Query psy9235
Match_columns 317
No_of_seqs 260 out of 387
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:20:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ct0_A Non-SMC element 1 homol 96.8 0.00041 1.4E-08 52.8 2.0 39 119-178 33-71 (74)
2 2kiz_A E3 ubiquitin-protein li 96.3 0.0017 5.8E-08 47.0 2.3 35 117-174 32-66 (69)
3 1chc_A Equine herpes virus-1 r 96.1 0.0039 1.3E-07 44.8 3.4 40 115-177 19-58 (68)
4 2xeu_A Ring finger protein 4; 96.0 0.003 1E-07 44.5 2.4 21 114-134 22-42 (64)
5 2ecm_A Ring finger and CHY zin 96.0 0.0022 7.4E-08 44.1 1.4 20 115-134 22-41 (55)
6 1iym_A EL5; ring-H2 finger, ub 95.8 0.0027 9.2E-08 43.8 1.4 15 119-133 26-40 (55)
7 2ea6_A Ring finger protein 4; 95.8 0.0035 1.2E-07 44.8 2.1 21 114-134 34-54 (69)
8 2ep4_A Ring finger protein 24; 95.8 0.0047 1.6E-07 45.2 2.8 17 118-134 34-50 (74)
9 1v87_A Deltex protein 2; ring- 95.7 0.0051 1.7E-07 48.8 2.9 40 115-172 56-95 (114)
10 3ng2_A RNF4, snurf, ring finge 95.7 0.004 1.4E-07 44.9 1.8 20 115-134 30-49 (71)
11 2ct2_A Tripartite motif protei 95.6 0.0051 1.7E-07 46.2 2.2 35 115-169 32-66 (88)
12 2ecl_A Ring-box protein 2; RNF 95.5 0.0048 1.6E-07 46.6 1.8 20 115-134 43-62 (81)
13 1x4j_A Ring finger protein 38; 95.4 0.004 1.4E-07 45.9 1.1 19 116-134 40-58 (75)
14 2ecw_A Tripartite motif-contai 95.3 0.013 4.3E-07 43.4 3.6 38 115-169 32-69 (85)
15 2ysl_A Tripartite motif-contai 95.3 0.011 3.6E-07 43.0 2.9 34 115-168 33-66 (73)
16 1g25_A CDK-activating kinase a 95.0 0.0071 2.4E-07 43.3 1.4 19 116-134 22-40 (65)
17 2ect_A Ring finger protein 126 94.8 0.0058 2E-07 45.1 0.4 15 119-133 35-49 (78)
18 2l0b_A E3 ubiquitin-protein li 94.8 0.01 3.5E-07 45.6 1.8 18 116-133 57-74 (91)
19 2ecy_A TNF receptor-associated 94.7 0.015 5.1E-07 41.7 2.4 17 118-134 31-47 (66)
20 2ecv_A Tripartite motif-contai 94.6 0.018 6.1E-07 42.6 2.7 37 117-170 34-70 (85)
21 2csy_A Zinc finger protein 183 94.4 0.02 6.9E-07 42.6 2.6 33 115-170 28-60 (81)
22 3dpl_R Ring-box protein 1; ubi 94.4 0.017 5.8E-07 46.4 2.3 20 114-133 67-86 (106)
23 2d8t_A Dactylidin, ring finger 94.2 0.02 6.7E-07 41.7 2.1 32 116-170 29-60 (71)
24 2egp_A Tripartite motif-contai 94.2 0.0096 3.3E-07 43.8 0.3 37 118-170 28-64 (79)
25 2ecj_A Tripartite motif-contai 94.1 0.024 8.3E-07 39.0 2.2 19 116-134 29-47 (58)
26 1t1h_A Gspef-atpub14, armadill 94.0 0.029 1E-06 41.2 2.8 22 113-134 19-40 (78)
27 2yur_A Retinoblastoma-binding 94.0 0.023 7.9E-07 41.8 2.1 32 115-167 28-60 (74)
28 1e4u_A Transcriptional repress 93.9 0.023 7.8E-07 43.0 2.0 30 119-170 32-61 (78)
29 1jm7_A BRCA1, breast cancer ty 93.9 0.025 8.5E-07 44.3 2.2 35 114-168 33-67 (112)
30 4ayc_A E3 ubiquitin-protein li 93.8 0.029 1E-06 46.2 2.7 19 115-133 66-84 (138)
31 3lrq_A E3 ubiquitin-protein li 93.7 0.03 1E-06 43.7 2.3 34 114-169 34-68 (100)
32 3fl2_A E3 ubiquitin-protein li 93.5 0.036 1.2E-06 44.6 2.6 33 115-169 65-97 (124)
33 2ecn_A Ring finger protein 141 93.3 0.02 6.8E-07 41.3 0.6 18 116-133 28-45 (70)
34 2ysj_A Tripartite motif-contai 93.2 0.053 1.8E-06 38.2 2.8 20 115-134 33-52 (63)
35 2djb_A Polycomb group ring fin 93.1 0.06 2.1E-06 39.1 3.0 31 117-170 31-61 (72)
36 4ap4_A E3 ubiquitin ligase RNF 93.0 0.041 1.4E-06 43.8 2.2 21 114-134 26-46 (133)
37 3l11_A E3 ubiquitin-protein li 93.0 0.026 8.8E-07 44.9 0.9 35 114-170 27-61 (115)
38 2y43_A E3 ubiquitin-protein li 92.8 0.056 1.9E-06 41.7 2.6 20 115-134 35-55 (99)
39 2d8s_A Cellular modulator of i 92.1 0.1 3.5E-06 39.6 3.2 32 121-173 41-72 (80)
40 3ztg_A E3 ubiquitin-protein li 92.0 0.062 2.1E-06 40.7 1.9 31 117-168 28-59 (92)
41 2ckl_B Ubiquitin ligase protei 91.6 0.078 2.7E-06 44.7 2.3 20 115-134 67-87 (165)
42 4a0k_B E3 ubiquitin-protein li 91.3 0.037 1.3E-06 45.3 0.0 19 116-134 80-98 (117)
43 1z6u_A NP95-like ring finger p 91.3 0.086 2.9E-06 44.4 2.2 34 113-168 89-122 (150)
44 2ckl_A Polycomb group ring fin 91.1 0.12 4E-06 40.6 2.8 34 114-170 27-61 (108)
45 3hct_A TNF receptor-associated 90.9 0.12 4E-06 41.3 2.6 22 114-135 30-51 (118)
46 4ap4_A E3 ubiquitin ligase RNF 90.9 0.092 3.1E-06 41.7 2.0 20 115-134 92-111 (133)
47 3j20_W 30S ribosomal protein S 90.7 0.083 2.8E-06 39.0 1.4 39 245-289 4-47 (63)
48 3nw0_A Non-structural maintena 90.4 0.11 3.7E-06 47.3 2.2 42 114-176 193-234 (238)
49 1rmd_A RAG1; V(D)J recombinati 89.5 0.18 6E-06 39.9 2.5 23 113-135 34-56 (116)
50 1qxf_A GR2, 30S ribosomal prot 88.9 0.14 4.7E-06 38.1 1.3 30 260-289 5-39 (66)
51 3knv_A TNF receptor-associated 83.9 0.3 1E-05 40.6 1.0 33 113-167 42-74 (141)
52 2ea5_A Cell growth regulator w 83.5 0.79 2.7E-05 33.3 3.0 39 113-178 26-65 (68)
53 2xzm_6 RPS27E; ribosome, trans 83.4 0.4 1.4E-05 36.9 1.4 29 260-288 30-63 (81)
54 1wim_A KIAA0161 protein; ring 83.1 0.69 2.4E-05 35.2 2.7 37 118-169 24-62 (94)
55 2ecg_A Baculoviral IAP repeat- 82.7 0.68 2.3E-05 33.9 2.4 35 114-175 37-72 (75)
56 2y1n_A E3 ubiquitin-protein li 82.0 1.1 3.8E-05 43.7 4.3 41 113-175 343-383 (389)
57 4ic3_A E3 ubiquitin-protein li 81.5 0.8 2.7E-05 33.5 2.4 36 113-175 35-71 (74)
58 1jm7_B BARD1, BRCA1-associated 81.4 0.39 1.4E-05 38.1 0.8 20 114-133 34-54 (117)
59 3u5c_b RP61, YS20, 40S ribosom 80.4 0.47 1.6E-05 36.6 0.8 31 259-289 31-66 (82)
60 3k1l_B Fancl; UBC, ring, RWD, 79.0 0.89 3E-05 44.1 2.4 38 118-167 332-369 (381)
61 3iz6_X 40S ribosomal protein S 78.5 0.55 1.9E-05 36.6 0.7 30 260-289 34-68 (86)
62 3hcs_A TNF receptor-associated 78.2 1.1 3.8E-05 37.6 2.6 22 114-135 30-51 (170)
63 1vyx_A ORF K3, K3RING; zinc-bi 74.8 1.4 4.9E-05 31.4 2.0 13 123-135 32-44 (60)
64 1vq8_Z 50S ribosomal protein L 74.3 1 3.5E-05 34.7 1.2 43 251-293 15-62 (83)
65 2vje_A E3 ubiquitin-protein li 71.0 2.5 8.5E-05 30.0 2.5 34 119-175 27-61 (64)
66 2vje_B MDM4 protein; proto-onc 70.5 2.6 8.9E-05 29.8 2.6 35 118-175 25-60 (63)
67 2kre_A Ubiquitin conjugation f 68.8 2.8 9.6E-05 32.7 2.6 23 111-133 38-60 (100)
68 2yu4_A E3 SUMO-protein ligase 68.1 4.8 0.00016 30.6 3.8 39 112-167 17-58 (94)
69 3c5k_A HD6, histone deacetylas 67.9 2.6 8.8E-05 33.9 2.2 27 262-290 24-50 (109)
70 1bor_A Transcription factor PM 67.8 0.76 2.6E-05 31.8 -0.8 17 115-131 19-35 (56)
71 2yho_A E3 ubiquitin-protein li 67.2 3.9 0.00014 30.3 3.0 37 113-176 29-66 (79)
72 2kr4_A Ubiquitin conjugation f 62.3 4.2 0.00014 30.5 2.4 24 111-134 23-46 (85)
73 1wg2_A Zinc finger (AN1-like) 62.3 4.6 0.00016 29.7 2.5 27 262-289 15-41 (64)
74 1wgm_A Ubiquitin conjugation f 62.1 4.4 0.00015 31.4 2.5 24 111-134 31-55 (98)
75 1wfh_A Zinc finger (AN1-like) 59.4 6.2 0.00021 29.0 2.7 27 262-289 15-41 (64)
76 3mjh_B Early endosome antigen 58.5 3 0.0001 26.9 0.8 8 159-166 5-12 (34)
77 2g45_A Ubiquitin carboxyl-term 57.2 5.3 0.00018 33.0 2.3 26 263-290 35-60 (129)
78 2c2l_A CHIP, carboxy terminus 55.7 4.6 0.00016 35.7 1.9 25 110-134 216-240 (281)
79 1wfp_A Zinc finger (AN1-like) 54.7 7.3 0.00025 29.4 2.5 28 261-289 24-51 (74)
80 2uzg_A Ubiquitin carboxyl-term 51.7 13 0.00045 28.9 3.7 28 261-289 24-53 (97)
81 1pft_A TFIIB, PFTFIIBN; N-term 50.2 3.7 0.00013 27.9 0.2 26 262-287 5-35 (50)
82 3mpx_A FYVE, rhogef and PH dom 47.1 5.5 0.00019 38.0 1.0 33 261-295 374-408 (434)
83 1dl6_A Transcription factor II 43.3 13 0.00043 26.4 2.1 24 263-286 12-40 (58)
84 1wfl_A Zinc finger protein 216 42.7 11 0.00038 28.4 1.8 27 262-289 25-51 (74)
85 2k2d_A Ring finger and CHY zin 41.0 6.8 0.00023 29.7 0.4 36 197-236 16-51 (79)
