniculus]
Length = 459
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|1619294|emb|CAA69929.1| nuclear orphan receptor ROR-beta [Homo sapiens]
Length = 459
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|351714484|gb|EHB17403.1| Nuclear receptor ROR-beta [Heterocephalus glaber]
Length = 510
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>gi|344271210|ref|XP_003407434.1| PREDICTED: nuclear receptor ROR-beta, partial [Loxodonta
africana]
Length = 458
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 22 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 81
Query: 63 G 63
G
Sbjct: 82 G 82
>gi|324504682|gb|ADY42020.1| Retinoic acid receptor beta [Ascaris suum]
Length = 616
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV+SC+ F R N+EY C + C VD RN+CQ+CRF KCL+ M+++ R
Sbjct: 375 GVMSCEGCKGFFRRTVQKNMEYSCHKDKACKVDRISRNRCQSCRFEKCLKAGMSKESVR 433
>gi|194224754|ref|XP_001488198.2| PREDICTED: nuclear receptor ROR-beta [Equus caballus]
Length = 459
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|395819239|ref|XP_003783005.1| PREDICTED: nuclear receptor ROR-beta [Otolemur garnettii]
Length = 459
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 30 GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 200 GRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 231
>gi|151413583|gb|ABS11249.1| thyroid hormone receptor [Branchiostoma floridae]
Length = 431
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
++L+Y CK G C+VD T RNQCQ CRF KC++V M D+
Sbjct: 84 KDLKYSCKYAGDCVVDKTTRNQCQECRFKKCVRVGMATDL 123
>gi|114049537|emb|CAJ90622.1| HR3 isoform B1 [Blattella germanica]
Length = 651
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 95 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 154
Query: 63 G 63
G
Sbjct: 155 G 155
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN +YVCK R C VD T RNQC+ACR +KC++ MNRD
Sbjct: 47 RNRQYVCKSRNQDKCPVDKTHRNQCRACRLNKCVKSGMNRDA 88
>gi|301772378|ref|XP_002921623.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 1-like [Ailuropoda melanoleuca]
Length = 579
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVR---------------NLEYVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR N +Y+C C VD RRN+CQ CRF K
Sbjct: 261 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQK 320
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 321 CLAVGMVKEVVR 332
>gi|281485485|dbj|BAI59767.1| estrogen receptor [Branchiostoma belcheri]
Length = 694
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 14 CQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R+++ Y+C C +D RR CQACR+ KCL V M +D R G
Sbjct: 306 CKAFFKRSIQQGQTDYICPGTNQCTIDRNRRKSCQACRYRKCLMVGMTKDGRRNG 360
>gi|151413585|gb|ABS11250.1| thyroid hormone receptor [Branchiostoma lanceolatum]
Length = 426
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
++L+Y CK G C+VD T RNQCQ CRF KC++V M D+
Sbjct: 81 KDLKYSCKYAGDCVVDKTTRNQCQECRFKKCVRVGMATDL 120
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C +D T RNQC+ACR +KC Q MN+D +
Sbjct: 42 RNRVYTCKAQGELKGRCPIDKTHRNQCRACRLNKCFQSAMNKDAVQ 87
>gi|297684595|ref|XP_002819914.1| PREDICTED: nuclear receptor ROR-beta [Pongo abelii]
Length = 464
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|57791246|gb|AAW56453.1| glucocorticoid receptor [Salmo trutta]
Length = 754
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 400 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDRIRRKNCPACRFRKCLQAGM 457
Query: 56 NRDVTR 61
N + +
Sbjct: 458 NLEARK 463
>gi|313224753|emb|CBY20544.1| unnamed protein product [Oikopleura dioica]
Length = 625
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 6 CPDCGVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C GV +C+ +N +YVC +C +D RRN+CQ CR+ KCL V M ++
Sbjct: 254 CQHYGVRTCEGCKGFFKRTVQKNAKYVCLANKNCPIDKRRRNRCQYCRYQKCLAVGMVKE 313
Query: 59 VTR 61
V R
Sbjct: 314 VVR 316
>gi|395834948|ref|XP_003790447.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Otolemur garnettii]
Length = 610
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVR---------------NLEYVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR N +Y+C C VD RRN+CQ CRF K
Sbjct: 279 CAVCGDSASCQHYGVRTCEGCKGFFKRTVQKNAKYICLANKDCPVDKRRRNRCQFCRFQK 338
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 339 CLAVGMVKEVVR 350
>gi|118343914|ref|NP_001071779.1| nuclear receptor [Ciona intestinalis]
gi|70570405|dbj|BAE06594.1| nuclear receptor [Ciona intestinalis]
Length = 1054
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R ++ YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 735 CKGFFKRTVQKKSTYVCLANRNCPVDKRRRNRCQFCRFEKCLAVGMVKEVVR 786
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 110 KDLSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 151
>gi|350427740|ref|XP_003494862.1| PREDICTED: hypothetical protein LOC100741960 [Bombus impatiens]
Length = 790
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 456 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQK 515
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 516 CLMVGMVKEVVR 527
>gi|68132032|gb|AAY85282.1| RORgamma-A [Danio rerio]
Length = 375
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +CI+D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNAMYSCSRQRNCIIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|256073263|ref|XP_002572951.1| steroid hormone receptor ad4bp [Schistosoma mansoni]
gi|353230970|emb|CCD77387.1| putative steroidogenic factor 1 (stf-1) (sf-1) (adrenal 4 binding
protein) (steroid hormone receptor ad4bp) (fushi tarazu
factor homolog 1) [Schistosoma mansoni]
Length = 1457
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 5 DCPDCG------------VVSCQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFS 48
+CP CG SC+ F R + EY C E+G+C+VD R +C CRF
Sbjct: 108 NCPICGDKVSGYHYGLPTCESCKGFFKRTVQNKKEYHCNEQGNCVVDRLHRKRCAYCRFQ 167
Query: 49 KCLQVKMNRDVTR 61
KCL V M + R
Sbjct: 168 KCLIVGMRVEAVR 180
>gi|56131042|gb|AAV80237.1| FTZ-F1-alpha [Schistosoma mansoni]
Length = 1892
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 5 DCPDCG------------VVSCQFVFVRNL----EYVCKERGHCIVDVTRRNQCQACRFS 48
+CP CG SC+ F R + EY C E+G+C+VD R +C CRF
Sbjct: 108 NCPICGDKVSGYHYGLPTCESCKGFFKRTVQNKKEYHCNEQGNCVVDRLHRKRCAYCRFQ 167
Query: 49 KCLQVKMNRDVTR 61
KCL V M + R
Sbjct: 168 KCLIVGMRVEAVR 180
>gi|431921666|gb|ELK19018.1| Nuclear receptor subfamily 4 group A member 1 [Pteropus alecto]
Length = 598
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|371768880|gb|AEX56587.1| mineralocorticoid receptor [Platichthys flesus]
Length = 989
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 627 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMN 676
>gi|50539872|ref|NP_001002406.1| nuclear receptor subfamily 4, group A, member 2b [Danio rerio]
gi|49903884|gb|AAH76176.1| Nuclear receptor subfamily 4, group A, member 2b [Danio rerio]
Length = 586
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 288 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLVVGMVKEVVR 329
>gi|402886040|ref|XP_003906449.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Papio anubis]
Length = 670
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 369 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 410
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 8/56 (14%)
Query: 14 CQFVFVRNLE----YVCKERGH----CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C F R++ YVCK++G C +D T RNQC+ACR KC + +MN+D +
Sbjct: 75 CSGFFKRSIHRGRVYVCKQQGKGGGDCPIDKTHRNQCRACRLRKCFEAQMNKDAVQ 130
>gi|194500051|gb|ACF75335.1| glucocorticoid receptor [Perca fluviatilis]
Length = 784
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 456 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 513
Query: 56 NRDVTR 61
N + +
Sbjct: 514 NLEARK 519
>gi|17541682|ref|NP_502094.1| Protein NHR-67 [Caenorhabditis elegans]
gi|17369901|sp|Q9XVV3.1|NHR67_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-67
gi|3874154|emb|CAA97428.1| Protein NHR-67 [Caenorhabditis elegans]
Length = 416
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK +G C VD T RNQC+ACR KCL++ MN+D
Sbjct: 51 RHRQYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDA 95
>gi|256070329|ref|XP_002571495.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 990
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV+SC+ F R +EY C G C+V RN+CQ CRF KCL M++D R
Sbjct: 302 GVISCEGCKGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCLAAGMSKDSVRY 361
Query: 63 G 63
G
Sbjct: 362 G 362
>gi|167650894|gb|AAR30507.2| ecdysone-induced protein E78 [Schistosoma mansoni]
gi|350646273|emb|CCD58999.1| nuclear hormone receptor superfamily protein-related [Schistosoma
mansoni]
Length = 1087
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV+SC+ F R +EY C G C+V RN+CQ CRF KCL M++D R
Sbjct: 302 GVISCEGCKGFFRRSIQKQIEYKCLRDGKCLVIRLNRNRCQYCRFRKCLAAGMSKDSVRY 361
Query: 63 G 63
G
Sbjct: 362 G 362
>gi|332839341|ref|XP_003313739.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Pan troglodytes]
Length = 652
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 351 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 392
>gi|260807353|ref|XP_002598473.1| hypothetical protein BRAFLDRAFT_282854 [Branchiostoma floridae]
gi|229283746|gb|EEN54485.1| hypothetical protein BRAFLDRAFT_282854 [Branchiostoma floridae]
Length = 419
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
++L+Y CK G C+VD T RNQCQ CRF KC++V M D+
Sbjct: 84 KDLKYSCKYAGDCVVDKTTRNQCQECRFKKCVRVGMATDL 123
>gi|156713694|emb|CAI51316.3| glucocorticoid receptor GR1a [Cyprinus carpio]
Length = 730
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 382 CG--SCKVFFKRAVEGWRARQNADGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 439
Query: 56 NRDVTR 61
N + +
Sbjct: 440 NLEARK 445
>gi|444521917|gb|ELV13238.1| Nuclear receptor subfamily 4 group A member 1 [Tupaia chinensis]
Length = 598
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|431892525|gb|ELK02958.1| Glucocorticoid receptor [Pteropus alecto]
Length = 379
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 40 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 94
>gi|397522106|ref|XP_003831120.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 [Pan
paniscus]
Length = 652
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 351 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 392
>gi|332839337|ref|XP_003313737.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Pan troglodytes]
gi|332839339|ref|XP_003313738.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Pan troglodytes]
gi|410046663|ref|XP_003952237.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 [Pan
troglodytes]
gi|410256444|gb|JAA16189.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410340575|gb|JAA39234.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
Length = 598
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|119578627|gb|EAW58223.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_b
[Homo sapiens]
Length = 670
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 369 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 410
>gi|340723425|ref|XP_003400090.1| PREDICTED: hypothetical protein LOC100642535 [Bombus terrestris]
Length = 790
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 456 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQK 515
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 516 CLMVGMVKEVVR 527
>gi|443690966|gb|ELT92951.1| hypothetical protein CAPTEDRAFT_224945 [Capitella teleta]
Length = 445
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+NL Y CKE G C+V+ RN CQ CRF KC++V M R+ R
Sbjct: 128 KNLNYCCKENGMCVVNKFTRNSCQCCRFQKCIEVGMKREAVR 169
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C VD RNQCQ CR KCL+V M R+V R
Sbjct: 84 RNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREVQR 125
>gi|431896654|gb|ELK06066.1| Nuclear receptor ROR-gamma [Pteropus alecto]
Length = 771
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 254 GVITCEGCKGFFRRSQHCNVAYSCTRQRNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 313
Query: 63 G 63
G
Sbjct: 314 G 314
>gi|441632234|ref|XP_003252164.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 4 group
A member 1 [Nomascus leucogenys]
Length = 587
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 286 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 327
>gi|440896105|gb|ELR48130.1| Nuclear receptor subfamily 4 group A member 1, partial [Bos
grunniens mutus]
Length = 605
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 304 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 345
>gi|292834|gb|AAA36763.1| TR3 orphan receptor [Homo sapiens]
gi|227762|prf||1710271A steroid receptor TR3
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|405950887|gb|EKC18844.1| Putative nuclear hormone receptor HR38 [Crassostrea gigas]
Length = 664
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 358 KNAKYVCLADKNCPVDKRRRNRCQFCRFQKCLSVGMVKEVVR 399
>gi|402886042|ref|XP_003906450.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Papio anubis]
Length = 652
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 351 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 392
>gi|340712645|ref|XP_003394866.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 425
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Query: 21 NLEYVCK----ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
N Y+CK +G C +D T RNQC+ACR +KC + MNRD +
Sbjct: 42 NRRYICKVQGAMKGRCPIDKTHRNQCRACRLAKCFEANMNRDAVQ 86
>gi|297262413|ref|XP_001085399.2| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Macaca mulatta]
