Query psy9244
Match_columns 119
No_of_seqs 199 out of 1411
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 22:31:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 1.1E-30 2.3E-35 183.5 12.6 102 17-118 31-132 (244)
2 KOG3079|consensus 100.0 3.4E-30 7.4E-35 171.8 12.2 107 12-118 3-110 (195)
3 PF00406 ADK: Adenylate kinase 100.0 3.9E-30 8.5E-35 169.2 11.0 96 22-117 1-96 (151)
4 PRK14529 adenylate kinase; Pro 100.0 2.5E-29 5.4E-34 174.7 11.0 100 18-118 1-100 (223)
5 PLN02459 probable adenylate ki 100.0 6E-29 1.3E-33 175.6 11.8 100 17-116 29-130 (261)
6 COG0563 Adk Adenylate kinase a 100.0 1.6E-28 3.5E-33 165.7 11.5 101 18-118 1-101 (178)
7 PRK13808 adenylate kinase; Pro 100.0 1.8E-28 3.8E-33 178.4 12.0 101 18-118 1-101 (333)
8 PTZ00088 adenylate kinase 1; P 100.0 6.1E-28 1.3E-32 168.6 11.7 101 16-116 5-107 (229)
9 PRK14532 adenylate kinase; Pro 100.0 2E-27 4.4E-32 161.1 12.2 100 19-118 2-101 (188)
10 PRK14526 adenylate kinase; Pro 100.0 1.8E-27 3.8E-32 164.5 11.6 99 19-117 2-100 (211)
11 TIGR01351 adk adenylate kinase 99.9 3E-27 6.6E-32 163.1 11.8 100 19-118 1-101 (210)
12 PRK00279 adk adenylate kinase; 99.9 5.8E-27 1.3E-31 162.2 11.6 101 18-118 1-101 (215)
13 PRK14528 adenylate kinase; Pro 99.9 1.1E-26 2.5E-31 157.7 12.3 101 18-118 2-102 (186)
14 PRK14531 adenylate kinase; Pro 99.9 1.3E-26 2.9E-31 156.9 11.9 101 17-118 2-102 (183)
15 PRK02496 adk adenylate kinase; 99.9 2.5E-26 5.4E-31 155.4 12.5 101 18-118 2-102 (184)
16 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 6.5E-26 1.4E-30 152.9 11.9 98 19-117 1-98 (183)
17 PLN02200 adenylate kinase fami 99.9 4.5E-25 9.8E-30 154.7 13.0 104 13-117 39-142 (234)
18 cd01428 ADK Adenylate kinase ( 99.9 8.3E-25 1.8E-29 148.4 11.8 100 19-118 1-100 (194)
19 PRK14527 adenylate kinase; Pro 99.9 1.3E-24 2.7E-29 148.0 12.3 102 16-118 5-106 (191)
20 KOG3078|consensus 99.9 4.7E-23 1E-27 143.0 10.0 100 16-115 14-113 (235)
21 PRK14530 adenylate kinase; Pro 99.9 1.3E-22 2.8E-27 140.4 11.3 96 17-116 3-103 (215)
22 PLN02842 nucleotide kinase 99.9 1.4E-22 3E-27 153.9 10.6 96 21-116 1-97 (505)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 1.3E-21 2.9E-26 132.0 12.4 102 16-117 2-104 (188)
24 PRK01184 hypothetical protein; 99.6 8.7E-15 1.9E-19 98.8 11.1 94 18-117 2-101 (184)
25 PRK08356 hypothetical protein; 99.6 6.4E-15 1.4E-19 100.6 6.9 93 18-115 6-113 (195)
26 PRK08118 topology modulation p 99.5 2.8E-14 6.1E-19 95.5 7.7 71 18-108 2-73 (167)
27 PRK03839 putative kinase; Prov 99.4 6.4E-13 1.4E-17 89.5 7.0 37 19-55 2-38 (180)
28 PRK06217 hypothetical protein; 99.4 6.4E-13 1.4E-17 89.9 5.9 74 18-106 2-75 (183)
29 PF13207 AAA_17: AAA domain; P 99.4 6.9E-13 1.5E-17 83.6 4.5 34 19-52 1-34 (121)
30 PHA02530 pseT polynucleotide k 99.4 3E-12 6.5E-17 92.3 8.1 95 17-117 2-97 (300)
31 PRK13949 shikimate kinase; Pro 99.3 1.1E-11 2.3E-16 83.2 8.9 89 18-115 2-93 (169)
32 COG1102 Cmk Cytidylate kinase 99.3 8.8E-12 1.9E-16 82.4 8.1 43 18-60 1-43 (179)
33 PRK07261 topology modulation p 99.3 8.3E-12 1.8E-16 83.8 6.0 35 18-52 1-35 (171)
34 PRK04182 cytidylate kinase; Pr 99.2 4.7E-11 1E-15 79.8 7.7 41 18-58 1-41 (180)
35 PRK14730 coaE dephospho-CoA ki 99.2 1.7E-11 3.6E-16 84.0 5.2 54 18-71 2-55 (195)
36 TIGR02173 cyt_kin_arch cytidyl 99.2 1.1E-10 2.4E-15 77.5 7.9 40 18-57 1-40 (171)
37 KOG3347|consensus 99.2 1.6E-11 3.4E-16 80.3 3.5 42 15-56 5-46 (176)
38 PF13671 AAA_33: AAA domain; P 99.2 5.4E-11 1.2E-15 76.8 5.8 89 19-118 1-93 (143)
39 PRK12339 2-phosphoglycerate ki 99.2 3.7E-11 8E-16 82.4 5.0 43 16-58 2-44 (197)
40 PRK04040 adenylate kinase; Pro 99.2 1.1E-10 2.4E-15 79.6 7.0 43 17-59 2-46 (188)
41 cd02022 DPCK Dephospho-coenzym 99.1 7.8E-11 1.7E-15 79.5 5.1 52 19-71 1-52 (179)
42 COG0703 AroK Shikimate kinase 99.1 1.4E-10 3.1E-15 77.6 5.9 41 17-57 2-42 (172)
43 PRK13948 shikimate kinase; Pro 99.1 4.7E-10 1E-14 76.1 8.4 41 16-56 9-49 (182)
44 PRK00081 coaE dephospho-CoA ki 99.1 9.9E-11 2.2E-15 80.0 5.0 54 17-71 2-55 (194)
45 COG0237 CoaE Dephospho-CoA kin 99.1 4.5E-10 9.8E-15 77.3 8.0 54 17-71 2-55 (201)
46 PRK00625 shikimate kinase; Pro 99.1 9.8E-11 2.1E-15 78.8 4.6 39 18-56 1-39 (173)
47 cd02020 CMPK Cytidine monophos 99.1 1E-10 2.2E-15 75.7 4.0 35 19-53 1-35 (147)
48 PRK14734 coaE dephospho-CoA ki 99.1 5.2E-10 1.1E-14 76.9 7.1 55 18-73 2-56 (200)
49 PRK13947 shikimate kinase; Pro 99.1 2E-09 4.4E-14 71.6 9.6 38 18-55 2-39 (171)
50 PRK06762 hypothetical protein; 99.0 3.9E-09 8.5E-14 70.0 9.9 39 17-55 2-42 (166)
51 PRK00131 aroK shikimate kinase 99.0 3.6E-10 7.8E-15 75.0 4.9 41 16-56 3-43 (175)
52 cd00464 SK Shikimate kinase (S 99.0 3.4E-09 7.3E-14 69.2 9.1 39 19-57 1-39 (154)
53 TIGR00152 dephospho-CoA kinase 99.0 9.5E-10 2.1E-14 74.6 5.7 52 19-70 1-52 (188)
54 PRK13946 shikimate kinase; Pro 99.0 5.4E-09 1.2E-13 70.8 9.0 43 14-56 7-49 (184)
55 PLN02422 dephospho-CoA kinase 99.0 6.8E-10 1.5E-14 77.9 4.6 51 19-70 3-53 (232)
56 TIGR02881 spore_V_K stage V sp 99.0 4.4E-09 9.6E-14 74.8 8.5 28 14-41 39-66 (261)
57 PRK08233 hypothetical protein; 99.0 8.7E-10 1.9E-14 73.8 4.3 26 17-42 3-28 (182)
58 PF01121 CoaE: Dephospho-CoA k 98.9 1.5E-09 3.3E-14 73.5 5.2 53 18-71 1-53 (180)
59 PTZ00451 dephospho-CoA kinase; 98.9 5.1E-09 1.1E-13 74.0 7.8 53 18-70 2-54 (244)
60 PRK14021 bifunctional shikimat 98.9 6.2E-09 1.3E-13 81.0 8.7 44 13-56 2-45 (542)
61 PRK14733 coaE dephospho-CoA ki 98.9 2.2E-09 4.8E-14 74.0 5.3 51 16-67 5-55 (204)
62 TIGR00017 cmk cytidylate kinas 98.9 4.3E-09 9.3E-14 73.2 6.2 38 18-55 3-40 (217)
63 cd02021 GntK Gluconate kinase 98.9 7.9E-09 1.7E-13 67.4 7.1 35 20-54 2-36 (150)
64 COG1936 Predicted nucleotide k 98.9 2.3E-09 4.9E-14 71.7 4.5 38 18-56 1-38 (180)
65 CHL00181 cbbX CbbX; Provisiona 98.9 8.4E-09 1.8E-13 74.5 7.7 44 14-57 56-108 (287)
66 PLN02199 shikimate kinase 98.9 1.4E-08 3.1E-13 73.4 8.4 40 17-56 102-141 (303)
67 PRK03731 aroL shikimate kinase 98.9 3.7E-09 7.9E-14 70.5 4.6 39 18-56 3-41 (171)
68 PRK06547 hypothetical protein; 98.8 5.1E-09 1.1E-13 70.5 4.7 41 14-54 12-52 (172)
69 PRK12338 hypothetical protein; 98.8 2.4E-08 5.2E-13 72.9 8.2 42 16-57 3-44 (319)
70 PRK03333 coaE dephospho-CoA ki 98.8 1.5E-08 3.3E-13 76.1 7.3 52 18-70 2-53 (395)
71 PRK14731 coaE dephospho-CoA ki 98.8 1.1E-08 2.4E-13 70.7 5.8 50 16-66 4-53 (208)
72 PRK13951 bifunctional shikimat 98.8 2.8E-08 6E-13 76.5 7.9 38 18-55 1-38 (488)
73 PRK13477 bifunctional pantoate 98.8 2.1E-08 4.6E-13 77.3 7.3 41 15-55 282-322 (512)
74 PRK14732 coaE dephospho-CoA ki 98.8 1E-08 2.2E-13 70.3 4.9 50 20-70 2-51 (196)
75 TIGR02880 cbbX_cfxQ probable R 98.8 4.6E-08 9.9E-13 70.6 8.4 94 16-110 57-175 (284)
76 cd02019 NK Nucleoside/nucleoti 98.8 1.1E-08 2.5E-13 58.8 4.3 23 19-41 1-23 (69)
77 PRK13974 thymidylate kinase; P 98.8 1.5E-08 3.3E-13 70.1 5.6 100 17-116 3-128 (212)
78 TIGR03574 selen_PSTK L-seryl-t 98.8 7.9E-08 1.7E-12 67.9 9.0 32 20-51 2-38 (249)
79 PRK05057 aroK shikimate kinase 98.8 1.1E-08 2.4E-13 68.7 4.3 40 17-56 4-43 (172)
80 COG0283 Cmk Cytidylate kinase 98.7 2.1E-08 4.5E-13 69.3 4.9 39 18-56 5-43 (222)
81 PRK13973 thymidylate kinase; P 98.7 5E-08 1.1E-12 67.5 6.8 41 17-57 3-54 (213)
82 PRK05800 cobU adenosylcobinami 98.7 2.3E-08 4.9E-13 67.2 4.8 38 18-55 2-41 (170)
83 TIGR01313 therm_gnt_kin carboh 98.7 8.7E-09 1.9E-13 68.2 2.6 33 20-52 1-33 (163)
84 PRK00023 cmk cytidylate kinase 98.7 2.2E-08 4.7E-13 70.0 4.7 39 17-55 4-42 (225)
85 PRK08154 anaerobic benzoate ca 98.7 2.7E-08 5.9E-13 72.5 5.2 45 12-56 128-172 (309)
86 PRK11860 bifunctional 3-phosph 98.7 1.1E-07 2.4E-12 75.7 8.5 39 17-55 442-480 (661)
87 KOG3354|consensus 98.7 8.5E-08 1.8E-12 63.4 6.4 38 17-54 12-49 (191)
88 PRK13975 thymidylate kinase; P 98.7 1.5E-07 3.2E-12 63.9 7.5 26 18-43 3-28 (196)
89 PF13238 AAA_18: AAA domain; P 98.7 4.3E-08 9.3E-13 61.8 4.6 22 20-41 1-22 (129)
90 PRK12724 flagellar biosynthesi 98.7 3E-07 6.4E-12 69.5 9.7 94 16-118 222-326 (432)
91 PF06414 Zeta_toxin: Zeta toxi 98.6 3.6E-08 7.7E-13 67.5 3.8 40 15-54 13-55 (199)
92 PF00004 AAA: ATPase family as 98.6 3E-08 6.6E-13 62.7 3.2 33 20-52 1-35 (132)
93 PLN02165 adenylate isopentenyl 98.6 6.4E-08 1.4E-12 71.1 5.1 40 12-51 38-77 (334)
94 smart00072 GuKc Guanylate kina 98.6 1.5E-08 3.2E-13 68.6 1.4 92 18-112 3-110 (184)
95 TIGR01663 PNK-3'Pase polynucle 98.6 7.8E-07 1.7E-11 69.0 11.0 38 14-51 366-403 (526)
96 cd00227 CPT Chloramphenicol (C 98.6 7E-08 1.5E-12 64.8 4.5 38 17-54 2-41 (175)
97 KOG3220|consensus 98.6 1.1E-07 2.4E-12 65.1 5.3 59 18-77 2-60 (225)
98 PF01745 IPT: Isopentenyl tran 98.6 6.1E-08 1.3E-12 67.1 4.1 85 18-103 2-98 (233)
99 COG4088 Predicted nucleotide k 98.6 4.9E-07 1.1E-11 62.5 8.3 24 18-41 2-25 (261)
100 PHA00729 NTP-binding motif con 98.6 2.1E-07 4.6E-12 65.0 6.6 25 18-42 18-42 (226)
101 PRK06696 uridine kinase; Valid 98.6 5.4E-08 1.2E-12 67.8 3.4 41 14-54 19-64 (223)
102 PRK08181 transposase; Validate 98.6 4.3E-07 9.2E-12 65.2 8.0 79 13-91 102-199 (269)
103 COG1222 RPT1 ATP-dependent 26S 98.5 4.3E-07 9.4E-12 67.0 7.7 52 15-66 183-236 (406)
104 PRK09518 bifunctional cytidyla 98.5 5.6E-08 1.2E-12 77.9 3.4 39 18-56 2-40 (712)
105 PLN02748 tRNA dimethylallyltra 98.5 1.7E-07 3.7E-12 71.7 5.6 48 3-50 4-55 (468)
106 PF01202 SKI: Shikimate kinase 98.5 2.8E-07 6.1E-12 61.0 5.9 81 26-114 1-83 (158)
107 cd02024 NRK1 Nicotinamide ribo 98.5 7.9E-08 1.7E-12 65.5 3.0 37 19-55 1-38 (187)
108 PRK05541 adenylylsulfate kinas 98.5 1.4E-07 3.1E-12 63.2 4.2 37 15-51 5-46 (176)
109 COG0572 Udk Uridine kinase [Nu 98.5 3.6E-07 7.9E-12 63.4 6.2 40 15-54 6-48 (218)
110 PRK05480 uridine/cytidine kina 98.5 1.2E-07 2.7E-12 65.1 3.6 40 14-53 3-45 (209)
111 PF01695 IstB_IS21: IstB-like 98.5 1.9E-07 4.2E-12 63.1 4.3 46 12-57 42-92 (178)
112 PRK06526 transposase; Provisio 98.5 4E-07 8.6E-12 64.8 5.5 46 12-57 93-143 (254)
113 PF01583 APS_kinase: Adenylyls 98.4 2.5E-07 5.5E-12 61.3 4.1 38 16-53 1-43 (156)
114 KOG0733|consensus 98.4 1.9E-06 4.2E-11 67.5 9.4 41 17-57 545-587 (802)
115 PRK12269 bifunctional cytidyla 98.4 3.2E-07 6.9E-12 74.7 5.3 39 18-56 35-73 (863)
116 PRK06921 hypothetical protein; 98.4 1.4E-06 3.1E-11 62.4 8.1 40 17-56 117-162 (266)
117 TIGR00235 udk uridine kinase. 98.4 2.3E-07 4.9E-12 63.9 3.7 39 14-52 3-44 (207)
118 PRK12377 putative replication 98.4 2.6E-06 5.6E-11 60.5 9.0 41 17-57 101-146 (248)
119 PRK04220 2-phosphoglycerate ki 98.4 3.9E-07 8.5E-12 66.1 4.9 41 15-56 90-131 (301)
120 PRK00889 adenylylsulfate kinas 98.4 3.6E-07 7.7E-12 61.2 4.3 38 16-53 3-45 (175)
121 PF13401 AAA_22: AAA domain; P 98.4 7E-07 1.5E-11 56.6 5.4 82 16-103 3-96 (131)
122 PRK09183 transposase/IS protei 98.4 1.9E-06 4.2E-11 61.4 8.1 44 12-55 97-145 (259)
123 PRK00091 miaA tRNA delta(2)-is 98.4 3E-07 6.5E-12 67.1 3.9 35 17-51 4-38 (307)
124 PRK06835 DNA replication prote 98.4 3.3E-06 7.2E-11 62.2 9.2 42 16-57 182-228 (329)
125 PF13521 AAA_28: AAA domain; P 98.4 2.2E-07 4.8E-12 61.5 2.8 36 19-57 1-36 (163)
126 COG1618 Predicted nucleotide k 98.4 1.1E-07 2.4E-12 63.1 1.3 43 15-57 3-45 (179)
127 COG1484 DnaC DNA replication p 98.4 1.6E-06 3.4E-11 61.7 7.1 85 16-103 104-208 (254)
128 cd02027 APSK Adenosine 5'-phos 98.4 4.1E-06 8.8E-11 55.0 8.3 33 20-52 2-39 (149)
129 PF05496 RuvB_N: Holliday junc 98.4 4.9E-07 1.1E-11 63.2 3.8 30 17-46 50-79 (233)
130 smart00382 AAA ATPases associa 98.3 5E-07 1.1E-11 56.6 3.5 27 17-43 2-28 (148)
131 COG2019 AdkA Archaeal adenylat 98.3 2.4E-06 5.1E-11 57.2 6.6 42 17-58 4-46 (189)
132 cd02028 UMPK_like Uridine mono 98.3 4.3E-07 9.4E-12 61.4 3.1 37 19-55 1-42 (179)
133 PF00485 PRK: Phosphoribulokin 98.3 5E-07 1.1E-11 61.6 3.5 24 19-42 1-24 (194)
134 PRK03846 adenylylsulfate kinas 98.3 7.6E-07 1.6E-11 60.9 4.3 41 12-52 19-64 (198)
135 TIGR00455 apsK adenylylsulfate 98.3 1.4E-05 3E-10 53.9 10.3 40 14-53 15-59 (184)
136 PF13173 AAA_14: AAA domain 98.3 4.8E-06 1.1E-10 53.1 7.6 39 17-55 2-44 (128)
137 PLN02840 tRNA dimethylallyltra 98.3 7.4E-07 1.6E-11 67.4 4.3 38 13-50 17-54 (421)
138 KOG0744|consensus 98.3 4.8E-07 1E-11 66.3 3.2 42 18-59 178-230 (423)
139 TIGR02640 gas_vesic_GvpN gas v 98.3 4.1E-06 8.8E-11 59.8 7.9 30 17-46 21-50 (262)
140 PRK07667 uridine kinase; Provi 98.3 6.4E-07 1.4E-11 61.1 3.6 40 16-55 16-60 (193)
141 PRK09825 idnK D-gluconate kina 98.3 7.6E-07 1.7E-11 60.0 3.6 35 17-51 3-37 (176)
142 PF05729 NACHT: NACHT domain 98.3 1.6E-06 3.5E-11 56.6 5.1 23 19-41 2-24 (166)
143 cd01673 dNK Deoxyribonucleosid 98.3 4.3E-06 9.2E-11 56.7 7.3 27 20-46 2-28 (193)
144 PRK08116 hypothetical protein; 98.3 4.5E-06 9.8E-11 59.8 7.6 39 18-56 115-158 (268)
145 TIGR00390 hslU ATP-dependent p 98.3 7.3E-07 1.6E-11 67.4 3.7 35 16-50 46-80 (441)
146 cd02023 UMPK Uridine monophosp 98.3 5.7E-07 1.2E-11 61.3 2.9 35 19-53 1-38 (198)
147 PLN02924 thymidylate kinase 98.3 2.1E-06 4.6E-11 59.9 5.8 61 14-76 13-73 (220)
148 cd00009 AAA The AAA+ (ATPases 98.3 7.1E-06 1.5E-10 51.8 7.8 25 17-41 19-43 (151)
149 TIGR00174 miaA tRNA isopenteny 98.3 7.3E-07 1.6E-11 64.5 3.4 31 20-50 2-32 (287)
150 PTZ00301 uridine kinase; Provi 98.3 7.5E-07 1.6E-11 61.8 3.2 37 17-53 3-46 (210)
151 PF07728 AAA_5: AAA domain (dy 98.3 8.5E-07 1.8E-11 57.1 3.3 27 19-45 1-27 (139)
152 PRK00698 tmk thymidylate kinas 98.3 1.3E-06 2.8E-11 59.5 4.3 25 17-41 3-27 (205)
153 PRK05439 pantothenate kinase; 98.3 8.4E-07 1.8E-11 64.8 3.5 41 13-53 82-129 (311)
154 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.6E-06 1E-10 57.6 7.1 39 15-53 36-79 (226)
155 KOG0735|consensus 98.3 1.5E-05 3.3E-10 63.6 10.5 99 15-117 699-848 (952)
156 PRK05201 hslU ATP-dependent pr 98.2 1E-06 2.2E-11 66.6 3.8 34 17-50 50-83 (443)
157 PRK12337 2-phosphoglycerate ki 98.2 1.8E-06 4E-11 65.9 5.1 40 15-55 253-293 (475)
158 COG0645 Predicted kinase [Gene 98.2 1.1E-05 2.4E-10 53.9 8.1 39 19-57 3-41 (170)
159 PRK09087 hypothetical protein; 98.2 1.7E-06 3.8E-11 60.5 4.6 36 18-53 45-80 (226)
160 PRK15453 phosphoribulokinase; 98.2 1.1E-06 2.4E-11 63.3 3.6 38 15-52 3-45 (290)
161 PRK05537 bifunctional sulfate 98.2 1.5E-06 3.2E-11 68.2 4.5 39 13-51 388-432 (568)
162 PHA02575 1 deoxynucleoside mon 98.2 1.9E-06 4.1E-11 60.1 4.4 40 18-57 1-40 (227)
163 TIGR02322 phosphon_PhnN phosph 98.2 1.4E-06 3.1E-11 58.4 3.7 25 18-42 2-26 (179)
164 PRK08099 bifunctional DNA-bind 98.2 1.1E-06 2.4E-11 66.3 3.5 34 12-45 214-247 (399)
165 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.8E-11 59.2 3.5 31 17-47 2-32 (186)
166 COG0529 CysC Adenylylsulfate k 98.2 1.6E-06 3.4E-11 58.5 3.7 45 12-57 18-67 (197)
167 TIGR00041 DTMP_kinase thymidyl 98.2 1.3E-06 2.9E-11 59.2 3.2 26 17-42 3-28 (195)
168 TIGR03263 guanyl_kin guanylate 98.2 1.5E-06 3.3E-11 58.2 3.4 26 18-43 2-27 (180)
169 PF01591 6PF2K: 6-phosphofruct 98.2 3.4E-05 7.4E-10 53.9 10.1 98 13-118 8-119 (222)
170 cd02025 PanK Pantothenate kina 98.2 1.2E-06 2.6E-11 61.1 2.7 33 20-52 2-41 (220)
171 PLN00020 ribulose bisphosphate 98.2 1.8E-06 3.9E-11 64.4 3.5 43 15-57 146-190 (413)