86 3pwf_A Rubrerythrin; non heme 41.0 11 0.00037 32.3 1.8 24 261-284 137-161 (170)
87 3t6p_A Baculoviral IAP repeat- 38.9 10 0.00035 36.0 1.4 36 113-175 306-342 (345)
88 1twf_L ABC10-alpha, DNA-direct 38.2 10 0.00034 28.2 1.0 27 261-287 27-57 (70)
89 1wd2_A Ariadne-1 protein homol 37.5 14 0.00048 26.3 1.6 29 261-289 5-39 (60)
90 2ida_A Hypothetical protein; z 36.2 7.7 0.00026 30.9 0.1 29 262-290 18-48 (102)
91 1wff_A Riken cDNA 2810002D23 p 36.0 21 0.00073 27.5 2.5 28 261-289 24-52 (85)
92 3lrq_A E3 ubiquitin-protein li 35.7 16 0.00056 27.7 1.9 27 261-288 21-47 (100)
93 2i50_A Ubiquitin carboxyl-term 35.1 8.9 0.00031 31.4 0.3 28 263-290 29-68 (126)
94 1x4w_A Hypothetical protein FL 29.5 14 0.00048 27.3 0.5 26 262-289 15-44 (67)
95 1yuz_A Nigerythrin; rubrythrin 28.7 22 0.00075 31.1 1.7 24 261-284 170-194 (202)
96 2d74_B Translation initiation 28.5 26 0.0009 29.5 2.1 76 197-285 47-134 (148)
97 1gh9_A 8.3 kDa protein (gene M 28.3 20 0.00069 26.6 1.2 25 260-286 2-30 (71)
98 3v2d_5 50S ribosomal protein L 25.8 16 0.00054 26.3 0.2 23 261-284 29-51 (60)
99 3htk_C E3 SUMO-protein ligase 25.4 37 0.0013 31.3 2.7 36 111-167 190-228 (267)
100 2zjr_Z 50S ribosomal protein L 25.1 18 0.00061 26.0 0.4 24 261-285 29-52 (60)
101 1nee_A EIF-2-beta, probable tr 25.0 29 0.00099 28.9 1.7 77 196-285 44-132 (138)
102 3ihp_A Ubiquitin carboxyl-term 24.1 72 0.0025 33.7 5.0 25 262-288 215-239 (854)
103 3mhs_A Ubiquitin carboxyl-term 24.1 36 0.0012 32.6 2.5 28 262-289 48-75 (476)
104 2f42_A STIP1 homology and U-bo 24.0 40 0.0014 29.1 2.5 24 111-134 115-138 (179)
105 1wys_A Riken cDNA 2310008M20 p 24.0 46 0.0016 24.9 2.5 27 262-289 14-42 (75)
106 1x4u_A Zinc finger, FYVE domai 22.4 54 0.0018 24.4 2.7 32 262-295 14-47 (84)
107 1dvp_A HRS, hepatocyte growth 21.7 49 0.0017 28.8 2.7 31 263-295 162-194 (220)
108 3k7a_M Transcription initiatio 21.6 37 0.0013 31.8 1.9 27 261-287 20-53 (345)
109 2e9h_A EIF-5, eukaryotic trans 20.9 40 0.0014 28.7 1.8 24 250-273 89-114 (157)
110 3h0g_L DNA-directed RNA polyme 20.7 43 0.0015 24.3 1.7 25 260-284 19-46 (63)
111 1vfy_A Phosphatidylinositol-3- 20.4 43 0.0015 24.3 1.7 30 264-295 13-44 (73)
112 1ffk_W Ribosomal protein L37AE 20.1 66 0.0023 24.0 2.7 40 251-290 15-59 (73)
No 1
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.84 E-value=0.00041 Score=52.75 Aligned_cols=39 Identities=36% Similarity=0.647 Sum_probs=29.9
Q ss_pred cCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEeccCCC
Q psy9235 119 TCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLIPA 178 (317)
Q Consensus 119 sCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ip~ 178 (317)
.|||.+|..|+.+|+++. . .=.||+|++.-..-+|-+|+
T Consensus 33 ~C~h~fH~~Ci~kWl~~~------------~---------~~~CP~Cr~~w~~~~~~~~~ 71 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSN------------A---------EPRCPHCNDYWPHEIPKSGP 71 (74)
T ss_dssp SSCCEECHHHHHHHSTTC------------S---------SCCCTTTCSCCCSCCCCCCS
T ss_pred CCCchhhHHHHHHHHHhc------------C---------CCCCCCCcCcCCCCCCCCCC
Confidence 899999999999998432 1 11799999887766666554
No 2
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=96.30 E-value=0.0017 Score=46.98 Aligned_cols=35 Identities=29% Similarity=0.663 Sum_probs=26.9
Q ss_pred eecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEec
Q psy9235 117 TSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALP 174 (317)
Q Consensus 117 vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP 174 (317)
+..|||..|..|+.++++.. ..||+||.--...+|
T Consensus 32 ~~~C~H~fc~~Ci~~~~~~~-----------------------~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 32 RLPCMHLFHQVCVDQWLITN-----------------------KKCPICRVDIEAQLP 66 (69)
T ss_dssp ECTTSCEEEHHHHHHHHHHC-----------------------SBCTTTCSBSCSCCC
T ss_pred EeCCCCHHHHHHHHHHHHcC-----------------------CCCcCcCccccCcCC
Confidence 34599999999999997431 149999987766665
No 3
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.10 E-value=0.0039 Score=44.79 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=31.2
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEeccCC
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLIP 177 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ip 177 (317)
..+..|||..|..|+.++++. ...||+||.--..++..+.
T Consensus 19 ~~~~~C~H~fc~~Ci~~~~~~-----------------------~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 19 SMALPCLHAFCYVCITRWIRQ-----------------------NPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp EEETTTTEEESTTHHHHHHHH-----------------------SCSTTTTCCCCCCEECCCC
T ss_pred cEecCCCCeeHHHHHHHHHhC-----------------------cCcCcCCChhhHhhhhccc
Confidence 467789999999999999732 1279999988877776643
No 4
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.02 E-value=0.003 Score=44.51 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=18.2
Q ss_pred CceeecCCchhhHHHHHHHhh
Q psy9235 114 APHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~ 134 (317)
.+.+..|||..|..|+.++++
T Consensus 22 ~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 22 LIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CEEEETTSCEEEHHHHHHHHH
T ss_pred CEEeCCCCCchhHHHHHHHHH
Confidence 457788999999999999984
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.96 E-value=0.0022 Score=44.14 Aligned_cols=20 Identities=35% Similarity=1.009 Sum_probs=16.8
Q ss_pred ceeecCCchhhHHHHHHHhh
Q psy9235 115 PHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~ 134 (317)
+.+..|||..|..|+.++++
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp EEECTTSCEEETTHHHHHHH
T ss_pred eEecCCCCcccHHHHHHHHH
Confidence 44556999999999999974
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.85 E-value=0.0027 Score=43.76 Aligned_cols=15 Identities=33% Similarity=0.961 Sum_probs=14.0
Q ss_pred cCCchhhHHHHHHHh
Q psy9235 119 TCGHVMHSTCWSKYF 133 (317)
Q Consensus 119 sCGH~mH~~C~~~Y~ 133 (317)
.|||..|.+|+.+++
T Consensus 26 ~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 26 RCGHGFHAECVDMWL 40 (55)
T ss_dssp SSCCEECTTHHHHTT
T ss_pred CCCCcccHHHHHHHH
Confidence 599999999999997
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.0035 Score=44.83 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred CceeecCCchhhHHHHHHHhh
Q psy9235 114 APHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~ 134 (317)
.+++..|||..|..|+.++++
T Consensus 34 ~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 34 LIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CEEECSSSCEEEHHHHHHHHH
T ss_pred CeEeCCCCChhcHHHHHHHHH
Confidence 345678999999999999984
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.0047 Score=45.20 Aligned_cols=17 Identities=29% Similarity=0.886 Sum_probs=15.0
Q ss_pred ecCCchhhHHHHHHHhh
Q psy9235 118 STCGHVMHSTCWSKYFD 134 (317)
Q Consensus 118 ssCGH~mH~~C~~~Y~~ 134 (317)
..|||..|..|+.++++
T Consensus 34 ~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 34 CPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp ETTTEEEEHHHHHHHHH
T ss_pred cCCCCEecHHHHHHHHH
Confidence 35999999999999984
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=95.73 E-value=0.0051 Score=48.77 Aligned_cols=40 Identities=20% Similarity=0.506 Sum_probs=29.0
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceE
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAA 172 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~v 172 (317)
..+..|||..|..|+..++.... ......||+||+.-...
