Query psy9244
Match_columns 119
No_of_seqs 199 out of 1411
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9244.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9244hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3umf_A Adenylate kinase; rossm 100.0 6.3E-31 2.1E-35 181.4 12.2 106 12-117 24-130 (217)
2 3sr0_A Adenylate kinase; phosp 100.0 1E-30 3.5E-35 179.2 12.0 98 18-118 1-98 (206)
3 3gmt_A Adenylate kinase; ssgci 100.0 5.4E-28 1.8E-32 167.8 12.0 102 14-115 5-106 (230)
4 1ak2_A Adenylate kinase isoenz 99.9 1.2E-25 4.1E-30 155.7 12.5 116 2-117 1-116 (233)
5 3tlx_A Adenylate kinase 2; str 99.9 2.5E-24 8.4E-29 150.3 12.2 103 15-117 27-129 (243)
6 3dl0_A Adenylate kinase; phosp 99.9 6.9E-23 2.4E-27 139.8 12.5 100 18-117 1-100 (216)
7 3be4_A Adenylate kinase; malar 99.9 5.7E-23 1.9E-27 140.8 11.4 101 17-117 5-105 (217)
8 1aky_A Adenylate kinase; ATP:A 99.9 1.1E-22 3.7E-27 139.5 12.2 103 15-117 2-105 (220)
9 3fb4_A Adenylate kinase; psych 99.9 1.4E-22 4.8E-27 138.2 12.1 100 18-117 1-100 (216)
10 2cdn_A Adenylate kinase; phosp 99.9 3E-21 1E-25 130.5 12.6 106 12-117 15-120 (201)
11 1e4v_A Adenylate kinase; trans 99.9 5.6E-22 1.9E-26 135.5 9.0 98 18-115 1-98 (214)
12 2xb4_A Adenylate kinase; ATP-b 99.9 4.6E-21 1.6E-25 132.0 11.3 99 18-117 1-99 (223)
13 1zak_A Adenylate kinase; ATP:A 99.8 6.2E-21 2.1E-25 130.8 9.7 100 16-115 4-104 (222)
14 1zd8_A GTP:AMP phosphotransfer 99.8 2.8E-20 9.7E-25 128.0 11.9 99 16-115 6-104 (227)
15 2c95_A Adenylate kinase 1; tra 99.8 1.3E-19 4.5E-24 121.3 11.8 102 16-117 8-110 (196)
16 1ukz_A Uridylate kinase; trans 99.8 9.7E-20 3.3E-24 123.0 10.9 106 12-117 10-118 (203)
17 1qf9_A UMP/CMP kinase, protein 99.8 3.4E-19 1.2E-23 118.8 13.2 101 17-118 6-106 (194)
18 3cm0_A Adenylate kinase; ATP-b 99.8 3.9E-19 1.3E-23 118.4 11.9 97 16-117 3-99 (186)
19 2bwj_A Adenylate kinase 5; pho 99.8 4.5E-19 1.6E-23 118.9 11.2 100 17-116 12-112 (199)
20 1tev_A UMP-CMP kinase; ploop, 99.8 3.1E-18 1E-22 114.3 12.5 101 17-117 3-108 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.7 3.7E-16 1.3E-20 108.6 12.9 98 16-114 26-123 (246)
22 3lw7_A Adenylate kinase relate 99.6 6.4E-15 2.2E-19 96.1 10.5 94 18-117 2-99 (179)
23 1ly1_A Polynucleotide kinase; 99.6 1.6E-14 5.4E-19 95.1 8.2 98 17-117 2-100 (181)
24 1ltq_A Polynucleotide kinase; 99.4 1E-12 3.4E-17 93.3 8.5 96 18-116 3-99 (301)
25 1kht_A Adenylate kinase; phosp 99.3 1.3E-12 4.3E-17 86.7 3.6 41 17-57 3-48 (192)
26 2rhm_A Putative kinase; P-loop 99.3 1.6E-11 5.3E-16 81.6 8.7 40 16-55 4-43 (193)
27 3vaa_A Shikimate kinase, SK; s 99.3 6E-12 2E-16 84.7 6.7 90 16-114 24-116 (199)
28 3t61_A Gluconokinase; PSI-biol 99.3 1.6E-11 5.5E-16 82.6 8.3 88 15-115 16-106 (202)
29 1nks_A Adenylate kinase; therm 99.3 3.4E-12 1.2E-16 84.6 4.5 39 18-56 2-45 (194)
30 2pbr_A DTMP kinase, thymidylat 99.3 1.9E-11 6.4E-16 81.1 7.9 54 19-78 2-58 (195)
31 2wwf_A Thymidilate kinase, put 99.2 3.1E-12 1.1E-16 86.3 2.7 89 16-106 9-105 (212)
32 1cke_A CK, MSSA, protein (cyti 99.2 8.3E-11 2.8E-15 80.0 9.4 40 17-56 5-44 (227)
33 2p5t_B PEZT; postsegregational 99.2 6.9E-11 2.4E-15 82.4 8.8 96 15-117 30-131 (253)
34 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 1E-10 3.4E-15 81.9 8.1 85 17-116 4-93 (260)
35 3zvl_A Bifunctional polynucleo 99.2 4.9E-11 1.7E-15 88.8 6.8 78 13-117 254-331 (416)
36 1gvn_B Zeta; postsegregational 99.2 3E-11 1E-15 86.0 5.2 96 15-117 31-132 (287)
37 2pt5_A Shikimate kinase, SK; a 99.2 8.8E-11 3E-15 76.5 7.0 39 18-56 1-39 (168)
38 1e6c_A Shikimate kinase; phosp 99.1 9.5E-11 3.3E-15 76.6 6.8 38 18-55 3-40 (173)
39 2v54_A DTMP kinase, thymidylat 99.1 6.8E-11 2.3E-15 79.2 6.2 84 16-107 3-98 (204)
40 1y63_A LMAJ004144AAA protein; 99.1 6.1E-11 2.1E-15 78.9 5.3 40 16-55 9-49 (184)
41 1zuh_A Shikimate kinase; alpha 99.1 6.4E-11 2.2E-15 77.4 5.1 42 15-56 5-46 (168)
42 2iyv_A Shikimate kinase, SK; t 99.1 5.2E-11 1.8E-15 78.8 4.6 39 18-56 3-41 (184)
43 2if2_A Dephospho-COA kinase; a 99.1 1.4E-10 4.7E-15 77.9 6.6 48 18-66 2-49 (204)
44 1jjv_A Dephospho-COA kinase; P 99.1 8E-10 2.7E-14 74.3 9.7 40 18-58 3-42 (206)
45 3trf_A Shikimate kinase, SK; a 99.1 1.1E-10 3.6E-15 77.3 5.2 40 17-56 5-44 (185)
46 2vli_A Antibiotic resistance p 99.1 5.8E-10 2E-14 73.4 8.3 31 16-46 4-34 (183)
47 2f6r_A COA synthase, bifunctio 99.1 3.5E-10 1.2E-14 80.1 7.3 51 12-63 70-120 (281)
48 4eaq_A DTMP kinase, thymidylat 99.1 3.8E-10 1.3E-14 77.8 7.3 92 13-110 22-134 (229)
49 3iij_A Coilin-interacting nucl 99.1 1.9E-10 6.6E-15 75.9 5.5 40 16-55 10-49 (180)
50 2z0h_A DTMP kinase, thymidylat 99.1 6.2E-10 2.1E-14 74.0 7.9 53 19-77 2-57 (197)