172 cd01672 TMPK Thymidine monopho 98.2 2E-06 4.3E-11 58.0 3.5 23 19-41 2-24 (200)
173 PF03266 NTPase_1: NTPase; In 98.2 2.4E-06 5.2E-11 57.3 3.7 23 19-41 1-23 (168)
174 PRK00300 gmk guanylate kinase; 98.1 2.7E-06 5.8E-11 58.1 3.9 27 16-42 4-30 (205)
175 PRK14738 gmk guanylate kinase; 98.1 3E-06 6.4E-11 58.4 4.1 29 12-40 8-36 (206)
176 PF07931 CPT: Chloramphenicol 98.1 3.4E-06 7.3E-11 56.9 4.1 38 18-55 2-41 (174)
177 PRK11545 gntK gluconate kinase 98.1 1.2E-06 2.6E-11 58.3 1.9 29 23-51 1-29 (163)
178 COG0324 MiaA tRNA delta(2)-iso 98.1 3.1E-06 6.7E-11 61.6 4.1 36 16-51 2-37 (308)
179 CHL00195 ycf46 Ycf46; Provisio 98.1 2.4E-06 5.1E-11 66.0 3.7 33 16-48 258-290 (489)
180 TIGR00554 panK_bact pantothena 98.1 2.2E-06 4.9E-11 62.1 3.3 39 14-52 59-104 (290)
181 PRK08939 primosomal protein Dn 98.1 6E-06 1.3E-10 60.3 5.6 86 17-104 156-261 (306)
182 PRK03992 proteasome-activating 98.1 2.3E-06 5.1E-11 64.3 3.5 39 17-55 165-205 (389)
183 COG2256 MGS1 ATPase related to 98.1 2.8E-06 6.1E-11 63.6 3.6 32 16-47 47-78 (436)
184 COG1428 Deoxynucleoside kinase 98.1 3.4E-06 7.4E-11 58.2 3.7 30 17-46 4-33 (216)
185 cd02030 NDUO42 NADH:Ubiquinone 98.1 7.9E-06 1.7E-10 56.8 5.7 28 19-46 1-28 (219)
186 PRK14086 dnaA chromosomal repl 98.1 2.6E-05 5.7E-10 61.6 9.0 37 20-56 317-360 (617)
187 PRK07952 DNA replication prote 98.1 6.2E-06 1.4E-10 58.4 5.1 39 18-56 100-143 (244)
188 PRK07429 phosphoribulokinase; 98.1 3.8E-06 8.3E-11 61.8 4.1 39 14-52 5-46 (327)
189 KOG0733|consensus 98.1 2.5E-06 5.4E-11 66.9 3.2 33 17-49 223-255 (802)
190 PRK06620 hypothetical protein; 98.1 3.3E-06 7.3E-11 58.6 3.5 31 18-48 45-75 (214)
191 smart00763 AAA_PrkA PrkA AAA d 98.1 3.6E-06 7.9E-11 62.5 3.8 28 16-43 77-104 (361)
192 PRK05342 clpX ATP-dependent pr 98.1 4E-06 8.6E-11 63.5 4.0 32 17-48 108-139 (412)
193 TIGR01242 26Sp45 26S proteasom 98.1 4E-06 8.6E-11 62.4 4.0 38 17-54 156-195 (364)
194 PRK06761 hypothetical protein; 98.1 3.5E-06 7.6E-11 60.8 3.5 26 18-43 4-29 (282)
195 KOG0730|consensus 98.1 2.2E-05 4.9E-10 61.8 8.1 43 15-57 466-510 (693)
196 cd00544 CobU Adenosylcobinamid 98.1 7.9E-06 1.7E-10 54.9 4.8 29 20-48 2-32 (169)
197 PRK08903 DnaA regulatory inact 98.1 6.7E-06 1.5E-10 57.1 4.6 37 17-53 42-83 (227)
198 PRK06893 DNA replication initi 98.1 5E-06 1.1E-10 58.2 3.9 32 18-49 40-76 (229)
199 PRK14737 gmk guanylate kinase; 98.1 5.2E-06 1.1E-10 56.5 3.8 26 16-41 3-28 (186)
200 TIGR01241 FtsH_fam ATP-depende 98.0 4.4E-06 9.6E-11 64.5 3.8 37 17-53 88-126 (495)
201 PRK08084 DNA replication initi 98.0 4.8E-06 1E-10 58.5 3.7 33 18-50 46-83 (235)
202 PTZ00454 26S protease regulato 98.0 4.8E-06 1E-10 62.8 3.9 39 16-54 178-218 (398)
203 TIGR01650 PD_CobS cobaltochela 98.0 3.8E-06 8.3E-11 61.7 3.2 29 18-46 65-93 (327)
204 PLN02348 phosphoribulokinase 98.0 5.1E-06 1.1E-10 62.3 3.7 28 15-42 47-74 (395)
205 TIGR00635 ruvB Holliday juncti 98.0 6.3E-06 1.4E-10 59.6 4.1 29 16-44 29-57 (305)
206 TIGR03575 selen_PSTK_euk L-ser 98.0 3.2E-06 6.9E-11 62.5 2.6 34 20-53 2-41 (340)
207 PF06745 KaiC: KaiC; InterPro 98.0 6.8E-06 1.5E-10 57.1 4.1 87 16-103 18-124 (226)
208 KOG0734|consensus 98.0 2.8E-05 6E-10 60.5 7.6 33 16-48 336-368 (752)
209 COG3265 GntK Gluconate kinase 98.0 2.7E-06 5.9E-11 55.8 1.9 30 23-52 1-30 (161)
210 PHA02244 ATPase-like protein 98.0 4.8E-06 1E-10 62.1 3.4 38 16-53 118-155 (383)
211 COG2074 2-phosphoglycerate kin 98.0 9.5E-06 2.1E-10 57.6 4.7 44 14-57 86-129 (299)
212 PRK05642 DNA replication initi 98.0 1.1E-05 2.3E-10 56.7 4.9 37 18-54 46-87 (234)
213 PRK05506 bifunctional sulfate 98.0 3.9E-05 8.4E-10 61.0 8.5 40 14-53 457-501 (632)
214 PRK00771 signal recognition pa 98.0 1.7E-05 3.6E-10 60.6 6.1 36 14-49 92-132 (437)
215 TIGR00382 clpX endopeptidase C 98.0 5.8E-06 1.3E-10 62.6 3.5 30 17-46 116-145 (413)
216 PRK12723 flagellar biosynthesi 98.0 2.6E-05 5.7E-10 58.7 6.9 26 16-41 173-198 (388)
217 PRK08533 flagellar accessory p 98.0 2.3E-05 5.1E-10 54.9 6.2 33 17-49 24-61 (230)
218 COG1223 Predicted ATPase (AAA+ 98.0 4.6E-05 1E-09 54.7 7.6 43 16-58 150-194 (368)
219 TIGR00150 HI0065_YjeE ATPase, 98.0 1.1E-05 2.3E-10 52.2 4.1 30 15-44 20-49 (133)
220 PLN02796 D-glycerate 3-kinase 98.0 6.4E-06 1.4E-10 60.9 3.4 38 15-52 98-140 (347)
221 cd03115 SRP The signal recogni 98.0 3.7E-05 8.1E-10 51.2 6.7 31 19-49 2-37 (173)
222 cd00071 GMPK Guanosine monopho 98.0 7.4E-06 1.6E-10 53.0 3.2 23 20-42 2-24 (137)
223 TIGR02655 circ_KaiC circadian 98.0 8.8E-06 1.9E-10 62.8 4.1 86 16-103 262-362 (484)
224 PRK04195 replication factor C 98.0 8.6E-06 1.9E-10 62.7 4.0 32 17-48 39-70 (482)
225 KOG1970|consensus 98.0 1.3E-05 2.7E-10 62.3 4.8 30 18-47 111-140 (634)
226 PRK00080 ruvB Holliday junctio 98.0 8.5E-06 1.8E-10 59.8 3.8 29 17-45 51-79 (328)
227 PF03029 ATP_bind_1: Conserved 98.0 6.1E-06 1.3E-10 58.3 2.8 20 22-41 1-20 (238)
228 PF00931 NB-ARC: NB-ARC domain 97.9 1.8E-05 3.9E-10 56.4 5.2 92 15-114 17-120 (287)
229 TIGR00362 DnaA chromosomal rep 97.9 9.9E-05 2.1E-09 55.7 9.4 38 19-56 138-182 (405)
230 TIGR03877 thermo_KaiC_1 KaiC d 97.9 1.8E-05 4E-10 55.6 5.1 35 16-50 20-59 (237)
231 PRK05703 flhF flagellar biosyn 97.9 8.3E-05 1.8E-09 56.6 9.0 36 15-50 219-261 (424)
232 KOG3308|consensus 97.9 2.2E-05 4.8E-10 54.0 5.3 40 16-55 3-43 (225)
233 PF07724 AAA_2: AAA domain (Cd 97.9 9.3E-06 2E-10 54.6 3.5 27 17-43 3-29 (171)
234 PTZ00361 26 proteosome regulat 97.9 9.2E-06 2E-10 61.9 3.8 31 16-46 216-246 (438)
235 PRK14729 miaA tRNA delta(2)-is 97.9 1.1E-05 2.4E-10 58.7 4.0 32 18-50 5-36 (300)
236 PRK09270 nucleoside triphospha 97.9 1.1E-05 2.4E-10 56.3 3.9 29 14-42 30-58 (229)
237 PRK06067 flagellar accessory p 97.9 9.7E-06 2.1E-10 56.7 3.5 39 16-54 24-67 (234)
238 PRK13342 recombination factor 97.9 9.8E-06 2.1E-10 61.3 3.7 30 18-47 37-66 (413)
239 PF08433 KTI12: Chromatin asso 97.9 1E-05 2.2E-10 58.2 3.5 35 18-52 2-41 (270)
240 TIGR01526 nadR_NMN_Atrans nico 97.9 1.1E-05 2.4E-10 59.3 3.7 30 17-46 162-191 (325)
241 PRK04328 hypothetical protein; 97.9 2.6E-05 5.7E-10 55.3 5.3 35 16-50 22-61 (249)
242 KOG0739|consensus 97.9 2.3E-05 4.9E-10 57.3 4.9 42 18-59 167-210 (439)
243 PF00910 RNA_helicase: RNA hel 97.9 9.8E-06 2.1E-10 50.3 2.7 22 20-41 1-22 (107)
244 TIGR00064 ftsY signal recognit 97.9 0.00011 2.5E-09 52.8 8.5 36 14-49 69-109 (272)
245 PF07726 AAA_3: ATPase family 97.9 5.8E-06 1.3E-10 53.1 1.7 28 19-46 1-28 (131)
246 PRK14088 dnaA chromosomal repl 97.9 9.9E-05 2.1E-09 56.4 8.6 38 19-56 132-176 (440)
247 PF00448 SRP54: SRP54-type pro 97.9 1.3E-05 2.8E-10 55.0 3.5 25 17-41 1-25 (196)
248 COG1126 GlnQ ABC-type polar am 97.9 1.1E-05 2.4E-10 56.2 3.0 25 15-39 26-50 (240)
249 PRK10416 signal recognition pa 97.9 0.00011 2.3E-09 54.1 8.4 27 15-41 112-138 (318)
250 KOG0731|consensus 97.9 9.7E-06 2.1E-10 65.0 3.1 40 17-56 344-385 (774)
251 TIGR03015 pepcterm_ATPase puta 97.9 4.6E-05 9.9E-10 54.0 6.3 26 17-42 43-68 (269)
252 COG0466 Lon ATP-dependent Lon 97.9 1E-05 2.2E-10 64.3 3.2 40 15-54 348-389 (782)
253 PRK00149 dnaA chromosomal repl 97.9 8.2E-05 1.8E-09 56.9 8.0 38 19-56 150-194 (450)
254 KOG0727|consensus 97.9 9.7E-05 2.1E-09 53.0 7.7 47 15-61 187-235 (408)
255 COG1219 ClpX ATP-dependent pro 97.9 1.3E-05 2.8E-10 58.7 3.4 31 16-46 96-126 (408)
256 COG0464 SpoVK ATPases of the A 97.9 1.3E-05 2.8E-10 61.8 3.6 41 16-56 275-317 (494)
257 PRK12402 replication factor C 97.9 2E-05 4.3E-10 57.5 4.4 34 19-52 38-78 (337)
258 PF03215 Rad17: Rad17 cell cyc 97.9 1.5E-05 3.2E-10 62.0 3.9 30 18-47 46-75 (519)
259 PF06309 Torsin: Torsin; Inte 97.9 1.8E-05 4E-10 50.6 3.6 29 12-40 48-76 (127)
260 PRK13341 recombination factor 97.9 0.00014 3E-09 58.8 9.4 33 18-50 53-85 (725)
261 PF13245 AAA_19: Part of AAA d 97.9 1.9E-05 4.2E-10 46.2 3.5 22 18-39 11-33 (76)
262 CHL00176 ftsH cell division pr 97.9 1.5E-05 3.3E-10 63.3 3.9 36 17-52 216-253 (638)
263 TIGR01618 phage_P_loop phage n 97.9 1.9E-05 4.2E-10 55.1 3.9 39 14-54 9-47 (220)
264 COG2255 RuvB Holliday junction 97.8 1.6E-05 3.5E-10 57.4 3.4 28 18-45 53-80 (332)
265 TIGR01243 CDC48 AAA family ATP 97.8 1.5E-05 3.3E-10 64.2 3.7 39 17-55 487-527 (733)
266 TIGR03881 KaiC_arch_4 KaiC dom 97.8 4E-05 8.7E-10 53.3 5.3 35 16-50 19-58 (229)
267 PLN03046 D-glycerate 3-kinase; 97.8 1.6E-05 3.5E-10 60.3 3.4 38 15-52 210-252 (460)
268 PF10662 PduV-EutP: Ethanolami 97.8 1.8E-05 3.9E-10 51.7 3.1 23 18-40 2-24 (143)
269 PF08477 Miro: Miro-like prote 97.8 2.2E-05 4.8E-10 48.8 3.4 23 19-41 1-23 (119)
270 KOG0738|consensus 97.8 1.6E-05 3.4E-10 59.7 3.0 31 19-49 247-277 (491)
271 cd02026 PRK Phosphoribulokinas 97.8 1.4E-05 3.1E-10 57.4 2.8 33 20-52 2-37 (273)
272 TIGR03689 pup_AAA proteasome A 97.8 1.9E-05 4.1E-10 61.3 3.5 27 17-43 216-242 (512)
273 cd02029 PRK_like Phosphoribulo 97.8 1.3E-05 2.9E-10 57.4 2.4 35 19-53 1-40 (277)
274 KOG0651|consensus 97.8 4.4E-05 9.6E-10 55.8 5.0 46 13-58 162-209 (388)
275 TIGR02928 orc1/cdc6 family rep 97.8 7.9E-05 1.7E-09 55.1 6.6 25 16-40 39-63 (365)
276 COG4639 Predicted kinase [Gene 97.8 0.00025 5.3E-09 47.1 8.1 36 18-55 3-38 (168)
277 PRK12422 chromosomal replicati 97.8 0.00035 7.5E-09 53.6 10.0 38 19-56 143-185 (445)
278 TIGR01243 CDC48 AAA family ATP 97.8 2.1E-05 4.6E-10 63.4 3.5 37 16-52 211-249 (733)
279 PLN02318 phosphoribulokinase/u 97.8 2E-05 4.4E-10 62.0 3.2 36 16-51 64-100 (656)
280 KOG0736|consensus 97.8 0.00013 2.8E-09 58.8 7.7 40 18-57 706-747 (953)
281 PRK05416 glmZ(sRNA)-inactivati 97.8 3.6E-05 7.7E-10 55.8 4.3 29 17-46 6-34 (288)
282 PRK08727 hypothetical protein; 97.8 3.9E-05 8.4E-10 53.9 4.4 35 19-53 43-82 (233)
283 COG3839 MalK ABC-type sugar tr 97.8 2.1E-05 4.5E-10 58.1 3.1 32 16-50 28-59 (338)
284 PF00308 Bac_DnaA: Bacterial d 97.8 4.1E-05 8.9E-10 53.3 4.4 39 19-57 36-81 (219)
285 COG0194 Gmk Guanylate kinase [ 97.8 2.6E-05 5.7E-10 53.0 3.3 26 16-41 3-28 (191)
286 PLN03025 replication factor C 97.8 3E-05 6.4E-10 56.8 3.7 24 18-41 35-58 (319)
287 PF13191 AAA_16: AAA ATPase do 97.7 2.6E-05 5.6E-10 51.9 3.0 28 14-41 21-48 (185)
288 KOG0737|consensus 97.7 2.3E-05 4.9E-10 58.2 2.9 43 14-56 124-168 (386)
289 PF00625 Guanylate_kin: Guanyl 97.7 4.2E-05 9E-10 51.6 4.0 25 17-41 2-26 (183)
290 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00023 5.1E-09 49.5 7.8 26 14-39 16-41 (235)
291 PRK14962 DNA polymerase III su 97.7 3.8E-05 8.3E-10 59.2 4.1 26 18-43 37-62 (472)
292 CHL00206 ycf2 Ycf2; Provisiona 97.7 2.7E-05 5.8E-10 67.7 3.4 39 15-53 1628-1668(2281)
293 cd00820 PEPCK_HprK Phosphoenol 97.7 4E-05 8.7E-10 47.8 3.4 22 17-38 15-36 (107)
294 TIGR03499 FlhF flagellar biosy 97.7 5E-05 1.1E-09 54.8 4.3 39 12-50 189-234 (282)
295 cd01120 RecA-like_NTPases RecA 97.7 3.1E-05 6.7E-10 50.1 2.9 35 19-53 1-40 (165)
296 cd01124 KaiC KaiC is a circadi 97.7 1.8E-05 4E-10 53.0 1.9 31 20-50 2-37 (187)
297 KOG2004|consensus 97.7 2.5E-05 5.4E-10 62.4 2.9 41 14-54 435-477 (906)
298 TIGR02655 circ_KaiC circadian 97.7 7.4E-05 1.6E-09 57.7 5.3 40 16-55 20-65 (484)
299 KOG1969|consensus 97.7 4E-05 8.8E-10 61.2 3.9 32 17-48 326-357 (877)
300 TIGR00763 lon ATP-dependent pr 97.7 3.2E-05 7E-10 62.8 3.5 30 17-46 347-376 (775)
301 PF03308 ArgK: ArgK protein; 97.7 3.6E-05 7.8E-10 54.9 3.2 28 14-41 26-53 (266)
302 cd01393 recA_like RecA is a b 97.7 0.00018 3.9E-09 49.8 6.7 26 15-40 17-42 (226)
303 PF13189 Cytidylate_kin2: Cyti 97.7 3.7E-05 8.1E-10 51.9 3.1 38 19-57 1-38 (179)
304 PRK14087 dnaA chromosomal repl 97.7 0.00029 6.3E-09 54.1 8.3 39 19-57 143-188 (450)
305 PRK09435 membrane ATPase/prote 97.7 4.7E-05 1E-09 56.2 3.8 28 14-41 53-80 (332)
306 PRK00411 cdc6 cell division co 97.7 0.00011 2.5E-09 54.8 6.0 26 16-41 54-79 (394)
307 cd01131 PilT Pilus retraction 97.7 4.3E-05 9.3E-10 52.3 3.4 23 19-41 3-25 (198)
308 PF02367 UPF0079: Uncharacteri 97.7 5.8E-05 1.3E-09 48.2 3.7 30 15-44 13-42 (123)
309 COG4619 ABC-type uncharacteriz 97.7 4.5E-05 9.7E-10 51.6 3.3 25 15-39 27-51 (223)
310 PRK14961 DNA polymerase III su 97.7 5E-05 1.1E-09 56.6 3.9 27 17-43 38-64 (363)
311 PRK13695 putative NTPase; Prov 97.7 4.8E-05 1E-09 50.9 3.4 24 18-41 1-24 (174)
312 PF06068 TIP49: TIP49 C-termin 97.7 1.9E-05 4.1E-10 58.9 1.6 40 17-56 50-93 (398)
313 PRK11034 clpA ATP-dependent Cl 97.7 5E-05 1.1E-09 61.5 3.9 33 19-51 490-524 (758)
314 TIGR02688 conserved hypothetic 97.7 8.2E-05 1.8E-09 56.5 4.7 45 12-57 204-252 (449)
315 COG3842 PotA ABC-type spermidi 97.6 3.9E-05 8.5E-10 56.9 3.0 24 16-39 30-53 (352)
316 PRK11331 5-methylcytosine-spec 97.6 8.8E-05 1.9E-09 56.7 4.9 26 17-42 194-219 (459)
317 TIGR00101 ureG urease accessor 97.6 5.9E-05 1.3E-09 51.8 3.7 25 17-41 1-25 (199)
318 KOG3877|consensus 97.6 5.3E-05 1.2E-09 54.7 3.5 42 12-53 66-110 (393)
319 KOG0635|consensus 97.6 5.7E-05 1.2E-09 50.1 3.3 43 14-56 28-74 (207)
320 COG1855 ATPase (PilT family) [ 97.6 4.2E-05 9E-10 58.4 3.0 26 16-41 262-287 (604)
321 KOG0729|consensus 97.6 0.00011 2.3E-09 53.1 4.9 47 16-62 210-258 (435)
322 PRK14722 flhF flagellar biosyn 97.6 6.4E-05 1.4E-09 56.3 3.9 29 12-40 132-160 (374)
323 cd01130 VirB11-like_ATPase Typ 97.6 6.6E-05 1.4E-09 50.9 3.6 26 16-41 24-49 (186)
324 PRK06645 DNA polymerase III su 97.6 6.4E-05 1.4E-09 58.4 3.9 29 17-45 43-71 (507)
325 COG1116 TauB ABC-type nitrate/ 97.6 6.3E-05 1.4E-09 53.2 3.5 24 16-39 28-51 (248)
326 PF13555 AAA_29: P-loop contai 97.6 9.1E-05 2E-09 41.7 3.5 23 17-39 23-45 (62)
327 PF00005 ABC_tran: ABC transpo 97.6 4.6E-05 1E-09 48.6 2.6 26 16-41 10-35 (137)
328 PF01078 Mg_chelatase: Magnesi 97.6 5.8E-05 1.3E-09 52.2 3.2 23 18-40 23-45 (206)
329 PRK10751 molybdopterin-guanine 97.6 6.8E-05 1.5E-09 50.6 3.4 26 16-41 5-30 (173)
330 PTZ00322 6-phosphofructo-2-kin 97.6 0.00015 3.3E-09 58.0 5.9 39 17-55 215-258 (664)
331 COG1124 DppF ABC-type dipeptid 97.6 6.7E-05 1.5E-09 52.9 3.4 24 16-39 32-55 (252)
332 PHA02544 44 clamp loader, smal 97.6 6.9E-05 1.5E-09 54.4 3.7 26 18-43 44-69 (316)
333 TIGR02236 recomb_radA DNA repa 97.6 0.00036 7.8E-09 50.8 7.4 25 16-40 94-118 (310)
334 cd03292 ABC_FtsE_transporter F 97.6 7.2E-05 1.6E-09 51.4 3.5 25 16-40 26-50 (214)
335 TIGR02639 ClpA ATP-dependent C 97.6 6.2E-05 1.3E-09 60.8 3.6 34 19-52 486-521 (731)
336 COG1136 SalX ABC-type antimicr 97.6 7.4E-05 1.6E-09 52.3 3.5 25 15-39 29-53 (226)
337 PRK14956 DNA polymerase III su 97.6 7.8E-05 1.7E-09 57.5 3.9 27 18-44 41-67 (484)
338 PF13479 AAA_24: AAA domain 97.6 5E-05 1.1E-09 52.6 2.7 32 15-49 1-32 (213)
339 COG4240 Predicted kinase [Gene 97.6 8.9E-05 1.9E-09 52.2 3.8 41 15-55 48-94 (300)
340 cd04163 Era Era subfamily. Er 97.6 7E-05 1.5E-09 48.3 3.2 24 17-40 3-26 (168)
341 PRK14974 cell division protein 97.6 7.8E-05 1.7E-09 55.2 3.7 27 15-41 138-164 (336)
342 PF03205 MobB: Molybdopterin g 97.6 7.7E-05 1.7E-09 48.6 3.3 24 18-41 1-24 (140)
343 cd01918 HprK_C HprK/P, the bif 97.6 8.6E-05 1.9E-09 48.9 3.5 32 17-49 14-45 (149)
344 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 7.8E-05 1.7E-09 51.4 3.5 26 16-41 29-54 (218)