T Consensus 56 ~~~~~C~H~Fh~~Ci~~wl~~~~------------------~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 56 GRLTKCSHAFHLLCLLAMYCNGN------------------KDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp EEESSSCCEECHHHHHHHHHHTC------------------CSSCCBCTTTCCBSSSC
T ss_pred eecCCCCCcccHHHHHHHHHccc------------------CCCCCcCCCCCCccCCC
Confidence 34677999999999999984321 12345899999876544
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=95.67 E-value=0.004 Score=44.95 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=17.2
Q ss_pred ceeecCCchhhHHHHHHHhh
Q psy9235 115 PHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~ 134 (317)
.++..|||..|..|+.++++
T Consensus 30 ~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 30 IVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp EEECTTSCEEEHHHHHHHHH
T ss_pred eEeCCCCChHhHHHHHHHHH
Confidence 45668999999999999974
No 11
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.58 E-value=0.0051 Score=46.18 Aligned_cols=35 Identities=29% Similarity=0.740 Sum_probs=26.6
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcccc
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLS 169 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLs 169 (317)
+++..|||..|..|++++++.. .+.+.||+||..-
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~--------------------~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASS--------------------INGVRCPFCSKIT 66 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHC--------------------SSCBCCTTTCCCB
T ss_pred eEECCCCChhhHHHHHHHHHcC--------------------CCCcCCCCCCCcc
Confidence 3455799999999999998532 1256899999853
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.0048 Score=46.64 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.4
Q ss_pred ceeecCCchhhHHHHHHHhh
Q psy9235 115 PHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~ 134 (317)
..+..|||..|..|+.++++
T Consensus 43 ~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 43 VVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp EEEETTSCEEEHHHHHHHTT
T ss_pred EEeCCCCCccChHHHHHHHH
Confidence 34456999999999999973
No 13
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.43 E-value=0.004 Score=45.89 Aligned_cols=19 Identities=26% Similarity=0.747 Sum_probs=15.8
Q ss_pred eeecCCchhhHHHHHHHhh
Q psy9235 116 HTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~~ 134 (317)
.+..|||..|..|+.++++
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp EEETTTEEEETTHHHHHHH
T ss_pred EEECCCCHhHHHHHHHHHH
Confidence 3445999999999999973
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.32 E-value=0.013 Score=43.39 Aligned_cols=38 Identities=18% Similarity=0.530 Sum_probs=28.0
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcccc
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLS 169 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLs 169 (317)
+++..|||..|..|+.+|++... . ..+.+.||+||..-
T Consensus 32 p~~~~CgH~fC~~Ci~~~~~~~~-----------~------~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 32 PVSADCNHSFCRACITLNYESNR-----------N------TDGKGNCPVCRVPY 69 (85)
T ss_dssp CEECTTSCCBCHHHHHHHHHHSB-----------C------TTSCBCCTTTCCCC
T ss_pred ceeCCCCCHHHHHHHHHHHHhcc-----------C------CCCCCCCCCCCCcC
Confidence 34567999999999999985431 0 23467999999753
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.26 E-value=0.011 Score=42.98 Aligned_cols=34 Identities=32% Similarity=0.672 Sum_probs=25.8
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccc
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECL 168 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsL 168 (317)
+++..|||..|..|+.++++. ..+.+.||+||.-
T Consensus 33 ~~~~~CgH~fC~~Ci~~~~~~--------------------~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 33 PVTIDCGHNFCLKCITQIGET--------------------SCGFFKCPLCKTS 66 (73)
T ss_dssp EEECTTCCEEEHHHHHHHCSS--------------------SCSCCCCSSSCCC
T ss_pred eEEcCCCChhhHHHHHHHHHc--------------------CCCCCCCCCCCCc
Confidence 344589999999999999741 1235689999975
No 16
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.05 E-value=0.0071 Score=43.26 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=16.6
Q ss_pred eeecCCchhhHHHHHHHhh
Q psy9235 116 HTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~~ 134 (317)
++..|||..|..|+.+++.
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp EECTTCCCEEHHHHHHHHH
T ss_pred ecCCCCCHhHHHHHHHHHH
Confidence 5678999999999999963
No 17
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.82 E-value=0.0058 Score=45.15 Aligned_cols=15 Identities=27% Similarity=0.968 Sum_probs=14.1
Q ss_pred cCCchhhHHHHHHHh
Q psy9235 119 TCGHVMHSTCWSKYF 133 (317)
Q Consensus 119 sCGH~mH~~C~~~Y~ 133 (317)
.|||..|..|+.+++
T Consensus 35 ~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 35 PCNHLFHDSCIVPWL 49 (78)
T ss_dssp TTSCEEETTTTHHHH
T ss_pred CCCCeecHHHHHHHH
Confidence 599999999999997
No 18
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=94.80 E-value=0.01 Score=45.61 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=15.3
Q ss_pred eeecCCchhhHHHHHHHh
Q psy9235 116 HTSTCGHVMHSTCWSKYF 133 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~ 133 (317)
.+..|||..|..|+.+++
T Consensus 57 ~~l~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 57 TELPCHHYFHKPCVSIWL 74 (91)
T ss_dssp EEETTTEEEEHHHHHHHH
T ss_pred EecCCCChHHHHHHHHHH
Confidence 334599999999999997
No 19
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.015 Score=41.66 Aligned_cols=17 Identities=24% Similarity=0.769 Sum_probs=15.3
Q ss_pred ecCCchhhHHHHHHHhh
Q psy9235 118 STCGHVMHSTCWSKYFD 134 (317)
Q Consensus 118 ssCGH~mH~~C~~~Y~~ 134 (317)
..|||..|..|++++++
T Consensus 31 ~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 31 TECGHRFCESCMAALLS 47 (66)
T ss_dssp CSSSCCCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999984
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.64 E-value=0.018 Score=42.55 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=27.4
Q ss_pred eecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 117 TSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 117 vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
+..|||..|..|+.+|++.... ..+.+.||+||..-.
T Consensus 34 ~~~CgH~fC~~Ci~~~~~~~~~-----------------~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 34 SLDCGHSFCQACLTANHKKSML-----------------DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCSSSCCBCTTHHHHHHHHHHH-----------------TTSCCCCTTTCCSSC
T ss_pred eCCCCCHHHHHHHHHHHHHhhc-----------------CCCCCcCCCCCCccC
Confidence 3479999999999999865321 123578999997654
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.44 E-value=0.02 Score=42.62 Aligned_cols=33 Identities=21% Similarity=0.529 Sum_probs=26.4
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
+++..|||..|..|+.++++. ...||+||.-.+
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 28 PVVTKCRHYFCESCALEHFRA-----------------------TPRCYICDQPTG 60 (81)
T ss_dssp EEECTTSCEEEHHHHHHHHHH-----------------------CSBCSSSCCBCC
T ss_pred eeEccCCCHhHHHHHHHHHHC-----------------------CCcCCCcCcccc
Confidence 456789999999999999842 227999998765
No 22
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=94.41 E-value=0.017 Score=46.37 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=17.3
Q ss_pred CceeecCCchhhHHHHHHHh
Q psy9235 114 APHTSTCGHVMHSTCWSKYF 133 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~ 133 (317)
.+....|||..|..|...++
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWL 86 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHH
T ss_pred eEeecccCcEECHHHHHHHH
Confidence 45667899999999999997
No 23
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.23 E-value=0.02 Score=41.68 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=24.7
Q ss_pred eeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 116 HTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
++..|||..|..|+.++++. ...||+||.--.
T Consensus 29 ~~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 29 VSLPCKHVFCYLCVKGASWL-----------------------GKRCALCRQEIP 60 (71)
T ss_dssp EEETTTEEEEHHHHHHCTTC-----------------------SSBCSSSCCBCC
T ss_pred EEccCCCHHHHHHHHHHHHC-----------------------CCcCcCcCchhC
Confidence 45579999999999998721 147999998644
No 24
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.15 E-value=0.0096 Score=43.79 Aligned_cols=37 Identities=19% Similarity=0.448 Sum_probs=26.5
Q ss_pred ecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 118 STCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 118 ssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
..|||..|..|+.+|++.... ...+...||+||..-.
T Consensus 28 l~CgH~fC~~Ci~~~~~~~~~----------------~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 28 LDCGHSLCRACITVSNKEAVT----------------SMGGKSSCPVCGISYS 64 (79)
T ss_dssp CSSSCCCCHHHHSCCCCCCSS----------------SCCCCCCCSSSCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhccc----------------CCCCCCcCCCCCCcCC
Confidence 369999999999999754210 0234679999997643
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.06 E-value=0.024 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.749 Sum_probs=16.3
Q ss_pred eeecCCchhhHHHHHHHhh
Q psy9235 116 HTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~~ 134 (317)
++..|||..|..|++++++
T Consensus 29 ~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 29 VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCCSSCCCCCHHHHHHHTT
T ss_pred EeCCCCCccCHHHHHHHHH
Confidence 4457999999999999974
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=94.04 E-value=0.029 Score=41.24 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCceeecCCchhhHHHHHHHhh
Q psy9235 113 PAPHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 113 ~g~~vssCGH~mH~~C~~~Y~~ 134 (317)
..+++..|||..+..|+.++++
T Consensus 19 ~~Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 19 KDPVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSEEEETTTEEEEHHHHHHHHT
T ss_pred cCCEEcCCCCeecHHHHHHHHH
Confidence 3567779999999999999983
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=93.97 E-value=0.023 Score=41.77 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=24.9
Q ss_pred ceeec-CCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcc
Q psy9235 115 PHTST-CGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167 (317)
Q Consensus 115 ~~vss-CGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrs 167 (317)
+++.. |||..|..|+.++++.. +.+.||+||.
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~~---------------------~~~~CP~Cr~ 60 (74)
T 2yur_A 28 AVVIPCCGNSYCDECIRTALLES---------------------DEHTCPTCHQ 60 (74)
T ss_dssp CEECSSSCCEECTTHHHHHHHHS---------------------SSSCCSSSCC
T ss_pred CeEcCCCCCHHHHHHHHHHHHhc---------------------CCCcCCCCCC
Confidence 44455 99999999999998531 1358999998
No 28
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=93.89 E-value=0.023 Score=43.01 Aligned_cols=30 Identities=30% Similarity=0.719 Sum_probs=23.9
Q ss_pred cCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 119 TCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 119 sCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
.|||..+..||.++.+. +.+.||+||....
T Consensus 32 ~CGH~fC~~Cl~~~~~~----------------------~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTD----------------------ENGLCPACRKPYP 61 (78)
T ss_dssp TTSCCCCHHHHHHHTTS----------------------SCSBCTTTCCBCS
T ss_pred CCCCCcCHHHHHHHHhc----------------------CCCCCCCCCCccC
Confidence 59999999999988521 2568999998654
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.87 E-value=0.025 Score=44.31 Aligned_cols=35 Identities=29% Similarity=0.674 Sum_probs=26.4
Q ss_pred CceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccc
Q psy9235 114 APHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECL 168 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsL 168 (317)
.+++..|||..|..|+.+++... .+.+.||+||.-
T Consensus 33 ~p~~~~CgH~fC~~Ci~~~~~~~--------------------~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 33 EPVSTKCDHIFCKFCMLKLLNQK--------------------KGPSQCPLCKND 67 (112)
T ss_dssp SCCBCTTSCCCCSHHHHHHHHSS--------------------SSSCCCTTTSCC
T ss_pred CeEECCCCCHHHHHHHHHHHHhC--------------------CCCCCCcCCCCc
Confidence 34456899999999999998431 134689999874
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=93.84 E-value=0.029 Score=46.24 Aligned_cols=19 Identities=26% Similarity=0.602 Sum_probs=16.3
Q ss_pred ceeecCCchhhHHHHHHHh
Q psy9235 115 PHTSTCGHVMHSTCWSKYF 133 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~ 133 (317)
+++..|||..|..|+.+|+
T Consensus 66 ~~~~~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 66 AVTLNCAHSFCSYCINEWM 84 (138)
T ss_dssp EEEETTSCEEEHHHHHHHT
T ss_pred ceECCCCCCccHHHHHHHH
Confidence 3566799999999999986
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=93.67 E-value=0.03 Score=43.69 Aligned_cols=34 Identities=15% Similarity=0.483 Sum_probs=27.0
Q ss_pred Ccee-ecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcccc
Q psy9235 114 APHT-STCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLS 169 (317)
Q Consensus 114 g~~v-ssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLs 169 (317)
.+++ ..|||..|..|+.++++.. .+.||+||.--
T Consensus 34 ~p~~~~~CgH~FC~~Ci~~~~~~~----------------------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 34 DARLCPHCSKLCCFSCIRRWLTEQ----------------------RAQCPHCRAPL 68 (100)
T ss_dssp SEEECTTTCCEEEHHHHHHHHHHT----------------------CSBCTTTCCBC
T ss_pred CccccCCCCChhhHHHHHHHHHHC----------------------cCCCCCCCCcC
Confidence 4566 8999999999999998432 15899999754
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.50 E-value=0.036 Score=44.64 Aligned_cols=33 Identities=30% Similarity=0.702 Sum_probs=25.5
Q ss_pred ceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcccc
Q psy9235 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLS 169 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLs 169 (317)
+++..|||..|..|+..++.. +.+.||+||.--
T Consensus 65 p~~~~CgH~fC~~Ci~~~~~~----------------------~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 65 PITTVCQHNVCKDCLDRSFRA----------------------QVFSCPACRYDL 97 (124)
T ss_dssp EEECTTSCEEEHHHHHHHHHT----------------------TCCBCTTTCCBC
T ss_pred cEEeeCCCcccHHHHHHHHhH----------------------CcCCCCCCCccC
Confidence 344589999999999999841 145899999754
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.30 E-value=0.02 Score=41.31 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.7
Q ss_pred eeecCCchhhHHHHHHHh
Q psy9235 116 HTSTCGHVMHSTCWSKYF 133 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~ 133 (317)
++..|||..|..|+.+++
T Consensus 28 ~~~~CgH~fc~~Ci~~~~ 45 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWS 45 (70)
T ss_dssp EEETTTEEECHHHHHHSS
T ss_pred cccCCCCcccHHHHHHHH
Confidence 456799999999999986
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.21 E-value=0.053 Score=38.24 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=17.2
Q ss_pred ceeecCCchhhHHHHHHHhh
Q psy9235 115 PHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~ 134 (317)
+++..|||..|..|++++++
T Consensus 33 p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 33 PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CEECTTSSEECHHHHHHHHH
T ss_pred eEEeCCCCcchHHHHHHHHH
Confidence 44558999999999999985
No 35
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.06 E-value=0.06 Score=39.12 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=24.5
Q ss_pred eecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 117 TSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 117 vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
+..|||..|..|+.++++. ...||+||..-.
