Query psy9232
Match_columns 119
No_of_seqs 121 out of 1178
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:16:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cbb_A HNF-4-alpha, hepatocyte 99.9 2.6E-26 8.9E-31 141.7 0.8 63 2-65 16-78 (78)
2 2ebl_A COUP transcription fact 99.9 4.1E-26 1.4E-30 144.0 0.6 65 2-67 23-87 (89)
3 1dsz_B RXR-alpha, retinoic aci 99.9 6.6E-26 2.3E-30 142.0 0.8 64 2-66 21-84 (85)
4 1ynw_B Retinoic acid receptor 99.9 1.2E-25 4.1E-30 144.4 0.8 67 2-69 19-85 (99)
5 1dsz_A RAR-alpha, retinoic aci 99.9 1.4E-25 4.9E-30 140.7 0.6 64 2-66 20-83 (86)
6 1hcq_A Protein (estrogen recep 99.9 1.4E-25 4.7E-30 140.3 0.1 63 2-65 20-82 (84)
7 2han_A Protein ultraspiracle; 99.9 1.7E-25 5.9E-30 142.2 0.2 64 2-66 26-89 (93)
8 1a6y_A Orphan nuclear receptor 99.9 2.2E-25 7.5E-30 142.0 -0.5 66 2-68 23-89 (94)
9 1cit_A NGFI-B, protein (orphan 99.9 3.3E-25 1.1E-29 139.9 -0.1 63 2-65 16-78 (89)
10 1lo1_A Steroid hormone recepto 99.9 3.5E-25 1.2E-29 142.0 -0.7 65 2-67 20-84 (98)
11 1kb2_A Vitamin D3 receptor; VD 99.9 3.4E-25 1.2E-29 144.7 -1.7 65 2-67 22-86 (110)
12 2a66_A Orphan nuclear receptor 99.9 1.4E-24 4.9E-29 142.3 0.5 65 2-67 25-89 (113)
13 4hn5_A Glucocorticoid receptor 99.9 1.2E-24 4.3E-29 143.3 0.1 65 2-67 45-109 (117)
14 3g9m_A Glucocorticoid receptor 99.9 6.5E-25 2.2E-29 138.9 -1.4 65 2-67 18-82 (90)
15 1r4i_A Androgen receptor; AR, 99.9 3.6E-24 1.2E-28 138.8 -0.3 63 2-65 23-85 (105)
16 2han_B Ecdysone receptor; tran 99.9 5.2E-24 1.8E-28 140.9 0.3 64 2-66 24-87 (119)
17 2nll_B Protein (thyroid hormon 99.9 5.6E-24 1.9E-28 137.5 -0.5 63 2-65 17-81 (103)
18 3dzy_A Retinoic acid receptor 99.8 2.5E-22 8.5E-27 158.8 3.6 98 2-103 153-250 (467)
19 3dzy_D Peroxisome proliferator 99.8 1E-19 3.5E-24 142.1 4.3 66 2-70 66-132 (419)
20 2lze_A A primordial catalytic 99.7 1E-18 3.6E-23 109.4 1.8 56 5-62 22-77 (87)
21 1lbd_A RXR_LBD, retinoid X rec 97.1 0.00019 6.5E-09 52.6 2.1 55 46-103 11-65 (282)
22 1gnf_A Transcription factor GA 42.6 3.1 0.00011 22.2 -0.9 14 2-16 24-37 (46)
23 2vut_I AREA, nitrogen regulato 40.7 2.5 8.6E-05 22.2 -1.5 14 2-16 21-34 (43)
24 3dfx_A Trans-acting T-cell-spe 35.8 5 0.00017 22.8 -0.8 14 2-16 27-40 (63)
25 2kae_A GATA-type transcription 30.6 6.6 0.00023 22.9 -0.9 11 4-15 31-41 (71)
26 2k9h_A Glycoprotein; hantaviru 25.5 24 0.00084 19.5 0.9 14 1-15 1-14 (57)
27 1x5v_A PCFK1; inhibitory cysti 20.2 6.6 0.00023 19.1 -1.9 22 30-51 7-30 (34)
No 1
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.6e-26 Score=141.75 Aligned_cols=63 Identities=29% Similarity=0.608 Sum_probs=59.6
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~ 65 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..++.|++|||+|||++||++++||.+|+
T Consensus 16 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 16 GASSCDGCKGF-FRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp TEECCHHHHHH-HHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCcchhhhcee-eeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 89999999999 9999999999999999999999999999999999999999999999998874
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.91 E-value=4.1e-26 Score=144.00 Aligned_cols=65 Identities=35% Similarity=0.720 Sum_probs=62.5
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|++.