51 1via_A Shikimate kinase; struc 99.0 1.6E-10 5.5E-15 76.0 4.6 39 18-56 5-43 (175)
52 4e22_A Cytidylate kinase; P-lo 99.0 7.8E-10 2.7E-14 77.1 7.9 42 15-56 25-66 (252)
53 2grj_A Dephospho-COA kinase; T 99.0 3.2E-10 1.1E-14 76.4 5.1 45 14-58 9-53 (192)
54 1uj2_A Uridine-cytidine kinase 99.0 2.1E-10 7.2E-15 79.8 4.2 40 15-54 20-69 (252)
55 1kag_A SKI, shikimate kinase I 99.0 4.1E-10 1.4E-14 73.6 4.9 40 17-56 4-43 (173)
56 1vht_A Dephospho-COA kinase; s 99.0 1.6E-09 5.6E-14 73.4 8.1 50 17-67 4-53 (218)
57 1nn5_A Similar to deoxythymidy 99.0 5.3E-10 1.8E-14 75.3 5.5 62 16-79 8-69 (215)
58 3nwj_A ATSK2; P loop, shikimat 99.0 2E-09 6.7E-14 75.3 8.4 40 17-56 48-87 (250)
59 3ch4_B Pmkase, phosphomevalona 99.0 5.7E-09 2E-13 70.9 10.3 96 17-117 11-124 (202)
60 3kb2_A SPBC2 prophage-derived 99.0 3E-10 1E-14 73.9 3.8 37 18-54 2-38 (173)
61 1uf9_A TT1252 protein; P-loop, 99.0 6.6E-10 2.2E-14 74.2 5.1 42 14-56 5-46 (203)
62 2plr_A DTMP kinase, probable t 99.0 3.6E-10 1.2E-14 75.8 3.4 28 17-44 4-31 (213)
63 2axn_A 6-phosphofructo-2-kinas 98.9 1.4E-09 4.6E-14 83.2 6.5 99 13-117 31-141 (520)
64 4i1u_A Dephospho-COA kinase; s 98.9 5.2E-09 1.8E-13 71.5 8.5 56 14-70 6-61 (210)
65 3r20_A Cytidylate kinase; stru 98.9 1.8E-09 6.1E-14 74.9 5.0 42 15-56 7-48 (233)
66 3fdi_A Uncharacterized protein 98.9 2.3E-09 7.8E-14 72.6 5.2 38 18-56 7-44 (201)
67 3ake_A Cytidylate kinase; CMP 98.9 2.5E-09 8.5E-14 71.6 5.2 38 19-56 4-41 (208)
68 1qhx_A CPT, protein (chloramph 98.9 2.5E-09 8.6E-14 70.1 5.1 38 17-54 3-42 (178)
69 1q3t_A Cytidylate kinase; nucl 98.8 3.3E-09 1.1E-13 72.9 5.4 44 13-56 12-55 (236)
70 1knq_A Gluconate kinase; ALFA/ 98.8 2.8E-09 9.5E-14 69.9 4.5 37 16-52 7-43 (175)
71 2h92_A Cytidylate kinase; ross 98.8 3.5E-09 1.2E-13 71.7 4.8 39 17-55 3-41 (219)
72 3hdt_A Putative kinase; struct 98.8 5.6E-09 1.9E-13 71.9 5.6 40 17-57 14-53 (223)
73 4eun_A Thermoresistant glucoki 98.8 5.9E-09 2E-13 70.0 4.3 37 16-52 28-64 (200)
74 2ze6_A Isopentenyl transferase 98.8 3.7E-09 1.3E-13 73.7 3.3 35 18-52 2-36 (253)
75 2qt1_A Nicotinamide riboside k 98.7 1.5E-08 5E-13 68.2 4.2 41 14-54 18-59 (207)
76 3v9p_A DTMP kinase, thymidylat 98.7 7.6E-09 2.6E-13 71.4 2.4 62 16-79 24-88 (227)
77 3crm_A TRNA delta(2)-isopenten 98.6 1.6E-08 5.6E-13 73.1 3.4 35 17-51 5-39 (323)
78 3a8t_A Adenylate isopentenyltr 98.6 1.3E-08 4.5E-13 73.9 2.6 35 17-51 40-74 (339)
79 1zp6_A Hypothetical protein AT 98.6 3.9E-08 1.3E-12 65.0 4.2 38 16-53 8-47 (191)
80 2jaq_A Deoxyguanosine kinase; 98.6 3.4E-08 1.2E-12 65.7 3.8 29 19-47 2-30 (205)
81 3uie_A Adenylyl-sulfate kinase 98.6 4.9E-08 1.7E-12 65.4 4.6 37 15-51 23-64 (200)
82 1bif_A 6-phosphofructo-2-kinas 98.6 6.7E-08 2.3E-12 72.8 5.0 99 13-117 35-145 (469)
83 1a7j_A Phosphoribulokinase; tr 98.5 2.5E-08 8.6E-13 71.0 2.4 38 16-53 4-46 (290)
84 2yvu_A Probable adenylyl-sulfa 98.5 7.4E-08 2.5E-12 63.7 4.2 38 14-51 10-52 (186)
85 2pez_A Bifunctional 3'-phospho 98.5 6.3E-08 2.2E-12 63.6 3.7 34 15-48 3-39 (179)
86 1m7g_A Adenylylsulfate kinase; 98.5 7E-08 2.4E-12 65.2 3.9 37 15-51 23-65 (211)
87 2qor_A Guanylate kinase; phosp 98.5 1.4E-07 4.7E-12 63.4 5.1 28 15-42 10-37 (204)
88 3t15_A Ribulose bisphosphate c 98.5 9.9E-08 3.4E-12 67.8 4.0 40 14-53 33-74 (293)
89 3d3q_A TRNA delta(2)-isopenten 98.5 6.9E-08 2.4E-12 70.2 2.8 34 18-51 8-41 (340)
90 3foz_A TRNA delta(2)-isopenten 98.4 1.2E-07 4E-12 68.3 3.6 35 17-51 10-44 (316)
91 3asz_A Uridine kinase; cytidin 98.4 1.3E-07 4.6E-12 63.5 3.6 37 16-52 5-43 (211)
92 3exa_A TRNA delta(2)-isopenten 98.4 1.3E-07 4.4E-12 68.2 3.4 35 17-51 3-37 (322)
93 3syl_A Protein CBBX; photosynt 98.4 7.3E-08 2.5E-12 68.1 2.1 38 15-52 65-111 (309)
94 2bdt_A BH3686; alpha-beta prot 98.4 2.3E-07 7.9E-12 61.3 4.2 36 18-53 3-39 (189)
95 4b4t_M 26S protease regulatory 98.4 2E-07 6.7E-12 69.9 3.8 36 17-52 215-252 (434)
96 1dek_A Deoxynucleoside monopho 98.4 4.5E-07 1.5E-11 63.1 5.1 40 18-57 2-41 (241)
97 4b4t_L 26S protease subunit RP 98.4 2.3E-07 7.7E-12 69.6 3.8 37 16-52 214-252 (437)
98 4b4t_K 26S protease regulatory 98.4 2.3E-07 8E-12 69.4 3.8 32 17-48 206-237 (428)
99 2gks_A Bifunctional SAT/APS ki 98.4 1.8E-06 6.1E-11 66.3 8.7 41 15-56 370-415 (546)
100 4b4t_J 26S protease regulatory 98.4 2.1E-07 7.3E-12 69.1 3.4 32 17-48 182-213 (405)
101 4edh_A DTMP kinase, thymidylat 98.4 2.5E-07 8.6E-12 63.1 3.5 53 16-74 5-60 (213)
102 3ec2_A DNA replication protein 98.3 5.5E-07 1.9E-11 59.1 4.8 40 17-56 38-83 (180)
103 2qz4_A Paraplegin; AAA+, SPG7, 98.3 3.8E-07 1.3E-11 62.8 3.8 31 16-46 38-68 (262)
104 3c8u_A Fructokinase; YP_612366 98.3 3E-07 1E-11 61.9 3.2 37 14-50 19-60 (208)