345 PRK15455 PrkA family serine pr 97.6 6.8E-05 1.5E-09 59.0 3.5 27 15-41 101-127 (644)
346 PF01926 MMR_HSR1: 50S ribosom 97.6 7.6E-05 1.7E-09 46.4 3.1 21 19-39 1-21 (116)
347 TIGR01166 cbiO cobalt transpor 97.6 8.3E-05 1.8E-09 50.3 3.5 25 16-40 17-41 (190)
348 KOG0743|consensus 97.6 4.9E-05 1.1E-09 57.7 2.6 30 19-48 237-266 (457)
349 PRK09302 circadian clock prote 97.6 0.00011 2.4E-09 56.9 4.6 34 17-50 273-311 (509)
350 TIGR00960 3a0501s02 Type II (G 97.6 8.2E-05 1.8E-09 51.3 3.5 25 16-40 28-52 (216)
351 TIGR00416 sms DNA repair prote 97.6 0.00018 3.8E-09 55.3 5.6 38 17-54 94-136 (454)
352 COG3911 Predicted ATPase [Gene 97.6 8.7E-05 1.9E-09 49.0 3.3 40 18-57 10-50 (183)
353 COG1220 HslU ATP-dependent pro 97.6 8.1E-05 1.7E-09 55.1 3.5 42 16-57 49-105 (444)
354 cd04155 Arl3 Arl3 subfamily. 97.6 8.9E-05 1.9E-09 48.9 3.5 25 16-40 13-37 (173)
355 PRK10787 DNA-binding ATP-depen 97.6 7.2E-05 1.6E-09 60.8 3.5 31 16-46 348-378 (784)
356 TIGR02673 FtsE cell division A 97.6 8.8E-05 1.9E-09 51.0 3.5 26 15-40 26-51 (214)
357 COG1224 TIP49 DNA helicase TIP 97.6 5.9E-05 1.3E-09 56.1 2.7 41 17-57 65-109 (450)
358 PRK14490 putative bifunctional 97.5 8.4E-05 1.8E-09 55.5 3.6 29 14-42 2-30 (369)
359 KOG0989|consensus 97.5 0.00022 4.7E-09 52.1 5.5 41 15-55 55-95 (346)
360 cd03269 ABC_putative_ATPase Th 97.5 9.5E-05 2.1E-09 50.7 3.5 25 16-40 25-49 (210)
361 cd03301 ABC_MalK_N The N-termi 97.5 9.8E-05 2.1E-09 50.7 3.6 26 15-40 24-49 (213)
362 cd03261 ABC_Org_Solvent_Resist 97.5 9.6E-05 2.1E-09 51.6 3.5 25 16-40 25-49 (235)
363 PF04665 Pox_A32: Poxvirus A32 97.5 0.00011 2.4E-09 52.0 3.8 29 12-40 8-36 (241)
364 COG0714 MoxR-like ATPases [Gen 97.5 8.1E-05 1.8E-09 54.7 3.3 29 18-46 44-72 (329)
365 cd03225 ABC_cobalt_CbiO_domain 97.5 0.0001 2.2E-09 50.6 3.5 25 16-40 26-50 (211)
366 cd01121 Sms Sms (bacterial rad 97.5 0.00012 2.6E-09 54.9 4.1 35 17-51 82-121 (372)
367 PRK13541 cytochrome c biogenes 97.5 0.0001 2.3E-09 50.1 3.5 25 16-40 25-49 (195)
368 cd03219 ABC_Mj1267_LivG_branch 97.5 8.9E-05 1.9E-09 51.7 3.3 25 16-40 25-49 (236)
369 cd03263 ABC_subfamily_A The AB 97.5 0.0001 2.2E-09 50.9 3.5 25 16-40 27-51 (220)
370 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00017 3.8E-09 50.0 4.7 36 17-52 16-56 (224)
371 cd03256 ABC_PhnC_transporter A 97.5 0.0001 2.2E-09 51.5 3.5 25 16-40 26-50 (241)
372 COG1703 ArgK Putative periplas 97.5 0.0001 2.2E-09 53.6 3.5 30 12-41 46-75 (323)
373 cd03259 ABC_Carb_Solutes_like 97.5 0.00011 2.3E-09 50.6 3.6 25 16-40 25-49 (213)
374 KOG0991|consensus 97.5 9.1E-05 2E-09 52.5 3.2 28 14-41 45-72 (333)
375 cd01128 rho_factor Transcripti 97.5 0.00012 2.5E-09 52.1 3.8 28 15-42 14-41 (249)
376 cd03224 ABC_TM1139_LivF_branch 97.5 0.0001 2.2E-09 50.9 3.4 25 16-40 25-49 (222)
377 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00011 2.3E-09 50.8 3.5 25 16-40 30-54 (221)
378 TIGR02315 ABC_phnC phosphonate 97.5 0.00011 2.3E-09 51.5 3.5 25 16-40 27-51 (243)
379 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00011 2.4E-09 50.4 3.6 25 16-40 25-49 (213)
380 PRK10733 hflB ATP-dependent me 97.5 9.1E-05 2E-09 59.1 3.5 31 18-48 186-216 (644)
381 cd03258 ABC_MetN_methionine_tr 97.5 0.00011 2.4E-09 51.2 3.6 27 15-41 29-55 (233)
382 PRK04301 radA DNA repair and r 97.5 0.00016 3.5E-09 52.9 4.5 25 16-40 101-125 (317)
383 PRK14964 DNA polymerase III su 97.5 0.00011 2.4E-09 56.8 3.8 28 17-44 35-62 (491)
384 PRK11629 lolD lipoprotein tran 97.5 0.00011 2.4E-09 51.3 3.5 25 16-40 34-58 (233)
385 TIGR03608 L_ocin_972_ABC putat 97.5 0.00011 2.3E-09 50.2 3.4 25 16-40 23-47 (206)
386 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00011 2.4E-09 50.2 3.5 25 16-40 25-49 (205)
387 COG0467 RAD55 RecA-superfamily 97.5 7.1E-05 1.5E-09 53.2 2.6 37 15-51 21-62 (260)
388 cd03260 ABC_PstB_phosphate_tra 97.5 0.00012 2.6E-09 50.8 3.6 26 16-41 25-50 (227)
389 cd03247 ABCC_cytochrome_bd The 97.5 0.00012 2.7E-09 49.0 3.6 25 16-40 27-51 (178)
390 cd03229 ABC_Class3 This class 97.5 0.00013 2.7E-09 49.0 3.6 25 16-40 25-49 (178)
391 cd03235 ABC_Metallic_Cations A 97.5 0.0001 2.3E-09 50.6 3.2 25 16-40 24-48 (213)
392 cd03296 ABC_CysA_sulfate_impor 97.5 0.00012 2.6E-09 51.3 3.5 25 16-40 27-51 (239)
393 cd03264 ABC_drug_resistance_li 97.5 0.00011 2.3E-09 50.5 3.3 22 19-40 27-48 (211)
394 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00012 2.6E-09 51.2 3.6 25 16-40 26-50 (236)
395 COG3172 NadR Predicted ATPase/ 97.5 0.0001 2.2E-09 49.2 2.9 31 13-43 4-34 (187)
396 PRK11823 DNA repair protein Ra 97.5 0.00014 3.1E-09 55.7 4.2 38 17-54 80-122 (446)
397 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00011 2.4E-09 50.8 3.3 25 16-40 29-53 (220)
398 PRK10867 signal recognition pa 97.5 0.00013 2.7E-09 55.8 3.9 35 15-49 98-138 (433)
399 cd00983 recA RecA is a bacter 97.5 0.00096 2.1E-08 49.2 8.3 38 16-53 54-96 (325)
400 cd03265 ABC_DrrA DrrA is the A 97.5 0.00013 2.8E-09 50.5 3.6 25 16-40 25-49 (220)
401 PRK10247 putative ABC transpor 97.5 0.00013 2.8E-09 50.8 3.6 25 16-40 32-56 (225)
402 TIGR00750 lao LAO/AO transport 97.5 0.00013 2.8E-09 53.0 3.8 27 15-41 32-58 (300)
403 PRK14963 DNA polymerase III su 97.5 0.00012 2.6E-09 56.9 3.7 26 18-43 37-62 (504)
404 cd03223 ABCD_peroxisomal_ALDP 97.5 0.00014 3E-09 48.4 3.6 25 16-40 26-50 (166)
405 TIGR02782 TrbB_P P-type conjug 97.5 0.0001 2.2E-09 53.7 3.2 25 17-41 132-156 (299)
406 TIGR01978 sufC FeS assembly AT 97.5 0.00013 2.7E-09 51.1 3.5 26 15-40 24-49 (243)
407 TIGR02323 CP_lyasePhnK phospho 97.5 0.00012 2.6E-09 51.6 3.4 26 16-41 28-53 (253)
408 cd03257 ABC_NikE_OppD_transpor 97.5 0.00013 2.7E-09 50.6 3.4 25 16-40 30-54 (228)
409 PRK14957 DNA polymerase III su 97.5 0.00014 3E-09 57.0 3.9 26 18-43 39-64 (546)
410 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00017 3.7E-09 59.2 4.6 41 14-54 592-638 (852)
411 TIGR03410 urea_trans_UrtE urea 97.5 0.00013 2.8E-09 50.8 3.5 25 16-40 25-49 (230)
412 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00013 2.8E-09 49.3 3.4 26 15-40 23-48 (177)
413 PRK13540 cytochrome c biogenes 97.5 0.00014 3E-09 49.6 3.6 25 16-40 26-50 (200)
414 PRK14242 phosphate transporter 97.5 0.00013 2.8E-09 51.5 3.5 26 15-40 30-55 (253)
415 PRK13851 type IV secretion sys 97.5 0.00011 2.3E-09 54.6 3.2 26 16-41 161-186 (344)
416 PRK11248 tauB taurine transpor 97.5 0.00013 2.9E-09 51.7 3.6 25 16-40 26-50 (255)
417 PRK14250 phosphate ABC transpo 97.5 0.00013 2.9E-09 51.2 3.5 25 16-40 28-52 (241)
418 PRK14955 DNA polymerase III su 97.5 0.00014 3E-09 54.9 3.8 28 17-44 38-65 (397)
419 TIGR02639 ClpA ATP-dependent C 97.5 0.00011 2.4E-09 59.4 3.5 25 17-41 203-227 (731)
420 PRK14960 DNA polymerase III su 97.5 0.00014 3.1E-09 58.0 4.0 28 17-44 37-64 (702)
421 TIGR00073 hypB hydrogenase acc 97.5 0.00014 3.1E-09 50.0 3.6 28 14-41 19-46 (207)
422 cd03232 ABC_PDR_domain2 The pl 97.5 0.00013 2.8E-09 49.6 3.3 25 15-39 31-55 (192)
423 cd03218 ABC_YhbG The ABC trans 97.5 0.00014 3E-09 50.6 3.5 25 16-40 25-49 (232)
424 PRK14247 phosphate ABC transpo 97.5 0.00014 2.9E-09 51.3 3.5 26 15-40 27-52 (250)
425 TIGR01425 SRP54_euk signal rec 97.5 0.0002 4.4E-09 54.6 4.6 35 15-49 98-137 (429)
426 PRK11264 putative amino-acid A 97.5 0.00014 3E-09 51.2 3.6 25 16-40 28-52 (250)
427 PRK11124 artP arginine transpo 97.5 0.00014 3E-09 51.0 3.6 25 16-40 27-51 (242)
428 cd03230 ABC_DR_subfamily_A Thi 97.5 0.00015 3.2E-09 48.5 3.5 25 16-40 25-49 (173)
429 PRK10744 pstB phosphate transp 97.5 0.00014 3E-09 51.7 3.5 25 16-40 38-62 (260)
430 PRK12727 flagellar biosynthesi 97.5 0.00029 6.3E-09 55.0 5.5 29 12-40 345-373 (559)
431 cd01394 radB RadB. The archaea 97.5 0.00016 3.5E-09 49.9 3.8 35 16-50 18-57 (218)
432 smart00173 RAS Ras subfamily o 97.5 0.00014 3.1E-09 47.4 3.3 21 19-39 2-22 (164)
433 TIGR00959 ffh signal recogniti 97.4 0.00015 3.3E-09 55.3 3.9 35 15-49 97-137 (428)
434 TIGR02770 nickel_nikD nickel i 97.4 0.00014 3E-09 50.7 3.4 26 16-41 11-36 (230)
435 COG3638 ABC-type phosphate/pho 97.4 0.00012 2.6E-09 51.6 3.0 77 15-91 28-109 (258)
436 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0001 2.3E-09 49.2 2.6 32 20-51 2-34 (168)
437 PF13086 AAA_11: AAA domain; P 97.4 0.00013 2.8E-09 49.9 3.2 23 19-41 19-41 (236)
438 PF00437 T2SE: Type II/IV secr 97.4 0.00014 3E-09 51.9 3.4 25 17-41 127-151 (270)
439 PRK10584 putative ABC transpor 97.4 0.00015 3.4E-09 50.3 3.6 25 16-40 35-59 (228)
440 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00015 3.4E-09 50.4 3.5 25 16-40 27-51 (234)
441 cd03246 ABCC_Protease_Secretio 97.4 0.00017 3.7E-09 48.2 3.6 25 16-40 27-51 (173)
442 PRK14949 DNA polymerase III su 97.4 0.00015 3.3E-09 59.5 3.9 27 18-44 39-65 (944)
443 COG1122 CbiO ABC-type cobalt t 97.4 0.00014 3.1E-09 51.2 3.4 24 16-39 29-52 (235)
444 TIGR02237 recomb_radB DNA repa 97.4 0.00018 4E-09 49.2 3.8 36 15-50 10-50 (209)
445 cd03266 ABC_NatA_sodium_export 97.4 0.00016 3.5E-09 49.8 3.5 25 16-40 30-54 (218)
446 PRK09302 circadian clock prote 97.4 0.00026 5.5E-09 55.0 5.0 37 16-52 30-72 (509)
447 PRK13764 ATPase; Provisional 97.4 0.00013 2.9E-09 57.6 3.4 27 16-42 256-282 (602)
448 cd03216 ABC_Carb_Monos_I This 97.4 0.00016 3.6E-09 47.9 3.5 25 16-40 25-49 (163)
449 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00016 3.5E-09 47.1 3.3 26 16-41 25-50 (144)
450 PRK14958 DNA polymerase III su 97.4 0.00016 3.5E-09 56.2 3.9 28 17-44 38-65 (509)
451 cd03215 ABC_Carb_Monos_II This 97.4 0.00016 3.4E-09 48.7 3.4 26 16-41 25-50 (182)
452 PLN02772 guanylate kinase 97.4 0.00019 4.2E-09 54.0 4.1 34 8-41 126-159 (398)
453 PRK10908 cell division protein 97.4 0.00016 3.6E-09 50.0 3.6 26 15-40 26-51 (222)
454 PRK14274 phosphate ABC transpo 97.4 0.00016 3.5E-09 51.3 3.6 25 16-40 37-61 (259)
455 TIGR03771 anch_rpt_ABC anchore 97.4 0.00016 3.5E-09 50.2 3.5 25 16-40 5-29 (223)
456 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00017 3.6E-09 49.4 3.5 25 16-40 25-49 (208)
457 PRK11701 phnK phosphonate C-P 97.4 0.00015 3.3E-09 51.3 3.4 25 16-40 31-55 (258)
458 PRK14267 phosphate ABC transpo 97.4 0.00016 3.5E-09 51.0 3.5 25 16-40 29-53 (253)
459 cd04138 H_N_K_Ras_like H-Ras/N 97.4 0.00016 3.5E-09 46.7 3.3 23 18-40 2-24 (162)
460 cd04119 RJL RJL (RabJ-Like) su 97.4 0.00015 3.2E-09 47.2 3.1 23 18-40 1-23 (168)
461 TIGR03005 ectoine_ehuA ectoine 97.4 0.00016 3.5E-09 51.0 3.5 25 16-40 25-49 (252)
462 cd03116 MobB Molybdenum is an 97.4 0.00018 3.9E-09 47.8 3.5 24 18-41 2-25 (159)
463 PRK14255 phosphate ABC transpo 97.4 0.00016 3.6E-09 50.9 3.5 24 16-39 30-53 (252)
464 cd03234 ABCG_White The White s 97.4 0.00016 3.5E-09 50.2 3.4 26 16-41 32-57 (226)
465 PRK13543 cytochrome c biogenes 97.4 0.00017 3.7E-09 49.8 3.5 25 16-40 36-60 (214)
466 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00018 3.8E-09 49.2 3.6 25 16-40 30-54 (204)
467 PRK13648 cbiO cobalt transport 97.4 0.00017 3.6E-09 51.5 3.5 26 15-40 33-58 (269)
468 cd03254 ABCC_Glucan_exporter_l 97.4 0.00017 3.7E-09 50.1 3.5 25 16-40 28-52 (229)
469 smart00175 RAB Rab subfamily o 97.4 0.00016 3.5E-09 47.0 3.2 22 18-39 1-22 (164)
470 cd03214 ABC_Iron-Siderophores_ 97.4 0.00018 4E-09 48.3 3.6 25 16-40 24-48 (180)
471 COG0125 Tmk Thymidylate kinase 97.4 0.00043 9.4E-09 48.0 5.5 55 16-73 2-56 (208)
472 PRK13539 cytochrome c biogenes 97.4 0.00018 3.8E-09 49.4 3.6 26 15-40 26-51 (207)
473 PRK14262 phosphate ABC transpo 97.4 0.00017 3.6E-09 50.8 3.5 24 16-39 28-51 (250)
474 PRK15177 Vi polysaccharide exp 97.4 0.00017 3.7E-09 49.9 3.5 25 16-40 12-36 (213)
475 PRK14251 phosphate ABC transpo 97.4 0.00017 3.7E-09 50.8 3.6 25 16-40 29-53 (251)
476 cd03228 ABCC_MRP_Like The MRP 97.4 0.00019 4.1E-09 47.9 3.6 26 16-41 27-52 (171)
477 PRK10771 thiQ thiamine transpo 97.4 0.00017 3.6E-09 50.3 3.5 25 16-40 24-48 (232)
478 PRK09493 glnQ glutamine ABC tr 97.4 0.00017 3.7E-09 50.5 3.5 25 16-40 26-50 (240)
479 PRK10463 hydrogenase nickel in 97.4 0.00019 4.1E-09 52.1 3.8 27 15-41 102-128 (290)
480 TIGR02525 plasmid_TraJ plasmid 97.4 0.0006 1.3E-08 51.2 6.6 87 19-112 151-242 (372)
481 KOG1533|consensus 97.4 8.2E-05 1.8E-09 52.5 1.8 23 18-40 3-25 (290)
482 TIGR01184 ntrCD nitrate transp 97.4 0.00018 3.8E-09 50.3 3.5 25 16-40 10-34 (230)
483 PRK10646 ADP-binding protein; 97.4 0.00025 5.5E-09 46.9 4.0 29 15-43 26-54 (153)
484 COG0542 clpA ATP-binding subun 97.4 0.00027 5.8E-09 57.2 4.9 45 13-57 516-566 (786)
485 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00018 3.9E-09 49.4 3.5 26 15-40 22-47 (211)
486 PF01443 Viral_helicase1: Vira 97.4 0.00012 2.6E-09 50.7 2.7 22 20-41 1-22 (234)
487 PRK10895 lipopolysaccharide AB 97.4 0.00018 3.8E-09 50.4 3.5 25 16-40 28-52 (241)
488 TIGR00231 small_GTP small GTP- 97.4 0.00018 3.9E-09 45.7 3.3 24 18-41 2-25 (161)
489 PRK11889 flhF flagellar biosyn 97.4 0.00019 4.1E-09 54.3 3.8 35 15-49 239-278 (436)
490 PRK14256 phosphate ABC transpo 97.4 0.00018 3.8E-09 50.8 3.5 26 16-41 29-54 (252)
491 TIGR00176 mobB molybdopterin-g 97.4 0.00016 3.5E-09 47.8 3.1 23 19-41 1-23 (155)
492 PRK14241 phosphate transporter 97.4 0.00017 3.8E-09 51.1 3.5 25 16-40 29-53 (258)
493 COG1120 FepC ABC-type cobalami 97.4 0.00018 3.9E-09 51.4 3.5 25 16-40 27-51 (258)
494 TIGR02324 CP_lyasePhnL phospho 97.4 0.00019 4E-09 49.7 3.5 27 15-41 32-58 (224)
495 PRK13538 cytochrome c biogenes 97.4 0.00019 4.1E-09 49.2 3.5 25 16-40 26-50 (204)
496 PRK14969 DNA polymerase III su 97.4 0.00019 4.1E-09 56.1 3.9 27 18-44 39-65 (527)
497 PRK10865 protein disaggregatio 97.4 0.00023 5E-09 58.5 4.6 35 19-53 600-639 (857)
498 TIGR02868 CydC thiol reductant 97.4 0.00015 3.2E-09 56.3 3.3 26 16-41 360-385 (529)
499 PRK04296 thymidine kinase; Pro 97.4 0.00018 3.8E-09 49.0 3.3 25 17-41 2-26 (190)
500 PRK13768 GTPase; Provisional 97.4 0.00018 3.9E-09 51.2 3.5 25 17-41 2-26 (253)
No 1
>PLN02674 adenylate kinase
Probab=99.97 E-value=1.1e-30 Score=183.49 Aligned_cols=102 Identities=58% Similarity=1.048 Sum_probs=97.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~ 96 (119)
..+|+|+|+|||||+|+|+.||++||+.|+|+++++++++..+++.|..+++++.+|.++|++++..++.+++...++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~ 110 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK 110 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred cEEEeCCCCCHHHHHHHHHHhh
Q psy9244 97 GFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 97 g~vldg~P~~~~q~~~l~~~l~ 118 (119)
||||||||||..|++.|++.+.
T Consensus 111 g~ilDGfPRt~~Qa~~l~~~l~ 132 (244)
T PLN02674 111 GFILDGFPRTVVQAQKLDEMLA 132 (244)
T ss_pred cEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 2
>KOG3079|consensus
Probab=99.97 E-value=3.4e-30 Score=171.82 Aligned_cols=107 Identities=39% Similarity=0.632 Sum_probs=101.7
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc-CCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSDELVVDLISNNLD 90 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~ 90 (119)
+.+..+++|||+|+|||||.|+|.+++++|++.|+|++||+|++... +++.|..+++++.+|..+|.+++..+|.+.|.
