BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9235
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1
Length = 1755
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 157/297 (52%), Gaps = 31/297 (10%)
Query: 1 MQAQQNSFMKENAQLFEAN-----ATIKLEEEEPESSCMDVVEHPVALGPNQTPRPNTGP 55
M Q F+ EN +LF+ +T + + P +S M + ALGP QT P
Sbjct: 1049 MSEMQRHFIDENKELFQQTLELDASTSAVLDHSPVASDMTLT----ALGPAQTQVPEQRQ 1104
Query: 56 VYYTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTD-FKVNSLYISLEHQGPA 114
+ TCILCQEEQ + ++ A+VLAAFVQ+STV+ +NR+ D K + L++ +
Sbjct: 1105 -FVTCILCQEEQEVKVESRAMVLAAFVQRSTVLSKNRSKFIQDPEKYDPLFMHPD-LSCG 1162
Query: 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALP 174
HTS+CGH+MH+ CW +YFD++ AKE RR RLR TS+D+E EFLCPLCECLSN +P
Sbjct: 1163 THTSSCGHIMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNTVIP 1222
Query: 175 LIPALSSIQTTTPTENAEVFVHMDFDAWLSIVEMVLEHKKRLKKSKATSECQDSTSSK-- 232
L+ +I + + + W+ + ++ + L+K ++T + +S+
Sbjct: 1223 LLLPPRNIFNNRLNFSDQP----NLTQWIRTISQQIKALQFLRKEESTPNNASTKNSENV 1278
Query: 233 ---QVPQDRKPLEINRLINLPDDYSELINT-------VSLFTCPNSDREDSRNPALC 279
Q+P+ +P + I + E++ T V L PN ED R P +C
Sbjct: 1279 DELQLPEGFRP-DFRPKIPYSESIKEMLTTFGTATYKVGLKVHPNE--EDPRVPIMC 1332
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 46/60 (76%)
Query: 238 RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTEL 297
R P E N+LINLP+DYS LIN S F+CP S + SR P LCL+CG +LCSQSYCCQTEL
Sbjct: 1592 RYPRESNKLINLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQTEL 1651
>sp|Q6WKZ8|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2
Length = 1755
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 110/185 (59%), Gaps = 18/185 (9%)
Query: 1 MQAQQNSFMKENAQLFE------ANATIKLEEEEPESSCMDVVEHPVALGPNQT--PRPN 52
M Q F+ EN +LF+ +A+ L+ P S ALGP QT P P
Sbjct: 1049 MSEMQRHFIDENKELFQQTLELDTSASATLDSSPPVSDAA-----LTALGPAQTQVPEPR 1103
Query: 53 TGPVYYTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTD-FKVNSLYISLEHQ 111
+ TCILCQEEQ +T + A+VLAAFVQ+STV+ ++R D K + L++ +
Sbjct: 1104 Q---FVTCILCQEEQEVTVGSRAMVLAAFVQRSTVLSKDRTKTIADPEKYDPLFMHPD-L 1159
Query: 112 GPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNA 171
HT +CGHVMH+ CW +YFD++ AKE RR RLR TS+D+E EFLCPLCECLSN
Sbjct: 1160 SCGTHTGSCGHVMHAHCWQRYFDSVQAKEQRRQQRLRLHTSYDVENGEFLCPLCECLSNT 1219
Query: 172 ALPLI 176
+PL+
Sbjct: 1220 VIPLL 1224
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 223 SECQDSTSSKQVPQDRK----PLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPAL 278
S CQ+S + + +R P N+LI+LP+DYS LIN S F+CP S + SR P L
Sbjct: 1573 SWCQNSEVKRYLNGERGAISYPRGANKLIDLPEDYSSLINQASNFSCPKSGGDKSRAPTL 1632
Query: 279 CLICGDMLCSQSYCCQTEL 297
CL+CG +LCSQSYCCQ EL
Sbjct: 1633 CLVCGSLLCSQSYCCQAEL 1651
>sp|O70481|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2
Length = 1757
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 19/214 (8%)
Query: 1 MQAQQNSFMKENAQLFEANATIKLEEE---EPESSCMDVVEHPVALGPNQTPRPNTGPVY 57
M A Q +F++ + +++ + + +E+ E ES+ +ALGP + P V
Sbjct: 1040 MSALQKNFIETHKLMYDNTSEVTGKEDSIMEEESTSAVSEASRIALGPKRGPAVTEKEVL 1099
Query: 58 YTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRN--ADRTDFKVNSLYI--SLEHQGP 113
TCILCQEEQ + +N+A+VL+A VQ+ST + ++R D ++ L++ L H
Sbjct: 1100 -TCILCQEEQEVKLENNAMVLSACVQKSTALTQHRGKPVDHLGETLDPLFMDPDLAH--- 1155