105 4b4t_H 26S protease regulatory 98.3 3.6E-07 1.2E-11 68.9 3.3 33 16-48 242-274 (467)
106 1lv7_A FTSH; alpha/beta domain 98.3 5E-07 1.7E-11 62.5 3.8 30 17-46 45-74 (257)
107 4b4t_I 26S protease regulatory 98.3 4.9E-07 1.7E-11 67.6 3.8 32 17-48 216-247 (437)
108 2j41_A Guanylate kinase; GMP, 98.3 5.3E-07 1.8E-11 60.0 3.7 26 16-41 5-30 (207)
109 3cf0_A Transitional endoplasmi 98.3 5.9E-07 2E-11 63.8 3.9 42 16-57 48-91 (301)
110 1kgd_A CASK, peripheral plasma 98.3 7.7E-07 2.6E-11 58.7 4.0 27 15-41 3-29 (180)
111 3h4m_A Proteasome-activating n 98.3 7E-07 2.4E-11 62.4 4.0 32 16-47 50-81 (285)
112 3b9p_A CG5977-PA, isoform A; A 98.3 6.3E-07 2.2E-11 63.1 3.8 31 16-46 53-83 (297)
113 2jeo_A Uridine-cytidine kinase 98.2 9.3E-07 3.2E-11 61.0 4.5 29 16-44 24-52 (245)
114 3eie_A Vacuolar protein sortin 98.2 7E-07 2.4E-11 64.0 3.7 37 17-53 51-89 (322)
115 3tau_A Guanylate kinase, GMP k 98.2 8.7E-07 3E-11 59.8 3.9 28 15-42 6-33 (208)
116 3hws_A ATP-dependent CLP prote 98.2 8.2E-07 2.8E-11 64.5 4.0 33 16-48 50-82 (363)
117 3eph_A TRNA isopentenyltransfe 98.2 5.3E-07 1.8E-11 67.0 3.0 33 18-50 3-35 (409)
118 1sq5_A Pantothenate kinase; P- 98.2 9.9E-07 3.4E-11 63.0 4.2 38 14-51 77-121 (308)
119 3lv8_A DTMP kinase, thymidylat 98.2 2.7E-07 9.2E-12 64.0 1.2 54 16-71 26-79 (236)
120 3tr0_A Guanylate kinase, GMP k 98.2 1.3E-06 4.4E-11 58.1 4.3 26 16-41 6-31 (205)
121 2w58_A DNAI, primosome compone 98.2 1.9E-06 6.6E-11 57.3 5.1 39 18-56 55-98 (202)
122 1d2n_A N-ethylmaleimide-sensit 98.2 9.8E-07 3.3E-11 61.5 3.5 32 16-47 63-94 (272)
123 1p5z_B DCK, deoxycytidine kina 98.2 5E-07 1.7E-11 62.9 2.0 35 12-46 19-54 (263)
124 1g8f_A Sulfate adenylyltransfe 98.2 8E-07 2.7E-11 67.8 3.1 37 14-50 392-435 (511)
125 1g41_A Heat shock protein HSLU 98.2 1.1E-06 3.7E-11 66.1 3.7 33 17-49 50-82 (444)
126 1x6v_B Bifunctional 3'-phospho 98.2 1.1E-06 3.9E-11 68.4 3.9 40 16-55 51-94 (630)
127 3tqc_A Pantothenate kinase; bi 98.2 1.5E-06 5.3E-11 62.7 4.4 38 14-51 89-133 (321)
128 1ofh_A ATP-dependent HSL prote 98.2 1.2E-06 4E-11 61.6 3.5 30 17-46 50-79 (310)
129 1m8p_A Sulfate adenylyltransfe 98.2 1.8E-06 6.1E-11 66.7 4.7 39 13-51 392-436 (573)
130 1xwi_A SKD1 protein; VPS4B, AA 98.2 1.4E-06 4.7E-11 62.6 3.8 30 16-45 44-74 (322)
131 3tmk_A Thymidylate kinase; pho 98.1 1.2E-06 4.1E-11 59.9 3.2 53 16-73 4-56 (216)
132 2v1u_A Cell division control p 98.1 1.1E-05 3.9E-10 58.0 8.6 27 15-41 42-68 (387)
133 2x8a_A Nuclear valosin-contain 98.1 1.5E-06 5.2E-11 61.2 3.9 28 19-46 46-73 (274)
134 2r62_A Cell division protease 98.1 6.3E-07 2.2E-11 62.2 1.8 30 18-47 45-74 (268)
135 1um8_A ATP-dependent CLP prote 98.1 1.5E-06 5.1E-11 63.3 3.8 31 17-47 72-102 (376)
136 4bas_A ADP-ribosylation factor 98.1 1.2E-06 4.1E-11 57.7 3.0 39 1-39 1-39 (199)
137 2qp9_X Vacuolar protein sortin 98.1 1.3E-06 4.5E-11 63.5 3.5 37 17-53 84-122 (355)
138 1rz3_A Hypothetical protein rb 98.1 2.2E-06 7.4E-11 57.4 4.0 38 14-51 19-61 (201)
139 1gtv_A TMK, thymidylate kinase 98.1 4E-07 1.4E-11 61.0 0.3 25 19-43 2-26 (214)
140 3ld9_A DTMP kinase, thymidylat 98.1 3.2E-06 1.1E-10 58.1 4.7 57 14-72 18-75 (223)
141 4hlc_A DTMP kinase, thymidylat 98.1 6.9E-06 2.4E-10 55.6 6.3 56 18-79 3-60 (205)
142 1l8q_A Chromosomal replication 98.1 3E-06 1E-10 60.4 4.8 39 17-55 37-80 (324)
143 1jbk_A CLPB protein; beta barr 98.1 2.2E-06 7.4E-11 55.6 3.7 25 17-41 43-67 (195)
144 3d8b_A Fidgetin-like protein 1 98.1 2E-06 6.8E-11 62.6 3.8 36 16-51 116-153 (357)
145 3bos_A Putative DNA replicatio 98.1 1.8E-06 6.2E-11 58.3 3.4 37 16-52 51-92 (242)
146 2qmh_A HPR kinase/phosphorylas 98.1 1.8E-06 6.1E-11 58.6 3.2 33 17-50 34-66 (205)
147 1odf_A YGR205W, hypothetical 3 98.1 2.1E-06 7.1E-11 61.1 3.8 39 14-52 28-74 (290)
148 2ga8_A Hypothetical 39.9 kDa p 98.1 1E-06 3.5E-11 64.5 2.0 29 17-45 24-52 (359)
149 1ixz_A ATP-dependent metallopr 98.1 2.5E-06 8.5E-11 58.8 3.9 33 19-51 51-85 (254)
150 4tmk_A Protein (thymidylate ki 98.1 3.5E-06 1.2E-10 57.4 4.5 52 17-71 3-55 (213)
151 2p65_A Hypothetical protein PF 98.1 1.7E-06 5.7E-11 56.2 2.8 25 17-41 43-67 (187)
152 1ye8_A Protein THEP1, hypothet 98.1 2.5E-06 8.4E-11 56.5 3.5 26 18-43 1-26 (178)
153 1in4_A RUVB, holliday junction 98.1 2.6E-06 9E-11 61.3 3.9 27 18-44 52-78 (334)
154 2ocp_A DGK, deoxyguanosine kin 98.1 2.8E-06 9.6E-11 58.3 3.9 27 17-43 2-29 (241)
155 3cf2_A TER ATPase, transitiona 98.1 2.1E-06 7.3E-11 68.6 3.5 38 16-53 237-276 (806)
156 3vfd_A Spastin; ATPase, microt 98.1 2.8E-06 9.6E-11 62.3 3.9 36 17-52 148-185 (389)
157 2kjq_A DNAA-related protein; s 98.1 2.1E-06 7.1E-11 55.3 2.8 37 16-52 35-76 (149)