T Consensus 23 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 87 (89)
T 2ebl_A 23 GQFTCEGCKSF-FKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSGPS 87 (89)
T ss_dssp TEECCHHHHHH-HHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCCCC
T ss_pred CchhhHHhhhh-hheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCCCC
Confidence 89999999999 999999999999999999999999999999999999999999999999998754
No 3
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.91 E-value=6.6e-26 Score=141.97 Aligned_cols=64 Identities=28% Similarity=0.704 Sum_probs=61.6
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWY 66 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~ 66 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|+.
T Consensus 21 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 84 (85)
T 1dsz_B 21 GVYSCEGCKGF-FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 84 (85)
T ss_dssp TEECCHHHHHH-HHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCCC
T ss_pred CccchHHHHHH-HHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccCC
Confidence 89999999999 99999999999999999999999999999999999999999999999998863
No 4
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.90 E-value=1.2e-25 Score=144.38 Aligned_cols=67 Identities=27% Similarity=0.643 Sum_probs=58.0
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCCcc
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSF 69 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~~~ 69 (119)
||++|+||++| |||+|+.+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|+....
T Consensus 19 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~~ 85 (99)
T 1ynw_B 19 GVYSCEGCKGF-FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKD 85 (99)
T ss_dssp TSCBCSHHHHH-HHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC--------
T ss_pred CccchHHHHHH-HHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccccccc
Confidence 89999999999 99999999999999999999999999999999999999999999999999886543
No 5
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.90 E-value=1.4e-25 Score=140.75 Aligned_cols=64 Identities=28% Similarity=0.638 Sum_probs=59.7
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWY 66 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~ 66 (119)
||++|+||++| |||+|..+..|.|..+++|.|+...++.|++|||+|||++||++++||.+|+.
T Consensus 20 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 83 (86)
T 1dsz_A 20 GVSACEGCKGF-FRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 83 (86)
T ss_dssp TEECCHHHHHH-HHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC---
T ss_pred CchhHHHHHHH-HHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccc
Confidence 89999999999 99999999999999999999999999999999999999999999999999874
No 6
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.90 E-value=1.4e-25 Score=140.25 Aligned_cols=63 Identities=29% Similarity=0.634 Sum_probs=54.0
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~ 65 (119)
||++|+||++| |||+|+.+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|.
T Consensus 20 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 20 GVWSCEGCKAF-FKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp TEEECHHHHHH-HHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred CccchHHhhhh-hhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 89999999999 9999999999999999999999999999999999999999999999998874
No 7
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.90 E-value=1.7e-25 Score=142.23 Aligned_cols=64 Identities=31% Similarity=0.701 Sum_probs=60.5
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWY 66 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~ 66 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|+.
T Consensus 26 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 89 (93)
T 2han_A 26 GVYSCEGCKGF-FKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQG 89 (93)
T ss_dssp TEEECHHHHHH-HHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC--
T ss_pred CcchhHHHHHH-HHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccCc
Confidence 89999999999 99999999999999999999999999999999999999999999999998874
No 8
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.89 E-value=2.2e-25 Score=141.99 Aligned_cols=66 Identities=35% Similarity=0.711 Sum_probs=60.1
Q ss_pred CCCCChhccCccceeeeecCCee-eeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCCc
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEY-VCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPS 68 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~-~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~~ 68 (119)
||++|+||++| |||+|..+..| .|..+++|.|++..+..|++|||+|||++||++++||.+|++..
T Consensus 23 Gv~sC~aCk~F-FRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~~ 89 (94)
T 1a6y_A 23 GVLACEGCKGF-FRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKR 89 (94)
T ss_dssp TEEECHHHHHH-HHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC----
T ss_pred Cccchhhhhhe-hheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcCcCc
Confidence 89999999999 99999999889 69999999999999999999999999999999999999987543
No 9
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.89 E-value=3.3e-25 Score=139.85 Aligned_cols=63 Identities=35% Similarity=0.704 Sum_probs=60.4
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~ 65 (119)
||++|+||++| |||+|..+..|.|..+++|.|++..++.|++|||+|||++||++++||.++.