T Consensus 31 ~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 61 (72)
T 2djb_A 31 ITECLHTFCKSCIVRHFYY-----------------------SNRCPKCNIVVH 61 (72)
T ss_dssp CSSSCCEECHHHHHHHHHH-----------------------CSSCTTTCCCCC
T ss_pred ECCCCCHHHHHHHHHHHHc-----------------------CCcCCCcCcccC
Confidence 3489999999999999842 137999998644
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.02 E-value=0.041 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=18.2
Q ss_pred CceeecCCchhhHHHHHHHhh
Q psy9235 114 APHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~ 134 (317)
.+++..|||..|..|+.+|++
T Consensus 26 ~~~~~~CgH~fc~~Ci~~~~~ 46 (133)
T 4ap4_A 26 LIVSTECGHVFCSQCLRDSLK 46 (133)
T ss_dssp CEEEETTCCEEEHHHHHHHHT
T ss_pred CeEecCCCChhhHHHHHHHHH
Confidence 457788999999999999974
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.96 E-value=0.026 Score=44.85 Aligned_cols=35 Identities=23% Similarity=0.683 Sum_probs=26.6
Q ss_pred CceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 114 APHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
.+++..|||..+..|+.++++. +.+.||+||.--.
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~~----------------------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 27 EPVTLPCNHTLCKPCFQSTVEK----------------------ASLCCPFCRRRVS 61 (115)
T ss_dssp SCEECTTSCEECHHHHCCCCCT----------------------TTSBCTTTCCBCH
T ss_pred ceeEcCCCCHHhHHHHHHHHhH----------------------CcCCCCCCCcccC
Confidence 4556689999999999988631 2368999998544
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=92.82 E-value=0.056 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=16.5
Q ss_pred ceee-cCCchhhHHHHHHHhh
Q psy9235 115 PHTS-TCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vs-sCGH~mH~~C~~~Y~~ 134 (317)
+++. .|||..|..|+.++++
T Consensus 35 p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 35 AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp EEECTTTCCEEEHHHHHHHHT
T ss_pred cCEECCCCCHhhHHHHHHHHH
Confidence 4444 7999999999999973
No 39
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.1 Score=39.65 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEe
Q psy9235 121 GHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAAL 173 (317)
Q Consensus 121 GH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vL 173 (317)
+|+.|..|+++++... +...|||||.--..-.
T Consensus 41 ~h~fH~~Cl~~Wl~~~---------------------~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 41 LHFVHQACLQQWIKSS---------------------DTRCCELCKYEFIMET 72 (80)
T ss_dssp SCCEETTHHHHHHHHH---------------------CCSBCSSSCCBCCCCC
T ss_pred CCeeCHHHHHHHHhhC---------------------CCCCCCCCCCeeecCc
Confidence 4999999999998542 1348999998755443
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.00 E-value=0.062 Score=40.71 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=23.9
Q ss_pred eec-CCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccc
Q psy9235 117 TST-CGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECL 168 (317)
Q Consensus 117 vss-CGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsL 168 (317)
+.. |||..+..|+.+++... +.+.||+||.-
T Consensus 28 ~~~~CgH~fC~~Ci~~~~~~~---------------------~~~~CP~Cr~~ 59 (92)
T 3ztg_A 28 VIPCCGNSYCDECIRTALLES---------------------DEHTCPTCHQN 59 (92)
T ss_dssp ECTTTCCEECHHHHHHHHHHC---------------------TTCCCTTTCCS
T ss_pred ECCCCCCHHHHHHHHHHHHhc---------------------CCCcCcCCCCc
Confidence 334 99999999999997421 23689999964
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=91.61 E-value=0.078 Score=44.72 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.8
Q ss_pred ceee-cCCchhhHHHHHHHhh
Q psy9235 115 PHTS-TCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vs-sCGH~mH~~C~~~Y~~ 134 (317)
+++. .|||..|..|+.+++.
T Consensus 67 p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 67 TMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp EEEETTTCCEEEHHHHHHHHH
T ss_pred cCEeCCCCChhHHHHHHHHHH
Confidence 4444 8999999999999984
No 42
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=91.32 E-value=0.037 Score=45.32 Aligned_cols=19 Identities=26% Similarity=0.698 Sum_probs=0.0
Q ss_pred eeecCCchhhHHHHHHHhh
Q psy9235 116 HTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 116 ~vssCGH~mH~~C~~~Y~~ 134 (317)
....|||..|..|...+++
T Consensus 80 ~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 80 AWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp -------------------
T ss_pred ccCCcCceEcHHHHHHHHH
Confidence 4457999999999999973
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.086 Score=44.40 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=27.0
Q ss_pred CCceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccc
Q psy9235 113 PAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECL 168 (317)
Q Consensus 113 ~g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsL 168 (317)
..+++..|||..+..|+.+++.. +.+.||+||.-
T Consensus 89 ~~pv~~~CgH~fC~~Ci~~~~~~----------------------~~~~CP~Cr~~ 122 (150)
T 1z6u_A 89 YQPVTTECFHNVCKDCLQRSFKA----------------------QVFSCPACRHD 122 (150)
T ss_dssp SSEEECTTSCEEEHHHHHHHHHT----------------------TCCBCTTTCCB
T ss_pred cCCEEcCCCCchhHHHHHHHHHh----------------------CCCcCCCCCcc
Confidence 34566799999999999999842 24589999975
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=91.15 E-value=0.12 Score=40.56 Aligned_cols=34 Identities=26% Similarity=0.699 Sum_probs=26.1
Q ss_pred Cceee-cCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccc
Q psy9235 114 APHTS-TCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170 (317)
Q Consensus 114 g~~vs-sCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN 170 (317)
.+++. .|||..|..|+.++++. ...||+||.-..
T Consensus 27 ~p~~~~~CgH~fC~~Ci~~~~~~-----------------------~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 27 DATTIIECLHSFCKTCIVRYLET-----------------------SKYCPICDVQVH 61 (108)
T ss_dssp SEEEETTTCCEEEHHHHHHHHTS-----------------------CSBCTTTCCBSC
T ss_pred CcCEeCCCCChhhHHHHHHHHHh-----------------------CCcCcCCCcccc
Confidence 45555 89999999999999732 147999997543
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=90.94 E-value=0.12 Score=41.35 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.1
Q ss_pred CceeecCCchhhHHHHHHHhhh
Q psy9235 114 APHTSTCGHVMHSTCWSKYFDN 135 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~s 135 (317)
.+++..|||..+..|+.++++.
T Consensus 30 ~p~~~~CgH~fC~~Ci~~~~~~ 51 (118)
T 3hct_A 30 EAVQTPCGHRFCKACIIKSIRD 51 (118)
T ss_dssp SEEECTTSCEEEHHHHHHHHHH
T ss_pred CeEECCcCChhhHHHHHHHHhh
Confidence 3456689999999999999853
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.94 E-value=0.092 Score=41.74 Aligned_cols=20 Identities=30% Similarity=0.667 Sum_probs=17.7
Q ss_pred ceeecCCchhhHHHHHHHhh
Q psy9235 115 PHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~Y~~ 134 (317)
.+...|||..|..|..++++
T Consensus 92 ~~~~~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 92 IVSTECGHVFCSQCLRDSLK 111 (133)
T ss_dssp EEEETTSBEEEHHHHHHHHH
T ss_pred eEeCCCCChhhHHHHHHHHH
Confidence 47789999999999999974
No 47
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.74 E-value=0.083 Score=38.95 Aligned_cols=39 Identities=26% Similarity=0.559 Sum_probs=29.6
Q ss_pred cccCCChhHHHHHHhhccccCCCCCCC-----CCCCceeeceeCceecCC
Q psy9235 245 RLINLPDDYSELINTVSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 245 ~l~~LP~~y~~L~~~~~~~~C~~c~~~-----~~~~P~lCL~CG~~~C~~ 289 (317)
+|+.-|+. ++.+.+||.|+.+ -+..++.|..||+++|-.
T Consensus 4 rLv~~PnS------~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~P 47 (63)
T 3j20_W 4 PIIPMPRS------RFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEP 47 (63)
T ss_dssp GGCCCCSC------CEEEEECSSSCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred ccccCCCC------cEEEEECCCCCCeeEEEecCCeEEEccCcCCEEecC
Confidence 45555554 3688999999976 135799999999999863
No 48
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.43 E-value=0.11 Score=47.35 Aligned_cols=42 Identities=33% Similarity=0.648 Sum_probs=30.3
Q ss_pred CceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEeccC
Q psy9235 114 APHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLI 176 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~i 176 (317)
|.-=.+|||.+|..|+.+|+++. +.-.||.|+.....-+|-+
T Consensus 193 g~~C~~C~~~~H~~C~~~~~~~~---------------------~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKYFQSN---------------------AEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp CEECSSSCCEECHHHHHHHTTTC---------------------SSCBCTTTCCBCCSCCCCC
T ss_pred CcccCccChHHHHHHHHHHHHhC---------------------CCCCCCCCCCCCCCCCCCC
Confidence 44444599999999999998431 2347999998765555544
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=89.52 E-value=0.18 Score=39.93 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=18.9
Q ss_pred CCceeecCCchhhHHHHHHHhhh
Q psy9235 113 PAPHTSTCGHVMHSTCWSKYFDN 135 (317)
Q Consensus 113 ~g~~vssCGH~mH~~C~~~Y~~s 135 (317)
..+++..|||..|..|+.++++.