158 2c9o_A RUVB-like 1; hexameric 98.1 2.6E-06 8.8E-11 63.9 3.6 30 17-46 63-94 (456)
159 3pfi_A Holliday junction ATP-d 98.0 2.9E-06 9.8E-11 60.7 3.6 31 18-48 56-86 (338)
160 4gp7_A Metallophosphoesterase; 98.0 2.5E-06 8.5E-11 55.9 3.0 33 16-50 8-40 (171)
161 3a00_A Guanylate kinase, GMP k 98.0 3.5E-06 1.2E-10 55.7 3.4 24 18-41 2-25 (186)
162 2zan_A Vacuolar protein sortin 98.0 4.2E-06 1.4E-10 62.6 3.9 40 17-56 167-209 (444)
163 2ce7_A Cell division protein F 98.0 4E-06 1.4E-10 63.5 3.8 30 18-47 50-79 (476)
164 3ney_A 55 kDa erythrocyte memb 98.0 5.9E-06 2E-10 55.8 4.3 27 16-42 18-44 (197)
165 3n70_A Transport activator; si 98.0 3.9E-06 1.3E-10 53.4 3.2 25 17-41 24-48 (145)
166 1iy2_A ATP-dependent metallopr 98.0 4.8E-06 1.7E-10 58.3 3.9 28 19-46 75-102 (278)
167 1fnn_A CDC6P, cell division co 98.0 5E-05 1.7E-09 54.7 9.3 23 19-41 46-68 (389)
168 2qgz_A Helicase loader, putati 98.0 6.5E-06 2.2E-10 58.9 4.4 41 17-57 152-198 (308)
169 1lvg_A Guanylate kinase, GMP k 98.0 4.3E-06 1.5E-10 56.0 3.2 25 17-41 4-28 (198)
170 1sxj_A Activator 1 95 kDa subu 98.0 4.8E-06 1.6E-10 63.4 3.9 31 17-47 77-107 (516)
171 2h17_A ADP-ribosylation factor 98.0 3.6E-06 1.2E-10 54.9 2.8 29 12-40 16-44 (181)
172 3co5_A Putative two-component 98.0 1.9E-06 6.4E-11 54.9 1.3 36 18-53 28-64 (143)
173 3u61_B DNA polymerase accessor 98.0 3.3E-05 1.1E-09 54.9 7.8 31 18-48 49-79 (324)
174 3hjn_A DTMP kinase, thymidylat 97.9 2.2E-05 7.4E-10 52.7 6.2 23 19-41 2-24 (197)
175 2gf9_A RAS-related protein RAB 97.9 7.5E-06 2.6E-10 53.6 3.7 36 5-40 10-45 (189)
176 3cr8_A Sulfate adenylyltranfer 97.9 3.4E-06 1.2E-10 64.9 2.2 39 15-53 367-411 (552)
177 1ex7_A Guanylate kinase; subst 97.9 6.8E-06 2.3E-10 55.0 3.4 22 20-41 4-25 (186)
178 2h57_A ADP-ribosylation factor 97.9 4.8E-06 1.7E-10 54.6 2.5 29 12-40 16-44 (190)
179 3pvs_A Replication-associated 97.9 8E-06 2.7E-10 61.3 3.9 30 18-47 51-80 (447)
180 3hu3_A Transitional endoplasmi 97.9 8.2E-06 2.8E-10 61.9 3.8 36 17-52 238-275 (489)
181 3lnc_A Guanylate kinase, GMP k 97.9 5.8E-06 2E-10 56.3 2.8 26 16-41 26-52 (231)
182 1z06_A RAS-related protein RAB 97.9 7.8E-06 2.7E-10 53.5 3.3 28 12-39 15-42 (189)
183 4fcw_A Chaperone protein CLPB; 97.9 9.6E-06 3.3E-10 57.1 3.9 24 18-41 48-71 (311)
184 3ihw_A Centg3; RAS, centaurin, 97.9 9.8E-06 3.3E-10 53.2 3.7 29 12-40 15-43 (184)
185 1tue_A Replication protein E1; 97.9 8E-06 2.7E-10 55.6 3.3 29 18-46 59-87 (212)
186 2z4s_A Chromosomal replication 97.9 1.4E-05 4.8E-10 59.7 4.9 39 17-55 130-175 (440)
187 1svm_A Large T antigen; AAA+ f 97.9 1.1E-05 3.9E-10 59.3 4.3 32 16-47 168-199 (377)
188 1znw_A Guanylate kinase, GMP k 97.9 1.1E-05 3.8E-10 54.1 3.9 28 14-41 17-44 (207)
189 1z6g_A Guanylate kinase; struc 97.9 9.8E-06 3.3E-10 55.0 3.6 26 16-41 22-47 (218)
190 3uk6_A RUVB-like 2; hexameric 97.9 1E-05 3.4E-10 58.4 3.6 27 17-43 70-96 (368)
191 1s96_A Guanylate kinase, GMP k 97.9 1.2E-05 4.2E-10 54.9 3.9 28 15-42 14-41 (219)
192 3aez_A Pantothenate kinase; tr 97.8 1.2E-05 4.1E-10 57.7 4.0 28 14-41 87-114 (312)
193 2dhr_A FTSH; AAA+ protein, hex 97.8 1.1E-05 3.7E-10 61.5 3.8 29 18-46 65-93 (499)
194 2chg_A Replication factor C sm 97.8 1.1E-05 3.9E-10 53.3 3.5 23 19-41 40-62 (226)
195 1hqc_A RUVB; extended AAA-ATPa 97.8 7.3E-06 2.5E-10 58.1 2.7 28 18-45 39-66 (324)
196 1njg_A DNA polymerase III subu 97.8 1.6E-05 5.4E-10 53.2 4.1 25 18-42 46-70 (250)
197 2a5j_A RAS-related protein RAB 97.8 1.7E-05 5.8E-10 52.1 4.1 29 12-40 16-44 (191)
198 3cf2_A TER ATPase, transitiona 97.8 8.9E-06 3E-10 65.1 3.1 41 16-56 510-552 (806)
199 2bjv_A PSP operon transcriptio 97.8 1.2E-05 4.3E-10 55.6 3.4 33 18-50 30-67 (265)
200 2r44_A Uncharacterized protein 97.8 6.8E-06 2.3E-10 58.7 2.1 28 18-45 47-74 (331)
201 3pxg_A Negative regulator of g 97.8 1.4E-05 4.6E-10 60.2 3.8 25 17-41 201-225 (468)
202 3m6a_A ATP-dependent protease 97.8 1.3E-05 4.4E-10 61.5 3.7 29 16-44 107-135 (543)
203 1ypw_A Transitional endoplasmi 97.8 1.1E-05 3.6E-10 64.6 3.2 34 15-48 236-269 (806)
204 2qby_B CDC6 homolog 3, cell di 97.8 1.5E-05 5E-10 57.6 3.6 25 17-41 45-69 (384)
205 3te6_A Regulatory protein SIR3 97.8 9E-06 3.1E-10 58.6 2.3 27 15-41 43-69 (318)
206 2ehv_A Hypothetical protein PH 97.8 1.4E-05 4.9E-10 54.4 3.2 24 15-38 28-51 (251)
207 3llu_A RAS-related GTP-binding 97.8 1.5E-05 5E-10 52.7 2.9 30 12-41 15-44 (196)
208 1xjc_A MOBB protein homolog; s 97.8 2.1E-05 7.1E-10 51.9 3.6 26 16-41 3-28 (169)
209 1c9k_A COBU, adenosylcobinamid 97.8 1.4E-05 4.8E-10 53.3 2.8 28 20-48 2-31 (180)
210 3con_A GTPase NRAS; structural 97.8 1.5E-05 5.2E-10 52.0 3.0 25 16-40 20-44 (190)