gi|355564245|gb|EHH20745.1| Orphan nuclear receptor HMR [Macaca mulatta]
gi|355786109|gb|EHH66292.1| Orphan nuclear receptor HMR [Macaca fascicularis]
Length = 652
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 351 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 392
>gi|194212001|ref|XP_001504414.2| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 1 [Equus caballus]
Length = 593
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 292 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 333
>gi|47077635|dbj|BAD18699.1| unnamed protein product [Homo sapiens]
Length = 652
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 351 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 392
>gi|6007621|gb|AAF00981.1|AF136372_1 RXR [Locusta migratoria]
Length = 389
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 118 KDLSYACREDKNCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 159
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 106 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 154
>gi|170036586|ref|XP_001846144.1| nuclear hormone receptor [Culex quinquefasciatus]
gi|167879298|gb|EDS42681.1| nuclear hormone receptor [Culex quinquefasciatus]
Length = 707
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 455 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 514
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 515 CLAVGMVKEVVR 526
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ ++G
Sbjct: 102 KDLTYACREERSCTIDKRQRNRCQYCRYQKCLTMGMKREAVQVG 145
>gi|332839343|ref|XP_509073.3| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Pan troglodytes]
gi|410215234|gb|JAA04836.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410256442|gb|JAA16188.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410292876|gb|JAA25038.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
gi|410340573|gb|JAA39233.1| nuclear receptor subfamily 4, group A, member 1 [Pan troglodytes]
Length = 611
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 310 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 351
>gi|405965498|gb|EKC30867.1| Thyroid hormone receptor beta-A [Crassostrea gigas]
Length = 525
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFL 79
+NL+Y CK C +D RNQCQ CRF KCL V M D RLG S V+S +
Sbjct: 161 KNLQYHCKWNKMCSIDKNSRNQCQECRFRKCLNVGMATD--RLGHLDRSSGFLVLSEEAV 218
Query: 80 FGQ---ESPAWMCFV 91
+ PA M FV
Sbjct: 219 LPRIEINVPAVMSFV 233
>gi|405952054|gb|EKC19908.1| Nuclear receptor subfamily 4 group A member 3 [Crassostrea gigas]
Length = 356
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
+N YVC C++D +RRN+CQ+CRF KCL V M+++V R G
Sbjct: 292 KNSNYVCVGDKKCLIDKSRRNRCQSCRFQKCLTVGMSKEVVRSG 335
>gi|66910331|gb|AAH96929.1| Rorb protein [Danio rerio]
Length = 400
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|167882811|gb|ACA05925.1| nuclear receptor subfamily 3, group C, member 2 variant 3 [Homo
sapiens]
gi|239740368|gb|ACS13717.1| mineralocorticoid receptor 2 [Homo sapiens]
Length = 988
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 9 CGVVSCQFVFVRNLE--------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGKCSWQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 673
>gi|383857638|ref|XP_003704311.1| PREDICTED: uncharacterized protein LOC100884030 [Megachile
rotundata]
Length = 793
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 459 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQK 518
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 519 CLMVGMVKEVVR 530
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 76 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 124
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R L Y C+ G C+VD T RNQCQACR KC+++ MN+DV
Sbjct: 159 RKLIYRCQAGTGSCLVDKTHRNQCQACRLKKCIEMGMNKDV 199
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 106 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 154
>gi|442623145|ref|NP_001260854.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
gi|440214256|gb|AGB93387.1| hormone receptor-like in 46, isoform H [Drosophila melanogaster]
Length = 529
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|432112627|gb|ELK35343.1| Nuclear receptor subfamily 4 group A member 1 [Myotis davidii]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|426345658|ref|XP_004040521.1| PREDICTED: mineralocorticoid receptor-like [Gorilla gorilla
gorilla]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 50 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 99
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCL + MN+D +
Sbjct: 135 RKLIYRCQAGTGSCVVDKAHRNQCQACRLKKCLNMGMNKDAVQ 177
>gi|30584675|gb|AAP36590.1| Homo sapiens nuclear receptor subfamily 4, group A, member 1
[synthetic construct]
gi|61370617|gb|AAX43525.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|61370625|gb|AAX43526.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
Length = 599
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|344275191|ref|XP_003409397.1| PREDICTED: nuclear receptor ROR-gamma-like [Loxodonta africana]
Length = 752
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 279 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 338
Query: 63 G 63
G
Sbjct: 339 G 339
>gi|321476560|gb|EFX87520.1| hypothetical protein DAPPUDRAFT_311954 [Daphnia pulex]
Length = 616
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KCL + M+RD +
Sbjct: 199 GVITCEGCKGFFRRSQSSVVNYQCPRQKNCVVDRVNRNRCQYCRLQKCLALGMSRDAVKF 258
Query: 63 G 63
G
Sbjct: 259 G 259
>gi|115497502|ref|NP_001069379.1| nuclear receptor subfamily 4 group A member 1 [Bos taurus]
gi|122142352|sp|Q0V8F0.1|NR4A1_BOVIN RecName: Full=Nuclear receptor subfamily 4 group A member 1
gi|110332005|gb|ABG67108.1| nuclear receptor subfamily 4, group A, member 1 [Bos taurus]
gi|296487863|tpg|DAA29976.1| TPA: nuclear receptor subfamily 4 group A member 1 [Bos taurus]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|21361342|ref|NP_002126.2| nuclear receptor subfamily 4 group A member 1 isoform 1 [Homo
sapiens]
gi|27894344|ref|NP_775180.1| nuclear receptor subfamily 4 group A member 1 isoform 1 [Homo
sapiens]
gi|127819|sp|P22736.1|NR4A1_HUMAN RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Early response protein NAK1; AltName:
Full=Nuclear hormone receptor NUR/77; Short=Nur77;
AltName: Full=Orphan nuclear receptor HMR; AltName:
Full=Orphan nuclear receptor TR3; AltName: Full=ST-59;
AltName: Full=Testicular receptor 3
gi|1813882|dbj|BAA08565.1| DNA binding protein [Homo sapiens]
gi|16359383|gb|AAH16147.1| Nuclear receptor subfamily 4, group A, member 1 [Homo sapiens]
gi|30583127|gb|AAP35808.1| nuclear receptor subfamily 4, group A, member 1 [Homo sapiens]
gi|61360895|gb|AAX41947.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|61360899|gb|AAX41948.1| nuclear receptor subfamily 4 group A member 1 [synthetic construct]
gi|119578629|gb|EAW58225.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578630|gb|EAW58226.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578631|gb|EAW58227.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|119578632|gb|EAW58228.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_d
[Homo sapiens]
gi|123980462|gb|ABM82060.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|123995275|gb|ABM85239.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|216409742|dbj|BAH02308.1| nuclear receptor subfamily 4 [Homo sapiens]
gi|307684740|dbj|BAJ20410.1| nuclear receptor subfamily 4, group A, member 1 [synthetic
construct]
gi|325495521|gb|ADZ17366.1| nerve growth factor IB nuclear receptor variant 1 [Homo sapiens]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|390340003|ref|XP_003725145.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 1 [Strongylocentrotus purpuratus]
gi|390340007|ref|XP_786266.3| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
isoform 3 [Strongylocentrotus purpuratus]
Length = 724
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL M ++V R
Sbjct: 419 KNAKYVCLANKNCTVDKRRRNRCQYCRFQKCLACGMVKEVVR 460
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V R
Sbjct: 106 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVQR 147
>gi|50979006|ref|NP_001003227.1| nuclear receptor subfamily 4 group A member 1 [Canis lupus
familiaris]
gi|1709262|sp|P51666.1|NR4A1_CANFA RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Orphan nuclear receptor HMR; AltName:
Full=Orphan nuclear receptor NGFI-B
gi|1279347|emb|CAA65863.1| orphan nuclear receptor [Canis lupus familiaris]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|410964465|ref|XP_003988775.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Felis catus]
gi|410964467|ref|XP_003988776.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Felis catus]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|52545682|emb|CAD38550.2| hypothetical protein [Homo sapiens]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|48145525|emb|CAG32985.1| NR4A1 [Homo sapiens]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 235 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 283
>gi|114049539|emb|CAJ90623.1| HR3 isoform B2 [Blattella germanica]
Length = 566
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 95 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 154
Query: 63 G 63
G
Sbjct: 155 G 155
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|114049535|emb|CAJ90621.1| HR3 isoform A [Blattella germanica]
Length = 607
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 51 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 110
Query: 63 G 63
G
Sbjct: 111 G 111
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|443700841|gb|ELT99607.1| hypothetical protein CAPTEDRAFT_167148 [Capitella teleta]
Length = 362
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+NL+Y CK +C +D T RNQCQ CRF KC+ V M D+
Sbjct: 40 KNLQYHCKWNNNCAIDKTTRNQCQFCRFRKCIDVGMATDL 79
>gi|426372584|ref|XP_004053202.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Gorilla gorilla gorilla]
gi|426372586|ref|XP_004053203.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Gorilla gorilla gorilla]
gi|426372590|ref|XP_004053205.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 4
[Gorilla gorilla gorilla]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 75 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 123
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V R
Sbjct: 91 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVQR 132
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C VD RNQCQ CR KCL+V M R+ + G P+
Sbjct: 84 RNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPN 132
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 105 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 153
>gi|410926883|ref|XP_003976898.1| PREDICTED: estrogen-related receptor gamma-like [Takifugu rubripes]
Length = 431
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY+C +C + RR CQACRF KCLQ M R+ R+
Sbjct: 124 ACKAFFKRTMQGNIEYICPVNNNCEITKRRRKACQACRFQKCLQAGMMREGVRI 177
>gi|297262409|ref|XP_002798634.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Macaca mulatta]
gi|297262411|ref|XP_002798635.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Macaca mulatta]
Length = 598
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 105 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 153
>gi|218505955|gb|ABN49269.2| IP15960p [Drosophila melanogaster]
Length = 487
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 105 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 153
>gi|158296777|ref|XP_317123.4| AGAP008334-PA [Anopheles gambiae str. PEST]
gi|157014874|gb|EAA12420.4| AGAP008334-PA [Anopheles gambiae str. PEST]
Length = 732
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 398 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 457
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 458 CLAVGMVKEVVR 469
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V R
Sbjct: 104 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVQR 145
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C+VD +RN+CQ CR+ KCL + M R+V +
Sbjct: 171 KDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQ 212
>gi|28573924|ref|NP_788303.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|386767645|ref|NP_001246236.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
gi|195475280|ref|XP_002089912.1| GE21721 [Drosophila yakuba]
gi|399369|sp|P31396.1|HR3_DROME RecName: Full=Probable nuclear hormone receptor HR3; Short=dHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|157230|gb|AAA28461.1| DHR3 [Drosophila melanogaster]
gi|7303778|gb|AAF58826.1| hormone receptor-like in 46, isoform A [Drosophila melanogaster]
gi|194176013|gb|EDW89624.1| GE21721 [Drosophila yakuba]
gi|373251236|gb|AEY64286.1| FI17818p1 [Drosophila melanogaster]
gi|383302381|gb|AFH07991.1| hormone receptor-like in 46, isoform F [Drosophila melanogaster]
Length = 487
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|402886036|ref|XP_003906447.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Papio anubis]
gi|402886038|ref|XP_003906448.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Papio anubis]
gi|402886044|ref|XP_003906451.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 5
[Papio anubis]
Length = 598
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|307170857|gb|EFN62968.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 226
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 13 SCQFVFVR----NLEYVCK----ERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C F R N EY+CK ++G C +D T RNQC+ACR +KC + MN+D
