BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9244
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 162 bits (409), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
Query: 3 PLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL 62
P A P+P+ GV A+LLGPPG+GKGTQAP AK +CVCHL+TGDMLRA V+SGS L
Sbjct: 5 PAAEPVPESPK---GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSEL 61
Query: 63 GKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
GKKLK TMDAGKLVSDE+V++LI NL+ P C+NGFLLDGFPRTV QAE + LM K
Sbjct: 62 GKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 118
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 159 bits (402), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 75/103 (72%), Positives = 87/103 (84%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
G+ A+LLGPPG+GKGTQAP A+ +CVCHL+TGDMLRA V+SGS LGKKLK TMDAGKLV
Sbjct: 16 GIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 75
Query: 77 SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
SDE+VV+LI NL+ P C+NGFLLDGFPRTV QAE + LM K
Sbjct: 76 SDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEK 118
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 72/91 (79%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLG PG+GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V+ L+ + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 126 bits (316), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 72/91 (79%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLG PG+GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V+ L+ + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 71/91 (78%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLG P +GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V+ L+ + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
S + +L+GPPG+GKGTQAP +++ HL+TGDMLR++++ G+ LG + K+ MD G
Sbjct: 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75 LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
LVSD+++V++I + L + P C+NGF+LDGFPRT+PQAEK+ ++
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQML 105
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 122 bits (306), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
S + +L+GPPG+GKGTQAP +++ HL+TGDMLR++++ G+ LG + K+ MD G
Sbjct: 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75 LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
LVSD+++V++I + L + P C+NGF+LDGFPRT+PQAEK+ ++
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQML 105
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLG +GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4 ILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V+ L+ + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 118 bits (296), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
S + +L+GPPG+GKGTQAP +++ HL+TGDMLR++++ G+ LG + K+ MD G
Sbjct: 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75 LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
LVSD+++V++I + L + P C+NGF+L GFPRT+PQAEK+ ++
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQML 105
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 68/100 (68%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQA +KY H+STGDM RA + G+ LG K K MD G LV
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
DE+ + ++ L K +C NGFLLDGFPRTVPQAE + L+
Sbjct: 61 DEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLL 100
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 70/100 (70%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQA +KY + H+STGDM RA + +G+ LG K K MD G LV
Sbjct: 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
DE+ + ++ L K +CQ GFLLDGFPRTV QA+ + SL+
Sbjct: 61 DEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLL 100
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQA Y + H+STGDM RA + G+ LG + K+ MD G LV
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
DE+ + ++ L K +CQNGFLLDGFPRTV QAE + +++
Sbjct: 61 DEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETML 100
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 66/99 (66%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
I LG PGSGKGTQ+ K +C CHLSTGD+LR + LG K+K ++ GKLV D++
Sbjct: 33 IFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQM 92
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
V+ L+ L P+C+ GF+LDG+PR V QAE + L+ K
Sbjct: 93 VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQK 131
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 67/99 (67%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N IL+G PGSGKGTQ K+Y + HLSTGDMLR + +G+ +G + K +++G V D
Sbjct: 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
E+V+ L+ D C NGF+LDGFPRT+PQAE + ++
Sbjct: 67 EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKIL 105
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 102 bits (254), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ ++ G P SGKGTQ L KY + H+S GD+LRAE+++GS GK+ KE M+ G+LV
Sbjct: 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 78 DELVVDLISNNLDKPECQ-NGFLLDGFPRTVPQAEKVYSLMMK 119
DE+VV+++ L +P+ Q NG+LLDG+PR+ QA + +L ++
Sbjct: 66 DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR 108
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLG PG+GKGTQA +K+ + +STGD LRA V +G+ LG + K D GKLV D L
Sbjct: 12 ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
++ L+ L + +C NG+L DGFPRT+ QA+
Sbjct: 72 IIGLVKERLKEADCANGYLFDGFPRTIAQAD 102
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 8 LPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK 67
+P+ SH + +LLGPPG+GKGTQA A+K + +STG++ R + G+ LG + K
Sbjct: 15 VPRGSH----MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAK 70
