BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9232
(119 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18102|TLL_DROME Protein tailless OS=Drosophila melanogaster GN=tll PE=2 SV=1
Length = 452
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>sp|O16845|TLL_DROVI Protein tailless OS=Drosophila virilis GN=tll PE=3 SV=1
Length = 450
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
R+ +YVCK ++G C+VD T RNQC+ACR KC +V MN+D +
Sbjct: 64 RSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVGMNKDAVQ 107
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D +
Sbjct: 46 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQ 89
>sp|P49844|GCR_XENLA Glucocorticoid receptor OS=Xenopus laevis GN=nr3c1 PE=2 SV=1
Length = 776
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>sp|Q95267|GCR_TUPBE Glucocorticoid receptor OS=Tupaia belangeri GN=NR3C1 PE=2 SV=1
Length = 776
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 437 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 491
>sp|O13186|GCR_SAIBB Glucocorticoid receptor OS=Saimiri boliviensis boliviensis GN=NR3C1
PE=2 SV=1
Length = 777
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|P06536|GCR_RAT Glucocorticoid receptor OS=Rattus norvegicus GN=Nr3c1 PE=1 SV=2
Length = 795
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 457 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 511
>sp|Q5R9P5|GCR_PONAB Glucocorticoid receptor OS=Pongo abelii GN=NR3C1 PE=2 SV=2
Length = 777
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|Q9N1U3|GCR_PIG Glucocorticoid receptor OS=Sus scrofa GN=NR3C1 PE=2 SV=3
Length = 782
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 443 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 497
>sp|P06537|GCR_MOUSE Glucocorticoid receptor OS=Mus musculus GN=Nr3c1 PE=1 SV=1
Length = 783
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 445 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 499
>sp|P04150|GCR_HUMAN Glucocorticoid receptor OS=Homo sapiens GN=NR3C1 PE=1 SV=1
Length = 777
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|P79686|GCR_AOTNA Glucocorticoid receptor OS=Aotus nancymaae GN=NR3C1 PE=2 SV=1
Length = 777
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCK--ERGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN YVCK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 46 RNRSYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 87
>sp|Q8VII8|MCR_MOUSE Mineralocorticoid receptor OS=Mus musculus GN=Nr3c2 PE=2 SV=2
Length = 978
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 9 CGVVSCQFVFVRNLE--YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 667
>sp|P49115|GCR_CAVPO Glucocorticoid receptor OS=Cavia porcellus GN=NR3C1 PE=2 SV=1
Length = 771
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 433 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRENCPACRYRKCLQAGMN 482
>sp|Q6XLJ0|GCR_CALJA Glucocorticoid receptor OS=Callithrix jacchus GN=NR3C1 PE=2 SV=1
Length = 777
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|O46567|GCR_SAISC Glucocorticoid receptor OS=Saimiri sciureus GN=NR3C1 PE=1 SV=1
Length = 778
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMN 487
>sp|P79269|GCR_SAGOE Glucocorticoid receptor OS=Saguinus oedipus GN=NR3C1 PE=2 SV=1
Length = 777
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 438 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 492
>sp|P22199|MCR_RAT Mineralocorticoid receptor OS=Rattus norvegicus GN=Nr3c2 PE=1 SV=1
Length = 981
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 621 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 670
>sp|Q9N0W8|MCR_SAISC Mineralocorticoid receptor OS=Saimiri sciureus GN=NR3C2 PE=2 SV=1
Length = 982
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN R
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMNLGARR 673
>sp|P08235|MCR_HUMAN Mineralocorticoid receptor OS=Homo sapiens GN=NR3C2 PE=1 SV=1
Length = 984
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>sp|Q29131|MCR_TUPBE Mineralocorticoid receptor OS=Tupaia belangeri GN=NR3C2 PE=2 SV=1
Length = 977
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>sp|Q92570|NR4A3_HUMAN Nuclear receptor subfamily 4 group A member 3 OS=Homo sapiens
GN=NR4A3 PE=2 SV=3
Length = 626
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 322 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 363
>sp|Q3YC04|MCR_AOTNA Mineralocorticoid receptor OS=Aotus nancymaae GN=NR3C2 PE=2 SV=1
Length = 984
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 620 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 669
>sp|Q4JM28|MCR_SAIBB Mineralocorticoid receptor OS=Saimiri boliviensis boliviensis
GN=NR3C2 PE=2 SV=1
Length = 982
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMN 56
CG SC+ F R +E Y+C R CI+D RR C ACR KCLQ MN
Sbjct: 619 CG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRLQKCLQAGMN 668
>sp|Q9QZB6|NR4A3_MOUSE Nuclear receptor subfamily 4 group A member 3 OS=Mus musculus
GN=Nr4a3 PE=2 SV=1
Length = 627
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 323 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 364
>sp|P51448|RORA_MOUSE Nuclear receptor ROR-alpha OS=Mus musculus GN=Rora PE=1 SV=1
Length = 523