Sbjct: 78 GCSGFFKRSIHSNREYICKAQGAKKGRCPIDKTHRNQCRACRLAKCFEANMNKD 131
>gi|296211713|ref|XP_002752535.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Callithrix jacchus]
gi|390467657|ref|XP_003733799.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Callithrix jacchus]
Length = 598
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|391852154|ref|NP_001254678.1| mineralocorticoid receptor [Callithrix jacchus]
gi|31324675|gb|AAP48591.1| mineralocorticoid receptor +4 isoform [Callithrix jacchus]
Length = 987
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 9 CGVVSCQFVFVRNLE--------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGKCSWQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 672
>gi|195120906|ref|XP_002004962.1| GI20211 [Drosophila mojavensis]
gi|193910030|gb|EDW08897.1| GI20211 [Drosophila mojavensis]
Length = 487
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|125808571|ref|XP_001360799.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|195151019|ref|XP_002016447.1| GL10487 [Drosophila persimilis]
gi|54635971|gb|EAL25374.1| GA17350 [Drosophila pseudoobscura pseudoobscura]
gi|194110294|gb|EDW32337.1| GL10487 [Drosophila persimilis]
Length = 487
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 116 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 164
>gi|315360631|ref|NP_001186756.1| RAR-related orphan receptor gamma 1 [Oncorhynchus mykiss]
gi|313760284|emb|CAT65098.1| RAR-related orphan receptor gamma 1 protein [Oncorhynchus mykiss]
Length = 469
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67
RNL Y C+ C +D RNQCQ CR KCL+V M R+V R +P
Sbjct: 93 RNLTYTCRSNRDCPIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMSHP 140
>gi|194878774|ref|XP_001974125.1| GG21557 [Drosophila erecta]
gi|190657312|gb|EDV54525.1| GG21557 [Drosophila erecta]
Length = 1136
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 807 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 866
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 867 CLVVGMVKEVVR 878
>gi|48256851|gb|AAT41627.1| glucocorticoid receptor [Dicentrarchus labrax]
Length = 779
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R ++ Y+C R CI+D RR C ACRF KCL MN + +
Sbjct: 440 CG--SCKVFFKRAVKGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLMAGMNLEARK 494
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLL 71
R L Y C+ C +DV RNQCQ CRF KC++ M ++ + G PS+ L
Sbjct: 289 RKLTYTCRGTRQCPIDVHHRNQCQYCRFQKCVRAGMRKEAVQQG-RLPSYPL 339
>gi|313230320|emb|CBY08024.1| unnamed protein product [Oikopleura dioica]
Length = 420
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+ L Y C++ HC++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 132 KELSYSCRDNKHCVIDKRQRNRCQFCRYQKCLTMGMKREAVQ 173
>gi|242005002|ref|XP_002423364.1| hormone receptor hr3, putative [Pediculus humanus corporis]
gi|212506394|gb|EEB10626.1| hormone receptor hr3, putative [Pediculus humanus corporis]
Length = 599
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 58 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 117
Query: 63 G 63
G
Sbjct: 118 G 118
>gi|426372588|ref|XP_004053204.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Gorilla gorilla gorilla]
Length = 611
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 310 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 351
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C+VD +RN+CQ CR+ KCL + M R+V +
Sbjct: 155 KDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQ 196
>gi|195383602|ref|XP_002050515.1| GJ20161 [Drosophila virilis]
gi|194145312|gb|EDW61708.1| GJ20161 [Drosophila virilis]
Length = 487
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|193575673|ref|XP_001945915.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 396
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN +Y+CK + G C VD T RNQC+ACR KC+ MN+D +
Sbjct: 56 RNRQYICKSKSEGACPVDKTHRNQCRACRLRKCMLSGMNKDAVQ 99
>gi|157135212|ref|XP_001663431.1| expressed protein (AHR38) [Aedes aegypti]
gi|108870261|gb|EAT34486.1| AAEL013270-PA [Aedes aegypti]
Length = 790
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 456 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKACPVDKRRRNRCQFCRFQK 515
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 516 CLAVGMVKEVVR 527
>gi|197098126|ref|NP_001125545.1| nuclear receptor subfamily 4 group A member 1 [Pongo abelii]
gi|55728412|emb|CAH90950.1| hypothetical protein [Pongo abelii]
Length = 598
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|403296687|ref|XP_003939229.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 3
[Saimiri boliviensis boliviensis]
Length = 639
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 338 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 379
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 111 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 159
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+ L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 110 KELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 151
>gi|339236037|ref|XP_003379573.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
gi|316977756|gb|EFV60819.1| retinoic acid receptor RXR-alpha [Trichinella spiralis]
Length = 502
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E HC++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 204 KDLTYTCRESRHCVIDKRQRNRCQYCRYQKCLIMGMKREAVQ 245
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|320202956|ref|NP_001189162.1| nuclear receptor subfamily 4 group A member 1 isoform 2 [Homo
sapiens]
gi|119578626|gb|EAW58222.1| nuclear receptor subfamily 4, group A, member 1, isoform CRA_a
[Homo sapiens]
gi|194387126|dbj|BAG59929.1| unnamed protein product [Homo sapiens]
Length = 611
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 310 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 351
>gi|403296683|ref|XP_003939227.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403296685|ref|XP_003939228.1| PREDICTED: nuclear receptor subfamily 4 group A member 1 isoform 2
[Saimiri boliviensis boliviensis]
Length = 598
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|195387014|ref|XP_002052199.1| GJ17428 [Drosophila virilis]
gi|194148656|gb|EDW64354.1| GJ17428 [Drosophila virilis]
Length = 878
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 536 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQFCRFQK 595
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 596 CLVVGMVKEVVR 607
>gi|195119101|ref|XP_002004070.1| GI19631 [Drosophila mojavensis]
gi|193914645|gb|EDW13512.1| GI19631 [Drosophila mojavensis]
Length = 981
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 639 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQFCRFQK 698
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 699 CLVVGMVKEVVR 710
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 140 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 181
>gi|308460055|ref|XP_003092336.1| CRE-NHR-23 protein [Caenorhabditis remanei]
gi|308253567|gb|EFO97519.1| CRE-NHR-23 protein [Caenorhabditis remanei]
Length = 597
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +CIVD RN+CQ CR KC+++ M+RD +
Sbjct: 152 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCIVDRVNRNRCQYCRLKKCIELGMSRDAVKF 211
Query: 63 G 63
G
Sbjct: 212 G 212
>gi|312065717|ref|XP_003135925.1| nuclear hormone receptor [Loa loa]
gi|307768897|gb|EFO28131.1| nuclear hormone receptor [Loa loa]
Length = 198
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFL 79
R+L Y C+ +C VDV RNQCQ CR KC ++ M ++ + G P+ V SS L
Sbjct: 104 RSLNYTCRGSKNCPVDVNHRNQCQYCRLKKCERMGMRKEAVQRGRIPPN-AQNVYSSTVL 162
Query: 80 FGQ 82
FG+
Sbjct: 163 FGE 165
>gi|195030112|ref|XP_001987912.1| GH10850 [Drosophila grimshawi]
gi|193903912|gb|EDW02779.1| GH10850 [Drosophila grimshawi]
Length = 1161
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 819 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQFCRFQK 878
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 879 CLVVGMVKEVVR 890
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 106 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 154
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 78 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 126
>gi|45738136|gb|AAS75839.1| mineralocorticoid receptor form A [Oncorhynchus mykiss]
Length = 747
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 9 CGVVSCQFVFVRNLE-------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 379 CG--SCKVFFKRAVEGRKSQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMN 431
>gi|432895815|ref|XP_004076175.1| PREDICTED: glucocorticoid receptor-like [Oryzias latipes]
Length = 853
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 443 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 500
Query: 56 NRDVTR 61
N + +
Sbjct: 501 NLEARK 506
>gi|195485831|ref|XP_002091251.1| GE13549 [Drosophila yakuba]
gi|194177352|gb|EDW90963.1| GE13549 [Drosophila yakuba]
Length = 1059
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 730 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 789
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 790 CLVVGMVKEVVR 801
>gi|195442298|ref|XP_002068895.1| GK18019 [Drosophila willistoni]
gi|194164980|gb|EDW79881.1| GK18019 [Drosophila willistoni]
Length = 524
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 66 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 125
Query: 63 G 63
G
Sbjct: 126 G 126
>gi|195334599|ref|XP_002033965.1| GM21604 [Drosophila sechellia]
gi|194125935|gb|EDW47978.1| GM21604 [Drosophila sechellia]
Length = 642
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 30 GHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 371 GRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 402
>gi|195351909|ref|XP_002042458.1| GM23314 [Drosophila sechellia]
gi|194124327|gb|EDW46370.1| GM23314 [Drosophila sechellia]
Length = 1075
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 746 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 805
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 806 CLVVGMVKEVVR 817
>gi|73586751|gb|AAI03030.1| RORC protein [Bos taurus]
Length = 530
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 56 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 115
Query: 63 G 63
G
Sbjct: 116 G 116
>gi|1708295|sp|P49868.1|HR3_GALME RecName: Full=Probable nuclear hormone receptor HR3; Short=gHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|409272|gb|AAA83401.1| GHR3 [Galleria mellonella]
Length = 557
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 121 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 180
Query: 63 G 63
G
Sbjct: 181 G 181
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|389610515|dbj|BAM18869.1| hormone receptor 3 [Papilio xuthus]
Length = 554
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 118 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 177
Query: 63 G 63
G
Sbjct: 178 G 178
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 76 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 124
>gi|357627930|gb|EHJ77448.1| hormone receptor 3C [Danaus plexippus]
Length = 698
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 116 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 175
Query: 63 G 63
G
Sbjct: 176 G 176
>gi|198385545|gb|ACH86113.1| molt-regulating transcription factor HaHR3 [Helicoverpa armigera]
Length = 556
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 120 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 179
Query: 63 G 63
G
Sbjct: 180 G 180
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 103 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 151
>gi|185135119|ref|NP_001117955.1| mineralocorticoid receptor form A [Oncorhynchus mykiss]
gi|53766435|gb|AAS75842.1| mineralocorticoid receptor form A [Oncorhynchus mykiss]
Length = 1041
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 9 CGVVSCQFVFVRNLE-------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 673 CG--SCKVFFKRAVEGRKSQHNYLCAGRNDCIIDKIRRKNCPACRVRKCLQAGMN 725
>gi|39938474|gb|AAK14384.2| molt-regulating transcription factor HHR3 [Helicoverpa armigera]
Length = 556
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 120 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 179
Query: 63 G 63
G
Sbjct: 180 G 180
>gi|585482|sp|Q08882.1|HR3_MANSE RecName: Full=Probable nuclear hormone receptor HR3; Short=mHR3;
AltName: Full=Nuclear receptor subfamily 1 group F
member 4
gi|396804|emb|CAA52654.1| MHR3 [Manduca sexta]
Length = 548
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 117 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 176
Query: 63 G 63
G
Sbjct: 177 G 177
>gi|170178461|gb|ACB10650.1| estrogen receptor [Branchiostoma floridae]
Length = 521
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 14 CQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R+++ Y+C C +D RR CQACR+ KCL V M +D R G
Sbjct: 133 CKAFFKRSIQQGQTDYICPGTNQCTIDRNRRKSCQACRYRKCLMVGMTKDGRRSG 187
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 117 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 165
>gi|405952211|gb|EKC20050.1| Estrogen-related receptor gamma [Crassostrea gigas]
Length = 442
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C G C + RR CQACRF KCL+V M R+ RL
Sbjct: 123 ACKAFFKRTIQGNIEYSCPANGDCEITKRRRKACQACRFQKCLRVGMLREGVRL 176
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 104 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 152
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 47 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 95