T Consensus 16 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~ 78 (89)
T 1cit_A 16 GVRTCEGCKGF-FKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSL 78 (89)
T ss_dssp TEEECHHHHHH-HHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGG
T ss_pred Cccchhhhhhh-ceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccc
Confidence 89999999999 9999999999999999999999999999999999999999999999998754
No 10
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.89 E-value=3.5e-25 Score=141.99 Aligned_cols=65 Identities=32% Similarity=0.611 Sum_probs=62.0
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++||.+|+..
T Consensus 20 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~~ 84 (98)
T 1lo1_A 20 GVASCEACKAF-FKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRVRG 84 (98)
T ss_dssp SSEECHHHHHH-HHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCCTT
T ss_pred Cccchhhhhhh-heeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeecccccC
Confidence 89999999999 999999999999999999999999999999999999999999999999988643
No 11
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.89 E-value=3.4e-25 Score=144.74 Aligned_cols=65 Identities=23% Similarity=0.541 Sum_probs=61.6
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++|+.+|.+.
T Consensus 22 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~~q 86 (110)
T 1kb2_A 22 NAMTCEGCKGF-FRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQ 86 (110)
T ss_dssp TEECCHHHHHH-HHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHHHH
T ss_pred CchhHhhhhhh-heeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHHHh
Confidence 89999999999 999999999999999999999999999999999999999999999999877643
No 12
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.88 E-value=1.4e-24 Score=142.28 Aligned_cols=65 Identities=32% Similarity=0.636 Sum_probs=62.1
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|+.+++|.|+...+..|++|||+|||++||++++||.+|+..
T Consensus 25 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~~~ 89 (113)
T 2a66_A 25 GLLTCESCKGF-FKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 89 (113)
T ss_dssp TEEEEHHHHHH-HHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCCCS
T ss_pred CcccHHHHHHH-HhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccccC
Confidence 89999999999 999999999999999999999999999999999999999999999999988643
No 13
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.88 E-value=1.2e-24 Score=143.28 Aligned_cols=65 Identities=34% Similarity=0.701 Sum_probs=55.9
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|..+++|.+++..+..|++|||+|||++||++++||.+|.+.
T Consensus 45 Gv~sC~aCk~F-FRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~~k 109 (117)
T 4hn5_A 45 GVLTCGSCKVF-FKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 109 (117)
T ss_dssp TEEECHHHHHH-HHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC--------
T ss_pred CCcccchhhhh-hhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhccccccc
Confidence 89999999999 999999999999999999999999999999999999999999999999887643
No 14
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.88 E-value=6.5e-25 Score=138.92 Aligned_cols=65 Identities=34% Similarity=0.701 Sum_probs=60.3
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYP 67 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~ 67 (119)
||++|+||++| |||+|..+..|.|..+++|.++...+..|++|||+|||++||++++||.+|.+.
T Consensus 18 Gv~sC~~Ck~F-FRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~ 82 (90)
T 3g9m_A 18 GVLTCGSCKVF-FKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 82 (90)
T ss_dssp TEEECHHHHHH-HHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC---
T ss_pred CCccchhHhHH-hhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccc
Confidence 89999999999 999999999999999999999999999999999999999999999999887543
No 15
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.87 E-value=3.6e-24 Score=138.76 Aligned_cols=63 Identities=30% Similarity=0.667 Sum_probs=55.8
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~ 65 (119)
||++|+||++| |||+|..+..|.|+.+++|.|++..+..|++|||+|||++||++++++..+.
T Consensus 23 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~ 85 (105)
T 1r4i_A 23 GALTCGSCKVF-FKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKL 85 (105)
T ss_dssp TEEEEHHHHHH-HHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC------
T ss_pred CCcchhhhhhh-hceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhccc
Confidence 89999999999 9999999999999999999999999999999999999999999999988765
No 16
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.87 E-value=5.2e-24 Score=140.90 Aligned_cols=64 Identities=30% Similarity=0.549 Sum_probs=61.2
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWY 66 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~ 66 (119)
||++|+||++| |||+|..+..|.|+.+++|.|+...++.|++|||+|||++||++++|+.++..
T Consensus 24 Gv~sC~aCk~F-FRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~~ 87 (119)
T 2han_B 24 NALTCEGCKGF-FRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQC 87 (119)
T ss_dssp TEEECHHHHHH-HHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSHH
T ss_pred CchhHHhhHHh-hhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhhh
Confidence 89999999999 99999999999999999999999999999999999999999999999987753
No 17
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.87 E-value=5.6e-24 Score=137.54 Aligned_cols=63 Identities=37% Similarity=0.742 Sum_probs=59.7
Q ss_pred CCCCChhccCccceeeeecCC--eeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNL--EYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFW 65 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~--~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~ 65 (119)
||++|+||++| |||+|..+. .|.|..+++|.|+...+..|++|||+|||++||++++|+.++.
