RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9232
(119 letters)
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 45.0 bits (106), Expect = 4e-08
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 12 VSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
+ ++ Y CK C +D+ R +CQ CR KCL V M +
Sbjct: 25 GFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPE 71
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 44.6 bits (105), Expect = 6e-08
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 15 QFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
+ R + C G C + R CQACR +C+ + M ++
Sbjct: 28 RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKE 71
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 43.5 bits (102), Expect = 1e-07
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 3 ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
AL C C V + +Y+C R C +D RR C +CR KC + M
Sbjct: 19 ALTCGSCKVFF-KRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLG 73
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.8 bits (103), Expect = 1e-07
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 3 ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C C + N+EY C C + RR CQACRF K L+V M ++
Sbjct: 21 VASCEACKAFF-KRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKE 75
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 42.6 bits (100), Expect = 4e-07
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 19 VRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
++L Y C++ C++D +RN+CQ CR+ KCL + M R+
Sbjct: 37 RKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE 76
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 42.4 bits (99), Expect = 4e-07
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 6 CPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C C + Y+CK G CI+D RR C ACR+ KCLQ MN +
Sbjct: 20 CEGC-KAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRYRKCLQAGMNLE 71
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 41.6 bits (97), Expect = 1e-06
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 10 GVVSC-------QFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
GV +C + ++ +Y+C C VD RRN+CQ CRF KCL V M ++
Sbjct: 16 GVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKE 71
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 40.7 bits (95), Expect = 2e-06
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 6 CPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRDVTRLG 63
C C + + C + +C + RN+CQ CRF KCL V M+RD R G
Sbjct: 20 CEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFG 77
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 39.7 bits (92), Expect = 4e-06
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 3 ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNR 57
C C + + +Y+C C +D RR CQACR KC +V M +
Sbjct: 21 VWSCEGCKAFF-KRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.2 bits (93), Expect = 5e-06
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 3 ALDCPDCGVVSCQFVFVRNLEYVCKER--GHCIVDVTRRNQCQACRFSKCLQVKMNRDVT 60
+ C C + +NL + G C++D RNQCQ CRF KC+ V M D+
Sbjct: 18 CITCEGC-KGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLV 76
Query: 61 R 61
Sbjct: 77 L 77
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 38.9 bits (90), Expect = 7e-06
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 ALDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFSKCLQVKMNRD 58
C C + +N+ Y C +CI++ RN+CQ CR KC +V M+++
Sbjct: 16 VSACEGCKGFF-RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKE 70
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of
SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 124
Score = 23.8 bits (51), Expect = 4.5
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 4 LDCPDCGVVSCQFVFVRNLEYVCKERGHCIVDVTRRNQCQACRFS----KCLQVKMNRDV 59
+ + + + +F R+ +Y+ ++ IVD R++ + ++ K + ++
Sbjct: 63 VSYLNNALKAK-ELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEI 121
Query: 60 TR 61
Sbjct: 122 KA 123
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 24.4 bits (53), Expect = 4.6
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 63 GFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVE 95
F +P F+ + F G+ W+ E
Sbjct: 328 AFSFPGFVPAYIRPLFCEGKGPFRWVALSGDPE 360
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 24.0 bits (52), Expect = 6.8
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 63 GFWYPSFLLRVVSSRFLFGQESPAWMCFVRCVE 95
F +P F+ + F G W E
Sbjct: 336 AFDFPGFVPAYIRPLFCRGVGPFRWAALSGEAE 368
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.332 0.139 0.466
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,239
Number of extensions: 19061
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 16
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.4 bits)