>gi|344266871|ref|XP_003405502.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Loxodonta africana]
Length = 600
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|161076500|ref|NP_001097256.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
gi|157400270|gb|ABV53751.1| hormone receptor-like in 46, isoform D [Drosophila melanogaster]
Length = 456
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 35 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 94
Query: 63 G 63
G
Sbjct: 95 G 95
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus
dolloi]
Length = 273
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V R
Sbjct: 5 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVQR 46
>gi|417411882|gb|JAA52360.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Desmodus rotundus]
Length = 600
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 299 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 340
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 90 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 138
>gi|195028616|ref|XP_001987172.1| GH20117 [Drosophila grimshawi]
gi|193903172|gb|EDW02039.1| GH20117 [Drosophila grimshawi]
Length = 487
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|194753930|ref|XP_001959258.1| GF12134 [Drosophila ananassae]
gi|190620556|gb|EDV36080.1| GF12134 [Drosophila ananassae]
Length = 448
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 100 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 148
>gi|291241519|ref|XP_002740657.1| PREDICTED: Orphan nuclear receptor NR6A1, putative-like
[Saccoglossus kowalevskii]
Length = 404
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 9 CGVVSCQF--VFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C SC F RN+ Y C +G+C +D RRN C CR +KC V MNR +
Sbjct: 28 CDGCSCFFKRSIRRNMVYTCIGKGNCTIDKARRNWCPYCRLNKCFAVSMNRSAVQ 82
>gi|158298421|ref|XP_318587.4| AGAP009575-PA [Anopheles gambiae str. PEST]
gi|157013872|gb|EAA14563.5| AGAP009575-PA [Anopheles gambiae str. PEST]
Length = 761
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RN Y CK +G C VD T RNQC+ACR SKC Q MN+D
Sbjct: 39 RNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKD 81
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C+VD +RN+CQ CR+ KCL + M R+V +
Sbjct: 122 KDLSYTCRDNKDCLVDKRQRNRCQYCRYQKCLAMGMKREVVQ 163
>gi|238477359|gb|ACR43485.1| mineralocorticoid receptor [Takifugu obscurus]
Length = 669
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN---RDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KC Q MN R +
Sbjct: 391 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRVRKCFQAGMNLGARKSKK 448
Query: 62 LG 63
LG
Sbjct: 449 LG 450
>gi|281365278|ref|NP_001163024.1| hormone receptor-like in 38, isoform D [Drosophila melanogaster]
gi|272407117|gb|ACZ94310.1| hormone receptor-like in 38, isoform D [Drosophila melanogaster]
Length = 836
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 507 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 566
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 567 CLVVGMVKEVVR 578
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 100 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 148
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 38 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 86
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 113 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 161
>gi|334326740|ref|XP_001371708.2| PREDICTED: nuclear receptor ROR-beta-like [Monodelphis domestica]
Length = 663
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 166 GVITCEGCKGFFRRSQQNNASYSCSRQRNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 225
Query: 63 G 63
G
Sbjct: 226 G 226
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 91 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 139
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 115 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 163
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 34 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 82
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 116 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 164
>gi|328794461|ref|XP_623628.3| PREDICTED: probable nuclear hormone receptor HR38-like, partial
[Apis mellifera]
Length = 704
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 370 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLAEKACPVDKRRRNRCQFCRFQK 429
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 430 CLMVGMVKEVVR 441
>gi|291230474|ref|XP_002735185.1| PREDICTED: peroxisome proliferative activated receptor, delta-like
[Saccoglossus kowalevskii]
Length = 527
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 23 EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
+Y CK+ CI+ R+ CQ CRF KCLQVKM++ R+G
Sbjct: 151 DYKCKKSKSCIITKDTRSSCQYCRFQKCLQVKMDKTKIRMG 191
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria
chalumnae]
Length = 274
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 5 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 53
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 117 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 165
>gi|20151433|gb|AAM11076.1| GH21112p [Drosophila melanogaster]
gi|220947174|gb|ACL86130.1| Hr46-PB [synthetic construct]
gi|220952516|gb|ACL88801.1| Hr46-PB [synthetic construct]
Length = 444
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 116 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 164
>gi|242016902|ref|XP_002428935.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212513751|gb|EEB16197.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 595
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC C VD RRN+CQ CRF K
Sbjct: 230 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKSCPVDKRRRNRCQFCRFQK 289
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 290 CLAVGMVKEVVR 301
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 113 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 161
>gi|17137128|ref|NP_477119.1| hormone receptor-like in 38, isoform B [Drosophila melanogaster]
gi|7298701|gb|AAF53914.1| hormone receptor-like in 38, isoform B [Drosophila melanogaster]
Length = 1078
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 749 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 808
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 809 CLVVGMVKEVVR 820
>gi|3334657|emb|CAA05172.1| hormone receptor 38 [Drosophila melanogaster]
Length = 1073
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 744 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 803
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 804 CLVVGMVKEVVR 815
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 41 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 89
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 116 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 164
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 117 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 165
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 52 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 100
>gi|194759963|ref|XP_001962211.1| GF14553 [Drosophila ananassae]
gi|190615908|gb|EDV31432.1| GF14553 [Drosophila ananassae]
Length = 1093
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 764 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 823
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 824 CLVVGMVKEVVR 835
>gi|115899495|ref|XP_789488.2| PREDICTED: thyroid hormone receptor beta-like [Strongylocentrotus
purpuratus]
Length = 423
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+ L Y CK CI+D T RNQCQ CR+ KCL V M D+
Sbjct: 107 KKLSYYCKWNEECIIDKTTRNQCQQCRYKKCLNVGMAPDL 146
>gi|12644294|sp|P49869.3|HR38_DROME RecName: Full=Probable nuclear hormone receptor HR38; Short=dHR38;
AltName: Full=Nuclear receptor subfamily 4 group A
member 4
Length = 1073
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 744 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 803
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 804 CLVVGMVKEVVR 815
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+ L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 110 KELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 151
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 140 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 181
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 115 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 163
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 111 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 159
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 140 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 181
>gi|332023659|gb|EGI63885.1| Retinoic acid receptor RXR-alpha-A [Acromyrmex echinatior]
Length = 403
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 118 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 159
>gi|451774918|gb|AGF50212.1| ultraspiracle protein [Polyrhachis vicina]
Length = 424
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 135 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 176
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 153 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 194
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 118 KDLSYACREDKNCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 159
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 225 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 273
>gi|410914666|ref|XP_003970808.1| PREDICTED: glucocorticoid receptor-like [Takifugu rubripes]
Length = 765
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 15/63 (23%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCL+ M
Sbjct: 424 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLRAGM 481
Query: 56 NRD 58
N D
Sbjct: 482 NLD 484
>gi|169159129|dbj|BAG12083.1| thyroid hormone receptor beta [Thunnus orientalis]
Length = 395
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
N Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 65 NPTYACKYEGKCIIDKVTRNQCQECRFKKCIAVGMATDL 103
>gi|426246965|ref|XP_004017257.1| PREDICTED: mineralocorticoid receptor isoform 3 [Ovis aries]
Length = 990
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 9 CGVVSCQFVFVRNLE----------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 622 CG--SCKVFFKRAVEGKCSRGWQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 677
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 125 KDLSYACREERNCIIDKRQRNRCQYCRYQKCLSMGMKREAVQ 166
>gi|170031169|ref|XP_001843459.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167869235|gb|EDS32618.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 697
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN Y CK +G C VD T RNQC+ACR SKC Q MN+D
Sbjct: 185 RNRVYTCKAAGELKGRCPVDKTHRNQCRACRLSKCFQSAMNKDA 228
>gi|399498506|ref|NP_001257783.1| thyroid hormone receptor beta isoform 2 [Rattus norvegicus]
gi|149040004|gb|EDL94088.1| thyroid hormone receptor beta, isoform CRA_b [Rattus norvegicus]
gi|149040005|gb|EDL94089.1| thyroid hormone receptor beta, isoform CRA_b [Rattus norvegicus]
Length = 461
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|74182672|dbj|BAE34683.1| unnamed protein product [Mus musculus]
Length = 461
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|52843266|gb|AAU88062.1| estrogen receptor-related receptor long isoform [Branchiostoma
floridae]
Length = 496
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF+KCL+V M ++ RL
Sbjct: 127 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFTKCLKVGMLKEGVRL 180
>gi|417411185|gb|JAA52038.1| Putative steroid hormone nuclear receptor, partial [Desmodus
rotundus]
Length = 495
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 21 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLKKCLALGMSRDAVKF 80
Query: 63 G 63
G
Sbjct: 81 G 81
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 118 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 159
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ ++G
Sbjct: 112 KDLTYACREDRSCTIDKRQRNRCQFCRYQKCLSMGMKREAVQVG 155
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 108 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 156
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 216 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 264
>gi|330368231|gb|AEC11554.1| dominant positive thyroid hormone receptor [Xenopus transgenesis
plasmid pDRTREdpTR-HS4]
Length = 873
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 181 CKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDL 232
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 65 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 113
>gi|391339168|ref|XP_003743924.1| PREDICTED: probable nuclear hormone receptor HR3-like [Metaseiulus
occidentalis]
Length = 720
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KCL + M+RD +
Sbjct: 241 GVITCEGCKGFFRRSQSSVVNYQCPRQKNCVVDRVNRNRCQYCRLQKCLALGMSRDAVKF 300
Query: 63 G 63
G
Sbjct: 301 G 301
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 75 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 123
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 226 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 274
>gi|164663877|ref|NP_001106888.1| thyroid hormone receptor beta isoform 1 [Mus musculus]
gi|586093|sp|P37242.1|THB_MOUSE RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
gi|238332|gb|AAB20226.1| hormone receptor beta subunit [Mus sp.]
