BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9235
         (317 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
          Length = 358

 Score = 32.0 bits (71), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 56  VYYTCILCQEEQALTKQNDALVLAAFVQQST----VMFRNRNADRTDFKVNSLYISLEHQ 111
           VY T +L  +E A  K    ++   F    T     M R+ N       V  L +SL  +
Sbjct: 40  VYETVVLPLDETAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALE 99

Query: 112 GPAPH--------TSTCGHVMHSTCWSKYFDNIL 137
           G A H        +  CG VM +    K FD +L
Sbjct: 100 GKASHREMTSKLLSDLCGTVMSTNDVEKSFDKLL 133


>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
 pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
          Length = 321

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 12/96 (12%)

Query: 54  GPVYYTCILCQEEQALTKQNDALVLAAFVQQST----VMFRNRNADRTDFKVNSLYISLE 109
           GP+     L  +E+A  K    ++   F    T     M R+ N       V  L +SL 
Sbjct: 1   GPLGSPEFLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLA 60

Query: 110 HQGPAPH--------TSTCGHVMHSTCWSKYFDNIL 137
            +G A H        +  CG VM +T   K FD +L
Sbjct: 61  LEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLL 96


>pdb|3P8C|B Chain B, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 1128

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 130 SKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLIPALSSIQTTTPTE 189
           ++ F+N+L ++ +      +PT   +  N +L  L   +SN  +   PA+ +     PTE
Sbjct: 762 TRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVSNGHIAYFPAMKAF-VNLPTE 820

Query: 190 NAEVF 194
           N   F
Sbjct: 821 NELTF 825


>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
          Length = 1325

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 210  LEHKKRLKKSKATSECQDSTSSKQVPQDRKPLEIN 244
            L++KK  K  K  SE  D  +   +P+D K LEIN
Sbjct: 1116 LKYKKSAKYFKINSEQIDVENFVDIPEDTKKLEIN 1150


>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
          Length = 1325

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 210  LEHKKRLKKSKATSECQDSTSSKQVPQDRKPLEIN 244
            L++KK  K  K  SE  D  +   +P+D K LEIN
Sbjct: 1116 LKYKKSAKYFKINSEQIDVENFVDIPEDTKKLEIN 1150


>pdb|1PC9|A Chain A, Crystal Structure Of Bnsp-6, A Lys49-Phospholipase A2
 pdb|1PC9|B Chain B, Crystal Structure Of Bnsp-6, A Lys49-Phospholipase A2
          Length = 121

 Score = 28.1 bits (61), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 108 LEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167
           L   GP   T  C +V H  C+ K       K++R  Y  +  T    E N  L  LCEC
Sbjct: 31  LGRGGPKDATDRCCYV-HKCCYKK-LTGCDPKKDRYSYSWKDKTIVCGENNPCLKELCEC 88

Query: 168 LSNAALPLIPALSS 181
               A+ L   L +
Sbjct: 89  DKAVAICLRENLGT 102


>pdb|3MLM|A Chain A, Crystal Structure Of Bn Iv In Complex With Myristic Acid:
           A Lys49 Myotoxic Phospholipase A2 From Bothrops Neuwiedi
           Venom
 pdb|3MLM|B Chain B, Crystal Structure Of Bn Iv In Complex With Myristic Acid:
           A Lys49 Myotoxic Phospholipase A2 From Bothrops Neuwiedi
           Venom
          Length = 121

 Score = 27.7 bits (60), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 108 LEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167
           L   GP   T  C +V H  C+ K       K++R  Y  +  T    E N  L  LCEC
Sbjct: 31  LGRGGPKDATDRCCYV-HKCCYKK-ITGCDPKKDRYSYSWKDKTIVCGENNPCLKELCEC 88

Query: 168 LSNAALPLIPALSS 181
               A+ L   L +
Sbjct: 89  DKAVAICLRENLGT 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,836,174
Number of Sequences: 62578
Number of extensions: 331625
Number of successful extensions: 714
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 10
length of query: 317
length of database: 14,973,337
effective HSP length: 99
effective length of query: 218
effective length of database: 8,778,115
effective search space: 1913629070
effective search space used: 1913629070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)