Query: 68 ETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
+DAG LV +L +L+ + L+ P+ NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 71 RYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 122
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 63/92 (68%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQA +KY + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVRERLSKSDCERGFLLDGFPRTVAQ 92
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 69/102 (67%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ +LLGPPG+GKGTQA A+K + +STG++ R + G+ LG + K +DAG LV
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
+L +L+ + L+ P+ NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 61 SDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 102
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ +KY + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++G PGSGKGTQ +KY HLSTGD+LR+EVSSGS GKKL E M+ G+LV E
Sbjct: 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72
Query: 81 VVDLISNNL-DKPECQNGFLLDGFPRTVPQAEK 112
V+D++ + + K GFL+DG+PR V Q E+
Sbjct: 73 VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEE 105
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+ LGPPG+GKGTQA AK+ H+STGD+LR V G+ LGKK KE M+ G+LV D+L
Sbjct: 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
++ LI K + DGFPRTV QAE + ++ K
Sbjct: 64 IIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEK 99
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++G PGSGKGTQ +KY HLSTGD+LRAEVSSGS GK L E M+ G+LV E
Sbjct: 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 72
Query: 81 VVDLISNNL-DKPECQNGFLLDGFPRTVPQAEK 112
V+D++ + + K + GFL+DG+PR V Q E+
Sbjct: 73 VLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEE 105
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGTQ + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N +L+G PG+GKGT + Y + H+STGDM RA + + LG + K +D G+LV
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
DE+ + ++ L K +C+ GFLLDGFPRTV Q
Sbjct: 61 DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N ++ GP GSGKGTQ L KY + H+ +G + R + G+ LGKK KE +D G LV
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
D++ + ++ L+ + ++G+LLDGFPR QA+K++ + +
Sbjct: 61 DDITIPMVLETLE-SKGKDGWLLDGFPRNTVQAQKLFEALQE 101
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N ++ GP GSGKGTQ L KY + H+ +G + R + G+ LGKK KE +D G LV
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
D++ + ++ L+ + ++G+LLDGFPR QA+K++ + +
Sbjct: 61 DDITIPMVLETLE-SKGKDGWLLDGFPRNTVQAQKLFEALQE 101
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
G I LGPPG+GKGTQA A++ LSTGD+LR V+ G+ LG++++ M+ G
Sbjct: 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGD 61
Query: 75 LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
LV D+L+++LI + E + DGFPRT+ QAE + L+
Sbjct: 62 LVPDDLILELI-----REELAERVIFDGFPRTLAQAEALDRLL 99
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ A ++G PGSGKGT + K + + HLS+GD+LR + G+ +G K +D GKL+
Sbjct: 7 LRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
D+++ L+ + L K Q +LLDGFPRT+PQAE
Sbjct: 67 DDVMTRLVLHEL-KNLTQYNWLLDGFPRTLPQAE 99
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+LG PGSGKGTQ +K+ HLS+GD+LRAEV SGS GK+LK M+ G+LV E+
Sbjct: 33 FVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEV 92
Query: 81 VVDLISNNLDKPECQN-GFLLDGFPRTVPQAEK 112
V+ L+ + K +N FL+DG+PR + Q K
Sbjct: 93 VLALLKEAMIKLVDKNCHFLIDGYPRELDQGIK 125
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ A+++G PGSGKGT + + + HLS+GD+LR + G+ +G K +D GKL+
Sbjct: 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIP 67
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
D+++ L + L K Q +LLDGFPRT+PQAE
Sbjct: 68 DDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAE 100
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 11 ESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
+S S + A++LGPPGSGKGT A+ + + HLS+G LR + + + +G+ K+ +
Sbjct: 21 QSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYI 80
Query: 71 DAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
+ LV D ++ L+ + L+ Q+ +LLDGFPRT+ QAE
Sbjct: 81 EKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 120
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ A++LGPPGSGKGT A+ + + HLS+G LR + + + +G+ K+ ++ LV
Sbjct: 6 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP 65
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
D ++ L+ + L+ Q+ +LLDGFPRT+ QAE
Sbjct: 66 DHVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 98
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++G PGSGKGTQ +KY HLSTG++LR E++S S K +++ M+ G LV +
Sbjct: 16 FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGI 75
Query: 81 VVDLISNNLDKPECQ-NGFLLDGFPRTVPQAEK 112
V++L+ + GFL+DG+PR V Q E+
Sbjct: 76 VLELLKEAMVASLGDTRGFLIDGYPREVKQGEE 108
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLKETMDAGKLVSDE 79
+LG PG+GKGTQ K Y HLS GD+LRAE +GS G+ +K + G++V E
Sbjct: 19 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78
Query: 80 LVVDLISNNL--DKPECQNGFLLDGFPRTVPQA 110
+ + L+ N + + ++ FL+DGFPR + QA
Sbjct: 79 ITLALLRNAISDNVKANKHKFLIDGFPRKMDQA 111
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
+LG PGSGKGTQ + + HLS GD+LR E SGS G+ + + G++V
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSI 68
Query: 80 LVVDLISNNLDKPECQNGFLLDGFPR 105
+ V L+ N +D + +N FL+DGFPR
Sbjct: 69 VTVKLLKNAIDANQGKN-FLVDGFPR 93
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSD 78
+LG PG+GKGTQ +KY HLS G++LR E + S G+ +++ + GK+V
Sbjct: 6 VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV 65
Query: 79 ELVVDLISNNLDKPEC----QNGFLLDGFPRT 106
E+ + L+ +D+ +N FL+DGFPR
Sbjct: 66 EITISLLKREMDQTMAANAQKNKFLIDGFPRN 97
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