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 86 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 145
Query: 63 G 63
G
Sbjct: 146 G 146
>sp|P51179|NR4A3_RAT Nuclear receptor subfamily 4 group A member 3 OS=Rattus norvegicus
GN=Nr4a3 PE=2 SV=1
Length = 628
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +YVC +C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 324 KNAKYVCLANKNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVR 365
>sp|P59667|GCR_RABIT Glucocorticoid receptor OS=Oryctolagus cuniculus GN=NR3C1 PE=2 SV=1
Length = 772
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 9 CGVVSCQFVFVRNLE----YVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
CG SC+ F R ++ Y+C R CI+D RR C ACR+ KCLQ MN + +
Sbjct: 433 CG--SCKVFFKRAVKGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARK 487
>sp|P35398|RORA_HUMAN Nuclear receptor ROR-alpha OS=Homo sapiens GN=RORA PE=1 SV=1
Length = 556
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL V M+RD +
Sbjct: 119 GVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKF 178
Query: 63 G 63
G
Sbjct: 179 G 179
>sp|P45446|RORB_RAT Nuclear receptor ROR-beta OS=Rattus norvegicus GN=Rorb PE=1 SV=3
Length = 470
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>sp|Q8R1B8|RORB_MOUSE Nuclear receptor ROR-beta OS=Mus musculus GN=Rorb PE=2 SV=3
Length = 470
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 20 RNLEYVCKE--RGHCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
RN Y+CK +G C VD T RNQC+ACR KCL+V MN+D
Sbjct: 57 RNRIYLCKSGSQGGCPVDKTHRNQCRACRLKKCLEVNMNKDA 98
>sp|Q92753|RORB_HUMAN Nuclear receptor ROR-beta OS=Homo sapiens GN=RORB PE=2 SV=3
Length = 470
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVR-----NLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R N Y C + +C++D T RN+CQ CR KCL + M+RD +
Sbjct: 34 GVITCEGCKGFFRRSQQNNASYSCPRQRNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKF 93
Query: 63 G 63
G
Sbjct: 94 G 94
>sp|O73673|GCR_PAROL Glucocorticoid receptor OS=Paralichthys olivaceus GN=nr3c1 PE=2
SV=1
Length = 807
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 462 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 519
Query: 56 NRDVTR 61
N + +
Sbjct: 520 NLEARK 525
>sp|P49843|GCR_ONCMY Glucocorticoid receptor OS=Oncorhynchus mykiss GN=nr3c1 PE=1 SV=1
Length = 758
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 15/66 (22%)
Query: 9 CGVVSCQFVFVRNLE-------------YVCKERGHCIVDVTRRNQCQACRFSKCLQVKM 55
CG SC+ F R +E Y+C R CI+D RR C ACRF KCLQ M
Sbjct: 404 CG--SCKVFFKRAVEGWRARQNTDGQHNYLCAGRNDCIIDKIRRKNCPACRFRKCLQAGM 461
Query: 56 NRDVTR 61
N + +
Sbjct: 462 NLEARK 467
>sp|Q9XVV3|NHR67_CAEEL Nuclear hormone receptor family member nhr-67 OS=Caenorhabditis
elegans GN=nhr-67 PE=1 SV=1
Length = 416
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 20 RNLEYVCKERG-----HCIVDVTRRNQCQACRFSKCLQVKMNRDV 59
R+ +YVCK +G C VD T RNQC+ACR KCL++ MN+D
Sbjct: 51 RHRQYVCKNKGSPSEGQCKVDKTHRNQCRACRLRKCLEIGMNKDA 95
>sp|P22736|NR4A1_HUMAN Nuclear receptor subfamily 4 group A member 1 OS=Homo sapiens
GN=NR4A1 PE=1 SV=1
Length = 598
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>sp|Q0V8F0|NR4A1_BOVIN Nuclear receptor subfamily 4 group A member 1 OS=Bos taurus
GN=NR4A1 PE=2 SV=1
Length = 598
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>sp|P51666|NR4A1_CANFA Nuclear receptor subfamily 4 group A member 1 OS=Canis familiaris
GN=NR4A1 PE=2 SV=1
Length = 598
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTR 61
+N +Y+C C VD RRN+CQ CRF KCL V M ++V R
Sbjct: 297 KNAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVR 338
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL++ M R+ + G P+
Sbjct: 230 RNLTYSCRGSRNCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPT 278
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C VD RNQCQ CR KCL+V M R+ + G P+
Sbjct: 84 RNLSYTCRANRNCPVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPN 132
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 109 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 157
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 20 RNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68
RNL Y C+ +C +D RNQCQ CR KCL+V M R+ + G P+
Sbjct: 105 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPT 153
>sp|P31396|HR3_DROME Probable nuclear hormone receptor HR3 OS=Drosophila melanogaster
GN=Hr46 PE=2 SV=1
Length = 487
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 10 GVVSCQFV--FVRN-----LEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62
GV++C+ F R + Y C C+VD RN+CQ CR KCL++ M+RD +
Sbjct: 64 GVITCEGCKGFFRRSQSSVVNYQCPRNKQCVVDRVNRNRCQYCRLQKCLKLGMSRDAVKF 123
Query: 63 G 63
G
Sbjct: 124 G 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.139 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,336,203
Number of Sequences: 539616
Number of extensions: 1239166
Number of successful extensions: 3124
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2687
Number of HSP's gapped (non-prelim): 449
length of query: 119
length of database: 191,569,459
effective HSP length: 86
effective length of query: 33
effective length of database: 145,162,483
effective search space: 4790361939
effective search space used: 4790361939
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)