T Consensus 3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~ 82 (195)
T KOG3079|consen 3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR 82 (195)
T ss_pred CcccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244 91 KPECQNGFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 91 ~~~~~~g~vldg~P~~~~q~~~l~~~l~ 118 (119)
+....++|+||||||+.+|+..|++.++
T Consensus 83 ~~~~~~~fLIDGyPR~~~q~~~fe~~i~ 110 (195)
T KOG3079|consen 83 SSGDSNGFLIDGYPRNVDQLVEFERKIQ 110 (195)
T ss_pred hcCCCCeEEecCCCCChHHHHHHHHHhc
Confidence 9887778999999999999999999875
No 3
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=3.9e-30 Score=169.23 Aligned_cols=96 Identities=54% Similarity=1.013 Sum_probs=89.3
Q ss_pred EEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcEEEe
Q psy9244 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLD 101 (119)
Q Consensus 22 i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~vld 101 (119)
|+|+|||||||+|+.||++||+.|||+++++++++..+++.+..+++++.+|..+|++++.+++..+|.+..+.+|||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild 80 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD 80 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988677899999
Q ss_pred CCCCCHHHHHHHHHHh
Q psy9244 102 GFPRTVPQAEKVYSLM 117 (119)
Q Consensus 102 g~P~~~~q~~~l~~~l 117 (119)
|||||.+|++.|++.+
T Consensus 81 GfPrt~~Qa~~l~~~~ 96 (151)
T PF00406_consen 81 GFPRTLEQAEALEEIL 96 (151)
T ss_dssp SB-SSHHHHHHHHHHH
T ss_pred eccccHHHHHHHHHHH
Confidence 9999999999999854
No 4
>PRK14529 adenylate kinase; Provisional
Probab=99.96 E-value=2.5e-29 Score=174.66 Aligned_cols=100 Identities=44% Similarity=0.827 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|+++|++.|+|.++++++++..+++.+..+++++.+|..+|++++..++.++|.+.+ .+|
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence 3699999999999999999999999999999999999998899999999999999999999999999999999877 789
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||.+||+.|++.++
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~ 100 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQ 100 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999988764
No 5
>PLN02459 probable adenylate kinase
Probab=99.96 E-value=6e-29 Score=175.63 Aligned_cols=100 Identities=48% Similarity=0.776 Sum_probs=94.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC--CC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP--EC 94 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~--~~ 94 (119)
+++|+|+|+|||||||+|+.|+++||+.|+|+++++++++..+++++..++.++.+|.++|++++..++.++|.+. .+
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999875 34
Q ss_pred CCcEEEeCCCCCHHHHHHHHHH
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~~ 116 (119)
..||||||||||.+|++.|++.
T Consensus 109 ~~g~iLDGFPRt~~Qa~~Le~~ 130 (261)
T PLN02459 109 ESGFILDGFPRTVRQAEILEGV 130 (261)
T ss_pred CceEEEeCCCCCHHHHHHHHhc
Confidence 6899999999999999999864
No 6
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.6e-28 Score=165.74 Aligned_cols=101 Identities=46% Similarity=0.830 Sum_probs=97.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|++++++.|+|.+++++......++++..++.++..|.++|++++..++.+++...+|..+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~ 80 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG 80 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999987779
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
||+|||||+..|++.|++.|.
T Consensus 81 ~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 81 FILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred EEEeCCCCcHHHHHHHHHHHH
Confidence 999999999999999999875
No 7
>PRK13808 adenylate kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=178.36 Aligned_cols=101 Identities=54% Similarity=0.948 Sum_probs=96.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|+++||+.|+++++++++++..+++.+..+.+++..|.++|++++..++.++|...++..|
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999888889
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||.+|++.|++.+.
T Consensus 81 ~ILDGFPRt~~QA~~L~~ll~ 101 (333)
T PRK13808 81 FILDGFPRTVPQAEALDALLK 101 (333)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999988764
No 8
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.95 E-value=6.1e-28 Score=168.58 Aligned_cols=101 Identities=35% Similarity=0.758 Sum_probs=94.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC--CC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK--PE 93 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~--~~ 93 (119)
.+++|+|+|+|||||||+|+.||++||+.|+|+++++++++..+++.+..+++++.+|.++|++++..++.+++.+ .+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999998899999999999999999999999999999988 55
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHH
Q psy9244 94 CQNGFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 94 ~~~g~vldg~P~~~~q~~~l~~~ 116 (119)
+..||||||||||..|++.|++.
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~ 107 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKI 107 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhc
Confidence 67899999999999999998763
No 9
>PRK14532 adenylate kinase; Provisional
Probab=99.95 E-value=2e-27 Score=161.14 Aligned_cols=100 Identities=51% Similarity=0.834 Sum_probs=94.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~ 98 (119)
+|+|+|+|||||||+|+.||+++|+.|+|+++++++.+..+++.+..+++++..|..+|++++..++.+++...++..||
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence 69999999999999999999999999999999999999888899999999999999999999999999999888888899
Q ss_pred EEeCCCCCHHHHHHHHHHhh
Q psy9244 99 LLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 99 vldg~P~~~~q~~~l~~~l~ 118 (119)
||||||||.+|++.+++.+.
T Consensus 82 vldg~pr~~~q~~~~~~~l~ 101 (188)
T PRK14532 82 IFDGFPRTVAQAEALDKMLA 101 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999987764
No 10
>PRK14526 adenylate kinase; Provisional
Probab=99.95 E-value=1.8e-27 Score=164.54 Aligned_cols=99 Identities=34% Similarity=0.758 Sum_probs=94.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~ 98 (119)
+|+|+|+|||||||+|+.|++.+++.|+|.+++++++....++.+..++++++.|..+|++++.+++.++|...++..||
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~ 81 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF 81 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence 68999999999999999999999999999999999999989999999999999999999999999999999988778899
Q ss_pred EEeCCCCCHHHHHHHHHHh
Q psy9244 99 LLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 99 vldg~P~~~~q~~~l~~~l 117 (119)
||||||||.+|++.|++.+
T Consensus 82 ilDGfPR~~~Qa~~l~~~~ 100 (211)
T PRK14526 82 ILDGFPRNINQAKALDKFL 100 (211)
T ss_pred EEECCCCCHHHHHHHHHhc
Confidence 9999999999999998764
No 11
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.95 E-value=3e-27 Score=163.07 Aligned_cols=100 Identities=55% Similarity=0.906 Sum_probs=93.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC-CCCc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE-CQNG 97 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~-~~~g 97 (119)
+|+|+|+|||||||+|+.||++||+.|+++++++++++..+++.+..+.+++..|..+|++++.+++.++|.+.+ ...|
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 489999999999999999999999999999999999999889999999999999999999999999999998854 3679
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||.+|++.|++.+.
T Consensus 81 ~ilDGfPrt~~Qa~~l~~~~~ 101 (210)
T TIGR01351 81 FILDGFPRTLSQAEALDALLK 101 (210)
T ss_pred EEEeCCCCCHHHHHHHHHHhc
Confidence 999999999999999988753
No 12
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.95 E-value=5.8e-27 Score=162.16 Aligned_cols=101 Identities=58% Similarity=1.031 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.||++||+.|++++++++++...+++.+..+.+++..|..+|++++..++.+++...++.+|
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence 37999999999999999999999999999999999999998899999999999999999999999999999998877789
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||++.+|++.|++.++
T Consensus 81 ~VlDGfPr~~~qa~~l~~~l~ 101 (215)
T PRK00279 81 FLLDGFPRTIPQAEALDEMLK 101 (215)
T ss_pred EEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999987763
No 13
>PRK14528 adenylate kinase; Provisional
Probab=99.95 E-value=1.1e-26 Score=157.75 Aligned_cols=101 Identities=46% Similarity=0.858 Sum_probs=95.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
.+|+|+|+|||||||+|+.|+++||+.|+++++++++.+..+++.+..+..++..|..+|++++..++.+++.+.++..|
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g 81 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG 81 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||.+|++.|++.+.
T Consensus 82 ~viDG~Pr~~~qa~~l~~~~~ 102 (186)
T PRK14528 82 FLLDGFPRTVEQADALDALLK 102 (186)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999988763
No 14
>PRK14531 adenylate kinase; Provisional
Probab=99.94 E-value=1.3e-26 Score=156.93 Aligned_cols=101 Identities=48% Similarity=0.780 Sum_probs=93.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~ 96 (119)
..+|+|+|+|||||||+|+.||++||+.|+|+++++++++..+++.+..++.++..|..+|++++..++.+++... ...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~ 80 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSG 80 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCC
Confidence 3589999999999999999999999999999999999999988999999999999999999999999999999764 357
Q ss_pred cEEEeCCCCCHHHHHHHHHHhh
Q psy9244 97 GFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 97 g~vldg~P~~~~q~~~l~~~l~ 118 (119)
||||||||||..|++.|++.+.
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~ 102 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLE 102 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988654
No 15
>PRK02496 adk adenylate kinase; Provisional
Probab=99.94 E-value=2.5e-26 Score=155.42 Aligned_cols=101 Identities=47% Similarity=0.816 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
.+|+|+|+|||||||+|+.|+++||+.+++.++++++....+++.+..+..++..|..++++++..++.+++.+.++..|
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g 81 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG 81 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence 57999999999999999999999999999999999999988899999999999999999999999999999998888889
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||..|++.+++.++
T Consensus 82 ~vldGfPr~~~q~~~l~~~~~ 102 (184)
T PRK02496 82 WILDGFPRKVTQAAFLDELLQ 102 (184)
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999987653
No 16
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.94 E-value=6.5e-26 Score=152.91 Aligned_cols=98 Identities=41% Similarity=0.696 Sum_probs=91.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~ 98 (119)
.|+|+|+|||||||+|+.||+++|+.|+|+++++++.+..+++.+..+++++.+|..+|++++.+++.+++.... .++|
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence 379999999999999999999999999999999999998778889999999999999999999999999998765 6799
Q ss_pred EEeCCCCCHHHHHHHHHHh
Q psy9244 99 LLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 99 vldg~P~~~~q~~~l~~~l 117 (119)
||||||+|.+|++.+++.+
T Consensus 80 vlDg~p~~~~q~~~~~~~~ 98 (183)
T TIGR01359 80 LIDGFPRNEENLEAWEKLM 98 (183)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 9999999999999998765
No 17
>PLN02200 adenylate kinase family protein
Probab=99.93 E-value=4.5e-25 Score=154.66 Aligned_cols=104 Identities=38% Similarity=0.655 Sum_probs=94.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP 92 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~ 92 (119)
..+.+.+|+|+|+|||||||+|+.|++++|+.|++.++++++.+...++.+..+.+++..|..+|++++..++.+++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~ 118 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS 118 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 35556789999999999999999999999999999999999999888889999999999999999999999999999865
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 93 ECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 93 ~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+ ..||||||||++.+|+..|++.+
T Consensus 119 ~-~~~~ILDG~Prt~~q~~~l~~~~ 142 (234)
T PLN02200 119 D-NNKFLIDGFPRTEENRIAFERII 142 (234)
T ss_pred C-CCeEEecCCcccHHHHHHHHHHh
Confidence 4 46899999999999999998764
No 18
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.93 E-value=8.3e-25 Score=148.43 Aligned_cols=100 Identities=60% Similarity=1.015 Sum_probs=93.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~ 98 (119)
+|+|+|+|||||||+|+.||++||+.++++++++++.....++.+..+..++..|..++++++..++..+|.......+|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~ 80 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF 80 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence 58999999999999999999999999999999999999888889999999999999999999999999999887666899
Q ss_pred EEeCCCCCHHHHHHHHHHhh
Q psy9244 99 LLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 99 vldg~P~~~~q~~~l~~~l~ 118 (119)
||||||++.+|++.|++.+.
T Consensus 81 vldg~Pr~~~q~~~l~~~~~ 100 (194)
T cd01428 81 ILDGFPRTVDQAEALDELLD 100 (194)
T ss_pred EEeCCCCCHHHHHHHHHHHh
Confidence 99999999999999998763
No 19
>PRK14527 adenylate kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=148.01 Aligned_cols=102 Identities=46% Similarity=0.732 Sum_probs=94.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
++..|+|+|+|||||||+|+.|+++|++.+++.+++++.....+++.+..+..++..|..+|++++..++.+++...++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~- 83 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP- 83 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence 4678999999999999999999999999999999999999988889999999999999999999999999999987665
Q ss_pred CcEEEeCCCCCHHHHHHHHHHhh
Q psy9244 96 NGFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~~l~ 118 (119)
.+|||||||++.+|++.|+..++
T Consensus 84 ~~~VlDGfpr~~~q~~~~~~~~~ 106 (191)
T PRK14527 84 VRVIFDGFPRTLAQAEALDRLLE 106 (191)
T ss_pred CcEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987653
No 20
>KOG3078|consensus
Probab=99.89 E-value=4.7e-23 Score=142.97 Aligned_cols=100 Identities=60% Similarity=1.043 Sum_probs=94.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
++.+++++|+|||||+|+|..+++.|++.|+++++++++.+.+.++++..+++++.+|.++||+++..++..++....|.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999888888887789
Q ss_pred CcEEEeCCCCCHHHHHHHHH
Q psy9244 96 NGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~ 115 (119)
+||++||||||..|++.+.+
T Consensus 94 ~~~ildg~Prt~~qa~~l~~ 113 (235)
T KOG3078|consen 94 KGFILDGFPRTVQQAEELLD 113 (235)
T ss_pred cccccCCCCcchHHHHHHHH
Confidence 99999999999999988654
No 21
>PRK14530 adenylate kinase; Provisional
Probab=99.89 E-value=1.3e-22 Score=140.42 Aligned_cols=96 Identities=42% Similarity=0.711 Sum_probs=82.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH-----hcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-----SSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK 91 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~ 91 (119)
.++|+|+|+|||||||+|+.||++||+.|+++++++++.. ......+. ..+++..|..+|++++..++...+.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999987 22334443 67788999999999999999988865
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHH
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~~ 116 (119)
..||||||||++.+|++.|++.
T Consensus 82 ---~~~~IldG~pr~~~q~~~l~~~ 103 (215)
T PRK14530 82 ---ADGFVLDGYPRNLEQAEYLESI 103 (215)
T ss_pred ---CCCEEEcCCCCCHHHHHHHHHh
Confidence 3589999999999999998764
No 22
>PLN02842 nucleotide kinase
Probab=99.89 E-value=1.4e-22 Score=153.92 Aligned_cols=96 Identities=46% Similarity=0.886 Sum_probs=89.9
Q ss_pred EEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-CCcEE
Q psy9244 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-QNGFL 99 (119)
Q Consensus 21 ~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-~~g~v 99 (119)
+|+|+|||||||+|+.|+++|++.|++++++++.+...+++.|..+++++.+|..+|++++..++.+++.+.++ .+|||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999988664 57999
Q ss_pred EeCCCCCHHHHHHHHHH
Q psy9244 100 LDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 100 ldg~P~~~~q~~~l~~~ 116 (119)
|||||||..|++.|++.
T Consensus 81 LDGfPRt~~Qa~~Le~~ 97 (505)
T PLN02842 81 LDGYPRSFAQAQSLEKL 97 (505)
T ss_pred EeCCCCcHHHHHHHHhc
Confidence 99999999999988753
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.88 E-value=1.3e-21 Score=132.00 Aligned_cols=102 Identities=44% Similarity=0.719 Sum_probs=89.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-EC 94 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~ 94 (119)
+...|+|+|+|||||||+|+.|++++|+.+++.+++++......++.+..+...++.|..+|++.+...+.+++... ..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 34689999999999999999999999999999999999987767778888888999999999999999888888653 34
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+.+||+||||++..|++.+.+.+
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~ 104 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRI 104 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC
Confidence 57999999999999999887643
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.62 E-value=8.7e-15 Score=98.84 Aligned_cols=94 Identities=22% Similarity=0.303 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC-C-----cHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG-S-----NLGKKLKETMDAGKLVSDELVVDLISNNLDK 91 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~ 91 (119)
..|+|+|+|||||||+|+ +++++|+.+++++|++++..... . ..+....+... .+..+.+..++...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence 478999999999999987 78999999999999999987432 1 23444443332 12233444454555554
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
.....+|+||+ ++..|.+.+++.+
T Consensus 78 -~~~~~vvidg~-r~~~e~~~~~~~~ 101 (184)
T PRK01184 78 -KGDEVVVIDGV-RGDAEVEYFRKEF 101 (184)
T ss_pred -cCCCcEEEeCC-CCHHHHHHHHHhC
Confidence 23568999999 8999998887765
No 25
>PRK08356 hypothetical protein; Provisional
Probab=99.57 E-value=6.4e-15 Score=100.61 Aligned_cols=93 Identities=20% Similarity=0.396 Sum_probs=67.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC----C---cHHHH----HHhhhhcCcccCH----HHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG----S---NLGKK----LKETMDAGKLVSD----ELVV 82 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~----~---~~~~~----~~~~~~~g~~~~~----~~~~ 82 (119)
+.|+|+|+|||||||+|+.|+ ++|+.+++.++.++...... . ..+.. ...+++.|..+++ +++.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~ 84 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI 84 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence 578999999999999999996 58999999998665433321 1 11111 2455666777774 6666
Q ss_pred HHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHH
Q psy9244 83 DLISNNLDKPECQNGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 83 ~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~ 115 (119)
+++.+++.. +. .||+||| |+.+|++.|++
T Consensus 85 ~~~~~~~~~--~~-~ividG~-r~~~q~~~l~~ 113 (195)
T PRK08356 85 RLAVDKKRN--CK-NIAIDGV-RSRGEVEAIKR 113 (195)
T ss_pred HHHHHHhcc--CC-eEEEcCc-CCHHHHHHHHh
Confidence 777777743 23 5999999 99999999876
No 26
>PRK08118 topology modulation protein; Reviewed
Probab=99.54 E-value=2.8e-14 Score=95.50 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=52.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
.+|+|+|+|||||||+|+.|++++++.++++|+++... .+..++++....++.+.+.. .+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~----~~ 61 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE----DE 61 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC----CC
Confidence 58999999999999999999999999999999987531 12234455555555554443 36
Q ss_pred EEEeC-CCCCHH
Q psy9244 98 FLLDG-FPRTVP 108 (119)
Q Consensus 98 ~vldg-~P~~~~ 108 (119)
||+|| |+++.+
T Consensus 62 wVidG~~~~~~~ 73 (167)
T PRK08118 62 WIIDGNYGGTMD 73 (167)
T ss_pred EEEeCCcchHHH
Confidence 99999 555553
No 27
>PRK03839 putative kinase; Provisional
Probab=99.42 E-value=6.4e-13 Score=89.47 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=34.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
+|+|+|+|||||||+|+.||+++++.|+++++++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~ 38 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK 38 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc
Confidence 6999999999999999999999999999999988653
No 28
>PRK06217 hypothetical protein; Validated
Probab=99.40 E-value=6.4e-13 Score=89.89 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=52.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
.+|+|+|.|||||||+|+.|++++|+.++++|++++... +.+. +...+.+.....+.+.+.. ..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~---~~~ 66 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP---REG 66 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc---CCC
Confidence 579999999999999999999999999999999886431 1110 1123444445555555532 347
Q ss_pred EEEeCCCCC
Q psy9244 98 FLLDGFPRT 106 (119)
Q Consensus 98 ~vldg~P~~ 106 (119)
|||||++..
T Consensus 67 ~vi~G~~~~ 75 (183)
T PRK06217 67 WVLSGSALG 75 (183)
T ss_pred EEEEccHHH
Confidence 999999754
No 29
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.37 E-value=6.9e-13 Score=83.62 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
+|+|.|+|||||||+|+.|++++|+.++++|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999954
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.36 E-value=3e-12 Score=92.32 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=60.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
+..|+++|+|||||||+|+.|++++ ++.+++.|++.+....... .+.. .+...+.....+.....+...+. .+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g 75 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGE-WGEY--KFTKEKEDLVTKAQEAAALAALK---SG 75 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCc-cccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence 3578899999999999999999999 8999999886554432211 1100 00000111112233334444443 24
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh
Q psy9244 96 NGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~~l 117 (119)
..+|+|+++.+..+.+.+.+.+
T Consensus 76 ~~vIid~~~~~~~~~~~~~~la 97 (300)
T PHA02530 76 KSVIISDTNLNPERRRKWKELA 97 (300)
T ss_pred CeEEEeCCCCCHHHHHHHHHHH
Confidence 6799999999999998887654
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.34 E-value=1.1e-11 Score=83.19 Aligned_cols=89 Identities=17% Similarity=0.296 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
.+|+|+|+|||||||+++.||+.+++.++++|+++.+.... ......+ ..|.....+....++.+ +... .+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~-l~~~---~~ 72 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHE-VAEF---ED 72 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHH-HHhC---CC
Confidence 47999999999999999999999999999999988766432 2222222 22444444444455555 4322 35
Q ss_pred EEE-e--CCCCCHHHHHHHHH
Q psy9244 98 FLL-D--GFPRTVPQAEKVYS 115 (119)
Q Consensus 98 ~vl-d--g~P~~~~q~~~l~~ 115 (119)
||+ + |+|.+.++.+.|.+
T Consensus 73 ~vis~Ggg~~~~~~~~~~l~~ 93 (169)
T PRK13949 73 VVISTGGGAPCFFDNMELMNA 93 (169)
T ss_pred EEEEcCCcccCCHHHHHHHHh
Confidence 777 3 57777777777654
No 32
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.33 E-value=8.8e-12 Score=82.38 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~ 60 (119)
++|.|.|+|||||||+|+.||+++|+.++|.+.++++..++..
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g 43 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG 43 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC
Confidence 3688999999999999999999999999999999999987543
No 33
>PRK07261 topology modulation protein; Provisional
Probab=99.28 E-value=8.3e-12 Score=83.79 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
.+|+|+|+|||||||+|+.|++.+++.+++.|++.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 47999999999999999999999999999998764
No 34
>PRK04182 cytidylate kinase; Provisional
Probab=99.23 E-value=4.7e-11 Score=79.81 Aligned_cols=41 Identities=39% Similarity=0.622 Sum_probs=37.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~ 58 (119)
++|+|+|.+||||||+|+.||+++|+.+++.+++++.....
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~ 41 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE 41 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH
Confidence 36899999999999999999999999999999988887643
No 35
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=1.7e-11 Score=83.95 Aligned_cols=54 Identities=22% Similarity=0.199 Sum_probs=48.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
.+|.|+|++||||||+|+.|++.+|+.++|.|++.++....+++.+..+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg 55 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYG 55 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhC
Confidence 479999999999999999999999999999999999999888888887776664
No 36
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.20 E-value=1.1e-10 Score=77.45 Aligned_cols=40 Identities=38% Similarity=0.613 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+.|+|+|++||||||+|+.|++++|+.+++.+++++....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~ 40 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA 40 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH
Confidence 3689999999999999999999999999999998887654
No 37
>KOG3347|consensus
Probab=99.19 E-value=1.6e-11 Score=80.30 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=38.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+..++|+|+|-||+||||+|++||+.+++.+|.+++++++.-
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~ 46 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN 46 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc
Confidence 455789999999999999999999999999999999998753
No 38
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.18 E-value=5.4e-11 Score=76.83 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=56.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcH----HHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL----GKKLKETMDAGKLVSDELVVDLISNNLDKPEC 94 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~ 94 (119)
.|+++|+|||||||+|+.+++.++..+++.|++.........+. .. ... .-.+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~l~~--- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEE-------RAYQILNAAIRKALRN--- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHH-------HHHHHHHHHHHHHHHT---
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHH-------HHHHHHHHHHHHHHHc---
Confidence 37899999999999999999999999999999877665422110 00 000 0122344455555543
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~~l~ 118 (119)
+..+|+|+.-.+..+.+.+.+.++
T Consensus 70 g~~~vvd~~~~~~~~r~~~~~~~~ 93 (143)
T PF13671_consen 70 GNSVVVDNTNLSREERARLRELAR 93 (143)
T ss_dssp T-EEEEESS--SHHHHHHHHHHHH
T ss_pred CCCceeccCcCCHHHHHHHHHHHH
Confidence 346888876566677666666553
No 39
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.17 E-value=3.7e-11 Score=82.43 Aligned_cols=43 Identities=23% Similarity=0.337 Sum_probs=38.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~ 58 (119)
.+..|+|.|.|||||||+|+.|++++++.++..+|++++.+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~ 44 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP 44 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence 3568999999999999999999999999999999999998764
No 40
>PRK04040 adenylate kinase; Provisional
Probab=99.17 E-value=1.1e-10 Score=79.56 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=38.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSG 59 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~ 59 (119)
+..|+|+|.|||||||+++.|++++ ++.+++.++++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~ 46 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEE 46 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHc
Confidence 4689999999999999999999999 899999999988876543
No 41
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.14 E-value=7.8e-11 Score=79.50 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=46.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
.|.|+|++||||||+++.|++ +|+.++++|++.++....+......+.+.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 52 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFG 52 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcC
Confidence 488999999999999999998 9999999999999999887777777776654
No 42
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.12 E-value=1.4e-10 Score=77.60 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=37.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
..+|+++|++||||||+++.||+.+++.++|+|.++.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g 42 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG 42 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC
Confidence 35799999999999999999999999999999999988764
No 43
>PRK13948 shikimate kinase; Provisional
Probab=99.12 E-value=4.7e-10 Score=76.12 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+..|+|+|.+||||||+++.||+++|+.++++|.++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~ 49 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT 49 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 45789999999999999999999999999999999887765
No 44
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.12 E-value=9.9e-11 Score=80.00 Aligned_cols=54 Identities=26% Similarity=0.253 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
+..|.|+|++||||||+++.|++ +|+.+++.|++.++....+++....+.+.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 55 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFG 55 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhC
Confidence 35799999999999999999998 9999999999999998877777777766554
No 45
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.11 E-value=4.5e-10 Score=77.25 Aligned_cols=54 Identities=26% Similarity=0.291 Sum_probs=46.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
+..|.|+|.|||||||+|+.+++ +|+.++++|+++++....+++....+.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG 55 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFG 55 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcC
Confidence 46799999999999999999998 9999999999999998877766666655443
No 46
>PRK00625 shikimate kinase; Provisional
Probab=99.11 E-value=9.8e-11 Score=78.83 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
++|+|+|.|||||||+++.||+++++.++++|+++++..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 369999999999999999999999999999999988754
No 47
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.09 E-value=1e-10 Score=75.74 Aligned_cols=35 Identities=43% Similarity=0.513 Sum_probs=31.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~ 53 (119)
.|+|+|+|||||||+|+.|++++|+.+++.+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~ 35 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRT 35 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCH
Confidence 47899999999999999999999999999985433
No 48
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.07 E-value=5.2e-10 Score=76.89 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG 73 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g 73 (119)
..|.|+|++||||||+++.|+. +|+.+++.|++.++....++.....+.+.+..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 4689999999999999999987 899999999999999988887777777766554
No 49
>PRK13947 shikimate kinase; Provisional
Probab=99.07 E-value=2e-09 Score=71.61 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.+|+|+|+|||||||+|+.||+++|+.+++.|.+++..