Query: 114 APHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAAL 173
+T +CGHVMH+ CW KYF+ + +R + FD+E E+LCPLC+ L N +
Sbjct: 1156 GTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIH----VDLFDLESGEYLCPLCKSLCNTVI 1211
Query: 174 PLIPALSSIQTTTPTENAEVFVH-MDFDAWLSIV 206
P+IP +ENAE + W+ V
Sbjct: 1212 PIIPLQPQ---KINSENAEALAQLLTLARWIQTV 1242
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 225 CQDSTSSKQVPQD----RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCL 280
C D K + Q R P + N LI LP+DYS L+N S F CP S ++ ++P LCL
Sbjct: 1577 CGDPALLKSLKQKSAVVRYPRKRNSLIELPEDYSCLLNQASHFRCPRSADDERKHPVLCL 1636
Query: 281 ICGDMLCSQSYCCQ 294
CG +LCSQ+ CCQ
Sbjct: 1637 FCGAILCSQNICCQ 1650
>sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1
Length = 1749
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 103/182 (56%), Gaps = 11/182 (6%)
Query: 1 MQAQQNSFMKENAQLFEANATIKLEEE---EPESSCMDVVEHPVALGPNQTPRPNTGPVY 57
M A Q +F++ + +++ + + +E+ E ES+ +ALGP + P V
Sbjct: 1037 MSALQKNFIETHKLMYDNTSEMPGKEDSIMEEESTPAVSDYSRIALGPKRGPSVTEKEVL 1096
Query: 58 YTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNA--DRTDFKVNSLYISLEHQGPAP 115
TCILCQEEQ + +N+A+VL+A VQ+ST + ++R + + ++ L++ +
Sbjct: 1097 -TCILCQEEQEVKIENNAMVLSACVQKSTALTQHRGKPIELSGEALDPLFMDPD-LAYGT 1154
Query: 116 HTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175
+T +CGHVMH+ CW KYF+ + +R + FD+E E+LCPLC+ L N +P+
Sbjct: 1155 YTGSCGHVMHAVCWQKYFEAVQLSSQQRIH----VDLFDLESGEYLCPLCKSLCNTVIPI 1210
Query: 176 IP 177
IP
Sbjct: 1211 IP 1212
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 238 RKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQ 294
R P + N LI LPDDYS L+N S F CP S ++ ++P LCL CG +LCSQ+ CCQ
Sbjct: 1586 RYPRKRNSLIELPDDYSCLLNQASHFRCPRSADDERKHPVLCLFCGAILCSQNICCQ 1642
>sp|Q9VX91|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1
PE=2 SV=2
Length = 1824
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 94/197 (47%), Gaps = 32/197 (16%)
Query: 1 MQAQQNSFMKENAQLF---------EANATIKLEEE----EPESSCMDVVEHPVALGPNQ 47
MQ Q SF+ NA++F E+ +T ++ E E E + + LGP++
Sbjct: 1057 MQKAQKSFISSNAEMFADTENETRKESASTGPMDWEDIPPEEEQGAVALESKVACLGPDR 1116
Query: 48 TPRPNTGPVYYTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKVNSLYIS 107
T + CILC E A+++ LV +AFVQ S V+F N
Sbjct: 1117 KFYHGTDDTF-KCILCFENCAISRGGRQLVSSAFVQTSRVIFTTPN-------------- 1161
Query: 108 LEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167
L + A H S CGHVMH +CW +YF N KE RRP+R R + EF CP C
Sbjct: 1162 LRNSQSALHISCCGHVMHYSCWLEYFTNEEFKELRRPHRNRAALA-QAANVEFQCPYCRT 1220
Query: 168 LSNAALPL---IPALSS 181
LSNA +P+ +PA S+
Sbjct: 1221 LSNAIIPVTETLPAFSA 1237
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 225 CQ-DSTSSKQVPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICG 283
CQ D+ S QV +PL RL L DD+S+LIN+VS CPN++RE+ + P +CLICG
Sbjct: 1650 CQPDARRSLQVEPCLRPLP--RLKVLCDDFSDLINSVSDIFCPNNEREEMKTPTMCLICG 1707
Query: 284 DMLCSQSYCCQTEL 297
+LC QSYCCQ EL
Sbjct: 1708 LILCGQSYCCQPEL 1721
>sp|P91133|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1
PE=1 SV=2
Length = 2058
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 21/224 (9%)
Query: 40 PVALGPNQTPRPNTGPVYYTCILCQEEQALT-KQNDALVLAAFVQQSTVMFRNRNADRTD 98
PV +G N+ P TCILCQE++ + +Q +V AAF+QQS +F ++N +
Sbjct: 1199 PVCIGANKWHAELVKPRTLTCILCQEDEIIAPQQGKPMVCAAFIQQSQ-LFTHKNKNGEL 1257