T Consensus 34 ~~p~~~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 34 ADPVETSCKHLFCRICILRCLKV 56 (116)
T ss_dssp SSEEECTTSCEEEHHHHHHHHHH
T ss_pred cCcEEcCCCCcccHHHHHHHHhH
Confidence 34566789999999999999853
No 50
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=88.86 E-value=0.14 Score=38.08 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=24.7
Q ss_pred hccccCCCCCCC-----CCCCceeeceeCceecCC
Q psy9235 260 VSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 260 ~~~~~C~~c~~~-----~~~~P~lCL~CG~~~C~~ 289 (317)
+.+.+||.|+.+ -+..++.|+.||+++|-.
T Consensus 5 Fm~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~P 39 (66)
T 1qxf_A 5 FVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEP 39 (66)
T ss_dssp EEEEECTTTCCEEEEESSCSSCEECSSSCCEEEEC
T ss_pred eEEEECCCCCCceEEEecCceEEEcccCCCEEeec
Confidence 678899999976 134799999999999863
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=83.94 E-value=0.3 Score=40.61 Aligned_cols=33 Identities=24% Similarity=0.562 Sum_probs=26.2
Q ss_pred CCceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcc
Q psy9235 113 PAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167 (317)
Q Consensus 113 ~g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrs 167 (317)
..++...|||..+..|+.++++. +.+.||+||.
T Consensus 42 ~~pv~~~CgH~FC~~Ci~~~~~~----------------------~~~~CP~Cr~ 74 (141)
T 3knv_A 42 RRPFQAQCGHRYCSFCLASILSS----------------------GPQNCAACVH 74 (141)
T ss_dssp SSEEECTTSCEEEHHHHHHHGGG----------------------SCEECHHHHH
T ss_pred cCcEECCCCCccCHHHHHHHHhc----------------------CCCCCCCCCC
Confidence 34567799999999999999731 2358999987
No 52
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.47 E-value=0.79 Score=33.31 Aligned_cols=39 Identities=18% Similarity=0.430 Sum_probs=30.7
Q ss_pred CCceeecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEeccCCC
Q psy9235 113 PAPHTSTCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLIPA 178 (317)
Q Consensus 113 ~g~~vssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ip~ 178 (317)
..+++.-|||. +-..|.++. ..||+||.--..++.+..+
T Consensus 26 ~~~v~~pCgH~~~C~~C~~~~---------------------------~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 26 VNWVLLPCRHTCLCDGCVKYF---------------------------QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCCEETTTTBCCSCTTHHHHC---------------------------SSCTTTCCCCCCEECCCSS
T ss_pred CCEEEECCCChhhhHHHHhcC---------------------------CCCCCCCcchhceEEeecC
Confidence 34667789999 999998731 1699999999888888643
No 53
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=83.35 E-value=0.4 Score=36.93 Aligned_cols=29 Identities=17% Similarity=0.576 Sum_probs=24.3
Q ss_pred hccccCCCCCCC-----CCCCceeeceeCceecC
Q psy9235 260 VSLFTCPNSDRE-----DSRNPALCLICGDMLCS 288 (317)
Q Consensus 260 ~~~~~C~~c~~~-----~~~~P~lCL~CG~~~C~ 288 (317)
+...+||.|+.+ -...++.|+.||.++|-
T Consensus 30 Fm~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 30 FMDVKCAQCQNIQMIFSNAQSTIICEKCSAILCK 63 (81)
T ss_dssp EEEEECSSSCCEEEEETTCSSCEECSSSCCEEEE
T ss_pred EEEeECCCCCCeeEEEecCccEEEccCCCCEEee
Confidence 578899999976 13479999999999985
No 54
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=83.14 E-value=0.69 Score=35.21 Aligned_cols=37 Identities=16% Similarity=0.534 Sum_probs=27.1
Q ss_pred ecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccC--Ccccc
Q psy9235 118 STCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPL--CECLS 169 (317)
Q Consensus 118 ssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPL--CrsLs 169 (317)
..|||.--..||+.|++..... + ....+.||. |+...
T Consensus 24 ~~CgH~FC~~Cl~~~~~~~i~~--------g-------~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 24 AQCQCIFCTLCLKQYVELLIKE--------G-------LETAISCPDAACPKQG 62 (94)
T ss_dssp TTTTEEEEHHHHHHHHHHHHHH--------C-------SCCCEECSCTTCSSCC
T ss_pred CCCCCcccHHHHHHHHHHHhhc--------C-------CcccccCccccCCCCC
Confidence 3699999999999999765311 0 113679999 99763
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.70 E-value=0.68 Score=33.87 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=26.1
Q ss_pred CceeecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 114 APHTSTCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 114 g~~vssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
.+++..|||. ....|.++. ..||+||.--...+.+
T Consensus 37 ~~~~~pCgH~~~C~~C~~~~---------------------------~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 37 AIVFVPCGHLVTCKQCAEAV---------------------------DKCPMCYTVITFKQKI 72 (75)
T ss_dssp CBCCSSSCCCCBCHHHHHHC---------------------------SBCTTTCCBCCCCCBC
T ss_pred CEEEecCCCHHHHHHHhhCC---------------------------CCCccCCceecCcEEE
Confidence 4566789999 999998421 2799999877666654
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=82.05 E-value=1.1 Score=43.67 Aligned_cols=41 Identities=24% Similarity=0.699 Sum_probs=31.7
Q ss_pred CCceeecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 113 PAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 113 ~g~~vssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
..+++..|||..|..|...++++. .-.||+||.-.....++
T Consensus 343 ~~pv~lpCGH~FC~~Ci~~wl~~~----------------------~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 343 KDVKIEPCGHLMCTSCLTSWQESE----------------------GQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp CCEEEETTCCEECHHHHHHHHHHT----------------------CSBCTTTCCBCCEEEEC
T ss_pred CCeEEeCCCChhhHHHHHHHHhcC----------------------CCCCCCCCCccCCceeE
Confidence 467889999999999999887421 12799999877766554
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=81.49 E-value=0.8 Score=33.50 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCceeecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 113 PAPHTSTCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 113 ~g~~vssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
..+++..|||. ....|+.++ ..||+||.--...+.+
T Consensus 35 ~~~~~~pCgH~~~C~~C~~~~---------------------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 35 IAIVFVPCGHLVTCKQCAEAV---------------------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp CCEEEETTCCBCCCHHHHTTC---------------------------SBCTTTCCBCSEEEEC
T ss_pred CCEEEcCCCChhHHHHhhhcC---------------------------ccCCCcCcCccCcEEE
Confidence 35667789999 999996543 3799999887777665
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=81.44 E-value=0.39 Score=38.11 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=16.2
Q ss_pred Cceee-cCCchhhHHHHHHHh
Q psy9235 114 APHTS-TCGHVMHSTCWSKYF 133 (317)
Q Consensus 114 g~~vs-sCGH~mH~~C~~~Y~ 133 (317)
.+++. .|||..+..|+.+++
T Consensus 34 ~pv~~~~CgH~fC~~Ci~~~~ 54 (117)
T 1jm7_B 34 EPVCLGGCEHIFCSNCVSDCI 54 (117)
T ss_dssp SCBCCCSSSCCBCTTTGGGGT
T ss_pred CccEeCCCCCHHHHHHHHHHh
Confidence 34454 899999999998886
No 59
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=80.43 E-value=0.47 Score=36.62 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=25.3
Q ss_pred hhccccCCCCCCC-----CCCCceeeceeCceecCC
Q psy9235 259 TVSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 259 ~~~~~~C~~c~~~-----~~~~P~lCL~CG~~~C~~ 289 (317)
++...+||.|+.+ -+..++.|..||+++|--
T Consensus 31 ~Fm~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~P 66 (82)
T 3u5c_b 31 YFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTP 66 (82)
T ss_dssp CEEEEECTTSCSCEEEESBCSSCCCCSSSCCCCEEC
T ss_pred cEEEEECCCCCCeeEEEecCCeEEEccccCCEEecc
Confidence 3688899999986 134799999999999863
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=78.97 E-value=0.89 Score=44.08 Aligned_cols=38 Identities=18% Similarity=0.596 Sum_probs=27.8
Q ss_pred ecCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCcc
Q psy9235 118 STCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCEC 167 (317)
Q Consensus 118 ssCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrs 167 (317)
..|||..|..|+.+++++.... |. +|+ .--=.||+||.
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~s--------Rq--SFn--vi~G~CPyCr~ 369 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDG--------KT--FLE--VSFGQCPFCKA 369 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSS--------SC--TTT--CCEEECTTTCC
T ss_pred CccCCccchHHHHHHHHhCCCc--------cc--ccc--ccCCCCCCCCC
Confidence 4899999999999999887422 21 233 23448999997
No 61
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.54 E-value=0.55 Score=36.56 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.9
Q ss_pred hccccCCCCCCC-----CCCCceeeceeCceecCC
Q psy9235 260 VSLFTCPNSDRE-----DSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 260 ~~~~~C~~c~~~-----~~~~P~lCL~CG~~~C~~ 289 (317)
+...+||.|+.+ -+..++.|..||+++|--
T Consensus 34 Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EEEEECTTTCCEEEEETTCSSCCCCSSSCCCCSCC
T ss_pred EeEEECCCCCCeeEEEecCCcEEEccCCCCEeecC
Confidence 678899999976 234799999999999863
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=78.23 E-value=1.1 Score=37.60 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.5
Q ss_pred CceeecCCchhhHHHHHHHhhh
Q psy9235 114 APHTSTCGHVMHSTCWSKYFDN 135 (317)
Q Consensus 114 g~~vssCGH~mH~~C~~~Y~~s 135 (317)
.++...|||.....|+.++++.
T Consensus 30 ~pv~~~CgH~fC~~Ci~~~~~~ 51 (170)
T 3hcs_A 30 EAVQTPCGHRFCKACIIKSIRD 51 (170)
T ss_dssp SEEECTTSCEEEHHHHHHHHHH
T ss_pred CcEECCCCCHHHHHHHHHHHHh
Confidence 4566789999999999999853
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=74.84 E-value=1.4 Score=31.36 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=11.7
Q ss_pred hhhHHHHHHHhhh
Q psy9235 123 VMHSTCWSKYFDN 135 (317)
Q Consensus 123 ~mH~~C~~~Y~~s 135 (317)
++|.+|+++.+..