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~ 39 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM 39 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence 36999999999999999999999999999999987776
No 50
>PRK06762 hypothetical protein; Provisional
Probab=99.04 E-value=3.9e-09 Score=70.03 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~ 55 (119)
+..|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 5678999999999999999999998 67778877766544
No 51
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.04 E-value=3.6e-10 Score=75.04 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=36.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+..|+|+|+|||||||+|+.||+++|+.+++.|++++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~ 43 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA 43 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 35689999999999999999999999999999999887654
No 52
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.02 E-value=3.4e-09 Score=69.18 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+|+|+|+|||||||+|+.|++++|+.+++.++++.....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC
Confidence 489999999999999999999999999999998877653
No 53
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.99 E-value=9.5e-10 Score=74.60 Aligned_cols=52 Identities=29% Similarity=0.311 Sum_probs=44.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
+|+|+|.+||||||+++.|++..++.+++.|++.++....+.+....+.+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~f 52 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHF 52 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHH
Confidence 4899999999999999999998889999999999999987776666555444
No 54
>PRK13946 shikimate kinase; Provisional
Probab=98.98 E-value=5.4e-09 Score=70.79 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=37.8
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+.....|+|+|.+||||||+++.||+++|+.+++.|.++....
T Consensus 7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~ 49 (184)
T PRK13946 7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA 49 (184)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh
Confidence 3355689999999999999999999999999999998776664
No 55
>PLN02422 dephospho-CoA kinase
Probab=98.98 E-value=6.8e-10 Score=77.88 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=44.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
.|.|+|++||||||+++.|+ ++|+.++|.|++.++.+..++.....+.+.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~F 53 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAF 53 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHh
Confidence 68999999999999999998 6899999999999999987776666665544
No 56
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.97 E-value=4.4e-09 Score=74.81 Aligned_cols=28 Identities=32% Similarity=0.564 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+.....++|.||||+||||+|+.+|+.+
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455789999999999999999999864
No 57
>PRK08233 hypothetical protein; Provisional
Probab=98.95 E-value=8.7e-10 Score=73.83 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
+..|+|.|+|||||||+|+.|++.++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57889999999999999999999986
No 58
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.94 E-value=1.5e-09 Score=73.51 Aligned_cols=53 Identities=26% Similarity=0.267 Sum_probs=45.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
+.|.|+|+.||||||+++.|++ +|+.++++|++.++.+..+.+....+.+.+.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG 53 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFG 53 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHG
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcC
Confidence 3689999999999999999988 9999999999999999888877777765544
No 59
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.94 E-value=5.1e-09 Score=74.03 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
..|.|+|+.||||||+++.|.+++|+.+++.|.+.++....+....+.+.+.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~F 54 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARW 54 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHh
Confidence 47899999999999999999998999999999999999887776666665544
No 60
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.93 E-value=6.2e-09 Score=81.01 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=40.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.|.+..+|+|+|.|||||||+++.||+++|+.++++|+.+.+..
T Consensus 2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~ 45 (542)
T PRK14021 2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI 45 (542)
T ss_pred CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH
Confidence 35667889999999999999999999999999999999888775
No 61
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.92 E-value=2.2e-09 Score=74.02 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK 67 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~ 67 (119)
.+..|.|+|++||||||+++.|++++|+.+++.|.+.++.... ......+.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~ 55 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIA 55 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHH
Confidence 3568999999999999999999999999999999999998764 33333343
No 62
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.90 E-value=4.3e-09 Score=73.23 Aligned_cols=38 Identities=37% Similarity=0.468 Sum_probs=35.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
+.|.|.|++||||||+++.|++++++.+++.+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 57999999999999999999999999999999887665
No 63
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.89 E-value=7.9e-09 Score=67.42 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=32.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~ 54 (119)
|+|+|+|||||||+|+.|++.++..+++.|++...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 78999999999999999999999999999887654
No 64
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.89 E-value=2.3e-09 Score=71.69 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
++|+|+|.||+||||+|+.|+ ++|+.++++.+++.+.-
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~ 38 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG 38 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC
Confidence 479999999999999999999 99999999999887753
No 65
>CHL00181 cbbX CbbX; Provisional
Probab=98.89 E-value=8.4e-09 Score=74.52 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---C------ccccchhHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C------VCHLSTGDMLRAEVS 57 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~------~~~is~~~l~~~~~~ 57 (119)
+..+..++|.|+||+||||+|+.+++.+ | +..++.++++.....
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g 108 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG 108 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence 4456789999999999999999998864 1 355677777766543
No 66
>PLN02199 shikimate kinase
Probab=98.87 E-value=1.4e-08 Score=73.35 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=37.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+|+|+|.+||||||+++.||+.+|+.++++|.++++..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~ 141 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM 141 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh
Confidence 4589999999999999999999999999999999998874
No 67
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.86 E-value=3.7e-09 Score=70.49 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+|+|+|.+||||||+|+.||+++|+.+++.|.++....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~ 41 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS 41 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh
Confidence 468999999999999999999999999999998877654
No 68
>PRK06547 hypothetical protein; Provisional
Probab=98.84 E-value=5.1e-09 Score=70.45 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~ 54 (119)
+..+..|+|.|++||||||+|+.|++.+++.+++.|++...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~ 52 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG 52 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence 45567889999999999999999999999999999987643
No 69
>PRK12338 hypothetical protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=72.93 Aligned_cols=42 Identities=26% Similarity=0.320 Sum_probs=37.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
++..|+|.|+|||||||+|+.||+++|+.++..+|.+++...
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~ 44 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR 44 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence 357899999999999999999999999999977888888664
No 70
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.82 E-value=1.5e-08 Score=76.13 Aligned_cols=52 Identities=23% Similarity=0.229 Sum_probs=43.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
.+|.|+|++||||||+|+.|++ +|+.++++|++.++....+......+.+.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~f 53 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAF 53 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHh
Confidence 4799999999999999999987 899999999999998887665555554443
No 71
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.81 E-value=1.1e-08 Score=70.67 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=40.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL 66 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~ 66 (119)
.+..|.|+|++||||||+++.|++ +|+.+++.|.+.++....+......+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~ 53 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGI 53 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHH
Confidence 456789999999999999999986 89999999999988876554443333
No 72
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.79 E-value=2.8e-08 Score=76.53 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
++|+|+|+|||||||+++.||+++|+.++++|+++.+.
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~ 38 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR 38 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH
Confidence 36999999999999999999999999999999988774
No 73
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.79 E-value=2.1e-08 Score=77.34 Aligned_cols=41 Identities=37% Similarity=0.417 Sum_probs=37.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.++..|.|.|++||||||+|+.||+++|+.+++.|++.+..
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 35678999999999999999999999999999999998885
No 74
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.78 E-value=1e-08 Score=70.33 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=42.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
|.|+|++||||||+++.|++ +|+.+++.|++.++....+....+.+.+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~f 51 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLL 51 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHh
Confidence 78999999999999999965 799999999999998887776666665544
No 75
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.78 E-value=4.6e-08 Score=70.60 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=52.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc---------CccccchhHHHHHHHhcCCc-HHHHHHhhhhcCcccCHHH-----
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY---------CVCHLSTGDMLRAEVSSGSN-LGKKLKETMDAGKLVSDEL----- 80 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~---------~~~~is~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~----- 80 (119)
....++|+|+||+||||+|+.+++.+ .+..++.++++......... ....+++ ...|.++.|++
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAYYLYR 135 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechhhhcc
Confidence 34579999999999999998888754 24456666776544322111 1112222 12244444432
Q ss_pred ----------HHHHHHHhhcCCCCCCcEEEeCCCCCHHHH
Q psy9244 81 ----------VVDLISNNLDKPECQNGFLLDGFPRTVPQA 110 (119)
Q Consensus 81 ----------~~~ll~~~l~~~~~~~g~vldg~P~~~~q~ 110 (119)
+...+...|+.......+|+.|++...+..
T Consensus 136 ~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred CCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 123444555543333467778887655544
No 76
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.78 E-value=1.1e-08 Score=58.79 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999984
No 77
>PRK13974 thymidylate kinase; Provisional
Probab=98.77 E-value=1.5e-08 Score=70.07 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=56.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHhcCCcHHHHHHhhhhc--CcccCHHHHHHHH--HHhh-
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVSSGSNLGKKLKETMDA--GKLVSDELVVDLI--SNNL- 89 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~ll--~~~l- 89 (119)
+..|+|.|++||||||+++.|++.+...-... .+.+......+++.|+.+++++.. |...++.....++ ..|.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~ 82 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ 82 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999998774211000 011111112356788889888853 3334444333322 2221
Q ss_pred ------cCCCCCCcEEE-----------eCCCCCHHH--HHHHHHH
Q psy9244 90 ------DKPECQNGFLL-----------DGFPRTVPQ--AEKVYSL 116 (119)
Q Consensus 90 ------~~~~~~~g~vl-----------dg~P~~~~q--~~~l~~~ 116 (119)
...-....+|| +|||++.++ +..+++.
T Consensus 83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~ 128 (212)
T PRK13974 83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESI 128 (212)
T ss_pred HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHH
Confidence 11101223777 899987554 6666553
No 78
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.76 E-value=7.9e-08 Score=67.89 Aligned_cols=32 Identities=44% Similarity=0.463 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM 51 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l 51 (119)
|+|+|.|||||||+|+.|++.+ ++.+++.+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999876 2455665443
No 79
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.75 E-value=1.1e-08 Score=68.70 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+|+|+|++||||||+++.|++.+++.+++.|..+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~ 43 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT 43 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh
Confidence 4579999999999999999999999999999987665443
No 80
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.72 E-value=2.1e-08 Score=69.26 Aligned_cols=39 Identities=41% Similarity=0.538 Sum_probs=36.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
++|.|-||.||||||+|+.||+++|+.|++.+.+.|...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 688999999999999999999999999999999988755
No 81
>PRK13973 thymidylate kinase; Provisional
Probab=98.72 E-value=5e-08 Score=67.53 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=33.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc---Cccccch--------hHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY---CVCHLST--------GDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~---~~~~is~--------~~l~~~~~~ 57 (119)
+.-|+|-|..||||||+++.|++.+ |+.++.+ ++++++.+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc
Confidence 4568899999999999999999998 7777655 777777664
No 82
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.71 E-value=2.3e-08 Score=67.18 Aligned_cols=38 Identities=24% Similarity=0.233 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~ 55 (119)
.+++|+|+||||||++|..++.+++ +.|++......++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e 41 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDE 41 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHH
Confidence 4689999999999999999999876 5677665444443
No 83
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.71 E-value=8.7e-09 Score=68.15 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=30.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
|+|+|++||||||+|+.|++.++..+++.|++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 578999999999999999999999999998874
No 84
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.70 E-value=2.2e-08 Score=70.02 Aligned_cols=39 Identities=46% Similarity=0.617 Sum_probs=35.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
..+|.|.|++||||||+|+.|++++|+.+++.+.+.+..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 368999999999999999999999999999999987763
No 85
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.70 E-value=2.7e-08 Score=72.50 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+.+..+|+|+|+|||||||+++.|++++|+.++++|..+.+..
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~ 172 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA 172 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh
Confidence 456677899999999999999999999999999999998776553
No 86
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.68 E-value=1.1e-07 Score=75.65 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=36.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.++|.|.||+||||||+|+.||+++|+.|++.+++.+..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 558999999999999999999999999999999999886
No 87
>KOG3354|consensus
Probab=98.67 E-value=8.5e-08 Score=63.37 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=34.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~ 54 (119)
.-.|+|+|..||||||+++.|++++++.+++.||+--.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~ 49 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP 49 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH
Confidence 34789999999999999999999999999999987543
No 88
>PRK13975 thymidylate kinase; Provisional
Probab=98.66 E-value=1.5e-07 Score=63.91 Aligned_cols=26 Identities=42% Similarity=0.457 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..|+|.|++||||||+++.|+++++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999999985
No 89
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.65 E-value=4.3e-08 Score=61.75 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~ 41 (119)
|+|.|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 90
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.65 E-value=3e-07 Score=69.52 Aligned_cols=94 Identities=27% Similarity=0.397 Sum_probs=55.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchhHHHHHHHhcCCcHHHHHHhhhhc-Ccc-cCHHHHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GKL-VSDELVVDLISN 87 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~ll~~ 87 (119)
++..++|+|++||||||++..||..+ | +.+++.|. .+.... ..++.+.+. |.. ....... -+.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt-~R~aA~------eQLk~yAe~lgvp~~~~~~~~-~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN-YRIAAI------EQLKRYADTMGMPFYPVKDIK-KFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc-hhhhHH------HHHHHHHHhcCCCeeehHHHH-HHHH
Confidence 35678999999999999999999754 2 33455443 333221 123333222 211 1111122 3344
Q ss_pred hhcCCCCCCcEEEe--CCC-CCHHHHHHHHHHhh
Q psy9244 88 NLDKPECQNGFLLD--GFP-RTVPQAEKVYSLMM 118 (119)
Q Consensus 88 ~l~~~~~~~g~vld--g~P-~~~~q~~~l~~~l~ 118 (119)
.+.. .....+||| |++ ++..|++.|.++++
T Consensus 294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~ 326 (432)
T PRK12724 294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYS 326 (432)
T ss_pred HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence 4443 234579999 875 88999999988764
No 91
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.63 E-value=3.6e-08 Score=67.52 Aligned_cols=40 Identities=23% Similarity=0.393 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLRA 54 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~~ 54 (119)
..|..+++.|+|||||||++..+...+ ++.+|+.|++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 566778888999999999999999886 7888999886443
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.62 E-value=3e-08 Score=62.68 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=27.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDML 52 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~ 52 (119)
|+|+||||+|||++++.+|+.++..+ ++..++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 68999999999999999999988655 5666665
No 93
>PLN02165 adenylate isopentenyltransferase
Probab=98.61 E-value=6.4e-08 Score=71.07 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=35.3
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
....++..|+|+||+|||||++|..||+.++..++|.|.+
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3455566899999999999999999999999999999876
No 94
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.60 E-value=1.5e-08 Score=68.64 Aligned_cols=92 Identities=22% Similarity=0.239 Sum_probs=51.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc----CccccchhHHHHHHHhcCCc----HHHHHHhhhhcCcccCHHH--------H
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY----CVCHLSTGDMLRAEVSSGSN----LGKKLKETMDAGKLVSDEL--------V 81 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~----~~~~is~~~l~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~--------~ 81 (119)
..|+|+||+||||+|+++.|.+.+ ...+.....-.+.....+.. ..+.+....+.|..+.... .
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 468999999999999999999875 22222222222221111111 1244555555555544321 1
Q ss_pred HHHHHHhhcCCCCCCcEEEeCCCCCHHHHHH
Q psy9244 82 VDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112 (119)
Q Consensus 82 ~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~ 112 (119)
...+...+.. ++.+|+|+.|+...+++.
T Consensus 83 ~~~i~~~~~~---~~~~ild~~~~~~~~l~~ 110 (184)
T smart00072 83 KETIRQVAEQ---GKHCLLDIDPQGVKQLRK 110 (184)
T ss_pred HHHHHHHHHc---CCeEEEEECHHHHHHHHH
Confidence 2233444432 457888888777777654
No 95
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.60 E-value=7.8e-07 Score=69.05 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..+..|+++|.|||||||+|+.+++..++.+++.|++
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 35667889999999999999999999999999999876
No 96
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.60 E-value=7e-08 Score=64.75 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc--cccchhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV--CHLSTGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~--~~is~~~l~~~ 54 (119)
+..|+++|+|||||||+|+.|++.++. .+++.|++...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 457999999999999999999998754 45677776654
No 97
>KOG3220|consensus
Probab=98.59 E-value=1.1e-07 Score=65.11 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 77 (119)
..|.++|..+|||||+++.+- .+|+.+|+.|.+.|+....+++-...+.+.+...-+.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~ 60 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLE 60 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeecc
Confidence 467899999999999999985 89999999999999999999998888887776554333
No 98
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.59 E-value=6.1e-08 Score=67.06 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH-HHhcCC--cHHHH---------HHhhhhcCcccCHHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA-EVSSGS--NLGKK---------LKETMDAGKLVSDELVVDLI 85 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~-~~~~~~--~~~~~---------~~~~~~~g~~~~~~~~~~ll 85 (119)
..++|.||+|+|||.+|-.+|+++|..+|+.|.+-.- .+...+ +.... -...+..|. ++.+-..+.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 3578999999999999999999999999999875322 221111 11000 122344455 5666677777
Q ss_pred HHhhcCCCCCCcEEEeCC
Q psy9244 86 SNNLDKPECQNGFLLDGF 103 (119)
Q Consensus 86 ~~~l~~~~~~~g~vldg~ 103 (119)
..++.+.....++||+|=
T Consensus 81 i~~v~~~~~~~~~IlEGG 98 (233)
T PF01745_consen 81 ISEVNSYSAHGGLILEGG 98 (233)
T ss_dssp HHHHHTTTTSSEEEEEE-
T ss_pred HHHHHhccccCceEEeCc
Confidence 778888777789999883
No 99
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.58 E-value=4.9e-07 Score=62.49 Aligned_cols=24 Identities=50% Similarity=0.520 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+-|+++|+|||||||+|+.|++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 458999999999999999999865
No 100
>PHA00729 NTP-binding motif containing protein
Probab=98.58 E-value=2.1e-07 Score=65.05 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.+|+|+|+||+||||+|.+|+++.+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999998764
No 101
>PRK06696 uridine kinase; Validated
Probab=98.57 E-value=5.4e-08 Score=67.77 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=33.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---Cc--cccchhHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---CV--CHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~~--~~is~~~l~~~ 54 (119)
+..+..|.|.|++||||||+|+.|++.+ |. .++++|++...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4567899999999999999999999988 43 44567777643
No 102
>PRK08181 transposase; Validated
Probab=98.56 E-value=4.3e-07 Score=65.17 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=51.4
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHhcC--CcHHHHHHhhhhcCcccCHH------
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSG--SNLGKKLKETMDAGKLVSDE------ 79 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~------ 79 (119)
|.....+++|+|+||+|||++|.+++.. +.+.++++.+++....... ....+.+..+.+...++.||
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence 4556678999999999999999999853 3477889999888765422 22333344433333333333
Q ss_pred ------HHHHHHHHhhcC
Q psy9244 80 ------LVVDLISNNLDK 91 (119)
Q Consensus 80 ------~~~~ll~~~l~~ 91 (119)
.+.+++..+.+.
T Consensus 182 ~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 182 DQAETSVLFELISARYER 199 (269)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 356666666553
No 103
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.3e-07 Score=67.04 Aligned_cols=52 Identities=23% Similarity=0.432 Sum_probs=42.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcCCcHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSGSNLGKKL 66 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~~~~~~~~ 66 (119)
+.|.-|++.||||+|||-+|++.|.+.++.+| .-++|++.++.++..+-..+
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel 236 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL 236 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence 34556999999999999999999999987776 55789999998766554433
No 104
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.54 E-value=5.6e-08 Score=77.85 Aligned_cols=39 Identities=31% Similarity=0.416 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+|.|.|||||||||+|+.||+++|+.|++.+.+.+...
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence 378999999999999999999999999999999888754
No 105
>PLN02748 tRNA dimethylallyltransferase
Probab=98.53 E-value=1.7e-07 Score=71.72 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCCCCCC----CCCCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 3 PLAYPLP----KESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 3 ~~~~~~~----~~~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
+||.|.. ++.-..++..|+|+||+|||||++|..||++++..+|+.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 4 LNPSPGAGEEGSPKQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCCCCCCCCCcccCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 4554443 33444556689999999999999999999999999999975
No 106
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.52 E-value=2.8e-07 Score=60.95 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcEEEe--CC
Q psy9244 26 PGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLD--GF 103 (119)
Q Consensus 26 pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~vld--g~ 103 (119)
|||||||+++.||+.+++.++++|+++.+... ....+.+.. .|...-.+.-.+++.+.+... ..+|-. |.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g--~si~~i~~~---~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG~ 72 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG--MSISEIFAE---EGEEAFRELESEALRELLKEN---NCVIACGGGI 72 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT--SHHHHHHHH---HHHHHHHHHHHHHHHHHHCSS---SEEEEE-TTG
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC--CcHHHHHHc---CChHHHHHHHHHHHHHHhccC---cEEEeCCCCC
Confidence 79999999999999999999999999877754 223332222 122222334444555555443 233323 25
Q ss_pred CCCHHHHHHHH
Q psy9244 104 PRTVPQAEKVY 114 (119)
Q Consensus 104 P~~~~q~~~l~ 114 (119)
+.+.+..+.|.
T Consensus 73 ~~~~~~~~~L~ 83 (158)
T PF01202_consen 73 VLKEENRELLK 83 (158)
T ss_dssp GGSHHHHHHHH
T ss_pred cCcHHHHHHHH
Confidence 55555555544
No 107
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.51 E-value=7.9e-08 Score=65.50 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAE 55 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~ 55 (119)
.|.|.|+|||||||+|+.|++.+ ++.++++|++....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~ 38 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE 38 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence 37899999999999999999998 78899999877543
No 108
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.51 E-value=1.4e-07 Score=63.17 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDM 51 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l 51 (119)
.++..|+|+|++||||||+|+.|++++. ..+++.+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 3456899999999999999999998874 566665443
No 109
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=3.6e-07 Score=63.40 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcc---ccchhHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC---HLSTGDMLRA 54 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~---~is~~~l~~~ 54 (119)
.+...|.|.|++||||||+|+.|++.++.. .|+.|+....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 456788999999999999999999999744 6777776653
No 110
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.49 E-value=1.2e-07 Score=65.13 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLR 53 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~ 53 (119)
+.++..|.|+|++||||||+++.|++.+ .+.+++.|+...
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 3567899999999999999999999987 356677777543
No 111
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.48 E-value=1.9e-07 Score=63.08 Aligned_cols=46 Identities=35% Similarity=0.557 Sum_probs=35.1
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~ 57 (119)
.|-.....++|.|++|+|||++|.+++.+ +.+.+++..+++.....
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 45566789999999999999999999864 45788999999988764
No 112
>PRK06526 transposase; Provisional
Probab=98.46 E-value=4e-07 Score=64.81 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~ 57 (119)
.|-....+++|+||||+|||++|..|+.. +.+.+++..+++.+...