Query: 99 FKVNSLYISLEHQGPAPHT-------STCGHVMHSTCWSKYFDNILAKENRRPYRLRQPT 151
+S IS AP T STC H MH C+ + ++E+ R ++ Q +
Sbjct: 1258 MTASSGTISTRDLLTAPATLQYGVDVSTCSHSMHYECYRSLAEANRSRESLRARQVGQHS 1317
Query: 152 S--FDIEKNEFLCPLCECLSNAALPLIPA--LSSIQTTTPTENAEVFVHMDFDAWLSIVE 207
D E E+ CPLC+ LSNAA+P++PA L++ + A +FD W++ V+
Sbjct: 1318 HKMVDTENGEYQCPLCKRLSNAAIPVLPAYQLTNQNGFSTVSGAG---KENFDTWVARVK 1374
Query: 208 MVLEHKKRLKKSKATSECQDSTSSKQVPQDRKPLEINRLINLPD 251
LE + S + S K+ +R L++ +L PD
Sbjct: 1375 RNLE-----MPLSSESVSKKGHSRKRSHSERSLLDLEKLSKDPD 1413
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 208 MVLEHKKRLKKSKATSECQDSTSSKQVPQDR--------KPLEINRLINLPDDYSELINT 259
+ L HK + S + E + S +P D+ +P+ N L+ LP+ YS+LIN
Sbjct: 1855 LGLPHKIEEQISGSMLEKLFTMWSSSIPSDQALRQDLVVQPVRPNLLVELPEKYSQLINQ 1914
Query: 260 VSLFTCPNSDREDSRN--PALCLICGDMLCSQSYCCQ 294
V+ F CP E+S + P LCL+CG +LCSQ+YCCQ
Sbjct: 1915 VATFKCPTIPIEESTSNVPTLCLVCGTILCSQAYCCQ 1951
>sp|O60152|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ubr1 PE=3 SV=1
Length = 1958
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 86/229 (37%), Gaps = 73/229 (31%)
Query: 1 MQAQQNSFMKENAQLFEANATIKLEEEEPESSCMDVVEHPVALGPNQTPRPNTGPVYYTC 60
+ QQN F+ EN LFEA+ +E E S V + L P P+ TC
Sbjct: 1136 FRMQQNKFL-ENHALFEASDCEM--DEADEFSVTSSVSTKLFLDP---------PID-TC 1182
Query: 61 ILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKVNSLYI--SLEHQ------- 111
+LCQEE + LV FV +S+V+ R AD ++ L I SL+H+
Sbjct: 1183 LLCQEELKDKRPYGTLV---FVLRSSVL-RLFPADDANYVSEVLDIPDSLDHEIQERPFG 1238
Query: 112 -------------------------------------GPAP-------HTSTCGHVMHST 127
G P H + CGH MH
Sbjct: 1239 LAGKRKKVLDSTEAYDYDNYYYEKKGNELHQLKDSFNGFPPDQLDRGLHATGCGHFMHID 1298
Query: 128 CWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLI 176
C+ + + PYR P + ++ EFLCPLC+ L N P++
Sbjct: 1299 CFKNHIATVTLATRANPYR-NHPHNLSMK--EFLCPLCKALCNTIFPIL 1344
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 276 PALCLICGDMLCSQSYCC 293
PA+CL CG +LC QS+CC
Sbjct: 1839 PAICLFCGKLLCFQSHCC 1856
>sp|Q5U430|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3
Length = 1889
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 104 LYISLEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCP 163
L +S+ +G + TCGH +H C Y +++ R ++ Q F ++K EF CP
Sbjct: 1311 LAVSIGWEG-GVYVQTCGHTLHIDCHKSYMESL------RNDQVLQ--GFSVDKGEFTCP 1361
Query: 164 LCECLSNAALPLIPA 178
LC +N+ LP P
Sbjct: 1362 LCRQFANSVLPCYPG 1376
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 246 LINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELF 298
L+ LP++Y+ + TC + ++PA+CL+CG +C + CC+ + +
Sbjct: 1748 LLQLPENYNTIFQYYHRKTCSVCTKV-PKDPAVCLVCGTFVCLKGLCCKQQSY 1799
>sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2
Length = 1888
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 104 LYISLEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCP 163
L +S+ +G + TCGH +H C Y +++ R ++ Q F ++K EF CP
Sbjct: 1311 LAVSIGWEG-GVYVQTCGHTLHIDCHKSYMESL------RNDQVLQ--GFSVDKGEFTCP 1361
Query: 164 LCECLSNAALPLIPA 178
LC +N+ LP P
Sbjct: 1362 LCRQFANSVLPCYPG 1376
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 246 LINLPDDYSELINTVSLFTCPNSDREDSRNPALCLICGDMLCSQSYCCQTELF 298
L+ LP++Y+ + TC + ++PA+CL+CG +C + CC+ + +
Sbjct: 1747 LLQLPENYNTIFQYYHRKTCSVCTKV-PKDPAVCLVCGTFVCLKGLCCKQQSY 1798