211 2qby_A CDC6 homolog 1, cell di 97.7 1.7E-05 5.7E-10 57.0 3.3 26 16-41 44-69 (386)
212 4a74_A DNA repair and recombin 97.7 1.7E-05 5.7E-10 53.4 3.0 25 16-40 24-48 (231)
213 1zd9_A ADP-ribosylation factor 97.7 1.9E-05 6.5E-10 51.8 3.1 28 12-39 17-44 (188)
214 2oil_A CATX-8, RAS-related pro 97.7 2.2E-05 7.5E-10 51.4 3.4 27 14-40 22-48 (193)
215 3pxi_A Negative regulator of g 97.7 2.5E-05 8.7E-10 61.8 3.8 25 17-41 201-225 (758)
216 2cvh_A DNA repair and recombin 97.7 3.1E-05 1.1E-09 51.7 3.8 34 16-49 19-54 (220)
217 2v9p_A Replication protein E1; 97.7 3.1E-05 1E-09 55.5 3.9 26 16-41 125-150 (305)
218 3c5c_A RAS-like protein 12; GD 97.7 2.7E-05 9.2E-10 51.1 3.3 29 12-40 16-44 (187)
219 2w0m_A SSO2452; RECA, SSPF, un 97.7 3.4E-05 1.2E-09 51.8 3.8 33 16-48 22-59 (235)
220 1rj9_A FTSY, signal recognitio 97.7 4.2E-05 1.4E-09 54.7 4.4 26 16-41 101-126 (304)
221 2eyu_A Twitching motility prot 97.7 3.7E-05 1.3E-09 53.8 3.9 27 15-41 23-49 (261)
222 1htw_A HI0065; nucleotide-bind 97.7 4.2E-05 1.4E-09 49.7 3.9 27 15-41 31-57 (158)
223 2i3b_A HCR-ntpase, human cance 97.7 3.1E-05 1E-09 51.8 3.3 24 18-41 2-25 (189)
224 1sxj_D Activator 1 41 kDa subu 97.7 3E-05 1E-09 55.3 3.5 23 19-41 60-82 (353)
225 2il1_A RAB12; G-protein, GDP, 97.7 2.6E-05 8.9E-10 51.3 2.9 25 15-39 24-48 (192)
226 1ypw_A Transitional endoplasmi 97.7 1.4E-05 4.7E-10 64.0 1.8 32 16-47 510-541 (806)
227 1g8p_A Magnesium-chelatase 38 97.6 1.7E-05 5.9E-10 56.6 2.1 24 19-42 47-70 (350)
228 3e70_C DPA, signal recognition 97.6 4E-05 1.4E-09 55.4 4.0 27 15-41 127-153 (328)
229 3tif_A Uncharacterized ABC tra 97.6 3.1E-05 1.1E-09 53.3 3.3 25 16-40 30-54 (235)
230 2px0_A Flagellar biosynthesis 97.6 4.8E-05 1.6E-09 54.2 4.3 29 13-41 101-129 (296)
231 1sxj_C Activator 1 40 kDa subu 97.6 3.7E-05 1.2E-09 55.2 3.6 23 19-41 48-70 (340)
232 2vp4_A Deoxynucleoside kinase; 97.6 2.4E-05 8.2E-10 53.4 2.5 29 13-41 16-44 (230)
233 1r6b_X CLPA protein; AAA+, N-t 97.6 3.6E-05 1.2E-09 60.8 3.8 33 19-51 490-524 (758)
234 1vma_A Cell division protein F 97.6 4.1E-05 1.4E-09 54.8 3.8 27 15-41 102-128 (306)
235 2p5s_A RAS and EF-hand domain 97.6 4.4E-05 1.5E-09 50.4 3.6 29 12-40 23-51 (199)
236 3b9q_A Chloroplast SRP recepto 97.6 4.5E-05 1.5E-09 54.5 3.8 27 15-41 98-124 (302)
237 2ew1_A RAS-related protein RAB 97.6 3.6E-05 1.2E-09 51.4 3.0 25 15-39 24-48 (201)
238 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 4.3E-05 1.5E-09 58.1 3.8 25 18-42 42-66 (500)
239 1sxj_E Activator 1 40 kDa subu 97.6 3.9E-05 1.3E-09 55.0 3.3 23 19-41 38-60 (354)
240 1n0w_A DNA repair protein RAD5 97.6 4.2E-05 1.4E-09 51.9 3.2 25 16-40 23-47 (243)
241 3kl4_A SRP54, signal recogniti 97.6 6.9E-05 2.4E-09 56.1 4.6 28 14-41 94-121 (433)
242 1iqp_A RFCS; clamp loader, ext 97.6 5.7E-05 1.9E-09 53.2 3.9 23 19-41 48-70 (327)
243 2cbz_A Multidrug resistance-as 97.6 4.4E-05 1.5E-09 52.6 3.3 25 16-40 30-54 (237)
244 1np6_A Molybdopterin-guanine d 97.6 6E-05 2.1E-09 49.7 3.8 24 17-40 6-29 (174)
245 3dz8_A RAS-related protein RAB 97.6 2.4E-05 8.4E-10 51.3 1.9 25 16-40 22-46 (191)
246 1u0j_A DNA replication protein 97.6 7.2E-05 2.5E-09 52.7 4.3 24 18-41 105-128 (267)
247 2qen_A Walker-type ATPase; unk 97.6 6E-05 2.1E-09 53.4 4.0 33 18-50 32-64 (350)
248 1jr3_A DNA polymerase III subu 97.6 6.4E-05 2.2E-09 54.0 4.1 26 18-43 39-64 (373)
249 2pcj_A ABC transporter, lipopr 97.6 3.4E-05 1.2E-09 52.7 2.5 25 16-40 29-53 (224)
250 3pxi_A Negative regulator of g 97.6 6.3E-05 2.2E-09 59.5 4.4 35 19-53 523-562 (758)
251 3dm5_A SRP54, signal recogniti 97.6 9.1E-05 3.1E-09 55.6 4.9 27 15-41 98-124 (443)
252 1cr0_A DNA primase/helicase; R 97.5 5.6E-05 1.9E-09 53.2 3.6 25 16-40 34-58 (296)
253 1z2a_A RAS-related protein RAB 97.5 5.8E-05 2E-09 47.9 3.3 26 15-40 3-28 (168)
254 1b0u_A Histidine permease; ABC 97.5 5E-05 1.7E-09 53.1 3.2 25 16-40 31-55 (262)
255 1mv5_A LMRA, multidrug resista 97.5 5.1E-05 1.8E-09 52.4 3.2 25 16-40 27-51 (243)
256 1lw7_A Transcriptional regulat 97.5 5E-05 1.7E-09 55.2 3.2 27 17-43 170-196 (365)
257 3gfo_A Cobalt import ATP-bindi 97.5 4.3E-05 1.5E-09 53.9 2.7 25 16-40 33-57 (275)
258 2chq_A Replication factor C sm 97.5 6.5E-05 2.2E-09 52.7 3.6 23 19-41 40-62 (319)
259 2onk_A Molybdate/tungstate ABC 97.5 6.7E-05 2.3E-09 51.9 3.6 23 18-40 25-47 (240)
260 2olj_A Amino acid ABC transpor 97.5 5.8E-05 2E-09 52.9 3.2 25 16-40 49-73 (263)
261 2r2a_A Uncharacterized protein 97.5 7.8E-05 2.7E-09 50.2 3.7 25 16-40 4-28 (199)
262 2zu0_C Probable ATP-dependent 97.5 7.4E-05 2.5E-09 52.4 3.8 25 16-40 45-69 (267)