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~ 143 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA 143 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHH
Confidence 56677789999999999999999999765 34566788888777653
No 113
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.45 E-value=2.5e-07 Score=61.29 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
++..|+|+|.|||||||+|+.|.+++ .+.+++.|.+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 36789999999999999999999876 355667655443
No 114
>KOG0733|consensus
Probab=98.44 E-value=1.9e-06 Score=67.50 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=34.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~ 57 (119)
|.-|+++||||||||-+|++.|.+-|+.+|++ .+|+..+..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 45699999999999999999999988877776 467777764
No 115
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.44 E-value=3.2e-07 Score=74.70 Aligned_cols=39 Identities=38% Similarity=0.488 Sum_probs=36.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..|.|.||+||||||+|+.||+++++.|++++.+.|...
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 579999999999999999999999999999999998864
No 116
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=1.4e-06 Score=62.35 Aligned_cols=40 Identities=25% Similarity=0.188 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc------CccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY------CVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~------~~~~is~~~l~~~~~ 56 (119)
...++|+|++|+|||+++.+++..+ .+.+++..+++....
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~ 162 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLK 162 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHH
Confidence 4679999999999999999998753 345777777766543
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.43 E-value=2.3e-07 Score=63.87 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDML 52 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~ 52 (119)
|+.+..|.|+|++||||||+++.|+..++ +.+++.|+..
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 45678899999999999999999998764 5667776653
No 118
>PRK12377 putative replication protein; Provisional
Probab=98.42 E-value=2.6e-06 Score=60.48 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=33.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~ 57 (119)
...++|.|+||+|||++|.+++..+ .+.++++.+++.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence 3578999999999999999999864 3567788888876643
No 119
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.42 E-value=3.9e-07 Score=66.13 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcc-ccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC-HLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~-~is~~~l~~~~~ 56 (119)
+.|..|+|.|++||||||+|..||+++|+. +++ .|.+++..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~ 131 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVM 131 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHH
Confidence 457889999999999999999999999987 456 45555443
No 120
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.42 E-value=3.6e-07 Score=61.16 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
++..|+|+|.|||||||+|+.|+..+ ++.+++.|.+.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 45689999999999999999999876 366777765533
No 121
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=7e-07 Score=56.55 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc--------Cc--cccchhHHHHHHHhcCCcHHHHHHhhhhcCcc--cCHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY--------CV--CHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL--VSDELVVD 83 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~--------~~--~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~ 83 (119)
....++|+|++|+|||++++.+++.+ +. .+++..... ....+...+.+.+..... ...+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 34578999999999999999999865 33 233332211 011122333333322221 23333446
Q ss_pred HHHHhhcCCCCCCcEEEeCC
Q psy9244 84 LISNNLDKPECQNGFLLDGF 103 (119)
Q Consensus 84 ll~~~l~~~~~~~g~vldg~ 103 (119)
.+.+.+.+... .-+|||++
T Consensus 78 ~~~~~l~~~~~-~~lviDe~ 96 (131)
T PF13401_consen 78 LLIDALDRRRV-VLLVIDEA 96 (131)
T ss_dssp HHHHHHHHCTE-EEEEEETT
T ss_pred HHHHHHHhcCC-eEEEEeCh
Confidence 66666665432 46788886
No 122
>PRK09183 transposase/IS protein; Provisional
Probab=98.41 E-value=1.9e-06 Score=61.43 Aligned_cols=44 Identities=30% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAE 55 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~ 55 (119)
.|.....+++|+||||+||||++..|+.. +.+.+++..+++...
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l 145 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL 145 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence 45667788999999999999999999754 245677777777554
No 123
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.40 E-value=3e-07 Score=67.09 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..|+|+||+|||||++|..||++++..+||.|.+
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 45799999999999999999999999999998874
No 124
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.39 E-value=3.3e-06 Score=62.21 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=34.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVS 57 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~ 57 (119)
....++|.|++|+|||+++.++|..+ .+.++++.+++.....
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence 34679999999999999999999863 5778899998876643
No 125
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.39 E-value=2.2e-07 Score=61.49 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+|+|+|+||+||||+++.|++. |+.++ .+..+....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence 6899999999999999999988 87766 555555543
No 126
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=1.1e-07 Score=63.14 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+..++|+|+|+|||||||++..+++.+.-.-++++-++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 4578999999999999999999998765444555555555554
No 127
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.38 E-value=1.6e-06 Score=61.74 Aligned_cols=85 Identities=27% Similarity=0.405 Sum_probs=55.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCC--cHHHHHHh-hhhcCcccCHH--------
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGS--NLGKKLKE-TMDAGKLVSDE-------- 79 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~-------- 79 (119)
....+++.|+||+|||++|.+|+.+. .+.++++.+++.+...... .....+.. +.....++.||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~ 183 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ 183 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCH
Confidence 56789999999999999999998763 4667899999998876433 23333443 43444444443
Q ss_pred ----HHHHHHHHhhcCCCCCCcEEEeCC
Q psy9244 80 ----LVVDLISNNLDKPECQNGFLLDGF 103 (119)
Q Consensus 80 ----~~~~ll~~~l~~~~~~~g~vldg~ 103 (119)
.+.++|..+..... .++...+
T Consensus 184 ~~~~~~~q~I~~r~~~~~---~~~tsN~ 208 (254)
T COG1484 184 EEADLLFQLISRRYESRS---LIITSNL 208 (254)
T ss_pred HHHHHHHHHHHHHHhhcc---ceeecCC
Confidence 34556666665532 2444444
No 128
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.37 E-value=4.1e-06 Score=54.96 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDML 52 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~ 52 (119)
|+|+|.|||||||+|+.|++.+ + +.+++.+.+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 7899999999999999999987 4 4455555443
No 129
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=4.9e-07 Score=63.16 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
...+++.||||+||||+|..+|++++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 357999999999999999999999876553
No 130
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.35 E-value=5e-07 Score=56.63 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..+++|+|||||||||+++.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 457999999999999999999987643
No 131
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=2.4e-06 Score=57.17 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSS 58 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~ 58 (119)
..+++++|-||+||||+++...+.+ +..+++.++++-+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k 46 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKK 46 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHH
Confidence 4688999999999999999999988 77889999998776653
No 132
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.33 E-value=4.3e-07 Score=61.36 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE 55 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~ 55 (119)
.|.|.|+|||||||+|+.|++.+ ++.+++.|++.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 37899999999999999999985 56789999988744
No 133
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.33 E-value=5e-07 Score=61.57 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999886
No 134
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.32 E-value=7.6e-07 Score=60.90 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML 52 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~ 52 (119)
.++.++..|+|+|.+||||||+++.|+..+ +..+++.+++.
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 567788899999999999999999999875 35666665554
No 135
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.32 E-value=1.4e-05 Score=53.93 Aligned_cols=40 Identities=35% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
-.++..|+|+|+|||||||+++.|+..+ ++.+++.+++-+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~ 59 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH 59 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence 3556789999999999999999999875 255667665443
No 136
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=4.8e-06 Score=53.09 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC----ccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC----VCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~----~~~is~~~l~~~~ 55 (119)
...++|.|+.||||||+++.+++.+. +.+++.++.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~ 44 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR 44 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH
Confidence 35789999999999999999998764 7888887765533
No 137
>PLN02840 tRNA dimethylallyltransferase
Probab=98.31 E-value=7.4e-07 Score=67.36 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
.-.+...|+|+||+||||||+|..|+++++..+|+.|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 33444579999999999999999999999988888876
No 138
>KOG0744|consensus
Probab=98.31 E-value=4.8e-07 Score=66.25 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcc-----------ccchhHHHHHHHhcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVC-----------HLSTGDMLRAEVSSG 59 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~-----------~is~~~l~~~~~~~~ 59 (119)
..|++.||||.|||++|++||+++.+. -++...++.....+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence 468899999999999999999986432 345566666666543
No 139
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.31 E-value=4.1e-06 Score=59.77 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
...++|.|+||+|||++|+.+++.+|..++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999998876655
No 140
>PRK07667 uridine kinase; Provisional
Probab=98.31 E-value=6.4e-07 Score=61.12 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=32.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~ 55 (119)
....|.|.|++||||||+|+.|++.+ +..+++.|+.....
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 34788999999999999999999875 35688998876543
No 141
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.29 E-value=7.6e-07 Score=60.04 Aligned_cols=35 Identities=29% Similarity=0.450 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..++|+|++||||||+++.|+..++..+++.+++
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 45789999999999999999999998888887765
No 142
>PF05729 NACHT: NACHT domain
Probab=98.29 E-value=1.6e-06 Score=56.59 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+|+||+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999764
No 143
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.29 E-value=4.3e-06 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=23.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
|+|.|++||||||+++.|++.+++.++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 789999999999999999998776544
No 144
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=4.5e-06 Score=59.83 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~ 56 (119)
.-++|.|++|+|||++|.+++..+ .+.+++..+++....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 358999999999999999999863 456778888887654
No 145
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.28 E-value=7.3e-07 Score=67.39 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
.+.+|+|+||||+|||++|++||+.+++.++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 34689999999999999999999999888777763
No 146
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.28 E-value=5.7e-07 Score=61.29 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=29.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~ 53 (119)
.|.|+|++||||||+++.|+..+ ++.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 37899999999999999999886 477888887654
No 147
>PLN02924 thymidylate kinase
Probab=98.28 E-value=2.1e-06 Score=59.89 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=41.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCccc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 76 (119)
++++..|+|.|..||||||+++.|++.+....+++ ...++ -...+..|+.+++++..+..+
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~ 73 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQL 73 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCC
Confidence 45567899999999999999999999886544433 11111 112456677777776654433
No 148
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=7.1e-06 Score=51.84 Aligned_cols=25 Identities=44% Similarity=0.684 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...++|+|+||+|||++++.+++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 149
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.27 E-value=7.3e-07 Score=64.47 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=29.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
|+|+||+|||||++|..|+++++..+||+|.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence 7999999999999999999999999999986
No 150
>PTZ00301 uridine kinase; Provisional
Probab=98.27 E-value=7.5e-07 Score=61.75 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDMLR 53 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~~ 53 (119)
...|.|.|+|||||||+|+.|+++++ +..++.|+..+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 36789999999999999999987652 33566676554
No 151
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.27 E-value=8.5e-07 Score=57.06 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
.|+|+|+||+|||++++.+|+.++..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 389999999999999999999987554
No 152
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.26 E-value=1.3e-06 Score=59.50 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..|+|.|+.||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999976
No 153
>PRK05439 pantothenate kinase; Provisional
Probab=98.26 E-value=8.4e-07 Score=64.80 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=33.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDMLR 53 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~~ 53 (119)
....+..|.|.|+|||||||+|+.|++.++ +.++++|++..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 456678999999999999999999998542 56778888764
No 154
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.26 E-value=4.6e-06 Score=57.62 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
.....++|+|++||||||+|+.+++.. .+.+++..++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 345679999999999999999998764 356777776653
No 155
>KOG0735|consensus
Probab=98.25 E-value=1.5e-05 Score=63.56 Aligned_cols=99 Identities=21% Similarity=0.351 Sum_probs=67.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHHhcCCcHHHHHHhhhhc--------------------
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEVSSGSNLGKKLKETMDA-------------------- 72 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~~~~~~~~~~~~~~~~~-------------------- 72 (119)
+....|++.||||+|||.+|.++|...++.+||+. +++..++..... -+++.+..
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq---~vR~lF~rA~~a~PCiLFFDEfdSiAPk 775 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ---NVRDLFERAQSAKPCILFFDEFDSIAPK 775 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH---HHHHHHHHhhccCCeEEEeccccccCcc
Confidence 34457999999999999999999999999998874 788887753211 11111111
Q ss_pred ----CcccCHHHHHHHHHHhhcCCC-------------------------CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 73 ----GKLVSDELVVDLISNNLDKPE-------------------------CQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 73 ----g~~~~~~~~~~ll~~~l~~~~-------------------------~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
..-+.|++++++|.+ |+..+ .-...|+.++|...+..+.|+..-
T Consensus 776 RGhDsTGVTDRVVNQlLTe-lDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 776 RGHDSTGVTDRVVNQLLTE-LDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred cCCCCCCchHHHHHHHHHh-hccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 112556777776654 43321 113668889999998888887654
No 156
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.25 E-value=1e-06 Score=66.62 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
+.+|+|+||||+|||++|+.||+.+++.++.++.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5789999999999999999999999887776653
No 157
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.24 E-value=1.8e-06 Score=65.91 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc-chhHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAE 55 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i-s~~~l~~~~ 55 (119)
.++..|++.|++||||||+|..||.++++.++ +. |.+++.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~ 293 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREV 293 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHH
Confidence 45788999999999999999999999999855 55 444443
No 158
>COG0645 Predicted kinase [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=53.93 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
-+++.|.|||||||+|+.+++.++..+|+.|++.+.+..
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g 41 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG 41 (170)
T ss_pred EEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC
Confidence 468899999999999999999999999999998887765
No 159
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=1.7e-06 Score=60.52 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~ 53 (119)
..++|.|++||||||+++.+++..+..+++.+++..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 458999999999999999999999988998865443
No 160
>PRK15453 phosphoribulokinase; Provisional
Probab=98.23 E-value=1.1e-06 Score=63.32 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML 52 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~ 52 (119)
++++.|.|+|.|||||||+|+.|++.++ ..+++.|+.-
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 4667899999999999999999998663 4556666544
No 161
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.23 E-value=1.5e-06 Score=68.22 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc------cccchhHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV------CHLSTGDM 51 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~------~~is~~~l 51 (119)
..+.+..|+|+|.|||||||+|+.|+++++. .+++.|.+
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3445668999999999999999999999885 77777655
No 162
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=98.22 E-value=1.9e-06 Score=60.13 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+.|.|+|.|||||||+|+.+.+......+++++-+++.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHHH
Confidence 3689999999999999999876544444999998887664
No 163
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.22 E-value=1.4e-06 Score=58.37 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++|+|++||||||+++.|+..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 164
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.22 E-value=1.1e-06 Score=66.27 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
.-+....+|+|+|++|||||||++.|++.||...
T Consensus 214 vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 214 VRPFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred HhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 4566778999999999999999999999988764
No 165
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=1.3e-06 Score=59.18 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
+..++|+||+||||||+++.|+..++..++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 3578999999999999999999876644333
No 166
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.6e-06 Score=58.49 Aligned_cols=45 Identities=31% Similarity=0.385 Sum_probs=33.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDMLRAEVS 57 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~~~~~~ 57 (119)
-...++..|+++|.+||||||+|.+|.+++ | ..+++ +|-+|.-+.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD-GDnvR~gL~ 67 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVRHGLN 67 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec-ChhHhhccc
Confidence 345667899999999999999999999875 3 33444 455565554
No 167
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.20 E-value=1.3e-06 Score=59.17 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
+..|+|.|++||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
No 168
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.19 E-value=1.5e-06 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..|+|+||+||||||+++.|++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999987643
No 169
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.19 E-value=3.4e-05 Score=53.94 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhc---------CCcHHHHHHhhhhcCcccCH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSS---------GSNLGKKLKETMDAGKLVSD 78 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~---------~~~~~~~~~~~~~~g~~~~~ 78 (119)
+......|+++|.|+.|||++|++|++.+ ...++++++.-|..... ....+..+++. +-.
T Consensus 8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~------~a~ 81 (222)
T PF01591_consen 8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQ------IAK 81 (222)
T ss_dssp -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHH------HHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHH------HHH
Confidence 44566789999999999999999999864 46789999998887754 12222222221 112
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 79 ~~~~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l~ 118 (119)
..+.+++. .|.+. .+..-|+|+--.|.+.-+.+.+.++
T Consensus 82 ~~l~dl~~-~l~~~-~G~VAI~DATN~T~~RR~~l~~~~~ 119 (222)
T PF01591_consen 82 EALEDLIE-WLQEE-GGQVAIFDATNSTRERRKMLVERFK 119 (222)
T ss_dssp HHHHHHHH-HHHTS---SEEEEES---SHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHhcC-CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 23333333 34422 3467899998888888777776654
No 170
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.18 E-value=1.2e-06 Score=61.11 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=27.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML 52 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~ 52 (119)
|.|.|++||||||+|+.|+..+. +.++++|+..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 67999999999999999998762 4567777764
No 171
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.16 E-value=1.8e-06 Score=64.41 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=34.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLRAEVS 57 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~~~~~ 57 (119)
+.|..+.|.||||+|||.+|+++|+++|+.+ ++.++|+.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 4567788999999999999999999998664 577777765543
No 172
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.16 E-value=2e-06 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.|+|.|++||||||+++.|++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999987
No 173
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.15 E-value=2.4e-06 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
+|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 174
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.14 E-value=2.7e-06 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
++..|+|+|++||||||+++.|+..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999998874
No 175
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.14 E-value=3e-06 Score=58.43 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..|..+..|+|+||+||||||+++.|.+.
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 55667888999999999999999999764
No 176
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.13 E-value=3.4e-06 Score=56.93 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~ 55 (119)
..|+|.|++.|||||+|+.|.+.+. +.|+++|.++...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~ 41 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM 41 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence 4789999999999999999999884 5688999888753
No 177
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.13 E-value=1.2e-06 Score=58.32 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=26.3
Q ss_pred EcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 23 LGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 23 ~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+|++||||||+++.|+..++..+++.|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999999988654
No 178
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.1e-06 Score=61.64 Aligned_cols=36 Identities=28% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
.+..|+|+||.+||||.+|-.||+++|..+||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 356789999999999999999999999999999874
No 179
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.13 E-value=2.4e-06 Score=65.96 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
.+.-|++.||||+|||++|+++|..+++.++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 345699999999999999999999998776543
No 180
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.12 E-value=2.2e-06 Score=62.07 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML 52 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~ 52 (119)
.+.+..|.|.|++||||||+|+.|+..+. +.+++.|+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45678899999999999999998866542 4566777654
No 181
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.12 E-value=6e-06 Score=60.28 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=53.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhc--CCcHHHHHHhhhhcCcccCH-----------
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSS--GSNLGKKLKETMDAGKLVSD----------- 78 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~----------- 78 (119)
...++|.|++|+|||+++.+++..+ .+.++++.+++.+.... .....+.+..+.+...++.|
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence 4579999999999999999999874 35677888887776542 22334445544444433333
Q ss_pred --HHHHHHHHHhhcCCCCCCcEEEeCCC
Q psy9244 79 --ELVVDLISNNLDKPECQNGFLLDGFP 104 (119)
Q Consensus 79 --~~~~~ll~~~l~~~~~~~g~vldg~P 104 (119)
+++..++..|+.+. ..-++-..|+
T Consensus 236 ~~~ll~~Il~~R~~~~--~~ti~TSNl~ 261 (306)
T PRK08939 236 RDEVLGVILQYRMQEE--LPTFFTSNFD 261 (306)
T ss_pred HHHHHHHHHHHHHHCC--CeEEEECCCC
Confidence 23444566676442 2345555564
No 182
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.12 E-value=2.3e-06 Score=64.25 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~~~ 55 (119)
+..|+|.||||+|||++|+++|.+.+..+ ++..++....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence 45799999999999999999999887554 4555665443
No 183
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.11 E-value=2.8e-06 Score=63.57 Aligned_cols=32 Identities=38% Similarity=0.452 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.....++.||||+||||+|+.||+..+..+..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~ 78 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEA 78 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence 34578999999999999999999987765543
No 184
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.11 E-value=3.4e-06 Score=58.24 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
...|+|-|+.|+||||+|++||++++..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 467999999999999999999999986554
No 185
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.11 E-value=7.9e-06 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.|+|-|.-||||||+++.|+++++..++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 3789999999999999999999876544
No 186
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=2.6e-05 Score=61.57 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV 56 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~ 56 (119)
++|.|++|+|||+|+++++... .+.|++..+++.+..
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 8999999999999999999853 467889988876654
No 187
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.10 E-value=6.2e-06 Score=58.42 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~ 56 (119)
..++|.|+||+|||+++.+++..+ .+.++++.+++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 468999999999999999999865 456778888886554
No 188
>PRK07429 phosphoribulokinase; Provisional
Probab=98.09 E-value=3.8e-06 Score=61.84 Aligned_cols=39 Identities=26% Similarity=0.159 Sum_probs=32.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDML 52 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~ 52 (119)
..++..|.|+|++||||||+++.|+..++ ..+++.|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 45678999999999999999999999876 5567777763
No 189
>KOG0733|consensus
Probab=98.09 E-value=2.5e-06 Score=66.91 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
+.-|+|.||||||||.+|+++|.++++.++++.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~is 255 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS 255 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence 445899999999999999999999999887653
No 190
>PRK06620 hypothetical protein; Validated
Probab=98.09 E-value=3.3e-06 Score=58.62 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
..++|.|||||||||+++++++..+..+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~ 75 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch
Confidence 4689999999999999999998877655553
No 191
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.08 E-value=3.6e-06 Score=62.50 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
....++|+|||||||||+|++|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456899999999999999999998754
No 192
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.08 E-value=4e-06 Score=63.51 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
...++|+||||||||++|+.||+.++..++.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 45799999999999999999999988766644
No 193
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.08 E-value=4e-06 Score=62.36 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~ 54 (119)
+..++|.||||+|||++|++++..++..++ +..++...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 456999999999999999999998876554 33445443
No 194
>PRK06761 hypothetical protein; Provisional
Probab=98.08 E-value=3.5e-06 Score=60.82 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..|+|.|+|||||||+++.|+++++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999998764
No 195
>KOG0730|consensus
Probab=98.08 E-value=2.2e-05 Score=61.84 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=34.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVS 57 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~ 57 (119)
.++..|++.||||||||++|+++|..-++.++++ .+++..+..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG 510 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG 510 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC
Confidence 4456799999999999999999999887777665 456655543
No 196
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.06 E-value=7.9e-06 Score=54.86 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=23.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC--ccccch
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC--VCHLST 48 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~--~~~is~ 48 (119)
++|+|++|||||++|..++...+ ..|++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 78999999999999999998754 445544
No 197
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.06 E-value=6.7e-06 Score=57.14 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
...++|+|++|||||++|+.++... .+.+++..++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 3468999999999999999999865 677777766543
No 198
>PRK06893 DNA replication initiation factor; Validated
Probab=98.06 E-value=5e-06 Score=58.18 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG 49 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~ 49 (119)
+.++|.|+||+||||++++++..+ ++.++++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 458999999999999999999764 66777765
No 199
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.05 E-value=5.2e-06 Score=56.51 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..|+|+||+||||||+++.|.+++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46679999999999999999998875
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.05 E-value=4.4e-06 Score=64.50 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR 53 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~ 53 (119)
+..++|.||||+|||++|+++|...++.++ +..++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 456999999999999999999999876655 4444443
No 201
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.05 E-value=4.8e-06 Score=58.50 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~ 50 (119)
..++|+||+|+||||++++++.... +.++++++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4789999999999999999997643 56777765
No 202
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.05 E-value=4.8e-06 Score=62.82 Aligned_cols=39 Identities=23% Similarity=0.444 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRA 54 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~ 54 (119)
.+..++|.||||+|||++|+++|...+..++.+ .++...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k 218 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK 218 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence 456799999999999999999999887665543 344443
No 203
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.04 E-value=3.8e-06 Score=61.67 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..|+|.|+||+||||+++.+|+++|+.++
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 46999999999999999999999987665
No 204
>PLN02348 phosphoribulokinase
Probab=98.03 E-value=5.1e-06 Score=62.32 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.++..|.|.|++||||||+|+.|++.++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4667889999999999999999999885
No 205
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.03 E-value=6.3e-06 Score=59.57 Aligned_cols=29 Identities=38% Similarity=0.517 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
.+..++|+||||+|||++|+.+|+.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999988644
No 206
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.03 E-value=3.2e-06 Score=62.49 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=29.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC------ccccchhHHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDMLR 53 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~------~~~is~~~l~~ 53 (119)
++|+|+|||||||+++.|++.+. +.+++.||++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 68999999999999999987654 55899999884
No 207
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.02 E-value=6.8e-06 Score=57.07 Aligned_cols=87 Identities=26% Similarity=0.346 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH------cCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcc--------------
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK------YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL-------------- 75 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~------~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~-------------- 75 (119)
++..++|.|+||||||++|..++.+ .++.+++.++-.++....-...+-.+.++...|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 4567899999999999999987632 34667776544433333211222233333333221
Q ss_pred cCHHHHHHHHHHhhcCCCCCCcEEEeCC
Q psy9244 76 VSDELVVDLISNNLDKPECQNGFLLDGF 103 (119)
Q Consensus 76 ~~~~~~~~ll~~~l~~~~~~~g~vldg~ 103 (119)
...+.+...+.+.++.... ..+|||++
T Consensus 98 ~~~~~l~~~i~~~i~~~~~-~~vVIDsl 124 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKP-DRVVIDSL 124 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTS-SEEEEETH
T ss_pred cCHHHHHHHHHHHHHhcCC-CEEEEECH
Confidence 1123334445555554433 68999985
No 208
>KOG0734|consensus
Probab=98.02 E-value=2.8e-05 Score=60.48 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
-|.-|+++||||.|||-+|+++|-+-++.++..
