RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9235
         (317 letters)



>gnl|CDD|165420 PHA03149, PHA03149, hypothetical protein; Provisional.
          Length = 66

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 240 PLEIN-RLINLPDDYSELINTVSLFTCPN 267
           PL+   ++INLPDD+ EL  T  +  CP+
Sbjct: 14  PLDTEGKVINLPDDFEELSETEIMLACPH 42


>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
          Length = 392

 Score = 28.4 bits (64), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 171 AALPLIPALSSIQTTTPTENAEVFVHMDFDAW 202
           A LPL   LSS+  T P +  E  + +D +A+
Sbjct: 212 ALLPLNGHLSSLVLTLPPDQIEALLALDPEAF 243


>gnl|CDD|214546 smart00184, RING, Ring finger.  E3 ubiquitin-protein ligase
           activity is intrinsic to the RING domain of c-Cbl and is
           likely to be a general function of this domain; Various
           RING fingers exhibit binding activity towards E2
           ubiquitin-conjugating enzymes (Ubc' s).
          Length = 40

 Score = 24.8 bits (54), Expect = 9.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 106 ISLEHQGPAPHTSTCGHVMHSTCWSKYFDN 135
           I LE     P    CGH    +C  K+ ++
Sbjct: 3   ICLEEYLKDPVILPCGHTFCRSCIRKWLES 32


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,075,000
Number of extensions: 1332399
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 11
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)