263 2ixe_A Antigen peptide transpo 97.5 6E-05 2E-09 53.0 3.3 25 16-40 44-68 (271)
264 2og2_A Putative signal recogni 97.5 7.2E-05 2.5E-09 54.7 3.8 27 15-41 155-181 (359)
265 4g1u_C Hemin import ATP-bindin 97.5 4.7E-05 1.6E-09 53.4 2.7 25 16-40 36-60 (266)
266 2orw_A Thymidine kinase; TMTK, 97.5 7.9E-05 2.7E-09 49.4 3.6 25 17-41 3-27 (184)
267 2ghi_A Transport protein; mult 97.5 6.3E-05 2.1E-09 52.6 3.3 25 16-40 45-69 (260)
268 2d2e_A SUFC protein; ABC-ATPas 97.5 6.4E-05 2.2E-09 52.2 3.3 24 16-39 28-51 (250)
269 3b85_A Phosphate starvation-in 97.5 6E-05 2E-09 51.1 3.0 23 17-39 22-44 (208)
270 2f1r_A Molybdopterin-guanine d 97.5 2.9E-05 9.8E-10 51.1 1.4 24 18-41 3-26 (171)
271 2ff7_A Alpha-hemolysin translo 97.5 5.1E-05 1.8E-09 52.6 2.7 25 16-40 34-58 (247)
272 1gwn_A RHO-related GTP-binding 97.5 6.5E-05 2.2E-09 50.2 3.1 26 15-40 26-51 (205)
273 1g6h_A High-affinity branched- 97.5 5.3E-05 1.8E-09 52.8 2.7 25 16-40 32-56 (257)
274 2dr3_A UPF0273 protein PH0284; 97.5 8.2E-05 2.8E-09 50.4 3.6 34 16-49 22-60 (247)
275 1vpl_A ABC transporter, ATP-bi 97.5 6.8E-05 2.3E-09 52.3 3.2 25 16-40 40-64 (256)
276 1sxj_B Activator 1 37 kDa subu 97.5 8.2E-05 2.8E-09 52.3 3.7 23 19-41 44-66 (323)
277 1ji0_A ABC transporter; ATP bi 97.5 5.6E-05 1.9E-09 52.2 2.7 25 16-40 31-55 (240)
278 2lkc_A Translation initiation 97.5 0.00012 4.1E-09 46.9 4.2 26 14-39 5-30 (178)
279 2fn4_A P23, RAS-related protei 97.5 9.5E-05 3.2E-09 47.4 3.6 26 15-40 7-32 (181)
280 1sgw_A Putative ABC transporte 97.5 5.2E-05 1.8E-09 51.6 2.4 25 16-40 34-58 (214)
281 2yz2_A Putative ABC transporte 97.5 7.4E-05 2.5E-09 52.3 3.3 25 16-40 32-56 (266)
282 1qvr_A CLPB protein; coiled co 97.5 5.5E-05 1.9E-09 60.7 2.8 25 17-41 191-215 (854)
283 1oix_A RAS-related protein RAB 97.5 8.3E-05 2.8E-09 49.0 3.2 24 17-40 29-52 (191)
284 2pze_A Cystic fibrosis transme 97.4 6.3E-05 2.1E-09 51.6 2.7 25 16-40 33-57 (229)
285 2f9l_A RAB11B, member RAS onco 97.4 9.3E-05 3.2E-09 48.9 3.4 24 17-40 5-28 (199)
286 2ewv_A Twitching motility prot 97.4 9.6E-05 3.3E-09 54.2 3.8 27 15-41 134-160 (372)
287 3tqf_A HPR(Ser) kinase; transf 97.4 0.0001 3.4E-09 49.0 3.4 32 17-49 16-47 (181)
288 1nlf_A Regulatory protein REPA 97.4 9.4E-05 3.2E-09 51.7 3.4 24 16-39 29-52 (279)
289 2yhs_A FTSY, cell division pro 97.4 0.0001 3.6E-09 56.1 3.9 27 15-41 291-317 (503)
290 1kao_A RAP2A; GTP-binding prot 97.4 0.0001 3.5E-09 46.5 3.3 24 17-40 3-26 (167)
291 2dyk_A GTP-binding protein; GT 97.4 0.00011 3.7E-09 46.3 3.4 23 18-40 2-24 (161)
292 2nzj_A GTP-binding protein REM 97.4 0.0001 3.6E-09 47.0 3.3 25 16-40 3-27 (175)
293 2qi9_C Vitamin B12 import ATP- 97.4 7.3E-05 2.5E-09 52.0 2.7 25 16-40 25-49 (249)
294 2ihy_A ABC transporter, ATP-bi 97.4 7.2E-05 2.4E-09 52.9 2.7 25 16-40 46-70 (279)
295 2g6b_A RAS-related protein RAB 97.4 0.00011 3.6E-09 47.3 3.4 29 12-40 5-33 (180)
296 2ged_A SR-beta, signal recogni 97.4 0.00014 4.8E-09 47.4 3.9 26 15-40 46-71 (193)
297 2wjg_A FEOB, ferrous iron tran 97.4 0.00014 4.7E-09 47.2 3.8 24 16-39 6-29 (188)
298 2gza_A Type IV secretion syste 97.4 9E-05 3.1E-09 54.0 3.2 26 16-41 174-199 (361)
299 3fvq_A Fe(3+) IONS import ATP- 97.4 0.00011 3.7E-09 53.8 3.6 24 16-39 29-52 (359)
300 2q3h_A RAS homolog gene family 97.4 0.00012 3.9E-09 48.2 3.4 28 12-39 15-42 (201)
301 1nrj_B SR-beta, signal recogni 97.4 0.00014 4.8E-09 48.5 3.9 27 14-40 9-35 (218)
302 1ojl_A Transcriptional regulat 97.4 9E-05 3.1E-09 52.7 3.1 24 17-40 25-48 (304)
303 1upt_A ARL1, ADP-ribosylation 97.4 0.00016 5.6E-09 45.9 4.0 25 15-39 5-29 (171)
304 2ce2_X GTPase HRAS; signaling 97.4 0.00011 3.7E-09 46.3 3.1 23 18-40 4-26 (166)
305 2hxs_A RAB-26, RAS-related pro 97.4 0.00014 4.7E-09 46.7 3.7 26 15-40 4-29 (178)
306 1ky3_A GTP-binding protein YPT 97.4 0.00012 4E-09 47.0 3.3 26 15-40 6-31 (182)
307 2gj8_A MNME, tRNA modification 97.4 0.00011 3.9E-09 47.5 3.3 25 16-40 3-27 (172)
308 1fzq_A ADP-ribosylation factor 97.4 0.00012 4.2E-09 47.6 3.4 28 13-40 12-39 (181)
309 3kkq_A RAS-related protein M-R 97.4 0.00014 4.8E-09 47.0 3.7 27 14-40 15-41 (183)
310 1z6t_A APAF-1, apoptotic prote 97.4 0.00021 7.2E-09 54.6 5.2 24 16-39 146-169 (591)
311 2nq2_C Hypothetical ABC transp 97.4 8.2E-05 2.8E-09 51.8 2.7 25 16-40 30-54 (253)
312 3oes_A GTPase rhebl1; small GT 97.4 0.00011 3.7E-09 48.6 3.1 27 14-40 21-47 (201)
313 3p32_A Probable GTPase RV1496/ 97.4 0.00014 4.6E-09 52.9 3.9 27 15-41 77-103 (355)
314 3clv_A RAB5 protein, putative; 97.4 0.00016 5.5E-09 47.1 3.9 26 15-40 5-30 (208)
315 2wsm_A Hydrogenase expression/ 97.4 0.00013 4.6E-09 48.7 3.6 26 16-41 29-54 (221)