gi|148688699|gb|EDL20646.1| thyroid hormone receptor beta, isoform CRA_a [Mus musculus]
Length = 461
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 107 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 155
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 228 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 276
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>gi|391328748|ref|XP_003738846.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Metaseiulus occidentalis]
Length = 524
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 20 RNLEYVCKE----RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN Y CK +G C +D T RNQC+ACR KC + MN+D +
Sbjct: 64 RNRVYTCKAQGDFKGKCPIDKTHRNQCRACRLKKCFEASMNKDAVQ 109
>gi|301626790|ref|XP_002942574.1| PREDICTED: nuclear receptor subfamily 4 group A member 3-like,
partial [Xenopus (Silurana) tropicalis]
Length = 517
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R ++ YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 277 CKGFFKRTVQKKAKYVCLANKNCPVDKRRRNRCQYCRFQKCLNVGMVKEVVR 328
>gi|291389177|ref|XP_002711239.1| PREDICTED: nuclear receptor subfamily 4, group A, member 1
[Oryctolagus cuniculus]
Length = 590
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLATKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>gi|183637599|gb|ACC64601.1| RAR-related orphan receptor C isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 517
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQNCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|427785707|gb|JAA58305.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 433
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +C++D +RN+CQ CR+ KCL M R+ +
Sbjct: 142 KDLTYACREERNCVIDKRQRNRCQYCRYQKCLSCGMKREAVQ 183
>gi|47086127|ref|NP_998119.1| estrogen-related receptor gamma [Danio rerio]
gi|45479150|gb|AAS66636.1| estrogen-related receptor gamma [Danio rerio]
Length = 435
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF KCL V M R+ RL
Sbjct: 124 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLTVGMMREGVRL 177
>gi|341882910|gb|EGT38845.1| hypothetical protein CAEBREN_04090 [Caenorhabditis brenneri]
Length = 515
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KC+++ M+RD +
Sbjct: 101 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKF 160
Query: 63 G 63
G
Sbjct: 161 G 161
>gi|335298750|ref|XP_001928500.3| PREDICTED: thyroid hormone receptor beta [Sus scrofa]
Length = 461
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYACKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ +CIVD +RN+CQ CR+ KC+ + M R+ +
Sbjct: 242 KDLHYACRDEKNCIVDKRQRNRCQYCRYQKCIAMGMRREAVQ 283
>gi|426234287|ref|XP_004011128.1| PREDICTED: LOW QUALITY PROTEIN: steroid hormone receptor ERR2 [Ovis
aries]
Length = 448
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV +C+ V F R N+EY C C + RR CQACRF KCL+V M ++ RL
Sbjct: 97 GVAACEAVVWFFRETLRSNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 156
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ +G
Sbjct: 145 KDLTYACREERGCTIDKRQRNRCQYCRYQKCLSMGMKREAVLVG 188
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 51 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 99
>gi|195155258|ref|XP_002018522.1| GL17752 [Drosophila persimilis]
gi|194114318|gb|EDW36361.1| GL17752 [Drosophila persimilis]
Length = 333
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R L Y C+ G CIVD RNQCQACR KCLQ+ MN+D
Sbjct: 186 RKLIYRCQAGTGRCIVDKAHRNQCQACRLKKCLQMGMNKDA 226
>gi|52843268|gb|AAU88063.1| estrogen receptor-related receptor short isoform [Branchiostoma
floridae]
Length = 455
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF+KCL+V M ++ RL
Sbjct: 127 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFTKCLKVGMLKEGVRL 180
>gi|586094|sp|P18113.2|THB_RAT RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
Length = 461
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|360045180|emb|CCD82728.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G CI+D RNQCQACR KC+++ MN+D +
Sbjct: 261 RKLIYRCQAGNGLCIIDKAHRNQCQACRMKKCIRMGMNKDAVQ 303
>gi|158299692|ref|XP_319750.4| AGAP009002-PA [Anopheles gambiae str. PEST]
gi|157013639|gb|EAA14853.4| AGAP009002-PA [Anopheles gambiae str. PEST]
Length = 639
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 47 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 106
Query: 63 G 63
G
Sbjct: 107 G 107
>gi|157123672|ref|XP_001660273.1| expressed protein (HR3) [Aedes aegypti]
gi|108874313|gb|EAT38538.1| AAEL009588-PA [Aedes aegypti]
Length = 468
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 45 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 104
Query: 63 G 63
G
Sbjct: 105 G 105
>gi|256086655|ref|XP_002579512.1| photoreceptor-specific nuclear receptor related [Schistosoma
mansoni]
Length = 567
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G CI+D RNQCQACR KC+++ MN+D +
Sbjct: 261 RKLIYRCQAGNGLCIIDKAHRNQCQACRMKKCIRMGMNKDAVQ 303
>gi|195434034|ref|XP_002065008.1| GK14909 [Drosophila willistoni]
gi|194161093|gb|EDW75994.1| GK14909 [Drosophila willistoni]
Length = 878
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 549 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 608
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 609 CLVVGMVKEVVR 620
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 98 KDLSYACREEKNCLIDKRQRNRCQYCRYQKCLVMGMKREAVQ 139
>gi|7110506|gb|AAF36970.1|AF230281_1 nuclear receptor 3 [Aedes aegypti]
Length = 468
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 45 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 104
Query: 63 G 63
G
Sbjct: 105 G 105
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 40 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 88
>gi|338725065|ref|XP_001916080.2| PREDICTED: nuclear receptor ROR-gamma [Equus caballus]
Length = 518
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 229 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 277
>gi|410968382|ref|XP_003990686.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Felis catus]
Length = 518
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVVYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|354501844|ref|XP_003512998.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Cricetulus
griseus]
Length = 521
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|296489562|tpg|DAA31675.1| TPA: RAR-related orphan receptor C [Bos taurus]
Length = 506
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
++L Y C+E CI+D +RN+CQ CR+ KCL + M R+
Sbjct: 140 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKRE 178
>gi|328791756|ref|XP_392128.4| PREDICTED: probable nuclear hormone receptor HR3 [Apis mellifera]
Length = 522
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 84 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 143
Query: 63 G 63
G
Sbjct: 144 G 144
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 226 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 274
>gi|146742358|gb|ABQ42696.1| estrogen receptor [Branchiostoma floridae]
Length = 491
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 14 CQFVFVRNLE-----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R+++ Y+C C +D RR CQACR+ KCL V M +D R G
Sbjct: 103 CKAFFKRSIQQGQTDYICPGTNQCTIDRNRRKSCQACRYRKCLMVGMTKDGRRSG 157
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ +CIVD +RN+CQ CR+ KC+ + M R+ +
Sbjct: 208 KDLHYACRDEKNCIVDKRQRNRCQYCRYQKCIAMGMRREAVQ 249
>gi|242000854|ref|XP_002435070.1| retinoid X receptor, putative [Ixodes scapularis]
gi|215498400|gb|EEC07894.1| retinoid X receptor, putative [Ixodes scapularis]
Length = 400
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +CI+D +RN+CQ CR+ KCL M R+ +
Sbjct: 112 KDLTYACREERNCIIDKRQRNRCQYCRYQKCLSCGMKREAVQ 153
>gi|203419|gb|AAA40916.1| thyroid hormone receptor [Rattus norvegicus]
Length = 456
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 122 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 173
>gi|426331483|ref|XP_004026710.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Gorilla gorilla
gorilla]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|623567|gb|AAA60743.1| thyroid hormone receptor [Rattus norvegicus]
Length = 461
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|74227383|dbj|BAE21770.1| unnamed protein product [Mus musculus]
Length = 385
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 51 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 102
>gi|355745653|gb|EHH50278.1| hypothetical protein EGM_01084 [Macaca fascicularis]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 159 KDLSYTCRDSKECVIDKRQRNRCQYCRYQKCLAMGMKREAVQ 200
>gi|297279987|ref|XP_002801824.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 1 [Macaca
mulatta]
gi|355558432|gb|EHH15212.1| hypothetical protein EGK_01272 [Macaca mulatta]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|121484050|gb|ABM54351.1| NR2E1 [Pan paniscus]
gi|122892562|gb|ABM67332.1| NR2E1 [Hylobates klossii]
Length = 77
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 37 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKD 77
>gi|6678343|ref|NP_033406.1| thyroid hormone receptor beta isoform 2 [Mus musculus]
gi|558456|gb|AAA86957.1| beta 2 thyroid hormone receptor [Mus musculus]
gi|110645784|gb|AAI19553.1| Thyroid hormone receptor beta [Mus musculus]
gi|110645786|gb|AAI19554.1| Thyroid hormone receptor beta [Mus musculus]
gi|111598818|gb|AAH89035.1| Thyroid hormone receptor beta [Mus musculus]
gi|148688700|gb|EDL20647.1| thyroid hormone receptor beta, isoform CRA_b [Mus musculus]
Length = 475
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 141 CKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 192
>gi|397492738|ref|XP_003817277.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan paniscus]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|194391110|dbj|BAG60673.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 226 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 274
>gi|432115887|gb|ELK37032.1| Thyroid hormone receptor beta [Myotis davidii]
Length = 468
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 134 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 185
>gi|758420|gb|AAA64751.1| ROR gamma [Homo sapiens]
Length = 560
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|332810309|ref|XP_003308439.1| PREDICTED: nuclear receptor ROR-gamma isoform 4 [Pan troglodytes]
Length = 572
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 98 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 157
Query: 63 G 63
G
Sbjct: 158 G 158
>gi|148616191|gb|ABQ96862.1| thyroid hormone receptor beta [Acanthopagrus schlegelii]
Length = 395
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
N Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 65 NPTYACKYEGKCIIDKVTRNQCQECRFKKCIAVGMATDL 103
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P
Sbjct: 43 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP 90
>gi|297491332|ref|XP_002698801.1| PREDICTED: thyroid hormone receptor beta [Bos taurus]
gi|296472290|tpg|DAA14405.1| TPA: thyroid hormone receptor, beta [Bos taurus]
Length = 520
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 186 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 237
>gi|291228691|ref|XP_002734320.1| PREDICTED: nuclear receptor subfamily 1, group D, member 1-like
[Saccoglossus kowalevskii]
Length = 803
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R++ Y C + C + + RNQCQ CR+ KC V M++D +RLG
Sbjct: 126 CKGFFRRSISQHTSYTCTNKEMCDISIYTRNQCQLCRWRKCCSVGMSKDASRLG 179
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ ++G
Sbjct: 107 KDLTYACREDRACTIDKRQRNRCQYCRYQKCLGMGMKREAVQVG 150
>gi|410968384|ref|XP_003990687.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Felis catus]
Length = 497
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQQCNVVYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 106 RNLTYSCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 154