T Consensus 17 Gv~sC~aCk~F-FRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~ 81 (103)
T 2nll_B 17 RCITCEGCKGF-FRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 81 (103)
T ss_dssp TEECCHHHHHH-HHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CcccHHHhhhh-heecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhh
Confidence 89999999999 999999875 7999999999999999999999999999999999999998765
No 18
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.85 E-value=2.5e-22 Score=158.76 Aligned_cols=98 Identities=23% Similarity=0.422 Sum_probs=74.6
Q ss_pred CCCCChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCCccchhhcccccccC
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFG 81 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~~~~~~~~~~~~~~~ 81 (119)
||++|+|||+| |||+|+++..|.|+.+++|.+++..|+.|++|||+||+++||++++||.+|.......... ....
T Consensus 153 gv~sC~~Ck~F-FrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~~k~r~~~~---~~~~ 228 (467)
T 3dzy_A 153 GVYSCEGCKGF-FKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENE---VEST 228 (467)
T ss_dssp TEECCHHHHHH-HHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCCCCCCSCSS---CTTS
T ss_pred CCcchhhhhHh-ccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccccccccccccc---cccc
Confidence 89999999999 9999999999999999999999999999999999999999999999999887543221100 0011
Q ss_pred CCCCCccchHHHHHHHHHhhcC
Q psy9232 82 QESPAWMCFVRCVEIRLQVNTM 103 (119)
Q Consensus 82 ~~~~~~~~~~~i~~~~l~le~~ 103 (119)
......++++.+++..+.++..
T Consensus 229 ~~~~~~~~~~~ll~a~~~~e~~ 250 (467)
T 3dzy_A 229 SSANEDMPVERILEAELAVEPK 250 (467)
T ss_dssp TTCSCSSCHHHHHHHHHC----
T ss_pred cccCCCCchhhhhhhhhhhccc
Confidence 2233455677777766554443
No 19
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.77 E-value=1e-19 Score=142.08 Aligned_cols=66 Identities=30% Similarity=0.563 Sum_probs=60.1
Q ss_pred CCCCChhccCccceeeeecCCeee-eCCCCcccccccccccCcchhHHHHHHhcccccceecCCCCCccc
Q psy9232 2 AALDCPDCGVVSCQFVFVRNLEYV-CKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLGFWYPSFL 70 (119)
Q Consensus 2 g~~sC~~C~~F~frR~i~~~~~~~-C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~~r~~~~~~ 70 (119)
||++|+|||+| |||+|+.+..|. | .++|.+++..|+.|++|||+||+++||++++||.+|.+....
T Consensus 66 gv~~C~~C~~F-FrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~~~~~k 132 (419)
T 3dzy_D 66 GVHACEGCKGF-FRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEK 132 (419)
T ss_dssp SSBCCHHHHHH-HHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCCTTTTG
T ss_pred CcccchhhhHH-Hccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchhheeccccccccc
Confidence 89999999999 999999998884 6 468999999999999999999999999999999999865443
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.72 E-value=1e-18 Score=109.39 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=50.6
Q ss_pred CChhccCccceeeeecCCeeeeCCCCcccccccccccCcchhHHHHHHhcccccceec
Q psy9232 5 DCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRL 62 (119)
Q Consensus 5 sC~~C~~F~frR~i~~~~~~~C~~~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~v~~ 62 (119)
.|.+|++| |||+ +.+..|.|+.+++|.|++..|+.|++|||+|||+|||....+..
T Consensus 22 vCgd~asf-FRRt-~~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~ 77 (87)
T 2lze_A 22 ICGNNAED-YKHT-DMDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGS 77 (87)
T ss_dssp SSSSSSSS-CTTT-TTSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCC
T ss_pred CCCCccce-ECcc-cCCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCcc
Confidence 38999999 9998 56788999999999999999999999999999999999776554
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=97.09 E-value=0.00019 Score=52.60 Aligned_cols=55 Identities=11% Similarity=-0.124 Sum_probs=13.3
Q ss_pred hHHHHHHhcccccceecCCCCCccchhhcccccccCCCCCCccchHHHHHHHHHhhcC
Q psy9232 46 RFSKCLQVKMNRDVTRLGFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVEIRLQVNTM 103 (119)
Q Consensus 46 R~~kCl~~GM~~~~v~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~le~~ 103 (119)
--.||+++||+++|||.+|...+........ .......+++++.+++..+.+|+.