316 2hf9_A Probable hydrogenase ni 97.4 0.00014 4.7E-09 48.8 3.7 26 16-41 37-62 (226)
317 2yyz_A Sugar ABC transporter, 97.4 0.00013 4.5E-09 53.4 3.8 24 16-39 28-51 (359)
318 3sop_A Neuronal-specific septi 97.4 0.0001 3.5E-09 51.8 3.1 25 17-41 2-26 (270)
319 1u8z_A RAS-related protein RAL 97.4 0.00015 5.1E-09 45.8 3.6 24 17-40 4-27 (168)
320 2hup_A RAS-related protein RAB 97.4 0.0001 3.4E-09 48.9 2.9 26 14-39 26-51 (201)
321 2wji_A Ferrous iron transport 97.4 0.00012 4.2E-09 46.9 3.2 23 17-39 3-25 (165)
322 2qm8_A GTPase/ATPase; G protei 97.4 0.00013 4.5E-09 52.7 3.7 25 15-39 53-77 (337)
323 1moz_A ARL1, ADP-ribosylation 97.4 8.7E-05 3E-09 47.9 2.5 25 15-39 16-40 (183)
324 2bov_A RAla, RAS-related prote 97.4 0.00014 4.9E-09 47.7 3.6 27 14-40 11-37 (206)
325 3rlf_A Maltose/maltodextrin im 97.4 0.00013 4.6E-09 53.7 3.8 24 16-39 28-51 (381)
326 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00013 4.4E-09 57.7 3.8 26 16-41 206-231 (758)
327 2it1_A 362AA long hypothetical 97.4 0.00014 4.9E-09 53.2 3.8 24 16-39 28-51 (362)
328 2zej_A Dardarin, leucine-rich 97.4 0.00011 3.7E-09 47.9 2.8 22 18-39 3-24 (184)
329 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.00013 4.3E-09 52.9 3.3 31 18-48 124-156 (331)
330 1qvr_A CLPB protein; coiled co 97.3 0.0001 3.5E-09 59.2 3.2 24 18-41 589-612 (854)
331 3bc1_A RAS-related protein RAB 97.3 0.00014 4.9E-09 47.1 3.4 25 15-39 9-33 (195)
332 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00011 3.9E-09 55.3 3.2 25 16-40 137-161 (460)
333 1v43_A Sugar-binding transport 97.3 0.00015 5E-09 53.3 3.8 24 16-39 36-59 (372)
334 3jvv_A Twitching mobility prot 97.3 0.00016 5.4E-09 52.8 3.9 25 17-41 123-147 (356)
335 1m2o_B GTP-binding protein SAR 97.3 0.00014 4.8E-09 47.7 3.3 27 13-39 19-45 (190)
336 3pqc_A Probable GTP-binding pr 97.3 0.00026 9E-09 45.9 4.6 26 15-40 21-46 (195)
337 1a5t_A Delta prime, HOLB; zinc 97.3 0.00019 6.3E-09 51.6 4.1 28 17-44 24-51 (334)
338 1g16_A RAS-related protein SEC 97.3 0.00014 4.8E-09 46.1 3.1 23 17-39 3-25 (170)
339 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00012 4.2E-09 46.9 2.9 24 16-39 6-29 (177)
340 1c1y_A RAS-related protein RAP 97.3 0.00016 5.3E-09 45.8 3.3 23 17-39 3-25 (167)
341 2gco_A H9, RHO-related GTP-bin 97.3 0.0002 6.8E-09 47.3 3.9 29 12-40 20-48 (201)
342 3q72_A GTP-binding protein RAD 97.3 0.00015 5.3E-09 45.9 3.3 23 17-39 2-24 (166)
343 1z47_A CYSA, putative ABC-tran 97.3 0.00013 4.5E-09 53.3 3.3 24 16-39 40-63 (355)
344 2erx_A GTP-binding protein DI- 97.3 0.00015 5.1E-09 46.0 3.2 23 17-39 3-25 (172)
345 1svi_A GTP-binding protein YSX 97.3 0.00019 6.5E-09 46.8 3.8 26 15-40 21-46 (195)
346 1zu4_A FTSY; GTPase, signal re 97.3 0.00018 6.1E-09 51.8 3.8 27 15-41 103-129 (320)
347 2pjz_A Hypothetical protein ST 97.3 0.00014 4.6E-09 51.0 3.1 24 17-40 30-53 (263)
348 3tui_C Methionine import ATP-b 97.3 0.00018 6E-09 52.8 3.8 25 16-40 53-77 (366)
349 1z08_A RAS-related protein RAB 97.3 0.00014 4.8E-09 46.2 2.9 25 16-40 5-29 (170)
350 2v3c_C SRP54, signal recogniti 97.3 0.00014 4.6E-09 54.5 3.2 34 16-49 98-136 (432)
351 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00016 5.4E-09 47.0 3.1 26 15-40 5-30 (184)
352 2www_A Methylmalonic aciduria 97.3 0.00019 6.5E-09 52.1 3.8 25 16-40 73-97 (349)
353 2y8e_A RAB-protein 6, GH09086P 97.3 0.00013 4.4E-09 46.7 2.7 24 16-39 13-36 (179)
354 3q85_A GTP-binding protein REM 97.3 0.00018 6.1E-09 45.7 3.3 22 18-39 3-24 (169)
355 3tw8_B RAS-related protein RAB 97.3 0.00014 4.7E-09 46.6 2.8 25 15-39 7-31 (181)
356 2b6h_A ADP-ribosylation factor 97.3 0.00019 6.7E-09 47.1 3.6 27 13-39 25-51 (192)
357 2bbs_A Cystic fibrosis transme 97.3 0.00014 4.9E-09 51.6 3.1 25 16-40 63-87 (290)
358 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00015 5.1E-09 46.9 2.9 25 16-40 3-27 (189)
359 1pzn_A RAD51, DNA repair and r 97.3 0.00014 4.8E-09 52.8 3.0 26 16-41 130-155 (349)
360 1r2q_A RAS-related protein RAB 97.3 0.0001 3.5E-09 46.7 2.1 24 16-39 5-28 (170)
361 1g29_1 MALK, maltose transport 97.3 0.00015 5.3E-09 53.2 3.3 24 16-39 28-51 (372)
362 2a9k_A RAS-related protein RAL 97.3 0.00019 6.4E-09 46.2 3.3 26 15-40 16-41 (187)
363 3nh6_A ATP-binding cassette SU 97.3 9.3E-05 3.2E-09 53.0 2.0 26 16-41 79-104 (306)
364 3ozx_A RNAse L inhibitor; ATP 97.3 0.00018 6.1E-09 55.2 3.6 30 11-40 19-48 (538)
365 3d31_A Sulfate/molybdate ABC t 97.3 0.00012 4E-09 53.4 2.5 24 16-39 25-48 (348)
366 1pui_A ENGB, probable GTP-bind 97.3 9.1E-05 3.1E-09 49.1 1.8 25 15-39 24-48 (210)
367 3k1j_A LON protease, ATP-depen 97.3 0.00017 5.8E-09 55.8 3.5 25 18-42 61-85 (604)