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 105 RNLTYSCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 153
>gi|1435193|gb|AAC47163.1| hormone receptor 3 [Choristoneura fumiferana]
Length = 546
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M RD +
Sbjct: 115 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMRRDAVKF 174
Query: 63 G 63
G
Sbjct: 175 G 175
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPT 160
>gi|427795311|gb|JAA63107.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Rhipicephalus pulchellus]
Length = 700
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R ++ YVC C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 387 CKGFFKRTVQKGAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 438
>gi|351697568|gb|EHB00487.1| Nuclear receptor subfamily 4 group A member 1 [Heterocephalus
glaber]
Length = 598
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR E Y+C C VD RRN+CQ CRF K
Sbjct: 294 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 353
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 354 CLAVGMVKEVVR 365
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L+Y C++ C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 251 KDLQYACRDEKSCLIDKRQRNRCQFCRYMKCLSMGMKREAVQ 292
>gi|2895868|gb|AAC03056.1| ultraspiracle [Chironomus tentans]
Length = 552
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E +C++D +RN+CQ CR+ KCL M R+ +
Sbjct: 227 KDLSYACREERNCVIDKKQRNRCQYCRYQKCLNCGMKREAVQ 268
>gi|6754216|ref|NP_034574.1| nuclear receptor subfamily 4 group A member 1 [Mus musculus]
gi|128911|sp|P12813.1|NR4A1_MOUSE RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=Nuclear hormone receptor NUR/77; AltName:
Full=Nuclear protein N10; AltName: Full=Orphan nuclear
receptor HMR
gi|53313|emb|CAA34862.1| N10 nuclear protein [Mus musculus]
gi|200116|gb|AAA39843.1| thyroid hormone receptor [Mus musculus]
gi|12836082|dbj|BAB23493.1| unnamed protein product [Mus musculus]
gi|13435840|gb|AAH04770.1| Nuclear receptor subfamily 4, group A, member 1 [Mus musculus]
gi|71059903|emb|CAJ18495.1| Nr4a1 [Mus musculus]
gi|74178647|dbj|BAE33997.1| unnamed protein product [Mus musculus]
gi|148672107|gb|EDL04054.1| nuclear receptor subfamily 4, group A, member 1 [Mus musculus]
Length = 601
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR E Y+C C VD RRN+CQ CRF K
Sbjct: 270 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 329
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 330 CLAVGMVKEVVR 341
>gi|53315|emb|CAA42718.1| N10 nuclear protein [Mus musculus]
Length = 601
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR E Y+C C VD RRN+CQ CRF K
Sbjct: 270 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 329
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 330 CLAVGMVKEVVR 341
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 150 GVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 208
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVS 149
>gi|237688379|gb|ACR15148.1| thyroid hormone receptor [Branchiostoma belcheri tsingtauense]
Length = 429
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
++L+Y CK G C+ D T RNQCQ CRF KC++V M D+
Sbjct: 84 KDLKYSCKYAGDCVADKTTRNQCQECRFKKCVRVGMATDL 123
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 174 KDLTYTCRDNKDCIIDKRQRNRCQYCRYQKCLAMGMKREAVQ 215
>gi|3098336|gb|AAC15589.1| retinoid X receptor [Amblyomma americanum]
Length = 414
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C+E C+VD +RN+CQ CR+ KCL M R+ +
Sbjct: 112 KDLTYACREERRCVVDKRQRNRCQYCRYQKCLMCGMKREAVQ 153
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPT 160
>gi|189239421|ref|XP_974561.2| PREDICTED: similar to HR3 [Tribolium castaneum]
Length = 499
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 72 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 131
Query: 63 G 63
G
Sbjct: 132 G 132
>gi|169743247|gb|ACA66245.1| thyroid hormone receptor beta isoform 2 [Oryctolagus cuniculus]
Length = 421
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 87 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVDMATDL 138
>gi|2078499|gb|AAB54059.1| hormone receptor 3C [Choristoneura fumiferana]
Length = 651
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M RD +
Sbjct: 47 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMRRDAVKF 106
Query: 63 G 63
G
Sbjct: 107 G 107
>gi|395540269|ref|XP_003772079.1| PREDICTED: thyroid hormone receptor beta [Sarcophilus harrisii]
Length = 474
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 140 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 191
>gi|383861783|ref|XP_003706364.1| PREDICTED: probable nuclear hormone receptor HR3-like [Megachile
rotundata]
Length = 521
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 83 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 142
Query: 63 G 63
G
Sbjct: 143 G 143
>gi|340709667|ref|XP_003393424.1| PREDICTED: probable nuclear hormone receptor HR3-like [Bombus
terrestris]
Length = 522
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 84 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 143
Query: 63 G 63
G
Sbjct: 144 G 144
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C+VD +RN+CQ CR+ KCL + M R+ R
Sbjct: 120 KDLSYTCRDNKECLVDKRQRNRCQYCRYQKCLAMGMKREGMR 161
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 31 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPT 79
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 31 HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
+C +D RNQCQ CR KCL+V M R+
Sbjct: 458 NCPIDQHHRNQCQYCRLKKCLKVGMRREA 486
>gi|341895989|gb|EGT51924.1| hypothetical protein CAEBREN_02985 [Caenorhabditis brenneri]
Length = 457
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KC+++ M+RD +
Sbjct: 43 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKF 102
Query: 63 G 63
G
Sbjct: 103 G 103
>gi|170053585|ref|XP_001862743.1| tailless [Culex quinquefasciatus]
gi|167874052|gb|EDS37435.1| tailless [Culex quinquefasciatus]
Length = 397
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKERGH--CIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK + C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 63 RSRQYVCKSKSETPCMVDKTHRNQCRACRLKKCFEVGMNKDAVQ 106
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPT 160
>gi|427796259|gb|JAA63581.1| Putative nuclear receptor of the nerve growth factor-induced
protein b type, partial [Rhipicephalus pulchellus]
Length = 705
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
C+ F R ++ YVC C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 392 CKGFFKRTVQKGAKYVCLANRDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 443
>gi|334324576|ref|XP_001372023.2| PREDICTED: nuclear receptor ROR-gamma [Monodelphis domestica]
Length = 530
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + C +D T RN+CQ CR KCL + M+RD +
Sbjct: 60 GVITCEGCKGFFRRSQQCNVAYSCTRQQSCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 119
Query: 63 G 63
G
Sbjct: 120 G 120
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 150 GVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 208
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C VD RNQCQACR KCLQ MN+D +
Sbjct: 65 RKLIYRCQAGTGMCPVDKAHRNQCQACRLKKCLQAGMNKDAVQ 107
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C+VD RNQCQACR KCLQ+ MN+D +
Sbjct: 90 RKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQ 132
>gi|14133772|gb|AAK54127.1|AF367206_1 nuclear receptor nhr-7A [Dirofilaria immitis]
Length = 556
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
+ +EY C G C + RN+CQ CRF KCL V M+RD R G
Sbjct: 193 KQMEYRCLRDGKCHIHRLNRNRCQFCRFRKCLAVGMSRDSVRYG 236
>gi|74213690|dbj|BAE35645.1| unnamed protein product [Mus musculus]
Length = 516
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR +KC+++ M R+ + G PS
Sbjct: 109 RNLSYTCRGNRNCPIDQHHRNQCQYCRLNKCVKIGMRREAVQRGRMPPS 157
>gi|426331479|ref|XP_004026708.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Gorilla gorilla
gorilla]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|188536040|ref|NP_035411.2| nuclear receptor ROR-gamma [Mus musculus]
gi|15928672|gb|AAH14804.1| RAR-related orphan receptor gamma [Mus musculus]
gi|117616722|gb|ABK42379.1| TOR [synthetic construct]
Length = 516
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|350419474|ref|XP_003492193.1| PREDICTED: probable nuclear hormone receptor HR3-like [Bombus
impatiens]
Length = 512
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C +C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 74 GVITCEGCKGFFRRSQSSVVNYQCPRNKNCVVDRVNRNRCQYCRLQKCLRLGMSRDAVKF 133
Query: 63 G 63
G
Sbjct: 134 G 134
>gi|348580647|ref|XP_003476090.1| PREDICTED: nuclear receptor subfamily 4 group A member 1-like
[Cavia porcellus]
Length = 677
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR E Y+C C VD RRN+CQ CRF K
Sbjct: 346 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 405
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 406 CLAVGMVKEVVR 417
>gi|157821179|ref|NP_001100304.1| nuclear receptor ROR-alpha [Rattus norvegicus]
gi|149028879|gb|EDL84220.1| RAR-related orphan receptor alpha (predicted) [Rattus norvegicus]
Length = 309
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQF--VFVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>gi|1710639|sp|P51450.1|RORG_MOUSE RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma; AltName:
Full=Thymus orphan receptor; Short=TOR
gi|1155341|gb|AAB40709.1| RORgamma orphan nuclear receptor [Mus musculus]
gi|2674083|gb|AAC53501.1| nuclear orphan receptor RORgamma [Mus musculus]
Length = 516
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|399498497|ref|NP_077364.2| nuclear receptor subfamily 4 group A member 1 [Rattus norvegicus]
gi|1709263|sp|P22829.2|NR4A1_RAT RecName: Full=Nuclear receptor subfamily 4 group A member 1;
AltName: Full=NUR77; AltName: Full=Nerve growth
factor-induced protein I-B; Short=NGFI-B; AltName:
Full=Orphan nuclear receptor HMR
gi|149031991|gb|EDL86903.1| nuclear receptor subfamily 4, group A, member 1 [Rattus norvegicus]
Length = 597
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG SCQ VR E Y+C C VD RRN+CQ CRF K
Sbjct: 266 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 325
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 326 CLAVGMVKEVVR 337
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVS 152
>gi|378705842|gb|AFC34773.1| RORgamma1 [Ctenopharyngodon idella]
Length = 479
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 14 CQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD + G
Sbjct: 30 CKGFFRRSQQNNAIYSCSRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFG 83
>gi|345782792|ref|XP_540323.3| PREDICTED: nuclear receptor ROR-gamma [Canis lupus familiaris]
Length = 500
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 26 GVITCEGCKGFFRRSQQCNVVYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 85
Query: 63 G 63
G
Sbjct: 86 G 86
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G+C VD RNQCQACR KCL + MN+D +
Sbjct: 157 RKLIYRCQAGTGNCTVDKAHRNQCQACRLKKCLNMGMNKDAVQ 199
>gi|145386519|ref|NP_036804.2| thyroid hormone receptor beta isoform 1 [Rattus norvegicus]
gi|76097020|gb|ABA39294.1| thyroid hormone receptor beta delta variant [Rattus norvegicus]
Length = 497
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 24 YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 179 YSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 214
>gi|2133484|pir||I45067 steroid hormone receptor family member CNR3 - Caenorhabditis
elegans
gi|538371|gb|AAA96983.1| steroid hormone receptor family member CHR3 [Caenorhabditis
elegans]
Length = 553
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KC+++ M+RD +
Sbjct: 141 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKF 200
Query: 63 G 63
G
Sbjct: 201 G 201
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT--RLGFW 65
++L Y C+E C +D +RN+CQ CR+ KCL + M R+ R G W
Sbjct: 102 KDLTYACREERSCTIDKRQRNRCQYCRYQKCLTMGMKREAAGHRRGQW 149