T Consensus 32 ~~H~~Cl~~W~~~ 44 (60)
T 1vyx_A 32 NVHRSCLSTWLTI 44 (60)
T ss_dssp SCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 8999999999854
No 64
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=74.31 E-value=1 Score=34.69 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=32.0
Q ss_pred hhHHHH-HHhhccccCCCCCCCCCCCce----eeceeCceecCCCccc
Q psy9235 251 DDYSEL-INTVSLFTCPNSDREDSRNPA----LCLICGDMLCSQSYCC 293 (317)
Q Consensus 251 ~~y~~L-~~~~~~~~C~~c~~~~~~~P~----lCL~CG~~~C~~~~CC 293 (317)
+.+.++ +.+..+.+||.||...-.+|+ -|-.||..+-..+|=-
T Consensus 15 k~vk~ie~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 15 RRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKP 62 (83)
T ss_dssp HHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSS
T ss_pred HHHHHHHHhccccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecc
Confidence 456666 778899999999986444554 4889998888776643
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=71.03 E-value=2.5 Score=30.04 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred cCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 119 TCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 119 sCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
-|||. +=..|..++.+. .-.||+||+--..+|++
T Consensus 27 pCgH~~~C~~C~~~~~~~-----------------------~~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKR-----------------------NKPCPVCRQPIQMIVLT 61 (64)
T ss_dssp TEEEEEECHHHHHHHHHT-----------------------TCCCTTTCCCCCEEEEE
T ss_pred CCCChhhHHHHHHHHHHc-----------------------CCcCCCcCcchhceEee
Confidence 79999 458999887521 11699999988888776
No 66
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=70.54 E-value=2.6 Score=29.83 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=26.9
Q ss_pred ecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 118 STCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 118 ssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
.-|||. +=..|..+..+. ...||+||+--..+|.+
T Consensus 25 ~pCgH~~~C~~C~~~~~~~-----------------------~~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKA-----------------------GASCPICKKEIQLVIKV 60 (63)
T ss_dssp TTEEEEEECHHHHHHHHHT-----------------------TCBCTTTCCBCCEEEEE
T ss_pred cCCCCHhHHHHHHHHHHHh-----------------------CCcCCCcCchhhceEEE
Confidence 489998 889999876421 13799999988777765
No 67
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=68.76 E-value=2.8 Score=32.68 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred CCCCceeecCCchhhHHHHHHHh
Q psy9235 111 QGPAPHTSTCGHVMHSTCWSKYF 133 (317)
Q Consensus 111 ~~~g~~vssCGH~mH~~C~~~Y~ 133 (317)
....+++..|||..-..|..+|+
T Consensus 38 ~m~dPV~~~cGhtf~r~~I~~~l 60 (100)
T 2kre_A 38 LMTDPVRLPSGTIMDRSIILRHL 60 (100)
T ss_dssp BCSSEEEETTTEEEEHHHHHHHT
T ss_pred cccCCeECCCCCEEchHHHHHHH
Confidence 34567888899999999999997
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.11 E-value=4.8 Score=30.65 Aligned_cols=39 Identities=21% Similarity=0.499 Sum_probs=28.8
Q ss_pred CCCceeec-CCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccC--Ccc
Q psy9235 112 GPAPHTST-CGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPL--CEC 167 (317)
Q Consensus 112 ~~g~~vss-CGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPL--Crs 167 (317)
..-+++.. |||..-..|..+|+..... ..+.+.||+ |+.
T Consensus 17 ~~dPV~~~~cGh~f~r~cI~~~l~~~~~-----------------~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 17 MKKPVKNKVCGHTYEEDAIVRMIESRQK-----------------RKKKAYCPQIGCSH 58 (94)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHHHHHHT-----------------TTCCBCCCSTTCCC
T ss_pred hcCCEEcCCCCCeecHHHHHHHHHHccC-----------------cCCCCCCCcCcCcc
Confidence 34678884 9999999999999865310 124678999 973
No 69
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=67.91 E-value=2.6 Score=33.88 Aligned_cols=27 Identities=19% Similarity=0.501 Sum_probs=22.7
Q ss_pred cccCCCCCCCCCCCceeeceeCceecCCC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCSQS 290 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~~~ 290 (317)
..+|..|+.. .+.-+||.||.+.|..+
T Consensus 24 ~~~C~~C~~~--~~~W~CL~CG~vgCgr~ 50 (109)
T 3c5k_A 24 TQPCGDCGTI--QENWVCLSCYQVYCGRY 50 (109)
T ss_dssp TCCCTTTCCC--SSEEEETTTCCEEECTT
T ss_pred CCcCccccCC--CCeeeeeecCccccCCC
Confidence 4679999987 46789999999999865
No 70
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.76 E-value=0.76 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.3
Q ss_pred ceeecCCchhhHHHHHH
Q psy9235 115 PHTSTCGHVMHSTCWSK 131 (317)
Q Consensus 115 ~~vssCGH~mH~~C~~~ 131 (317)
+++..|||..+..|+.+
T Consensus 19 p~~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 19 PKLLPCLHTLCSGCLEA 35 (56)
T ss_dssp CSCSTTSCCSBTTTCSS
T ss_pred eEEcCCCCcccHHHHcc
Confidence 45667999999999654
No 71
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=67.17 E-value=3.9 Score=30.31 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=29.0
Q ss_pred CCceeecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEeccC
Q psy9235 113 PAPHTSTCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPLI 176 (317)
Q Consensus 113 ~g~~vssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~i 176 (317)
..+++.-|||. .=..|..++ ..||+||.-...++.+.
T Consensus 29 ~~~v~~pCgH~~~C~~C~~~~---------------------------~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 29 INSTFCPCGHTVCCESCAAQL---------------------------QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp CCEEEETTCBCCBCHHHHTTC---------------------------SBCTTTCCBCCEEEECB
T ss_pred CcEEEECCCCHHHHHHHHHhc---------------------------CcCCCCCchhhCeEEEE
Confidence 45677789999 678887533 18999999999888875
No 72
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=62.31 E-value=4.2 Score=30.50 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.5
Q ss_pred CCCCceeecCCchhhHHHHHHHhh
Q psy9235 111 QGPAPHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 111 ~~~g~~vssCGH~mH~~C~~~Y~~ 134 (317)
....+++..|||..-..|..+|+.
T Consensus 23 ~m~dPV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 23 LMTDPVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp BCSSEEECTTSCEEEHHHHHHHHH
T ss_pred hhcCCeECCCCCEECHHHHHHHHh
Confidence 345678888999999999999984
No 73
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=62.27 E-value=4.6 Score=29.68 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=21.9
Q ss_pred cccCCCCCCCCCCCceeeceeCceecCC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
..+|..|++.+.-.+.-| .||.++|++
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSS
T ss_pred CCcChhhCCcccccCeEe-ecCCEeccc
Confidence 457999998645457899 899999994
No 74
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=62.07 E-value=4.4 Score=31.41 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=19.9
Q ss_pred CCCCceeecCC-chhhHHHHHHHhh
Q psy9235 111 QGPAPHTSTCG-HVMHSTCWSKYFD 134 (317)
Q Consensus 111 ~~~g~~vssCG-H~mH~~C~~~Y~~ 134 (317)
...-+++..|| |..-..|..+|+.
T Consensus 31 ~m~dPV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 31 LMCDPVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp BCSSEEECTTTCCEEEHHHHHHHTT
T ss_pred cccCCeECCCCCeEECHHHHHHHHH
Confidence 33567888899 9999999999973
No 75
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.36 E-value=6.2 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.520 Sum_probs=21.9
Q ss_pred cccCCCCCCCCCCCceeeceeCceecCC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
..+|..|++.+.-.+.-| -||.++|+.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEECTT
T ss_pred CCcChhhCCccCccCEEe-ecCCEeccc
Confidence 467999998645457899 799999995
No 76
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=58.47 E-value=3 Score=26.89 Aligned_cols=8 Identities=50% Similarity=1.497 Sum_probs=7.0
Q ss_pred eeeccCCc
Q psy9235 159 EFLCPLCE 166 (317)
Q Consensus 159 EFlCPLCr 166 (317)
-|+||+|+
T Consensus 5 GFiCP~C~ 12 (34)
T 3mjh_B 5 GFICPQCM 12 (34)
T ss_dssp EEECTTTC
T ss_pred ccCCcHHH
Confidence 49999995
No 77
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=57.23 E-value=5.3 Score=33.00 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCCCceeeceeCceecCCC
Q psy9235 263 FTCPNSDREDSRNPALCLICGDMLCSQS 290 (317)
Q Consensus 263 ~~C~~c~~~~~~~P~lCL~CG~~~C~~~ 290 (317)
.+|..|+.. .+.-|||.||.+-|...
T Consensus 35 ~~C~~C~~~--~~LwlCL~CG~vgCgr~ 60 (129)
T 2g45_A 35 WKCSKCDMR--ENLWLNLTDGSILCGRR 60 (129)
T ss_dssp CCCSSSSCC--SSEEEETTTCCEEECCB
T ss_pred CcCccccCc--CceEEeccCCccccCcc
Confidence 579999986 48899999999998754
No 78
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=55.68 E-value=4.6 Score=35.66 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.3
Q ss_pred CCCCCceeecCCchhhHHHHHHHhh
Q psy9235 110 HQGPAPHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 110 ~~~~g~~vssCGH~mH~~C~~~Y~~ 134 (317)
.....+++..|||..--.|..+|+.
T Consensus 216 ~~~~dPv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 216 ELMREPCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp SBCSSEEECSSCCEEETTHHHHHHH
T ss_pred CHhcCCeECCCCCEECHHHHHHHHH
Confidence 3456788999999999999999984
No 79
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=54.66 E-value=7.3 Score=29.40 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=22.9
Q ss_pred ccccCCCCCCCCCCCceeeceeCceecCC
Q psy9235 261 SLFTCPNSDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 261 ~~~~C~~c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
...+|..|++.+.-.+.-| .||.++|+.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTT
T ss_pred cCccchhhcCcccccceEe-ccCCEeccc
Confidence 3468999997756568999 799999994
No 80
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=51.67 E-value=13 Score=28.91 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=22.5
Q ss_pred ccccCCCCCCCCCCCceeece--eCceecCC
Q psy9235 261 SLFTCPNSDREDSRNPALCLI--CGDMLCSQ 289 (317)
Q Consensus 261 ~~~~C~~c~~~~~~~P~lCL~--CG~~~C~~ 289 (317)
...+|..|++. ..+.-+||. ||.+.|..
T Consensus 24 ~~~~C~~C~~~-~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQ-GPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCC-CSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCC-CCCceeeecccCCCcccCC
Confidence 45689999965 346689999 99999875
No 81
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=50.24 E-value=3.7 Score=27.86 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=17.9
Q ss_pred cccCCCCCC-C---CC-CCceeeceeCceec
Q psy9235 262 LFTCPNSDR-E---DS-RNPALCLICGDMLC 287 (317)
Q Consensus 262 ~~~C~~c~~-~---~~-~~P~lCL~CG~~~C 287 (317)
..+||.|+. . ++ +.-.+|-.||.++=
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 467999987 2 12 23578999988763
No 82
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.09 E-value=5.5 Score=37.96 Aligned_cols=33 Identities=24% Similarity=0.664 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCC--CCceeeceeCceecCCCccccc
Q psy9235 261 SLFTCPNSDREDS--RNPALCLICGDMLCSQSYCCQT 295 (317)
Q Consensus 261 ~~~~C~~c~~~~~--~~P~lCL~CG~~~C~~~~CC~~ 295 (317)
....|..|+..-. ..---|-.||.++|.. |+..