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 345699999999999999999999988887744
No 209
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=2.7e-06 Score=55.77 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=27.7
Q ss_pred EcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 23 LGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 23 ~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
+|..||||||+++.||+++|+.+++-|++-
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH 30 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH 30 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccC
Confidence 489999999999999999999999988864
No 210
>PHA02244 ATPase-like protein
Probab=98.02 E-value=4.8e-06 Score=62.14 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~ 53 (119)
....|+|.|+||+|||++|+.++..++..++.+..+..
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d 155 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD 155 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH
Confidence 34569999999999999999999999988887765543
No 211
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=9.5e-06 Score=57.62 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
.+.|..|+|-|.||+||||+|.-+|.++|+.++--.|.+++...
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR 129 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR 129 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence 45678889999999999999999999999998755566666554
No 212
>PRK05642 DNA replication initiation factor; Validated
Probab=98.01 E-value=1.1e-05 Score=56.74 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRA 54 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~ 54 (119)
..++|.|++|+|||+++++++.. ..+.+++.++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 45889999999999999999753 46778899887753
No 213
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.01 E-value=3.9e-05 Score=61.01 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
+.++..|+++|.|||||||+|+.|++++ ++.+++.|++-.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 3457889999999999999999999986 356778766544
No 214
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.00 E-value=1.7e-05 Score=60.57 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG 49 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~ 49 (119)
+..+..|+++|++||||||+|..||..+ .+.+++.|
T Consensus 92 ~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 92 PLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3567889999999999999999998764 24445554
No 215
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.99 E-value=5.8e-06 Score=62.57 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..+|+|+||||||||++|+.||+.+++.+.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 358999999999999999999999876654
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=2.6e-05 Score=58.68 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..|+++|++|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999764
No 217
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.99 E-value=2.3e-05 Score=54.94 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~ 49 (119)
...++|.|+||+||||+|..++.. .+..+++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 448999999999999998665442 245556544
No 218
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.98 E-value=4.6e-05 Score=54.72 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=34.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSS 58 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~ 58 (119)
-|.+|++.||||+|||.+|++||.+.+..++ ...+|+-+....
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 4678999999999999999999999876655 455677776654
No 219
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.98 E-value=1.1e-05 Score=52.24 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+....|+|.|+.|+||||+++.+++.+++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999998864
No 220
>PLN02796 D-glycerate 3-kinase
Probab=97.98 E-value=6.4e-06 Score=60.93 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML 52 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~ 52 (119)
..+..|.|.|++||||||+++.|+..+. ...+++|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4568899999999999999999998763 4556776654
No 221
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.97 E-value=3.7e-05 Score=51.21 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG 49 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~---~--~~~is~~ 49 (119)
.++++|+|||||||++..++..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999998764 3 4456655
No 222
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.96 E-value=7.4e-06 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~ 42 (119)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999998753
No 223
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.96 E-value=8.8e-06 Score=62.76 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcc----------cCHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL----------VSDEL 80 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~ 80 (119)
+...++|.|+||+||||++..++... .+.|++.++-..+....-..++-.+.++...|.+ .+++.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 44578999999999999999998743 3677776655444443322233233444444422 12444
Q ss_pred HHHHHHHhhcCCCCCCcEEEeCC
Q psy9244 81 VVDLISNNLDKPECQNGFLLDGF 103 (119)
Q Consensus 81 ~~~ll~~~l~~~~~~~g~vldg~ 103 (119)
+.. +.+.+.+.. .+.+|||++
T Consensus 342 ~~~-i~~~i~~~~-~~~vvIDsi 362 (484)
T TIGR02655 342 LQI-IKSEIADFK-PARIAIDSL 362 (484)
T ss_pred HHH-HHHHHHHcC-CCEEEEcCH
Confidence 444 445554433 357899987
No 224
>PRK04195 replication factor C large subunit; Provisional
Probab=97.96 E-value=8.6e-06 Score=62.75 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
+..++|.||||+||||+|+.+|+.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999998666543
No 225
>KOG1970|consensus
Probab=97.96 E-value=1.3e-05 Score=62.25 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..++|+||+||||||..+.|++++|+.++-
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 466899999999999999999999987663
No 226
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.96 E-value=8.5e-06 Score=59.77 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
+..++|.||||+|||++|+.+|+.++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 45689999999999999999999987644
No 227
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.96 E-value=6.1e-06 Score=58.25 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEcCCCCCHHHHHHHHHhHc
Q psy9244 22 LLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 22 i~G~pGsGKstla~~la~~~ 41 (119)
|+||+||||||+|+.+.+.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999865
No 228
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.95 E-value=1.8e-05 Score=56.45 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=50.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH--c----C-ccccchhHHHHHHHhcCCcHHHHHHhhhhcC-----cccCHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK--Y----C-VCHLSTGDMLRAEVSSGSNLGKKLKETMDAG-----KLVSDELVV 82 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~--~----~-~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~ 82 (119)
.....|.|+|++|+||||+|..+++. . + +..++.+.-. ........+...+... .....+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 91 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP-----SLEQLLEQILRQLGEPDSSISDPKDIEELQ 91 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S-----CCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence 45678899999999999999999976 1 1 2223322100 0011112222222222 223445567
Q ss_pred HHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHH
Q psy9244 83 DLISNNLDKPECQNGFLLDGFPRTVPQAEKVY 114 (119)
Q Consensus 83 ~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~ 114 (119)
+.+.+.+... ..-+|||+. .+..+++.+.
T Consensus 92 ~~l~~~L~~~--~~LlVlDdv-~~~~~~~~l~ 120 (287)
T PF00931_consen 92 DQLRELLKDK--RCLLVLDDV-WDEEDLEELR 120 (287)
T ss_dssp HHHHHHHCCT--SEEEEEEEE--SHHHH----
T ss_pred ccchhhhccc--cceeeeeee-cccccccccc
Confidence 7778888765 458899998 4555554443
No 229
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.95 E-value=9.9e-05 Score=55.65 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=30.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV 56 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~ 56 (119)
.++|.|++|+|||+++++++..+ .+.+++..++..+..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~ 182 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV 182 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence 47999999999999999998753 356788887765543
No 230
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.95 E-value=1.8e-05 Score=55.56 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH---c--CccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK---Y--CVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~---~--~~~~is~~~ 50 (119)
++..++|.|+||||||++|..++.. . .+.+++.++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4668999999999999999877643 1 366776554
No 231
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.95 E-value=8.3e-05 Score=56.60 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-------CccccchhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGD 50 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~ 50 (119)
..+.+++|+||+|+||||++..||..+ .+.+++.|.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 335689999999999999988887543 355666665
No 232
>KOG3308|consensus
Probab=97.95 E-value=2.2e-05 Score=53.98 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=33.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~ 55 (119)
+...|.|.|.+.|||||||+.|.+.+ |+..|+-||+.+..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~ 43 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPE 43 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCch
Confidence 34677889999999999999999988 78889988887554
No 233
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.95 E-value=9.3e-06 Score=54.58 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
...++++||+|+|||.+|+.||+.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999998774
No 234
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.95 E-value=9.2e-06 Score=61.95 Aligned_cols=31 Identities=35% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.+..++|.||||+|||++|+++|...+..++
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 4457999999999999999999998876554
No 235
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.94 E-value=1.1e-05 Score=58.74 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
..|+|+||.|||||.+|-.||++ +..+||.|.
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS 36 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS 36 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence 47999999999999999999999 458888876
No 236
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.94 E-value=1.1e-05 Score=56.32 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++..|.|.|++||||||+++.|+..+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678899999999999999999998753
No 237
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.93 E-value=9.7e-06 Score=56.66 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRA 54 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~ 54 (119)
.+..++|.|+||||||++|..++.. ..+.+++.++-.++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS 67 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence 3557888999999999999999654 24666766543333
No 238
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.93 E-value=9.8e-06 Score=61.30 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..++|+||||+||||+|+.+++..+..++.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~ 66 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEA 66 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 478999999999999999999987655543
No 239
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.92 E-value=1e-05 Score=58.16 Aligned_cols=35 Identities=34% Similarity=0.283 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML 52 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~ 52 (119)
+-|+|+|.|||||||+|+.|++.+ .+.+++.+++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~ 41 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG 41 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 468999999999999999999863 45667755554
No 240
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.91 E-value=1.1e-05 Score=59.30 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..+|+|+|++||||||+++.|+..++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 568999999999999999999999887664
No 241
>PRK04328 hypothetical protein; Provisional
Probab=97.91 E-value=2.6e-05 Score=55.27 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~ 50 (119)
++..++|.|+||||||++|..++.. ..+.+++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 4668899999999999999887654 2356676643
No 242
>KOG0739|consensus
Probab=97.90 E-value=2.3e-05 Score=57.25 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=34.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSG 59 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~ 59 (119)
.-|++.||||.|||.+|++.|.+-+..++ |..||+.....+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 35899999999999999999998875554 6678888877543
No 243
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.90 E-value=9.8e-06 Score=50.26 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~ 41 (119)
|+|.|+||+|||++|+.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998754
No 244
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.89 E-value=0.00011 Score=52.78 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG 49 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~ 49 (119)
..++..|.++|++|+||||++..||..+ | +.+++.|
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3456788899999999999999998754 3 4445554
No 245
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.89 E-value=5.8e-06 Score=53.10 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
+++|.|+||+|||++++.+|+..+..+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCcee
Confidence 4789999999999999999998876554
No 246
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=9.9e-05 Score=56.42 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=31.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV 56 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~ 56 (119)
.++|.|++|+|||+++++++..+ .+.+++..+++.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~ 176 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV 176 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 49999999999999999999863 467788888776654
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=1.3e-05 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
|..|+++||+|+||||.+.+||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999999999765
No 248
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=56.15 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.++..++|+||+||||||+.+.|..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999999974
No 249
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.89 E-value=0.00011 Score=54.08 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..|.|+||+||||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999998764
No 250
>KOG0731|consensus
Probab=97.88 E-value=9.7e-06 Score=65.03 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=32.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~ 56 (119)
|.-++|+||||+|||-+|+++|.+-|++++++ .+++.-..
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 44689999999999999999999999988865 45554443
No 251
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.88 E-value=4.6e-05 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
...++|+|++||||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44689999999999999999998764
No 252
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=1e-05 Score=64.31 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=32.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRA 54 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~ 54 (119)
-++++++++||||+|||++++.+|+.+| ++.+|++-+-.+
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE 389 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE 389 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH
Confidence 4567999999999999999999999986 555677776444
No 253
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.88 E-value=8.2e-05 Score=56.88 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV 56 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~ 56 (119)
.++|.|++|+|||+++++++.+. .+.+++..++..+..
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~ 194 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV 194 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 48999999999999999999864 255778877765543
No 254
>KOG0727|consensus
Probab=97.88 E-value=9.7e-05 Score=52.99 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=36.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcCCc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSGSN 61 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~~~ 61 (119)
..|.-+++.||||+|||.++++.|......+| .-+++++.++.++..
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegpr 235 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPR 235 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcH
Confidence 34556899999999999999999987755554 456788888876543
No 255
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.3e-05 Score=58.75 Aligned_cols=31 Identities=39% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..-+|+++||.|||||.+|+.||+.+++++-
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa 126 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFA 126 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 3458999999999999999999999887765
No 256
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.3e-05 Score=61.79 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEV 56 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~ 56 (119)
.+..+++.||||+|||.+|+++|...+..+++++ +++...+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v 317 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV 317 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence 3447999999999999999999997777666543 4544433
No 257
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.87 E-value=2e-05 Score=57.52 Aligned_cols=34 Identities=26% Similarity=0.591 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML 52 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~ 52 (119)
.++|.||||+||||+|+.+++.+. +.+++..++.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 589999999999999999998763 3456665543
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.87 E-value=1.5e-05 Score=62.01 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..++|+||+||||||..+.||+++|+.+..
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 367889999999999999999999876653
No 259
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.87 E-value=1.8e-05 Score=50.61 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+-|++|+.+.+.|++|+|||.+++.||+.
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999986
No 260
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.87 E-value=0.00014 Score=58.77 Aligned_cols=33 Identities=36% Similarity=0.445 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
..++|.||||+||||+|+.+++..+..++.++.
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 478999999999999999999988766655544
No 261
>PF13245 AAA_19: Part of AAA domain
Probab=97.87 E-value=1.9e-05 Score=46.19 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCCHHHH-HHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQ-APLFAK 39 (119)
Q Consensus 18 ~~i~i~G~pGsGKstl-a~~la~ 39 (119)
..++|.|+||||||++ +..++.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 3466799999999954 444443
No 262
>CHL00176 ftsH cell division protein; Validated
Probab=97.86 E-value=1.5e-05 Score=63.31 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccc--hhHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS--TGDML 52 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is--~~~l~ 52 (119)
+..++|.||||+|||++|+++|.+.++.++. ..++.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 4569999999999999999999998866654 44443
No 263
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.85 E-value=1.9e-05 Score=55.11 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~ 54 (119)
.+.+..++|.|+||+||||+|+.++. ...+++.+.....
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~ 47 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKV 47 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchh
Confidence 44467799999999999999999973 3556666654333
No 264
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.85 E-value=1.6e-05 Score=57.38 Aligned_cols=28 Identities=39% Similarity=0.599 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
-++++.||||-||||+|..+|.++|...
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 4799999999999999999999987653
No 265
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.84 E-value=1.5e-05 Score=64.22 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccc--hhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS--TGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is--~~~l~~~~ 55 (119)
+..|+|.||||||||++|+++|...+..+++ ..+++...
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 4568999999999999999999998766654 44555443
No 266
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.84 E-value=4e-05 Score=53.26 Aligned_cols=35 Identities=31% Similarity=0.375 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~ 50 (119)
.+..++|.|+||+|||+++..++.. .++.+++..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4568899999999999999887642 1355666543
No 267
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.83 E-value=1.6e-05 Score=60.28 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML 52 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~ 52 (119)
..+..|.|.|++||||||+++.|...+ ....|++|++.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 356889999999999999999997654 25567777765
No 268
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.82 E-value=1.8e-05 Score=51.71 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+|+|+.|||||||+++|...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999764
No 269
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.82 E-value=2.2e-05 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
+|+|+|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998654
No 270
>KOG0738|consensus
Probab=97.81 E-value=1.6e-05 Score=59.67 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=27.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
-|+++||||+|||-+|+++|.+.+..++++.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 4899999999999999999999997777554
No 271
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.81 E-value=1.4e-05 Score=57.41 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc---CccccchhHHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDML 52 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~ 52 (119)
|.|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 7899999999999999999765 45577777653
No 272
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=1.9e-05 Score=61.28 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
+..++|.||||+|||++|+++|..++.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 456999999999999999999998643
No 273
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.80 E-value=1.3e-05 Score=57.45 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=28.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~ 53 (119)
.|.|+|++||||||+++++++.++ +.+++.|+.-+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 378999999999999999998663 45677776655
No 274
>KOG0651|consensus
Probab=97.80 E-value=4.4e-05 Score=55.84 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=36.9
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhc
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSS 58 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~ 58 (119)
-.+.|..++|.||||.|||.+|++++...|+.++ +.+.++...+.+
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE 209 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE 209 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence 3455677899999999999999999999987654 667777776643
No 275
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.80 E-value=7.9e-05 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..++|.|+||+|||++++.+++.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999865
No 276
>COG4639 Predicted kinase [General function prediction only]
Probab=97.80 E-value=0.00025 Score=47.06 Aligned_cols=36 Identities=31% Similarity=0.205 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.-+++.|.|||||||+|+..- .....++++++-...
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l 38 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL 38 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh
Confidence 357899999999999998632 367888888875544
No 277
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.00035 Score=53.59 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=30.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV 56 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~ 56 (119)
-++|.|++|+||||++++++..+ .+.+++.+++.....
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~ 185 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV 185 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH
Confidence 48999999999999999999753 456778777665443
No 278
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.78 E-value=2.1e-05 Score=63.40 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~ 52 (119)
.+..++|.||||+|||++++++|..++..++ +..+++
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~ 249 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM 249 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh
Confidence 3457999999999999999999999876554 434443
No 279
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.78 E-value=2e-05 Score=62.04 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDM 51 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l 51 (119)
....|.|.|++||||||+|+.|+..+ +...+++|+.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 45688999999999999999999887 4557777765
No 280
>KOG0736|consensus
Probab=97.78 E-value=0.00013 Score=58.83 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEVS 57 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~~ 57 (119)
--|++.||||+|||-+|+++|.++++.++|+. +|+.-++.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG 747 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG 747 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence 35999999999999999999999999998874 67776664
No 281
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.77 E-value=3.6e-05 Score=55.83 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
...|+|+|++||||||+++.|++ .|+..+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 45799999999999999999964 465554
No 282
>PRK08727 hypothetical protein; Validated
Probab=97.77 E-value=3.9e-05 Score=53.86 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=27.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~ 53 (119)
-++|.|++|+|||+++++++.. +.+.++++.++..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~ 82 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG 82 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence 3899999999999999998654 2346777766553
No 283
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.77 E-value=2.1e-05 Score=58.10 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
.+..++|+||+||||||+.+.|| |+.-.+-++
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~ 59 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE 59 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence 45678999999999999999999 444444433
No 284
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.77 E-value=4.1e-05 Score=53.33 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=31.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhH-------cCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKK-------YCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~-------~~~~~is~~~l~~~~~~ 57 (119)
-++|.|++|+|||++.++++.+ ..+.|++..++......
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~ 81 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD 81 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence 4799999999999999999864 24678888888776543
No 285
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=2.6e-05 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..++|+||+|+||||++++|-+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 56789999999999999999998764
No 286
>PLN03025 replication factor C subunit; Provisional
Probab=97.76 E-value=3e-05 Score=56.75 Aligned_cols=24 Identities=46% Similarity=0.693 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+.++|.||||+||||+|+.+|+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999886
No 287
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.75 E-value=2.6e-05 Score=51.94 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=18.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+..++|+|++|+|||++.+.+.+.+
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445789999999999999999887654
No 288
>KOG0737|consensus
Probab=97.74 E-value=2.3e-05 Score=58.17 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEV 56 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~ 56 (119)
-..+..|++.||||+|||-+|+++|++-|..++++ +.+....+
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 34566799999999999999999999998877654 45555544
No 289
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.74 E-value=4.2e-05 Score=51.60 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..|+|+||+||||+|+++.|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998764
No 290
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.73 E-value=0.00023 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
......+.|.|+||||||++|..++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~ 41 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAV 41 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999999974
No 291
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=3.8e-05 Score=59.15 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..++++||||+||||+|+.+|+.+++
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45899999999999999999998765
No 292
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.73 E-value=2.7e-05 Score=67.66 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR 53 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~ 53 (119)
..+.-|+++||||+|||.+|+++|.+.++.++ +..+++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 44567999999999999999999999887665 6667774
No 293
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.72 E-value=4e-05 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFA 38 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la 38 (119)
...+.|.|++||||||+++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999987
No 294
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.72 E-value=5e-05 Score=54.82 Aligned_cols=39 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-------CccccchhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGD 50 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~ 50 (119)
++...+..|+|+||+||||||++..|+..+ .+.+++.|.
T Consensus 189 ~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 189 EILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 344467789999999999999999998644 244566664
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.71 E-value=3.1e-05 Score=50.15 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
.++|+|+||+||||++..++... .+.+++.+....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 36899999999999999998764 355666654433
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.71 E-value=1.8e-05 Score=52.99 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=24.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD 50 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~-----~~~~is~~~ 50 (119)
++|.|+||+|||+++..++... .+.++++++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 7899999999999999886542 466777643
No 297
>KOG2004|consensus
Probab=97.71 E-value=2.5e-05 Score=62.35 Aligned_cols=41 Identities=29% Similarity=0.454 Sum_probs=33.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~ 54 (119)
.-.+.+++++||||+|||.+++.+|+.+| +..+|++-+-..
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv 477 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV 477 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH
Confidence 34578999999999999999999999987 455677765443
No 298
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.70 E-value=7.4e-05 Score=57.71 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh----Hc--CccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK----KY--CVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~----~~--~~~~is~~~l~~~~ 55 (119)
+...++|.|+||||||++|..++. ++ .+.+++..+-..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l 65 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI 65 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH
Confidence 456789999999999999999843 22 46677665433333
No 299
>KOG1969|consensus
Probab=97.70 E-value=4e-05 Score=61.25 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
....+++||||.||||+|+.+|+.-|+.++.+
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 34678999999999999999999988888755
No 300
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=3.2e-05 Score=62.76 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
+..++++||||+|||++|+.||+.++..++
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 347999999999999999999999875554
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.69 E-value=3.6e-05 Score=54.86 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..+|-|+|+||+||||+...|...|
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3467899999999999999999998764
No 302
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.69 E-value=0.00018 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+.|.|+||||||++|..++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 34668899999999999999999754
No 303
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.69 E-value=3.7e-05 Score=51.89 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=29.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
+|.|.+..|||++++|+.||+++|+.+++- +++.+...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~ 38 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAK 38 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHH
Confidence 478999999999999999999999999998 77777664
No 304
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00029 Score=54.06 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhH-------cCccccchhHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKK-------YCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~-------~~~~~is~~~l~~~~~~ 57 (119)
.++|.|++|+|||+++++++.. ..+.+++..+++.....
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~ 188 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD 188 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 3899999999999999999873 34568888888777553
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.69 E-value=4.7e-05 Score=56.23 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999887654
No 306
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.68 E-value=0.00011 Score=54.79 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..++|+|+||+|||++++.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999998754
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.68 E-value=4.3e-05 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.|+|+||+||||||+...+...+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999887765
No 308
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.68 E-value=5.8e-05 Score=48.17 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+....|++.|.-||||||+++.+++.+|+.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 345689999999999999999999988764
No 309
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.68 E-value=4.5e-05 Score=51.57 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+++..|.|+||+||||||+.+.+|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 3467899999999999999999985
No 310
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=5e-05 Score=56.59 Aligned_cols=27 Identities=37% Similarity=0.366 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
+..++|+||+|+||||+|+.+|+.+++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 345799999999999999999998764
No 311
>PRK13695 putative NTPase; Provisional
Probab=97.67 E-value=4.8e-05 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987654
No 312
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.67 E-value=1.9e-05 Score=58.89 Aligned_cols=40 Identities=35% Similarity=0.590 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC--c--cccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC--V--CHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~--~--~~is~~~l~~~~~ 56 (119)
+..|+|.||||+|||.+|-.+|+++| + ..++..++...+.