>gi|62897835|dbj|BAD96857.1| RAR-related orphan receptor C isoform a variant [Homo sapiens]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 143 GVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 201
>gi|71980508|ref|NP_001020976.1| Protein NHR-23, isoform b [Caenorhabditis elegans]
gi|1255257|gb|AAA96057.1| CHR3 [Caenorhabditis elegans]
gi|20338930|emb|CAD30427.1| Protein NHR-23, isoform b [Caenorhabditis elegans]
Length = 553
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C + +C+VD RN+CQ CR KC+++ M+RD +
Sbjct: 141 GVITCEGCKGFFRRSQSSIVNYQCPRQKNCVVDRVNRNRCQYCRLKKCIELGMSRDAVKF 200
Query: 63 G 63
G
Sbjct: 201 G 201
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVS 152
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 137 GVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 195
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 10 RNLTYSCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 58
>gi|298676423|ref|NP_001177320.1| thyroid hormone receptor beta [Ovis aries]
gi|297241705|gb|ADI24672.1| thyroid hormone receptor beta isoform [Ovis aries]
Length = 459
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 125 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 176
>gi|296228217|ref|XP_002759704.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Callithrix
jacchus]
Length = 461
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|291399720|ref|XP_002716263.1| PREDICTED: thyroid hormone receptor, beta (erythroblastic leukemia
viral (v-erb-a) oncogene homolog 2, avian) [Oryctolagus
cuniculus]
Length = 476
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 142 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 193
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
RNL Y C+ C +D RNQCQ CR KC +V M ++ + G
Sbjct: 424 RNLSYTCRSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRG 467
>gi|397492734|ref|XP_003817275.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan paniscus]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+
Sbjct: 112 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVS 152
>gi|410971531|ref|XP_003992221.1| PREDICTED: thyroid hormone receptor beta [Felis catus]
Length = 461
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67
RNL Y C+ C +D RNQCQ CR KCL+V M R+ + G P
Sbjct: 139 RNLNYTCRGNRSCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP 186
>gi|301785325|ref|XP_002928077.1| PREDICTED: thyroid hormone receptor beta-like [Ailuropoda
melanoleuca]
Length = 467
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 133 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 184
>gi|19743909|ref|NP_005051.2| nuclear receptor ROR-gamma isoform a [Homo sapiens]
gi|49066040|sp|P51449.2|RORG_HUMAN RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|21594880|gb|AAH31554.1| RAR-related orphan receptor C [Homo sapiens]
gi|48146989|emb|CAG33717.1| RORC [Homo sapiens]
gi|83405146|gb|AAI10572.1| RAR-related orphan receptor C [Homo sapiens]
gi|123979804|gb|ABM81731.1| RAR-related orphan receptor C [synthetic construct]
gi|123994569|gb|ABM84886.1| RAR-related orphan receptor C [synthetic construct]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|332810303|ref|XP_003308436.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan troglodytes]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
RNL Y C+ +C +D RNQCQ CR KCL+V M R+V+
Sbjct: 117 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREVS 157
>gi|161339211|gb|AAT08962.2| PHR3 [Plodia interpunctella]
Length = 539
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 117 GVITCEGCKGFFRRSQSTVVNYQCPRNKACVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 176
Query: 63 G 63
G
Sbjct: 177 G 177
>gi|6094474|sp|Q91279.1|THB_PAROL RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|639677|dbj|BAA08201.1| thyroid hormone receptor beta [Paralichthys olivaceus]
Length = 395
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
N Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 65 NPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDL 103
>gi|403302650|ref|XP_003941967.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|402856160|ref|XP_003892665.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Papio anubis]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 20 RNLEYVCKE-RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R L Y C+ G C VD RNQCQACR KC+Q MN+D +
Sbjct: 89 RKLIYRCQAGTGLCTVDKAHRNQCQACRLKKCMQTGMNKDAVQ 131
>gi|157278123|ref|NP_001098160.1| thyroid hormone receptor beta [Oryzias latipes]
gi|42794040|dbj|BAD11773.1| thyroid hormone receptor beta [Oryzias latipes]
Length = 378
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
N Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 48 NPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDL 86
>gi|195580475|ref|XP_002080061.1| GD21688 [Drosophila simulans]
gi|194192070|gb|EDX05646.1| GD21688 [Drosophila simulans]
Length = 556
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 227 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 286
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 287 CLVVGMVKEVVR 298
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 104 GVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 162
>gi|189055044|dbj|BAG38028.1| unnamed protein product [Homo sapiens]
Length = 518
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 222 KDLSYTCRDSKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQ 263
>gi|84028529|gb|ABC49723.1| thyroid hormone receptor 2 [Petromyzon marinus]
Length = 440
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G CI+D RNQCQ CR+ KC+ V M D+
Sbjct: 105 CKGFFRRTIQKNLHPSYACKYEGSCIIDRITRNQCQECRYQKCIAVGMASDL 156
>gi|348506580|ref|XP_003440836.1| PREDICTED: estrogen-related receptor gamma-like [Oreochromis
niloticus]
Length = 440
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF KCL V M R+ RL
Sbjct: 122 ACKAFFKRTIQGNIEYSCPASNECEITKRRRKSCQACRFVKCLAVGMLREGVRL 175
>gi|197127315|gb|ACH43813.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 209
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL V M R+ + G P+
Sbjct: 105 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLXVGMRREAVQRGRMPPT 153
>gi|296279072|gb|ADH04374.1| thyroid hormone receptor beta2delta [Rattus norvegicus]
Length = 511
Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 24 YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
Y CK G CI+D RNQCQ CRF KC+ V M D+
Sbjct: 193 YSCKYEGKCIIDKVTRNQCQECRFKKCIYVGMATDL 228
>gi|432095105|gb|ELK26489.1| Estrogen receptor [Myotis davidii]
Length = 384
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 14 CQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSF 69
C+ F R+++ Y+C C +D RR CQACR KC +V M + R +PS
Sbjct: 32 CKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGDMRAASLWPSP 91
Query: 70 LL 71
LL
Sbjct: 92 LL 93
>gi|345789103|ref|XP_862690.2| PREDICTED: thyroid hormone receptor beta isoform 10 [Canis lupus
familiaris]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|169743245|gb|ACA66244.1| thyroid hormone receptor beta isoform 1 [Oryctolagus cuniculus]
Length = 456
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 122 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 173
>gi|31207|emb|CAA28412.1| put.thyroid hormone receptor [Homo sapiens]
gi|180253|gb|AAA35677.1| c-erbA [Homo sapiens]
gi|225391|prf||1301322A thyroid hormone receptor
Length = 456
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 122 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 173
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 141 GVYSCEGCKGFFKRTIRKDLTYTCRDNKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 199
>gi|351702700|gb|EHB05619.1| Nuclear receptor ROR-gamma, partial [Heterocephalus glaber]
Length = 496
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N+ Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 21 GVITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 80
Query: 63 G 63
G
Sbjct: 81 G 81
>gi|297595170|gb|ADI48101.1| thyroid hormone receptor b long isoform [Sciaenops ocellatus]
Length = 395
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 21 NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
N Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 65 NPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDL 103
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNR 57
++L Y C+E CI+D +RN+CQ CR+ KCL + M R
Sbjct: 140 KDLSYACREEKSCIIDKRQRNRCQYCRYQKCLAMGMKR 177
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 GVVSCQ-------FVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
GV SC+ ++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 104 GVYSCEGCKGFFKRTIRKDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 162
>gi|444511394|gb|ELV09859.1| Thyroid hormone receptor beta [Tupaia chinensis]
Length = 456
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 122 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 173
>gi|426331477|ref|XP_004026707.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Gorilla gorilla
gorilla]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|197102124|ref|NP_001125682.1| nuclear receptor ROR-gamma [Pongo abelii]
gi|75061866|sp|Q5RAP4.1|RORG_PONAB RecName: Full=Nuclear receptor ROR-gamma; AltName: Full=Nuclear
receptor RZR-gamma; AltName: Full=Nuclear receptor
subfamily 1 group F member 3; AltName:
Full=Retinoid-related orphan receptor-gamma
gi|55728856|emb|CAH91166.1| hypothetical protein [Pongo abelii]
Length = 518
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|3915110|sp|Q28571.1|THB_SHEEP RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2
gi|1136118|emb|CAA92649.1| thyroid hormone receptor [Ovis aries]
Length = 411
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 125 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 176
>gi|395816618|ref|XP_003781795.1| PREDICTED: thyroid hormone receptor beta [Otolemur garnettii]
Length = 460
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 126 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 177
>gi|380783781|gb|AFE63766.1| thyroid hormone receptor beta [Macaca mulatta]
gi|380783783|gb|AFE63767.1| thyroid hormone receptor beta [Macaca mulatta]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+ L Y C+E +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 65 KELSYACREEKNCIIDKRQRNRCQYCRYQKCLTMGMKREAVQ 106
>gi|351705194|gb|EHB08113.1| Thyroid hormone receptor beta [Heterocephalus glaber]
Length = 476
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 142 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 193
>gi|426331481|ref|XP_004026709.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Gorilla gorilla
gorilla]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|313217880|emb|CBY41273.1| unnamed protein product [Oikopleura dioica]
Length = 245
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ C +D RNQCQ CR KCL+V M R+ + G P
Sbjct: 139 RNLNYTCRGNRSCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPG 187
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 133 KDLTYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKREAVQ 174
>gi|40806162|ref|NP_000452.2| thyroid hormone receptor beta [Homo sapiens]
gi|189491769|ref|NP_001121648.1| thyroid hormone receptor beta [Homo sapiens]
gi|189491771|ref|NP_001121649.1| thyroid hormone receptor beta [Homo sapiens]
gi|358001057|ref|NP_001239563.1| thyroid hormone receptor beta [Homo sapiens]
gi|114585713|ref|XP_001163850.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Pan
troglodytes]
gi|114585717|ref|XP_001163914.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Pan
troglodytes]
gi|114585723|ref|XP_001164073.1| PREDICTED: thyroid hormone receptor beta isoform 8 [Pan
troglodytes]
gi|114585727|ref|XP_001164153.1| PREDICTED: thyroid hormone receptor beta isoform 10 [Pan
troglodytes]
gi|332215366|ref|XP_003256814.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Nomascus
leucogenys]