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~--Cs~~ 408 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRN--CSRN 408 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehh--hCCC
Confidence 3456999987522 2457899999999986 7754
No 83
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=43.29 E-value=13 Score=26.39 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=16.9
Q ss_pred ccCCCCCCC----CC-CCceeeceeCcee
Q psy9235 263 FTCPNSDRE----DS-RNPALCLICGDML 286 (317)
Q Consensus 263 ~~C~~c~~~----~~-~~P~lCL~CG~~~ 286 (317)
.+||.|+.. +. .--.+|..||.++
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 479999873 11 2468888888776
No 84
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.69 E-value=11 Score=28.41 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=22.1
Q ss_pred cccCCCCCCCCCCCceeeceeCceecCC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
..+|..|++-+.-.+.-|- ||.++|+.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechh
Confidence 4579999986455689999 99999994
No 85
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=40.98 E-value=6.8 Score=29.66 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHHHHHHHHHhhhhccCCcccCCCCCCcccc
Q psy9235 197 MDFDAWLSIVEMVLEHKKRLKKSKATSECQDSTSSKQVPQ 236 (317)
Q Consensus 197 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~v~~ 236 (317)
..||+.|....|.-++ .+....+.|+|++.+..++.
T Consensus 16 ~~lD~~ia~~pmP~~y----~~~~v~I~CnDC~~~s~v~~ 51 (79)
T 2k2d_A 16 RQLDDEVAQTPMPSEY----QNMTVDILCNDCNGRSTVQF 51 (79)
T ss_dssp ---------------------CCEEEEEESSSCCEEEEEC
T ss_pred HHHHHHHHhCCCCHHH----hCCEeEEECCCCCCCccCCc
Confidence 4566666666666666 55677899999999988775
No 86
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.97 E-value=11 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.783 Sum_probs=17.3
Q ss_pred ccccCCCCCCC-CCCCceeeceeCc
Q psy9235 261 SLFTCPNSDRE-DSRNPALCLICGD 284 (317)
Q Consensus 261 ~~~~C~~c~~~-~~~~P~lCL~CG~ 284 (317)
...+|++||-+ +++.|..|.+||.
T Consensus 137 ~~~~C~~CG~i~~~~~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVDEAPEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEESCCCSBCTTTCC
T ss_pred CeeEeCCCCCeeCCCCCCCCCCCCC
Confidence 34569999965 3456778999985
No 87
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=38.90 E-value=10 Score=36.04 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=28.4
Q ss_pred CCceeecCCch-hhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccCCccccceEecc
Q psy9235 113 PAPHTSTCGHV-MHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALPL 175 (317)
Q Consensus 113 ~g~~vssCGH~-mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPLCrsLsN~vLP~ 175 (317)
..+++..|||. ....|..+. ..||+||.--...+.+
T Consensus 306 ~~~v~lpCgH~~fC~~C~~~~---------------------------~~CP~CR~~i~~~~~i 342 (345)
T 3t6p_A 306 VSVVFIPCGHLVVCQECAPSL---------------------------RKCPICRGIIKGTVRT 342 (345)
T ss_dssp CCEEEETTCCEEECTTTGGGC---------------------------SBCTTTCCBCCEEEEC
T ss_pred CceEEcCCCChhHhHHHHhcC---------------------------CcCCCCCCCccCeEEe
Confidence 46677799999 999997633 2799999988777655
No 88
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.18 E-value=10 Score=28.18 Aligned_cols=27 Identities=19% Similarity=0.546 Sum_probs=20.3
Q ss_pred ccccCCCCCCC---CCCCceeeceeCc-eec
Q psy9235 261 SLFTCPNSDRE---DSRNPALCLICGD-MLC 287 (317)
Q Consensus 261 ~~~~C~~c~~~---~~~~P~lCL~CG~-~~C 287 (317)
....|+.||.+ ...|+.-|--||. |+-
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 45679999976 3357888999998 653
No 89
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.46 E-value=14 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=22.3
Q ss_pred ccccCCCCCCCCCC----Cceeece--eCceecCC
Q psy9235 261 SLFTCPNSDREDSR----NPALCLI--CGDMLCSQ 289 (317)
Q Consensus 261 ~~~~C~~c~~~~~~----~P~lCL~--CG~~~C~~ 289 (317)
..++||+|+..+-+ +-+.|.. ||..+|-.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~ 39 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWV 39 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSS
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeC
Confidence 45789999977655 5778888 88888853
No 90
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=36.18 E-value=7.7 Score=30.86 Aligned_cols=29 Identities=21% Similarity=0.548 Sum_probs=20.8
Q ss_pred cccCCCCCCCCCC--CceeeceeCceecCCC
Q psy9235 262 LFTCPNSDREDSR--NPALCLICGDMLCSQS 290 (317)
Q Consensus 262 ~~~C~~c~~~~~~--~P~lCL~CG~~~C~~~ 290 (317)
..+|..|+..... .=-|||.||.+-|..+
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~ 48 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDD 48 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCC
Confidence 5779999887321 3348999999988543
No 91
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.99 E-value=21 Score=27.52 Aligned_cols=28 Identities=18% Similarity=0.505 Sum_probs=22.4
Q ss_pred ccccCCCCCCCCCC-CceeeceeCceecCC
Q psy9235 261 SLFTCPNSDREDSR-NPALCLICGDMLCSQ 289 (317)
Q Consensus 261 ~~~~C~~c~~~~~~-~P~lCL~CG~~~C~~ 289 (317)
...+|..|++.+.- .+.-|- ||.++|+.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTT
T ss_pred cCccchhhCCeecccCCeEcC-CCCEeccc
Confidence 44689999986553 389996 99999994
No 92
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=35.67 E-value=16 Score=27.75 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=23.4
Q ss_pred ccccCCCCCCCCCCCceeeceeCceecC
Q psy9235 261 SLFTCPNSDREDSRNPALCLICGDMLCS 288 (317)
Q Consensus 261 ~~~~C~~c~~~~~~~P~lCL~CG~~~C~ 288 (317)
....|+-|-.. ..+|++|+-||-++|.
T Consensus 21 ~~~~C~IC~~~-~~~p~~~~~CgH~FC~ 47 (100)
T 3lrq_A 21 EVFRCFICMEK-LRDARLCPHCSKLCCF 47 (100)
T ss_dssp HHTBCTTTCSB-CSSEEECTTTCCEEEH
T ss_pred CCCCCccCCcc-ccCccccCCCCChhhH
Confidence 34569999998 6799999999999996
No 93
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=35.09 E-value=8.9 Score=31.40 Aligned_cols=28 Identities=25% Similarity=0.656 Sum_probs=20.7
Q ss_pred ccCCCCCCC------------CCCCceeeceeCceecCCC
Q psy9235 263 FTCPNSDRE------------DSRNPALCLICGDMLCSQS 290 (317)
Q Consensus 263 ~~C~~c~~~------------~~~~P~lCL~CG~~~C~~~ 290 (317)
.+|..|.+. ...+.-|||.||.+.|..+
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~ 68 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRN 68 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTT
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCCC
Confidence 457777653 1357799999999999764
No 94
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.54 E-value=14 Score=27.29 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=20.8
Q ss_pred cccCCCCCCCCCCCc----eeeceeCceecCC
Q psy9235 262 LFTCPNSDREDSRNP----ALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P----~lCL~CG~~~C~~ 289 (317)
..+|..|++.+. -+ ..| .||.++|+.
T Consensus 15 ~~rC~~C~kk~g-L~~~egf~C-rCg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLE-LVQQELGSC-RCGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCC-HHHHHHHCC-SSSCCCCTT
T ss_pred CCcchhhCCeec-ccccCceEe-cCCCEehhc
Confidence 357999998855 55 589 999999994
No 95
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=28.69 E-value=22 Score=31.14 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=16.0
Q ss_pred ccccCCCCCCC-CCCCceeeceeCc
Q psy9235 261 SLFTCPNSDRE-DSRNPALCLICGD 284 (317)
Q Consensus 261 ~~~~C~~c~~~-~~~~P~lCL~CG~ 284 (317)
...+|+.||-+ +...|-.|-+||.
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFR 194 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCC
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCC
Confidence 35678888865 3345667777775
No 96
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.54 E-value=26 Score=29.54 Aligned_cols=76 Identities=13% Similarity=0.133 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHHHHHHH---HHhhhhccCCcccCCCCCCcccccCCccccccccCCChhHHHHHHhhcc--ccCCCCCCC
Q psy9235 197 MDFDAWLSIVEMVLEHK---KRLKKSKATSECQDSTSSKQVPQDRKPLEINRLINLPDDYSELINTVSL--FTCPNSDRE 271 (317)
Q Consensus 197 ~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~v~~~~~p~~~~~l~~LP~~y~~L~~~~~~--~~C~~c~~~ 271 (317)
.||.+.-+.|...-++. -+.+.-+.++.-+ ..--+-+- .-++.++++++.|.. ..|+.|+..
T Consensus 47 ~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~---~rlii~G~----------~~~~~i~~~L~~yI~~yVlC~~C~sP 113 (148)
T 2d74_B 47 ENFKDIADALNRDPQHLLKFLLREIATAGTLEG---RRVVLQGR----------FTPYLIANKLKKYIKEYVICPVCGSP 113 (148)
T ss_dssp SCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEET---TEEEESSC----------CCHHHHHHHHHHHHHHHSSCSSSCCT
T ss_pred EcHHHHHHHHCCCHHHHHHHHHHHhCCceeecC---CEEEEEee----------eCHHHHHHHHHHHHHHEEECCCCCCc
Confidence 67777555555443443 2224444444431 12223332 235678888888877 789999986
Q ss_pred CCC----C---ceeeceeCce
Q psy9235 272 DSR----N---PALCLICGDM 285 (317)
Q Consensus 272 ~~~----~---P~lCL~CG~~ 285 (317)
+++ + -.-|.-||..
T Consensus 114 dT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 114 DTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp TCCCCBSSSSBCCCCSSSCCC
T ss_pred CcEEEEeCCEEEEEecCCCCC
Confidence 543 2 2345566653
No 97
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=28.33 E-value=20 Score=26.61 Aligned_cols=25 Identities=24% Similarity=0.739 Sum_probs=18.7
Q ss_pred hccccCCCCCCC----CCCCceeeceeCcee
Q psy9235 260 VSLFTCPNSDRE----DSRNPALCLICGDML 286 (317)
Q Consensus 260 ~~~~~C~~c~~~----~~~~P~lCL~CG~~~ 286 (317)
|.-.+|| |+.. ....-..|- ||+.+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTV 30 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCee
Confidence 6678899 9965 234678997 99875
No 98
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.80 E-value=16 Score=26.30 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=16.6
Q ss_pred ccccCCCCCCCCCCCceeeceeCc
Q psy9235 261 SLFTCPNSDREDSRNPALCLICGD 284 (317)
Q Consensus 261 ~~~~C~~c~~~~~~~P~lCL~CG~ 284 (317)
....||+||+. -.--.+|..||.