+N L GP +GK T A A + + ++ TG M RA L K T D KLV
Sbjct: 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK----TEDFAKLV 58
Query: 77 SDELVVDLISNNLDKPEC 94
D+ +DL + DK +C
Sbjct: 59 -DQTTLDL-TYKADKGQC 74
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP SGK T A + AK + +L TG M RA
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 40 KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNL 89
KY VC L + A V +LG KLK+ +D+ K + +D I NNL
Sbjct: 336 KYIVCMLKENKIDAAAVIGDVSLGTKLKKAIDSSKSFDNISSLDAILNNL 385
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 7 PLPKESHESTGVNAILLGPPGSGKGTQAPLFAK 39
PLP+ + IL GPPG+GK T A + A+
Sbjct: 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIAR 72
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L G PG GK T A K + +++ GD+ R E L E D ++ +
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-----QLYDGYDEEYDC-PILDE 66
Query: 79 ELVVDLISNNL 89
+ VVD + N +
Sbjct: 67 DRVVDELDNQM 77
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55
N +L G PG GK T A K + +++ GD+ R E
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLR 53
G+N ++ G PG+GK + A + A + HL G +++
Sbjct: 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 47
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
GP G+GK + A A++ +L TG M R
Sbjct: 11 GPSGTGKSSVAKELARQLGASYLDTGAMYR 40
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+LLG PG GK + A LFA K
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGK 27
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 20 AILLGPPGSGKGTQAPLFAKK 40
A+L GPPG GK T A L A++
Sbjct: 80 AMLYGPPGIGKTTAAHLVAQE 100
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 65 KLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98
+LKE DA KL + + V DL++ K EC GF
Sbjct: 250 RLKEXHDAFKLSNPDGVFDLVT----KSECLQGF 279
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 3 PLAYPLPKESHESTGV----NAILLGPPGSGKGTQAPLFAKKY-C-VCHLSTGDMLRAEV 56
P+ +P E ES G+ IL GPPG+GK A A C +S ++++ +
Sbjct: 167 PVKHP---ELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223
Query: 57 SSGSNLGKKL 66
GS + ++L
Sbjct: 224 GEGSRMVREL 233
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 18/91 (19%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA 72
HE T N +++GP G GK A AK L+ ++ E + + +G KE
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK------LANAPFIKVEATKFTEVGYVGKEV--- 96
Query: 73 GKLVSDELVVDLISN---NLDKPECQNGFLL 100
D ++ DL + +D E QNG +
Sbjct: 97 -----DSIIRDLTDSAGGAIDAVE-QNGIVF 121
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone
Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor
Complex
Length = 444
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
HE T N +++GP G GK A AK L+ ++ E + + +G KE
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK------LANAPFIKVEATKFTEVGYVGKE 95
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
HE T N +++GP G GK A AK L+ ++ E + + +G KE
Sbjct: 46 HEVTPKNILMIGPTGVGKTEIARRLAK------LANAPFIKVEATKFTEVGYVGKE 95
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
HE T N +++GP G GK A AK L+ ++ E + + +G KE
Sbjct: 45 HEVTPKNILMIGPTGVGKTEIARRLAK------LANAPFIKVEATKFTEVGYVGKE 94
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
HE T N +++GP G GK A AK L+ ++ E + + +G KE
Sbjct: 52 HEVTPKNILMIGPTGVGKTEIARRLAK------LANAPFIKVEATKFTEVGYVGKE 101
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDML 52
+ +L GPPG GK T A + A + H+++G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDML 52
+ +L GPPG GK T A + A + H+++G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDML 52
+ +L GPPG GK T A + A + H+++G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDML 52
+ +L GPPG GK T A + A + H+++G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDML 52
+ +L GPPG GK T A + A + H+++G +L
Sbjct: 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 17 GVNAILLGPPGSGKGT------QAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
G+ +L GP G GKGT + P + KY + ++T M EV G + K ++
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSIS-MTTRQMREGEV-DGVDYFFKTRDAF 63
Query: 71 DAGKLVSDELVVD 83
+A L+ D+ ++
Sbjct: 64 EA--LIKDDQFIE 74
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 37 FAKKYCVCHLSTGDMLRAEVSSGSNLGKKL 66
FAK CH+ TG+M+ ++ + LG L
Sbjct: 23 FAKVKLACHILTGEMVAIKIMDKNTLGSDL 52
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 9 PKESHES----TGVNAILLGPPGSGKGTQAPLFAKKYCV 43
P SH S G L+G GSGK T A LF + Y V
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 62 LGKKLKETMDAGKLVSDELVVDLISNNLDK 91
GK+LK+ ++ G+LV +DLIS NL +
Sbjct: 147 FGKELKKNLEHGQLVD----LDLISGNLSE 172
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 59 GSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96
GS+LGKKL E AG+ D+ V LI+N D N
Sbjct: 11 GSDLGKKLLEAARAGQ---DDEVRILIANGADVNAVDN 45
>pdb|1CCW|B Chain B, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|D Chain D, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CB7|B Chain B, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|D Chain D, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1I9C|B Chain B, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|D Chain D, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
Length = 483
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL 75
TGV I GP G P+ CV +L G++ E N + + G+
Sbjct: 401 TGVMDIPFGPSKYNAGKMMPVRDNLGCVRYLEFGNVPFTEEIKNYNRERLQERAKFEGRD 460
Query: 76 VSDELVVDLI 85
VS ++V+D I
Sbjct: 461 VSFQMVIDDI 470
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,824,480
Number of Sequences: 62578
Number of extensions: 151107
Number of successful extensions: 464
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 76
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)