RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9235
(317 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 5e-07
Identities = 61/357 (17%), Positives = 106/357 (29%), Gaps = 130/357 (36%)
Query: 7 SFMKENAQLFEANATIKLEEEEPESSCMDVVEHPVAL-GPNQTPRPN---TGPV------ 56
+K +A+ L+ E+ + ++++E L P+ TP + + P+
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPDKDYLLSIPISCPLIG 242
Query: 57 ------YY-TCI--------LCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKV 101
Y T L + T + LV A + ++ F V
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD--------SWESFFV 294
Query: 102 NSL-------YISLEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFD 154
+ +I + P+TS ++ D++ E P+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILE--------DSLENNEG-------VPS--- 336
Query: 155 IEKNEFLCPLCECLSNAALPLIPALSSIQTTTPTENAEVFVHMDFDAWLSIV------EM 208
P+ LS + L + T N+ H+ + I +
Sbjct: 337 --------PM---LSISNLTQEQVQDYVNKT----NS----HLPAGKQVEISLVNGAKNL 377
Query: 209 V-------LEH-KKRLKKSKATSECQDSTSSKQVP-QDRKPLEINR-L-INLP------D 251
V L L+K+KA S S ++P +RK NR L + P
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQS----RIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 252 DYSELI------NTVSL----FTCP------NSD-REDSRN--PALCLICGDMLCSQ 289
S+LI N VS P SD R S + + D +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV----DCIIRL 486
Score = 38.1 bits (88), Expect = 0.003
Identities = 36/214 (16%), Positives = 60/214 (28%), Gaps = 72/214 (33%)
Query: 7 SFMKENAQLFEANATIKLEE------EEPESSCM---DVVEHPVA---LGPNQTPRPNTG 54
F+ + L E + + ++ E E+ + D+ H +A L N T T
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTK 120
Query: 55 PV---YYTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKVNSLYISLEHQ 111
+ Y T + + K N AL A NA L Q
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAV---------GEGNA--------QLVAIFGGQ 163
Query: 112 GPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNA 171
G YF+ E R Y+ + L + +
Sbjct: 164 GNT---------------DDYFE-----ELRDLYQTYHV---------LVGDLIK---FS 191
Query: 172 ALPLIPALSSIQTTTPTENAEVFVH-MDFDAWLS 204
A L + + + +VF ++ WL
Sbjct: 192 AETLSELIRT-----TLDAEKVFTQGLNILEWLE 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.012
Identities = 46/294 (15%), Positives = 83/294 (28%), Gaps = 102/294 (34%)
Query: 1 MQAQQN---SFMKENAQLFEANATIKLEEEEPESSCMDVVEHPVALGPNQTPRPNTGPVY 57
++ Q + ++ IKL ++ +++ Y
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---------------Y 243
Query: 58 YTCILCQEEQALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKVNSLY--ISLEHQGPAP 115
C+L L +A AF ++ R TDF + ISL+H
Sbjct: 244 ENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 116 HTSTCGHVMHSTCWSKYFDNILAKE-NRRPYRL-RQPTSFDIEKNEFLCPLCECLSNAAL 173
++L K + RP L R+ + + P L
Sbjct: 299 TPD-------------EVKSLLLKYLDCRPQDLPREVLTTN--------PR-------RL 330
Query: 174 PLIPALSSIQTTTPTENAEVFVHMDFDAWLSIVEMVLEHKKRLKKSKATSECQDSTSSKQ 233
+I T +N + H++ D +I+E L
Sbjct: 331 SIIAESIRDGLATW-DN---WKHVNCDKLTTIIESSLNV--------------------- 365
Query: 234 VPQDRKPLEINRLINLPDDYSELINTVSLFTCPNSDREDSRNPA--LCLICGDM 285
LE P +Y ++ + +S+F + P L LI D+
Sbjct: 366 -------LE-------PAEYRKMFDRLSVF------PPSAHIPTILLSLIWFDV 399
Score = 35.6 bits (81), Expect = 0.024
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 196 HMDFDAWLSIVEMVLEHKKRL----KKSKATSECQD-STSSKQVPQDRKPLEINRLINLP 250
HMDF+ E ++K L +C+D K + EI+ +I
Sbjct: 6 HMDFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE---EIDHIIMSK 58
Query: 251 DDYSELINTVSLFTC 265
D S T+ LF
Sbjct: 59 DAVSG---TLRLFWT 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.5
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
Query: 213 KKRLKKSKATSECQDSTSSKQVPQDRKP-LEINRLI 247
K+ LKK +A S K D P L I +
Sbjct: 19 KQALKKLQA--------SLKLYADDSAPALAIKATM 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 27.8 bits (61), Expect = 2.6
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 103 SLYISLEHQGPAPHTSTCGHVMHSTCWSKYFDN-ILAKENRRPYRLRQPTSFDIEKNEFL 161
Y + G ++ CGHV S C N R+ ++ I
Sbjct: 15 DGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVS 74
Query: 162 CPLC 165
CP+C
Sbjct: 75 CPIC 78
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 27.5 bits (60), Expect = 2.7
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 120 CGHVMHSTCWSKYFDNILAKENRRPYRLRQPT 151
C H H C + N + + +
Sbjct: 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 26.7 bits (59), Expect = 3.5
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 15/60 (25%)
Query: 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALP 174
+ C + + C +Y + ++ + CP C L
Sbjct: 21 TTIAQCQCIFCTLCLKQYVELLIKEGLETAIS---------------CPDAACPKQGHLQ 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.0 bits (57), Expect = 4.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 118 STCGHVMHSTCWSKYF 133
TCG MH C +KYF
Sbjct: 32 ETCGIRMHLPCVAKYF 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 24.9 bits (55), Expect = 7.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 120 CGHVMHSTCWSKYF 133
CGH++H TC+ +
Sbjct: 27 CGHLLHRTCYEEML 40
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 27.3 bits (60), Expect = 8.2
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 266 PNSDREDSRNPALCLICGDMLCSQSY----CCQTELFFKMSARSFFT 308
P+ + +S C +CGD Y C + FF+ + R
Sbjct: 40 PHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLI 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.395
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,398,252
Number of extensions: 234290
Number of successful extensions: 501
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 22
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)