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 46799999999999999999999986 3 3455555554443
No 313
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.65 E-value=5e-05 Score=61.51 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDM 51 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l 51 (119)
.++|+||||+|||++|+.||+.++..++ ++.+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 6899999999999999999999875554 44443
No 314
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.65 E-value=8.2e-05 Score=56.55 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=37.3
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH----cCccccchhHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK----YCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~----~~~~~is~~~l~~~~~~ 57 (119)
+|-....+++++||+|+|||+++..++.. .| .++++.+|+.+...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~ 252 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST 252 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence 45667789999999999999999998776 24 77888888888765
No 315
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.65 E-value=3.9e-05 Score=56.94 Aligned_cols=24 Identities=42% Similarity=0.599 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
++..+.|+||+||||||+.+.||-
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446788999999999999999993
No 316
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.65 E-value=8.8e-05 Score=56.75 Aligned_cols=26 Identities=42% Similarity=0.488 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
...|++.|+||+|||++|+.+|..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 317
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.65 E-value=5.9e-05 Score=51.83 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
|.+|.|+|++||||||+.+.+...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999988764
No 318
>KOG3877|consensus
Probab=97.65 E-value=5.3e-05 Score=54.69 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=35.7
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccc---hhHHHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS---TGDMLR 53 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is---~~~l~~ 53 (119)
.|..++..|++-|+.|||||++|+.||+++|+.|+- +|++.-
T Consensus 66 rf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 66 RFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred hhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 567778899999999999999999999999988874 555543
No 319
>KOG0635|consensus
Probab=97.64 E-value=5.7e-05 Score=50.06 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---C-ccccchhHHHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C-VCHLSTGDMLRAEV 56 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~-~~~is~~~l~~~~~ 56 (119)
-.++..|+|+|.+||||||+|.+|.+.+ | ..|+--+|-++.-+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 3456789999999999999999999864 2 33433344444433
No 320
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.64 E-value=4.2e-05 Score=58.44 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..-|+|.|+||+||||+|++||+-|
T Consensus 262 raeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 262 RAEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hhcceEEecCCCCChhHHHHHHHHHH
Confidence 44569999999999999999999866
No 321
>KOG0729|consensus
Probab=97.63 E-value=0.00011 Score=53.13 Aligned_cols=47 Identities=26% Similarity=0.534 Sum_probs=37.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHhcCCcH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVSSGSNL 62 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~~~~~~ 62 (119)
.|.-|++.||||+|||.+|++.|.+.+..+|.+ ++|++.+..++...
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarm 258 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM 258 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHH
Confidence 345689999999999999999999998777644 57888887665443
No 322
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=6.4e-05 Score=56.31 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+......++|+||+|+||||++.+|+..
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34556778999999999999999999875
No 323
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.63 E-value=6.6e-05 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
....++|+|++||||||+.+.|+...
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998754
No 324
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=6.4e-05 Score=58.40 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
+..++++||+|+||||+|+.+|+.+++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 45689999999999999999999987753
No 325
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=6.3e-05 Score=53.18 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||+||||||+-+.+|-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999994
No 326
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.62 E-value=9.1e-05 Score=41.68 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+.||||||+..++.-
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999988863
No 327
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=4.6e-05 Score=48.64 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45689999999999999999998654
No 328
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.61 E-value=5.8e-05 Score=52.17 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+++.|+||+|||++|+.+..-
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHC
T ss_pred CCeEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
No 329
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=6.8e-05 Score=50.56 Aligned_cols=26 Identities=15% Similarity=-0.003 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|++||||||+++.|...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 34578999999999999999998665
No 330
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.60 E-value=0.00015 Score=58.00 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~ 55 (119)
...++++|.||+||||+|+.|++.++ ..+++.++.-+..
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~ 258 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRL 258 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhh
Confidence 45789999999999999999999874 4445555544444
No 331
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.60 E-value=6.7e-05 Score=52.95 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
++.++-|+|++||||||+++.|+-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 456889999999999999999984
No 332
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=6.9e-05 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..+++.|+||+||||+++.+++.++.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~ 69 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGA 69 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence 34556899999999999999988754
No 333
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.60 E-value=0.00036 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+.|.|+||||||++|..++..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999855
No 334
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.59 E-value=7.2e-05 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999965
No 335
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.59 E-value=6.2e-05 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=27.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcc--ccchhHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVC--HLSTGDML 52 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~--~is~~~l~ 52 (119)
.++++||+|+|||++|+.||+.++.. .++++++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~ 521 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM 521 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence 57899999999999999999998654 44555543
No 336
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=7.4e-05 Score=52.34 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+++..+.|+||+||||||+...++-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999984
No 337
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=7.8e-05 Score=57.46 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
..++|+||+|+||||+|+.+|+.+++.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 358999999999999999999998764
No 338
>PF13479 AAA_24: AAA domain
Probab=97.59 E-value=5e-05 Score=52.58 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
+++.+++|.|+||+||||+|..+- +..+|+++
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~~---k~l~id~E 32 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASLP---KPLFIDTE 32 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhCC---CeEEEEeC
Confidence 357899999999999999999882 34455543
No 339
>COG4240 Predicted kinase [General function prediction only]
Probab=97.58 E-value=8.9e-05 Score=52.22 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh----Hc--CccccchhHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK----KY--CVCHLSTGDMLRAE 55 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~----~~--~~~~is~~~l~~~~ 55 (119)
.+|+.+.|+||-||||||++..|-. ++ ....+|+||+....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 3578999999999999999987754 33 46678999987544
No 340
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.58 E-value=7e-05 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|.++|++||||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998754
No 341
>PRK14974 cell division protein FtsY; Provisional
Probab=97.58 E-value=7.8e-05 Score=55.17 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++..|+++|++|+||||++..||..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 346789999999999999888887653
No 342
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.58 E-value=7.7e-05 Score=48.55 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998764
No 343
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.58 E-value=8.6e-05 Score=48.91 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
..-++|+|++|+||||+|..|.++ |..+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 456899999999999999988765 55555544
No 344
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.58 E-value=7.8e-05 Score=51.39 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998643
No 345
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.58 E-value=6.8e-05 Score=58.99 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+...++++||||+||||+++.|++.+
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHH
Confidence 345689999999999999999999864
No 346
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.57 E-value=7.6e-05 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~ 39 (119)
+|+|+|.||+||||+...|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 347
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.57 E-value=8.3e-05 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 348
>KOG0743|consensus
Probab=97.57 E-value=4.9e-05 Score=57.70 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
-.++.||||+|||++..++|..+++.++++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 468999999999999999999887766544
No 349
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.57 E-value=0.00011 Score=56.92 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD 50 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~ 50 (119)
+..++|.|+||+|||+++..++.. ..+.+++..+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 457888999999999999988754 2566776543
No 350
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.57 E-value=8.2e-05 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 351
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.56 E-value=0.00018 Score=55.28 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~ 54 (119)
...++|.|.||+||||++..++... .+.|++..+-..+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q 136 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ 136 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH
Confidence 4578999999999999999887643 3567777654444
No 352
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.56 E-value=8.7e-05 Score=49.00 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccch-hHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST-GDMLRAEVS 57 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~-~~l~~~~~~ 57 (119)
.+++|+|.||+||||+..+|+++--..+--. -+++.++..
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~es~ 50 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALESA 50 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHHHh
Confidence 5788999999999999999987633333332 345555544
No 353
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=8.1e-05 Score=55.14 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc---------------chhHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL---------------STGDMLRAEVS 57 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i---------------s~~~l~~~~~~ 57 (119)
-|.+|+++||.|+|||.+|++||+--+.+++ +++.++|++..
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve 105 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVE 105 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHH
Confidence 3578999999999999999999986554444 55667776653
No 354
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.56 E-value=8.9e-05 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|++||||||+.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3678999999999999999999864
No 355
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.56 E-value=7.2e-05 Score=60.85 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
++..++|+||||+||||+++.+|+.++..++
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4557999999999999999999998876553
No 356
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.55 E-value=8.8e-05 Score=50.99 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999864
No 357
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.55 E-value=5.9e-05 Score=56.12 Aligned_cols=41 Identities=29% Similarity=0.526 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC----ccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC----VCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~----~~~is~~~l~~~~~~ 57 (119)
+.-|++.||||+|||.+|-.+|+++| +.-+|.+++...+.+
T Consensus 65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK 109 (450)
T ss_pred ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence 45699999999999999999999997 333455555544443
No 358
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.55 E-value=8.4e-05 Score=55.55 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++..|.|+|.+||||||+++.|.+++.
T Consensus 2 ~~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 2 LFHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 35678899999999999999999988764
No 359
>KOG0989|consensus
Probab=97.55 E-value=0.00022 Score=52.09 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=31.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
+..++.++.||||.|||+.|.++|+.++....-...++...
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln 95 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN 95 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence 35568999999999999999999999877555544444333
No 360
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.5e-05 Score=50.73 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999954
No 361
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.54 E-value=9.8e-05 Score=50.73 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.++.++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999964
No 362
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=9.6e-05 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 363
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.53 E-value=0.00011 Score=52.01 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+.-+.+.+++|+|++||||||++..|-..
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 44566789999999999999988887654
No 364
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.53 E-value=8.1e-05 Score=54.69 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..++|.|+||+|||++++.+|+.++..++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 46899999999999999999999875443
No 365
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.53 E-value=0.0001 Score=50.60 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 366
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.53 E-value=0.00012 Score=54.91 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l 51 (119)
...++|.|+||+||||++..++..+ .+.|++..+-
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs 121 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES 121 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence 4578999999999999999988653 3556666543
No 367
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.53 E-value=0.0001 Score=50.09 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 368
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.52 E-value=8.9e-05 Score=51.70 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999854
No 369
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.52 E-value=0.0001 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 370
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.52 E-value=0.00017 Score=49.97 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML 52 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~ 52 (119)
+..++|.|+||+|||++|..++... .+.++++.+-.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~ 56 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE 56 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH
Confidence 5678899999999999999887542 35566665433
No 371
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.0001 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 372
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0001 Score=53.57 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.9
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+...++.+|-|+|+||+||||+...|..+|
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 445677899999999999999999998865
No 373
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00011 Score=50.57 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 374
>KOG0991|consensus
Probab=97.52 E-value=9.1e-05 Score=52.48 Aligned_cols=28 Identities=39% Similarity=0.613 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
....++++|.||||+||||-+..||.++
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3456789999999999999999999864
No 375
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.51 E-value=0.00012 Score=52.12 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.++.++.|+|++|+||||+++.++....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4678999999999999999999997653
No 376
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.51 E-value=0.0001 Score=50.95 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 377
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.51 E-value=0.00011 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 378
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.51 E-value=0.00011 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 379
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.51 E-value=0.00011 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 380
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.51 E-value=9.1e-05 Score=59.09 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
..|+|+|+||+|||++++.++.+.++.++.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 3599999999999999999999988766543
No 381
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00011 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.++.|+|+.||||||+.+.|+..+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998653
No 382
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.51 E-value=0.00016 Score=52.93 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+||||||++|..++-.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4567889999999999999999854
No 383
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00011 Score=56.83 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..++++||+|+||||+|+.+|+.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4569999999999999999999977653
No 384
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00011 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 385
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.51 E-value=0.00011 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999964
No 386
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.50 E-value=0.00011 Score=50.24 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 387
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.50 E-value=7.1e-05 Score=53.17 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM 51 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l 51 (119)
++...++|.|+||||||+++..++.+. .+.++++++-
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 345689999999999999999987652 3667766543
No 388
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.50 E-value=0.00012 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998654
No 389
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.50 E-value=0.00012 Score=49.02 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999864
No 390
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00013 Score=49.04 Aligned_cols=25 Identities=44% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999854
No 391
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.49 E-value=0.0001 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999864
No 392
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00012 Score=51.30 Aligned_cols=25 Identities=48% Similarity=0.609 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 393
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00011 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~ 40 (119)
++.|+|+.||||||+.+.|+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999953
No 394
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.49 E-value=0.00012 Score=51.15 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 395
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.49 E-value=0.0001 Score=49.20 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
.|.....|.|+|+-.||||||+++||..+|-
T Consensus 4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 4 RPFFVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred chhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence 4667789999999999999999999998875
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.49 E-value=0.00014 Score=55.65 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~ 54 (119)
...++|.|+||+||||++..++... .+.|++..+-..+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q 122 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ 122 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence 4578999999999999999998643 4567776554443
No 397
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00011 Score=50.76 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=97.49 E-value=0.00013 Score=55.76 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=26.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTG 49 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~ 49 (119)
.++..|+++|++||||||++..||..+ | +.+++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 346788999999999999888887643 3 4456665
No 399
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.49 E-value=0.00096 Score=49.21 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
+...+.|.|+|||||||+|-.++... .+.+|+...-+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~ 96 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence 34567899999999999999987542 366777755433
No 400
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00013 Score=50.48 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999964
No 401
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.48 E-value=0.00013 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999853
No 402
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.48 E-value=0.00013 Score=53.03 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..|.|+|+|||||||++..++..+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999988753
No 403
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.00012 Score=56.90 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..++|+||||+||||+|+.+|+.+.+
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44699999999999999999998754
No 404
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.48 E-value=0.00014 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 405
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.48 E-value=0.0001 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...|+|+|++||||||++++|.+..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
No 406
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.47 E-value=0.00013 Score=51.11 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999864
No 407
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.47 E-value=0.00012 Score=51.63 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.++.|+|++||||||+++.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999653
No 408
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.47 E-value=0.00013 Score=50.58 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 409
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00014 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..++|+||+|+||||+|+.+|+.+++
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789999999999999999998765
No 410
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.47 E-value=0.00017 Score=59.24 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=31.0
Q ss_pred CCCCc-eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244 14 ESTGV-NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~-~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~ 54 (119)
|.+|. .++++||+|+|||.+|+.||+.+ .+..+++.++...
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 34454 57999999999999999999976 3456676665543
No 411
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.47 E-value=0.00013 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999964
No 412
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.47 E-value=0.00013 Score=49.32 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+...++.|+|+.||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45678999999999999999999863
No 413
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.47 E-value=0.00014 Score=49.64 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999864
No 414
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00013 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999999853
No 415
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.46 E-value=0.00011 Score=54.59 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+|+|+|++||||||+.++|....
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 35689999999999999999998764
No 416
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00013 Score=51.71 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999854
No 417
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00013 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 418
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00014 Score=54.91 Aligned_cols=28 Identities=39% Similarity=0.440 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..++|.||||+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3458899999999999999999988763
No 419
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.46 E-value=0.00011 Score=59.36 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=22.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+++|+|+||+|||++++.||++.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999875
No 420
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.00014 Score=58.00 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..++|+||+|+||||+|+.+|+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3567999999999999999999998764
No 421
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.46 E-value=0.00014 Score=50.00 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+...++|.|+|++||||||+...+.+.+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457789999999999999999998764
No 422
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00013 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+.++.|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456889999999999999999994
No 423
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.46 E-value=0.00014 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 424
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00014 Score=51.29 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.++.++.|+|+.||||||+.+.|+..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35678999999999999999999864
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.46 E-value=0.0002 Score=54.55 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG 49 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~ 49 (119)
.++..|+++|++||||||++..||..+ | +..++.|
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 346789999999999999999999654 3 4455654
No 426
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.46 E-value=0.00014 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 427
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00014 Score=51.00 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999954
No 428
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00015 Score=48.51 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 429
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00014 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999854
No 430
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00029 Score=55.01 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=24.5
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++-..+.+|.|+|++|+||||++..|+..
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999999864
No 431
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.45 E-value=0.00016 Score=49.87 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~ 50 (119)
....+.|.|+||||||++|..++... .+.+++.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 45678999999999999999998653 455776543
No 432
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.45 E-value=0.00014 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q psy9244 19 NAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~ 39 (119)
+|+|+|++||||||+..++..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999975
No 433
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.45 E-value=0.00015 Score=55.27 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTG 49 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~ 49 (119)
.++..++++|++||||||+|..||..+ | +.+++.|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 446788999999999999988888652 2 4456665
No 434
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.45 E-value=0.00014 Score=50.69 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46689999999999999999998643
No 435
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00012 Score=51.61 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=41.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHH-HHHHHHHhh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL-VVDLISNNL 89 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ll~~~l 89 (119)
+.+..|.|+|++||||||+.+.|..-. |-.+++-.++....-++-......+-..+++..+++... +.+++.-++
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl 107 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL 107 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhc
Confidence 345679999999999999999998622 223333222221111111112222333455566676654 333555555
Q ss_pred cC
Q psy9244 90 DK 91 (119)
Q Consensus 90 ~~ 91 (119)
..
T Consensus 108 ~~ 109 (258)
T COG3638 108 GY 109 (258)
T ss_pred cc
Confidence 43
No 436
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.44 E-value=0.0001 Score=49.16 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC-ccccchhHH
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC-VCHLSTGDM 51 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~-~~~is~~~l 51 (119)
++=++.+||||||+|.+|++-|+ +.|+--|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 34478999999999999999999 999877665
No 437
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.44 E-value=0.00013 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=16.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+|.||||+||||+...+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 47899999999997666665544
No 438
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.44 E-value=0.00014 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...|+|+|++||||||+.+.+.+..
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred ceEEEEECCCccccchHHHHHhhhc
Confidence 5689999999999999999998865
No 439
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.44 E-value=0.00015 Score=50.28 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999964
No 440
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00015 Score=50.43 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4668999999999999999999864
No 441
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.43 E-value=0.00017 Score=48.16 Aligned_cols=25 Identities=40% Similarity=0.613 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999964
No 442
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00015 Score=59.47 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
..++|+|+||+||||+|+.||+.+++.
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 346899999999999999999998764
No 443
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00014 Score=51.24 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....++|+|++||||||+.+.++-
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcC
Confidence 456899999999999999999984
No 444
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.43 E-value=0.00018 Score=49.22 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD 50 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~ 50 (119)
.....+.|+|+||||||++|..++... .+.+++..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 345678999999999999999988542 366777754
No 445
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.43 E-value=0.00016 Score=49.84 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999964
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.43 E-value=0.00026 Score=54.97 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH------cCccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK------YCVCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~------~~~~~is~~~l~ 52 (119)
++..++|.|+||+|||++|..++.. ..+.++++.+-.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 3567899999999999999987643 135667665433
No 447
>PRK13764 ATPase; Provisional
Probab=97.43 E-value=0.00013 Score=57.65 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
....|+|+|+|||||||++++|+..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346799999999999999999997763
No 448
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.00016 Score=47.90 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 449
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.43 E-value=0.00016 Score=47.06 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45688999999999999999998643
No 450
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00016 Score=56.23 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..++|+||+|+||||+|+.+|+.+++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3457999999999999999999998764
No 451
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.00016 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999653
No 452
>PLN02772 guanylate kinase
Probab=97.43 E-value=0.00019 Score=54.03 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=26.1
Q ss_pred CCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 8 LPKESHESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 8 ~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
|++...+.....++|+||+||||+|+.+.|.+.+
T Consensus 126 ~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 126 WSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 3333444455679999999999999999998754
No 453
>PRK10908 cell division protein FtsE; Provisional
Probab=97.43 E-value=0.00016 Score=49.99 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 454
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00016 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|++||||||+.+.|+..
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4668999999999999999999854
No 455
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.42 E-value=0.00016 Score=50.23 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|++||||||+.+.|+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999964
No 456
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.42 E-value=0.00017 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999853
No 457
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.42 E-value=0.00015 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++..+.|+|+.||||||+++.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 458
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00016 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|++||||||+.+.|+..
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568899999999999999999864
No 459
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.42 E-value=0.00016 Score=46.73 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+|+|.+|+||||+..++...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999853
No 460
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.42 E-value=0.00015 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+|+|.+|+|||++..++...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999764
No 461
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.42 E-value=0.00016 Score=50.99 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|++||||||+.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.42 E-value=0.00018 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.|+|++||||||+++.|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999875
No 463
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.00016 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+.++.|+|+.||||||+++.|+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 464
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.42 E-value=0.00016 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.++.|+|++||||||+.+.|+..+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45688999999999999999998543
No 465
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00017 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|++||||||+.+.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999964
No 466
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.41 E-value=0.00018 Score=49.23 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999864
No 467
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00017 Score=51.53 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+..+.|+|++||||||+.+.|+..
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 468
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00017 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999999864
No 469
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.41 E-value=0.00016 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~ 39 (119)
.+|+++|+|||||||+.+++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999974
No 470
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.41 E-value=0.00018 Score=48.32 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+..
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 471
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00043 Score=47.99 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG 73 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g 73 (119)
++.-|+|-|.=||||||+++.|++.+.-..+++ +-.-...++++++.+++.+.++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~ 56 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNG 56 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCC
Confidence 356789999999999999999998763322211 0001123467777787777665
No 472
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00018 Score=49.43 Aligned_cols=26 Identities=42% Similarity=0.571 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.++.++.|+|+.||||||+.+.|+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 473
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00017 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+.++.|+|++||||||+.+.|+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999994
No 474
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.41 E-value=0.00017 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999953
No 475
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.00017 Score=50.79 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+++.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4568999999999999999999853
No 476
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00019 Score=47.86 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998653
No 477
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00017 Score=50.32 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4668999999999999999999864
No 478
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.41 E-value=0.00017 Score=50.47 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999964
No 479
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.41 E-value=0.00019 Score=52.09 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+....+.|+|+|||||||+...+...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345788999999999999998887764
No 480
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.41 E-value=0.0006 Score=51.15 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE 93 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~ 93 (119)
.++|+|++||||||+...+.+.+ +..++++.|=+.-.+..........+. +-|... ......++..|...
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~--evg~~~--~~~~~~l~~aLR~~- 225 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQS--QIGRDV--DSFANGIRLALRRA- 225 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccc--ccCCCc--cCHHHHHHHhhccC-
Confidence 58899999999999999997765 234556554433322211111000000 001111 12344555555543
Q ss_pred CCCcEEEeCCCCCHHHHHH
Q psy9244 94 CQNGFLLDGFPRTVPQAEK 112 (119)
Q Consensus 94 ~~~g~vldg~P~~~~q~~~ 112 (119)
-.+|+-|-=|+.+.++.
T Consensus 226 --PD~I~vGEiRd~et~~~ 242 (372)
T TIGR02525 226 --PKIIGVGEIRDLETFQA 242 (372)
T ss_pred --CCEEeeCCCCCHHHHHH
Confidence 24666665588777764
No 481
>KOG1533|consensus
Probab=97.41 E-value=8.2e-05 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=18.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
..-+|+|||||||||.|--+.+-
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~f 25 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQF 25 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHH
Confidence 34689999999999998777653
No 482
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.41 E-value=0.00018 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 483
>PRK10646 ADP-binding protein; Provisional
Probab=97.40 E-value=0.00025 Score=46.88 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
+.+..|++.|.-|+||||+++.|++.+|+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44567999999999999999999999875
No 484
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00027 Score=57.23 Aligned_cols=45 Identities=18% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCCCCc-eEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244 13 HESTGV-NAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS 57 (119)
Q Consensus 13 ~p~~~~-~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~ 57 (119)
-|.+|. .++++||+|+|||.+|+.||+.+. +..|++++.+....-
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV 566 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV 566 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence 455555 567799999999999999999763 677899998877653
No 485
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00018 Score=49.36 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+..
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 486
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.40 E-value=0.00012 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~ 41 (119)
|+|.|+|||||||+.+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5799999999999999998874
No 487
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00018 Score=50.44 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999964
No 488
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.40 E-value=0.00018 Score=45.69 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+|+++|.+||||||+...+....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998643
No 489
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00019 Score=54.35 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG 49 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~ 49 (119)
..+.+|+|+|++||||||++..||..+ .+.+++.|
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 446789999999999999999998654 24455654
No 490
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00018 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|++||||||+.+.|+..+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998653
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.40 E-value=0.00016 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+.|+|++||||||++.+|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998864
No 492
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00017 Score=51.05 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999953
No 493
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.40 E-value=0.00018 Score=51.36 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+||.||||||+.+.|+.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568899999999999999999974
No 494
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.40 E-value=0.00019 Score=49.75 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.++.|+|+.||||||+.+.|+..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999999653
No 495
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.40 E-value=0.00019 Score=49.17 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999864
No 496
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.00019 Score=56.09 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
..++|+||+|+||||+|+.+|+.+++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 457899999999999999999998763
No 497
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.00023 Score=58.48 Aligned_cols=35 Identities=20% Similarity=0.458 Sum_probs=27.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
.++|+||+|+|||++|+.|++.+ .+..+++.++..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 68899999999999999999864 245567766544
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.39 E-value=0.00015 Score=56.33 Aligned_cols=26 Identities=38% Similarity=0.584 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++.++.|+|++||||||+++.|+.-|
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999998765
No 499
>PRK04296 thymidine kinase; Provisional
Probab=97.39 E-value=0.00018 Score=49.02 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++++|++|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999988765
No 500
>PRK13768 GTPase; Provisional
Probab=97.39 E-value=0.00018 Score=51.15 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++|.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4578999999999999998888654
Done!