gi|332215368|ref|XP_003256815.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Nomascus
leucogenys]
gi|332215370|ref|XP_003256816.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Nomascus
leucogenys]
gi|397511699|ref|XP_003826205.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Pan paniscus]
gi|397511701|ref|XP_003826206.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Pan paniscus]
gi|397511703|ref|XP_003826207.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Pan paniscus]
gi|397511705|ref|XP_003826208.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Pan paniscus]
gi|426339732|ref|XP_004033797.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Gorilla gorilla
gorilla]
gi|426339734|ref|XP_004033798.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Gorilla gorilla
gorilla]
gi|426339736|ref|XP_004033799.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Gorilla gorilla
gorilla]
gi|426339738|ref|XP_004033800.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Gorilla gorilla
gorilla]
gi|441611020|ref|XP_004087984.1| PREDICTED: thyroid hormone receptor beta [Nomascus leucogenys]
gi|586092|sp|P10828.2|THB_HUMAN RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear
receptor subfamily 1 group A member 2; AltName:
Full=c-erbA-2; AltName: Full=c-erbA-beta
gi|76827091|gb|AAI06930.1| Thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Homo sapiens]
gi|76827895|gb|AAI06931.1| THRB protein [Homo sapiens]
gi|119584749|gb|EAW64345.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584750|gb|EAW64346.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584751|gb|EAW64347.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584752|gb|EAW64348.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|119584753|gb|EAW64349.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian), isoform CRA_a
[Homo sapiens]
gi|167773517|gb|ABZ92193.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [synthetic
construct]
gi|168277450|dbj|BAG10703.1| thyroid hormone receptor beta-1 [synthetic construct]
gi|193788447|dbj|BAG53341.1| unnamed protein product [Homo sapiens]
gi|325495461|gb|ADZ17336.1| thyroid hormone nuclear receptor beta variant 1 [Homo sapiens]
gi|410211582|gb|JAA03010.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410211584|gb|JAA03011.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410293620|gb|JAA25410.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
gi|410339269|gb|JAA38581.1| thyroid hormone receptor, beta (erythroblastic leukemia viral
(v-erb-a) oncogene homolog 2, avian) [Pan troglodytes]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ C++D +RN+CQ CR+ KCL + M R+ +
Sbjct: 168 KDLTYTCRDNKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQ 209
>gi|403289919|ref|XP_003936086.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Saimiri
boliviensis boliviensis]
gi|403289921|ref|XP_003936087.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Saimiri
boliviensis boliviensis]
gi|403289923|ref|XP_003936088.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Saimiri
boliviensis boliviensis]
gi|403289925|ref|XP_003936089.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Saimiri
boliviensis boliviensis]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|383420563|gb|AFH33495.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|383420561|gb|AFH33494.1| nuclear receptor ROR-gamma isoform b [Macaca mulatta]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|345327917|ref|XP_001506732.2| PREDICTED: thyroid hormone receptor beta-like [Ornithorhynchus
anatinus]
Length = 402
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 142 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 193
>gi|332220315|ref|XP_003259302.1| PREDICTED: nuclear receptor ROR-gamma [Nomascus leucogenys]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|297279991|ref|XP_002801826.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 3 [Macaca
mulatta]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|193783650|dbj|BAG53561.1| unnamed protein product [Homo sapiens]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|90080433|dbj|BAE89698.1| unnamed protein product [Macaca fascicularis]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|109052494|ref|XP_001090554.1| PREDICTED: thyroid hormone receptor beta-like isoform 1 [Macaca
mulatta]
gi|109052497|ref|XP_001090678.1| PREDICTED: thyroid hormone receptor beta-like isoform 2 [Macaca
mulatta]
gi|109052506|ref|XP_001091145.1| PREDICTED: thyroid hormone receptor beta-like isoform 6 [Macaca
mulatta]
gi|109052509|ref|XP_001091273.1| PREDICTED: thyroid hormone receptor beta-like isoform 7 [Macaca
mulatta]
gi|402861705|ref|XP_003895225.1| PREDICTED: thyroid hormone receptor beta isoform 1 [Papio anubis]
gi|402861707|ref|XP_003895226.1| PREDICTED: thyroid hormone receptor beta isoform 2 [Papio anubis]
gi|402861709|ref|XP_003895227.1| PREDICTED: thyroid hormone receptor beta isoform 3 [Papio anubis]
gi|402861711|ref|XP_003895228.1| PREDICTED: thyroid hormone receptor beta isoform 4 [Papio anubis]
Length = 461
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 127 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 178
>gi|432861682|ref|XP_004069686.1| PREDICTED: nuclear receptor ROR-alpha-like [Oryzias latipes]
Length = 519
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQF--VFVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 82 GVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 141
Query: 63 G 63
G
Sbjct: 142 G 142
>gi|1036837|gb|AAC46926.1| DHR38, partial [Drosophila melanogaster]
Length = 546
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 34/72 (47%), Gaps = 16/72 (22%)
Query: 6 CPDCG-VVSCQFVFVRNLE---------------YVCKERGHCIVDVTRRNQCQACRFSK 49
C CG +CQ VR E YVC +C VD RRN+CQ CRF K
Sbjct: 217 CAVCGDTAACQHYGVRTCEGCKGFFKRTVQKGSKYVCLADKNCPVDKRRRNRCQFCRFQK 276
Query: 50 CLQVKMNRDVTR 61
CL V M ++V R
Sbjct: 277 CLVVGMVKEVVR 288
>gi|332810305|ref|XP_003308437.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Pan troglodytes]
gi|397492732|ref|XP_003817274.1| PREDICTED: nuclear receptor ROR-gamma isoform 1 [Pan paniscus]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
RNLEY C+ C VD RNQCQ CR KC +V M R+ + G
Sbjct: 39 RNLEYQCRSNKKCPVDQHHRNQCQHCRLKKCFKVGMRREAVQSG 82
>gi|297279993|ref|XP_002801827.1| PREDICTED: nuclear receptor ROR-gamma-like isoform 4 [Macaca
mulatta]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
RNL Y C+ +C VD RNQCQ CR KCL+V M R+ + G
Sbjct: 127 RNLTYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREAVQRG 170
>gi|410908014|ref|XP_003967486.1| PREDICTED: nuclear receptor ROR-alpha-like [Takifugu rubripes]
Length = 519
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQF--VFVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 82 GVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 141
Query: 63 G 63
G
Sbjct: 142 G 142
>gi|403302652|ref|XP_003941968.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Saimiri
boliviensis boliviensis]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|397492736|ref|XP_003817276.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan paniscus]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|332810307|ref|XP_003308438.1| PREDICTED: nuclear receptor ROR-gamma isoform 3 [Pan troglodytes]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|216409700|dbj|BAH02287.1| retinoid-related orphan receptor gamma [Homo sapiens]
Length = 506
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 44 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 103
Query: 63 G 63
G
Sbjct: 104 G 104
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ CIVD +RN+CQ CR+ KCL M R+ +
Sbjct: 158 KDLTYTCRDSKDCIVDKRQRNRCQYCRYQKCLATGMKREAVQ 199
>gi|48255918|ref|NP_001001523.1| nuclear receptor ROR-gamma isoform b [Homo sapiens]
gi|21739737|emb|CAD38900.1| hypothetical protein [Homo sapiens]
gi|117646452|emb|CAL38693.1| hypothetical protein [synthetic construct]
gi|325495479|gb|ADZ17345.1| RAR-related orphan nuclear receptor variant 2 [Homo sapiens]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
++L Y C++ +CI+D +RN+CQ CR+ KCL + M R+ +
Sbjct: 156 KDLTYACRDDRNCIIDKRQRNRCQYCRYMKCLNMGMKREAVQ 197
>gi|402856162|ref|XP_003892666.1| PREDICTED: nuclear receptor ROR-gamma isoform 2 [Papio anubis]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSQRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|348505860|ref|XP_003440478.1| PREDICTED: nuclear receptor ROR-alpha-like [Oreochromis niloticus]
Length = 519
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQF--VFVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 82 GVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 141
Query: 63 G 63
G
Sbjct: 142 G 142
>gi|117646568|emb|CAL38751.1| hypothetical protein [synthetic construct]
Length = 497
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C +D T RN+CQ CR KCL + M+RD +
Sbjct: 23 GVITCEGCKGFFRRSRRCNAAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKF 82
Query: 63 G 63
G
Sbjct: 83 G 83
>gi|34484276|gb|AAQ72771.1| FTZ-F1 [Epinephelus coioides]
Length = 468
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 16/72 (22%)
Query: 6 CPDCG------------VVSCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSK 49
CP CG SC+ F R N +Y+C E+ C +D+T+R +C CRF K
Sbjct: 13 CPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKKYICAEKQDCRIDITQRKRCPFCRFQK 72
Query: 50 CLQVKMNRDVTR 61
CL V M + R
Sbjct: 73 CLHVGMRLEAVR 84
>gi|426377562|ref|XP_004055532.1| PREDICTED: steroid hormone receptor ERR2 [Gorilla gorilla gorilla]
Length = 508
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF KCL+V M ++ RL
Sbjct: 122 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 175
>gi|238550159|ref|NP_004443.3| steroid hormone receptor ERR2 [Homo sapiens]
gi|374095385|sp|O95718.2|ERR2_HUMAN RecName: Full=Steroid hormone receptor ERR2; AltName: Full=ERR
beta-2; AltName: Full=Estrogen receptor-like 2; AltName:
Full=Estrogen-related receptor beta; Short=ERR-beta;
AltName: Full=Nuclear receptor subfamily 3 group B
member 2
gi|42412385|gb|AAS15572.1| estrogen receptor-related receptor beta2-delta-10 [Homo sapiens]
gi|325495515|gb|ADZ17363.1| estrogen-related nuclear receptor beta [Homo sapiens]
Length = 508
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF KCL+V M ++ RL
Sbjct: 122 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 175
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
++L Y C++ CIVD +RN+CQ CR+ KCL M R+
Sbjct: 173 KDLTYTCRDTKGCIVDKRQRNRCQYCRYQKCLNTGMKRE 211
>gi|410048538|ref|XP_003952591.1| PREDICTED: steroid hormone receptor ERR2 [Pan troglodytes]
Length = 500
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 13 SCQFVFVR----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
+C+ F R N+EY C C + RR CQACRF KCL+V M ++ RL
Sbjct: 122 ACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRL 175
>gi|344288187|ref|XP_003415832.1| PREDICTED: thyroid hormone receptor beta [Loxodonta africana]
Length = 467
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 14 CQFVFVRNLE------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
C+ F R ++ Y CK G C++D RNQCQ CRF KC+ V M D+
Sbjct: 133 CKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDL 184
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.332 0.139 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,601,430,357
Number of Sequences: 23463169
Number of extensions: 50816053
Number of successful extensions: 109466
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6441
Number of HSP's successfully gapped in prelim test: 316
Number of HSP's that attempted gapping in prelim test: 102853
Number of HSP's gapped (non-prelim): 6884
length of query: 119
length of database: 8,064,228,071
effective HSP length: 86
effective length of query: 33
effective length of database: 6,046,395,537
effective search space: 199531052721
effective search space used: 199531052721
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 69 (31.2 bits)