T Consensus 29 ~l~~c~~cGe~-~~~H~vc~~CG~ 51 (60)
T 3v2d_5 29 TLVPCPECKAM-KPPHTVCPECGY 51 (60)
T ss_dssp CCEECTTTCCE-ECTTSCCTTTCE
T ss_pred ceeECCCCCCe-ecceEEcCCCCc
Confidence 35569999987 324477999984
No 99
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.39 E-value=37 Score=31.33 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.9
Q ss_pred CCCCceee-cCCchhhHHHHHHHhhhhhhhccCCccccCCCCccCCCCCeeeccC--Ccc
Q psy9235 111 QGPAPHTS-TCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPL--CEC 167 (317)
Q Consensus 111 ~~~g~~vs-sCGH~mH~~C~~~Y~~s~~~~e~rr~q~~R~~~~~d~~~~EFlCPL--Crs 167 (317)
...-++++ .|||.-=-.|+.+|++. .+.+.||. |+.
T Consensus 190 ~f~DPVts~~CGHsFcR~cI~~~~~~---------------------~~~~~CPvtGCr~ 228 (267)
T 3htk_C 190 PYEAPLISRKCNHVFDRDGIQNYLQG---------------------YTTRDCPQAACSQ 228 (267)
T ss_dssp BCSSEEEESSSCCEEEHHHHHHHSTT---------------------CSCEECSGGGCSC
T ss_pred cccCCeeeCCCCCcccHHHHHHHHHh---------------------CCCCCCCcccccC
Confidence 34567776 89999999999999731 13579999 987
No 100
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.05 E-value=18 Score=25.99 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=17.6
Q ss_pred ccccCCCCCCCCCCCceeeceeCce
Q psy9235 261 SLFTCPNSDREDSRNPALCLICGDM 285 (317)
Q Consensus 261 ~~~~C~~c~~~~~~~P~lCL~CG~~ 285 (317)
....||+||+. -.--.+|..||..
T Consensus 29 ~l~~c~~cG~~-~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 29 NLTECPQCHGK-KLSHHICPNCGYY 52 (60)
T ss_dssp CCEECTTTCCE-ECTTBCCTTTCBS
T ss_pred CceECCCCCCE-eCCceEcCCCCcC
Confidence 45679999987 3344899999953
No 101
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=25.02 E-value=29 Score=28.93 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=45.1
Q ss_pred ccCHHHHHHHHHHHHHHH---HHhhhhccCCcccCCCCCCcccccCCccccccccCCChhHHHHHHhhcc--ccCCCCCC
Q psy9235 196 HMDFDAWLSIVEMVLEHK---KRLKKSKATSECQDSTSSKQVPQDRKPLEINRLINLPDDYSELINTVSL--FTCPNSDR 270 (317)
Q Consensus 196 ~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~v~~~~~p~~~~~l~~LP~~y~~L~~~~~~--~~C~~c~~ 270 (317)
-.||.+.-+.|...-+|. -+.+.-+.++.- +..--+-+ -.-++.++++++.|.. ..|+.|+.
T Consensus 44 i~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id---~~rlii~G----------~~~~~~i~~~L~~yI~~yVlC~~C~s 110 (138)
T 1nee_A 44 IQNFREVADALNRDPQHLLKFLLRELGTAGNLE---GGRAILQG----------KFTHFLINERIEDYVNKFVICHECNR 110 (138)
T ss_dssp ESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB---TTTEEEES----------SCSSSHHHHHHHHHHTHHHHHTCCSS
T ss_pred EEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec---CCEEEEEe----------eeCHHHHHHHHHHHHhhEEECCCCCC
Confidence 367777666665555554 222444554443 11222333 2235779999999888 68999998
Q ss_pred CCCC-------CceeeceeCce
Q psy9235 271 EDSR-------NPALCLICGDM 285 (317)
Q Consensus 271 ~~~~-------~P~lCL~CG~~ 285 (317)
-++. .-.-|.-||..
T Consensus 111 PdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 111 PDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp CSSCCEEETTTTEEECSTTSCC
T ss_pred cCcEEEEcCCeEEEEccCCCCC
Confidence 7553 23446666653
No 102
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=24.10 E-value=72 Score=33.73 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=21.7
Q ss_pred cccCCCCCCCCCCCceeeceeCceecC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCS 288 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~ 288 (317)
..+|..|+.. .+.-+||.||.+.|.
T Consensus 215 ~~~C~~c~~~--~~lw~CL~Cg~vgC~ 239 (854)
T 3ihp_A 215 GWKCSKCDMR--ENLWLNLTDGSILCG 239 (854)
T ss_dssp CCCCSSSCCC--SSEEEETTTCCEEEC
T ss_pred CCcCcCcCCc--CceEEEecCCCcccc
Confidence 4789999986 488999999999886
No 103
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=24.09 E-value=36 Score=32.61 Aligned_cols=28 Identities=25% Similarity=0.518 Sum_probs=21.0
Q ss_pred cccCCCCCCCCCCCceeeceeCceecCC
Q psy9235 262 LFTCPNSDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
..+|..|+..-....-+||.||.+-|..
T Consensus 48 ~~~C~~c~~~~~~~~~~cl~cg~~~c~~ 75 (476)
T 3mhs_A 48 TMKCGTCHEINSGATFMCLQCGFCGCWN 75 (476)
T ss_dssp HSBCTTTCCBCSSSEEEESSSSCEEETT
T ss_pred CCCcccccCCCCCCceEeCCCCCCccCC
Confidence 3569999876224778999999888763
No 104
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=24.02 E-value=40 Score=29.05 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=20.7
Q ss_pred CCCCceeecCCchhhHHHHHHHhh
Q psy9235 111 QGPAPHTSTCGHVMHSTCWSKYFD 134 (317)
Q Consensus 111 ~~~g~~vssCGH~mH~~C~~~Y~~ 134 (317)
...-+++..|||..=-.|..+|+.
T Consensus 115 lm~DPV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 115 LMREPCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp BCSSEEECTTSCEEEHHHHHHHHH
T ss_pred cCCCCeECCCCCEECHHHHHHHHH
Confidence 445788889999999999999984
No 105
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.01 E-value=46 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=22.2
Q ss_pred cccCCC--CCCCCCCCceeeceeCceecCC
Q psy9235 262 LFTCPN--SDREDSRNPALCLICGDMLCSQ 289 (317)
Q Consensus 262 ~~~C~~--c~~~~~~~P~lCL~CG~~~C~~ 289 (317)
..+|.. |++.+- .|..|-.||.++|+.
T Consensus 14 g~~Cs~~~C~~~df-lpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 14 GQHCQVQHCRQRDF-LPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCSCTTTCCCSC-CCEECTTTCCEECST
T ss_pred CCCcCcccCCCccc-eeeECcccCcCcCcc
Confidence 457866 998754 799999999999993
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=54 Score=24.39 Aligned_cols=32 Identities=25% Similarity=0.690 Sum_probs=23.4
Q ss_pred cccCCCCCCCC--CCCceeeceeCceecCCCccccc
Q psy9235 262 LFTCPNSDRED--SRNPALCLICGDMLCSQSYCCQT 295 (317)
Q Consensus 262 ~~~C~~c~~~~--~~~P~lCL~CG~~~C~~~~CC~~ 295 (317)
...|..|++.- .+.---|-.||.|+|.. |+..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~--Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSR--CCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTT--TSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChh--hcCC
Confidence 34688888752 24567899999999996 6653
No 107
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.71 E-value=49 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.622 Sum_probs=24.4
Q ss_pred ccCCCCCCCC--CCCceeeceeCceecCCCccccc
Q psy9235 263 FTCPNSDRED--SRNPALCLICGDMLCSQSYCCQT 295 (317)
Q Consensus 263 ~~C~~c~~~~--~~~P~lCL~CG~~~C~~~~CC~~ 295 (317)
..|..|++.- .+..--|-.||.++|+. |+..
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~--Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQ--CTAK 194 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECST--TSCE
T ss_pred CccCCCCCccCCcccccccCCcCCEEChH--HhCC
Confidence 5799999763 24567899999999996 7764
No 108
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.62 E-value=37 Score=31.81 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCC---CC----ceeeceeCceec
Q psy9235 261 SLFTCPNSDREDS---RN----PALCLICGDMLC 287 (317)
Q Consensus 261 ~~~~C~~c~~~~~---~~----P~lCL~CG~~~C 287 (317)
...+||.||...| .| -.+|--||.++=
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 3567999998411 23 458999998873
No 109
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=40 Score=28.71 Aligned_cols=24 Identities=8% Similarity=0.479 Sum_probs=19.3
Q ss_pred ChhHHHHHHhhcc--ccCCCCCCCCC
Q psy9235 250 PDDYSELINTVSL--FTCPNSDREDS 273 (317)
Q Consensus 250 P~~y~~L~~~~~~--~~C~~c~~~~~ 273 (317)
++.++++++.|.. ..|+.|+.-++
T Consensus 89 ~~~i~~~L~~yI~~YVlC~~C~sPdT 114 (157)
T 2e9h_A 89 ANKLQDMLDGFIKKFVLCPECENPET 114 (157)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCCSCC
T ss_pred HHHHHHHHHHHHHHeEECCCCCCCcc
Confidence 5778888888877 78999997644
No 110
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.73 E-value=43 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.619 Sum_probs=18.3
Q ss_pred hccccCCCCCCCC---CCCceeeceeCc
Q psy9235 260 VSLFTCPNSDRED---SRNPALCLICGD 284 (317)
Q Consensus 260 ~~~~~C~~c~~~~---~~~P~lCL~CG~ 284 (317)
-....|..||.+. +.++.-|-.||-
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCc
Confidence 3567799999763 347888888884
No 111
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.38 E-value=43 Score=24.27 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=22.6
Q ss_pred cCCCCCCCC--CCCceeeceeCceecCCCccccc
Q psy9235 264 TCPNSDRED--SRNPALCLICGDMLCSQSYCCQT 295 (317)
Q Consensus 264 ~C~~c~~~~--~~~P~lCL~CG~~~C~~~~CC~~ 295 (317)
.|..|++.- .+..--|-.||.++|+. |+..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~--Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQE--HSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGG--GSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEccc--ccCC
Confidence 688888752 23567899999999987 6643
No 112
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.09 E-value=66 Score=23.98 Aligned_cols=40 Identities=15% Similarity=0.350 Sum_probs=25.1
Q ss_pred hhHHHH-HHhhccccCCCCCCCCCCCc----eeeceeCceecCCC
Q psy9235 251 DDYSEL-INTVSLFTCPNSDREDSRNP----ALCLICGDMLCSQS 290 (317)
Q Consensus 251 ~~y~~L-~~~~~~~~C~~c~~~~~~~P----~lCL~CG~~~C~~~ 290 (317)
+.+.++ +.+..+..||-||+..-+.- -.|--||..+=..+
T Consensus 15 K~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGA 59 (73)
T 1ffk_W 15 VRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGA 59 (73)
T ss_pred HHHHHHHHhcccCccCCCCCCceeEEEEeEEEECCCCCcEEECCC
Confidence 556777 78899999999998622111 12555555554443
Done!