T Consensus 11 ~~~kCl~vGMkkeaVq~~R~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~e~~ 65 (282)
T 1lbd_A 11 SSGLVPRGSHKREAVQEERQRGKDRNENEVE---STSSANEDMPVERILEAELAVEPK 65 (282)
T ss_dssp -------------------------------------CCTTTSCHHHHHHHHHTTCCC
T ss_pred CCCCcCccCCcHHhhcCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHhcCCc
Confidence 4469999999999999999765433211110 112223456688888877766654
No 22
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=42.63 E-value=3.1 Score=22.18 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.1
Q ss_pred CCCCChhccCcccee
Q psy9232 2 AALDCPDCGVVSCQF 16 (119)
Q Consensus 2 g~~sC~~C~~F~frR 16 (119)
|...|++|+.+ ++.
T Consensus 24 G~~LCNaCGl~-~k~ 37 (46)
T 1gnf_A 24 GHYLCNACGLY-HKM 37 (46)
T ss_dssp CCCBCSHHHHH-HHH
T ss_pred CCccchHHHHH-HHH
Confidence 56789999998 664
No 23
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=40.68 E-value=2.5 Score=22.22 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=10.7
Q ss_pred CCCCChhccCcccee
Q psy9232 2 AALDCPDCGVVSCQF 16 (119)
Q Consensus 2 g~~sC~~C~~F~frR 16 (119)
|...|++|+.+ +|.
T Consensus 21 G~~LCNaCGl~-~k~ 34 (43)
T 2vut_I 21 GQPLCNACGLF-LKL 34 (43)
T ss_dssp SCEECHHHHHH-HHH
T ss_pred CCcccHHHHHH-HHH
Confidence 55679999988 663
No 24
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=35.80 E-value=5 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.645 Sum_probs=10.6
Q ss_pred CCCCChhccCcccee
Q psy9232 2 AALDCPDCGVVSCQF 16 (119)
Q Consensus 2 g~~sC~~C~~F~frR 16 (119)
|...|++|+.+ ++.
T Consensus 27 G~~LCNACGl~-~~~ 40 (63)
T 3dfx_A 27 GDPVCNACGLY-YKL 40 (63)
T ss_dssp SCCCCHHHHHH-HHH
T ss_pred CCchhhHHHHH-HHH
Confidence 56788999888 653
No 25
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=30.60 E-value=6.6 Score=22.89 Aligned_cols=11 Identities=18% Similarity=0.649 Sum_probs=8.3
Q ss_pred CCChhccCccce
Q psy9232 4 LDCPDCGVVSCQ 15 (119)
Q Consensus 4 ~sC~~C~~F~fr 15 (119)
..|+||+.+ ++
T Consensus 31 ~LCNACGl~-~~ 41 (71)
T 2kae_A 31 IQCNACFIY-QR 41 (71)
T ss_dssp CCSSHHHHH-HH
T ss_pred ccchHHHHH-HH
Confidence 578888887 65
No 26
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=25.52 E-value=24 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=11.2
Q ss_pred CCCCCChhccCccce
Q psy9232 1 MAALDCPDCGVVSCQ 15 (119)
Q Consensus 1 ~g~~sC~~C~~F~fr 15 (119)
||...|+.|+-- +-
T Consensus 1 ~GsmvC~~C~~E-CE 14 (57)
T 2k9h_A 1 MGSMVCDVCHHE-CE 14 (57)
T ss_dssp CCTTBCTTTCCB-CS
T ss_pred CCcchhhHHHhh-hh
Confidence 788899999887 53
No 27
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=20.23 E-value=6.6 Score=19.08 Aligned_cols=22 Identities=32% Similarity=0.955 Sum_probs=11.9
Q ss_pred CcccccccccccCcc--hhHHHHH
Q psy9232 30 GHCIVDVTRRNQCQA--CRFSKCL 51 (119)
Q Consensus 30 ~~C~~~~~~r~~C~~--CR~~kCl 51 (119)
.+|.....++.-|+. ||+-+||
T Consensus 7 d~c~~~p~~~~cc~glqcryg~cl 30 (34)
T 1x5v_A 7 DNCVYVPAQNPCCRGLQCRYGKCL 30 (34)
T ss_dssp CEECSCGGGCCBCTTEEEETEEEE
T ss_pred CCCCCCCCCCccceeeeeccCcEE
Confidence 455554445544443 6776664
Done!