>sp|O13731|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1
Length = 2052
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 117 TSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL- 175
S CGH+MH C+ Y+ N L + F+CPLC LSN LP+
Sbjct: 1425 VSGCGHLMHLGCFKNYYVARSMYRNDVTAGLSEYYYKYSTAKFFMCPLCRSLSNVLLPMP 1484
Query: 176 -IPAL 179
IP +
Sbjct: 1485 QIPKM 1489
>sp|Q53EL6|PDCD4_HUMAN Programmed cell death protein 4 OS=Homo sapiens GN=PDCD4 PE=1 SV=2
Length = 469
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 56 VYYTCILCQEEQALTKQNDALVLAAFVQQST----VMFRNRNADRTDFKVNSLYISLEHQ 111
VY T +L +E+A K ++ F T M R+ N V L +SL +
Sbjct: 151 VYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALE 210
Query: 112 GPAPH--------TSTCGHVMHSTCWSKYFDNIL 137
G A H + CG VM +T K FD +L
Sbjct: 211 GKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLL 244
>sp|Q07963|UBR2_YEAST E3 ubiquitin-protein ligase UBR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBR2 PE=1 SV=1
Length = 1872
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALP 174
P CGH H+ C S + +I +N+ + P S+ CP+C LSN+ LP
Sbjct: 1314 PVLRACGHGSHTKCLSGHMKSIRGIQNQTTKNI--PLSYG--SGLIYCPVCNSLSNSFLP 1369
>sp|P19812|UBR1_YEAST E3 ubiquitin-protein ligase UBR1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=UBR1 PE=1 SV=1
Length = 1950
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 17/57 (29%)
Query: 119 TCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175
+C H +H C+ +Y Q F N F+CPLC+ SN LPL
Sbjct: 1294 SCNHHIHHNCFKRYV---------------QKKRF--SSNAFICPLCQTFSNCTLPL 1333
>sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1
Length = 467
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 56 VYYTCILCQEEQALTKQNDALVLAAFVQQST----VMFRNRNADRTDFKVNSLYISLEHQ 111
VY T +L +E+A K ++ F T M ++ N + V L +SL +
Sbjct: 149 VYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVSEMLKDLNLGEMKYSVPVLAVSLALE 208
Query: 112 GPAPH--------TSTCGHVMHSTCWSKYFDNIL 137
G A H + CG V+ T K FD +L
Sbjct: 209 GKASHREMTSKLISDLCGTVVSKTDVEKSFDKLL 242
>sp|P44102|Y1044_HAEIN Uncharacterized protein HI_1044 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1044 PE=3 SV=1
Length = 203
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 43 LGPNQTPRPNTGPVYY--TCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFK 100
+GPN+ P P G VY C++ N L L F+QQ + F+ + + D
Sbjct: 77 IGPNELPTPPWGSVYLDPECVIF--------GNSLLALRDFLQQHQIAFQTQQDEPEDHI 128
Query: 101 VNSLYISLEHQGPAPHTSTCGHVMHSTCWSKYFDNILAK-ENRRPYR 146
L ++ PH T H W+ +F L+K EN Y+
Sbjct: 129 GLMLMLAAYLAENRPHLLTKFLREHFLTWAYHFLEQLSKIENSDFYQ 175
>sp|O60014|UBR1_KLULA E3 ubiquitin-protein ligase UBR1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=UBR1 PE=3 SV=2
Length = 1945
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 108 LEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167
L H+ +C H +H C+ Y D ++ S D+ F+CPLC+
Sbjct: 1259 LMHESTQKVLVSCNHAVHYRCFKHYID-------------KKRYSTDL----FICPLCQT 1301
Query: 168 LSNAALPL 175
N+ +P+
Sbjct: 1302 YCNSVIPV 1309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,653,818
Number of Sequences: 539616
Number of extensions: 4495625
Number of successful extensions: 10832
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10789
Number of HSP's gapped (non-prelim): 35
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)