RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9235
         (317 letters)



>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 27.4 bits (60), Expect = 0.72
 Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 15/60 (25%)

Query: 115 PHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSNAALP 174
              + C  +  + C  +Y + ++ +                      CP   C     L 
Sbjct: 21  TTIAQCQCIFCTLCLKQYVELLIKEGLETAIS---------------CPDAACPKQGHLQ 65


>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 97

 Score = 26.3 bits (57), Expect = 2.1
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 6/66 (9%)

Query: 106 ISLEHQGPAPHTSTCGHVMHSTCWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLC 165
                         C H+  S C S             P  ++     D++ N  L  + 
Sbjct: 27  RCTNILREPVCLGGCEHIFCSNCVSDCI-GTGCPVCYTPAWIQ-----DLKINRQLDSMI 80

Query: 166 ECLSNA 171
           +  S  
Sbjct: 81  QLCSKL 86


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
           herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 6/30 (20%), Positives = 9/30 (30%)

Query: 106 ISLEHQGPAPHTSTCGHVMHSTCWSKYFDN 135
           I LE          C H     C +++   
Sbjct: 10  ICLEDPSNYSMALPCLHAFCYVCITRWIRQ 39


>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik
           protein {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 128

 Score = 24.9 bits (54), Expect = 9.5
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 198 DFDAWLSIVEMVLEHK---KRLKKSKATSECQDSTSSKQ 233
           DFD+W  +VE + E++   + L+K           + +Q
Sbjct: 28  DFDSWGQLVEAIDEYQILARHLQKEAQAQHNNSEFTEEQ 66


>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine
           phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus
           thermophilus [TaxId: 274]}
          Length = 258

 Score = 25.2 bits (54), Expect = 9.8
 Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 4/103 (3%)

Query: 68  ALTKQNDALVLAAFVQQSTVMFRNRNADRTDFKVNSLYISLEHQGPAPHTSTCGHVMHST 127
            +T QN   V    +    V++    +   DF +++        G A         +   
Sbjct: 38  LVTAQNTLGVQRVHLLPPEVVYAQIESVAQDFPLHAAKTGA--LGDAAIVEAVAEAVRRF 95

Query: 128 CWSKYFDNILAKENRRPYRLRQPTSFDIEKNEFLCPLCECLSN 170
                  + +                     E L PL + ++ 
Sbjct: 96  GVRPLVVDPVMVAKSGDP--LLAKEAAAALKERLFPLADLVTP 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,092,110
Number of extensions: 47073
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 12
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)