368 1z0f_A RAB14, member RAS oncog 97.3 0.00017 6E-09 46.1 3.1 26 15-40 13-38 (179)
369 2cjw_A GTP-binding protein GEM 97.3 0.00024 8.1E-09 46.8 3.8 27 14-40 3-29 (192)
370 3gd7_A Fusion complex of cysti 97.3 0.00019 6.5E-09 53.0 3.6 24 16-39 46-69 (390)
371 2f7s_A C25KG, RAS-related prot 97.3 0.00017 5.8E-09 48.0 3.1 25 15-39 23-47 (217)
372 1zj6_A ADP-ribosylation factor 97.3 0.00017 5.8E-09 46.9 3.0 25 15-39 14-38 (187)
373 1ek0_A Protein (GTP-binding pr 97.3 0.00021 7.3E-09 45.2 3.4 24 17-40 3-26 (170)
374 1ni3_A YCHF GTPase, YCHF GTP-b 97.3 0.00027 9.3E-09 52.2 4.4 28 12-39 15-42 (392)
375 1z0j_A RAB-22, RAS-related pro 97.3 0.00021 7.3E-09 45.3 3.4 25 16-40 5-29 (170)
376 2atv_A RERG, RAS-like estrogen 97.3 0.00023 7.9E-09 46.7 3.7 27 14-40 25-51 (196)
377 1f6b_A SAR1; gtpases, N-termin 97.3 0.0002 6.8E-09 47.4 3.4 27 13-39 21-47 (198)
378 2b8t_A Thymidine kinase; deoxy 97.3 0.00023 8E-09 48.8 3.7 27 15-41 10-36 (223)
379 2i1q_A DNA repair and recombin 97.3 0.00012 4E-09 52.3 2.3 25 16-40 97-121 (322)
380 3lxw_A GTPase IMAP family memb 97.3 0.00018 6.2E-09 49.6 3.2 25 15-39 19-43 (247)
381 1p9r_A General secretion pathw 97.3 0.00023 7.9E-09 53.0 4.0 26 16-41 166-191 (418)
382 1p6x_A Thymidine kinase; P-loo 97.3 0.00011 3.8E-09 53.3 2.2 28 16-43 6-33 (334)
383 1ksh_A ARF-like protein 2; sma 97.3 0.00022 7.4E-09 46.3 3.4 26 15-40 16-41 (186)
384 3bwd_D RAC-like GTP-binding pr 97.2 0.00026 8.8E-09 45.5 3.8 26 15-40 6-31 (182)
385 3t1o_A Gliding protein MGLA; G 97.2 0.00021 7.3E-09 46.4 3.4 28 15-42 12-39 (198)
386 3tkl_A RAS-related protein RAB 97.2 0.00021 7.3E-09 46.5 3.4 27 14-40 13-39 (196)
387 2fg5_A RAB-22B, RAS-related pr 97.2 0.00016 5.5E-09 47.4 2.8 26 15-40 21-46 (192)
388 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.5E-09 48.9 3.2 27 14-40 26-52 (239)
389 1r8s_A ADP-ribosylation factor 97.2 0.00027 9.1E-09 44.7 3.6 23 18-40 1-23 (164)
390 2efe_B Small GTP-binding prote 97.2 0.00019 6.4E-09 46.2 2.9 26 15-40 10-35 (181)
391 3hr8_A Protein RECA; alpha and 97.2 0.00022 7.6E-09 52.1 3.6 35 16-50 60-99 (356)
392 2o52_A RAS-related protein RAB 97.2 0.00017 5.8E-09 47.7 2.7 24 16-39 24-47 (200)
393 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00015 5.2E-09 52.3 2.5 25 17-41 171-195 (330)
394 2bme_A RAB4A, RAS-related prot 97.2 0.00019 6.5E-09 46.4 2.7 25 16-40 9-33 (186)
395 2j37_W Signal recognition part 97.2 0.00025 8.5E-09 54.1 3.7 27 15-41 99-125 (504)
396 3f9v_A Minichromosome maintena 97.2 9.5E-05 3.2E-09 57.3 1.4 27 17-43 327-353 (595)
397 1vg8_A RAS-related protein RAB 97.2 0.00025 8.6E-09 46.7 3.3 26 15-40 6-31 (207)
398 2fv8_A H6, RHO-related GTP-bin 97.2 0.00015 5E-09 48.2 2.1 25 16-40 24-48 (207)
399 1yrb_A ATP(GTP)binding protein 97.2 0.00032 1.1E-08 48.1 3.9 26 15-40 12-37 (262)
400 2qu8_A Putative nucleolar GTP- 97.2 0.00036 1.2E-08 47.1 4.1 27 14-40 26-52 (228)
401 1oxx_K GLCV, glucose, ABC tran 97.2 0.00012 4.2E-09 53.3 1.8 24 16-39 30-53 (353)
402 2gf0_A GTP-binding protein DI- 97.2 0.00034 1.2E-08 45.7 3.8 24 16-39 7-30 (199)
403 2cxx_A Probable GTP-binding pr 97.2 0.00024 8.3E-09 46.0 3.0 23 18-40 2-24 (190)
404 1zcb_A G alpha I/13; GTP-bindi 97.2 0.00028 9.7E-09 51.6 3.6 27 15-41 31-57 (362)
405 2j1l_A RHO-related GTP-binding 97.2 0.00026 9E-09 47.3 3.2 26 14-39 31-56 (214)
406 2r8r_A Sensor protein; KDPD, P 97.2 0.0004 1.4E-08 47.8 4.1 34 16-49 5-43 (228)
407 2oap_1 GSPE-2, type II secreti 97.1 0.00023 7.9E-09 54.3 3.1 26 16-41 259-284 (511)
408 2zts_A Putative uncharacterize 97.1 0.00031 1.1E-08 47.5 3.5 24 16-39 29-52 (251)
409 3t5g_A GTP-binding protein RHE 97.1 0.0002 6.7E-09 46.2 2.3 24 16-39 5-28 (181)
410 2fh5_B SR-beta, signal recogni 97.1 0.00033 1.1E-08 46.5 3.5 26 15-40 5-30 (214)
411 3lda_A DNA repair protein RAD5 97.1 0.00029 9.9E-09 52.2 3.4 23 16-38 177-199 (400)
412 3reg_A RHO-like small GTPase; 97.1 0.00027 9.1E-09 46.2 3.0 29 12-40 18-46 (194)
413 1ls1_A Signal recognition part 97.1 0.00042 1.5E-08 49.2 4.2 29 12-41 94-122 (295)
414 2zr9_A Protein RECA, recombina 97.1 0.00032 1.1E-08 51.0 3.6 35 16-50 60-99 (349)
415 3cbq_A GTP-binding protein REM 97.1 0.00022 7.5E-09 47.1 2.5 25 15-39 21-45 (195)
416 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00035 1.2E-08 45.0 3.4 24 16-39 4-27 (186)
417 3k53_A Ferrous iron transport 97.1 0.00031 1E-08 48.9 3.3 24 17-40 3-26 (271)
418 1j8m_F SRP54, signal recogniti 97.1 0.00036 1.2E-08 49.7 3.7 26 16-41 97-122 (297)
419 2p67_A LAO/AO transport system 97.1 0.00035 1.2E-08 50.5 3.7 26 15-40 54-79 (341)
420 1v5w_A DMC1, meiotic recombina 97.1 0.00037 1.3E-08 50.4 3.7 25 16-40 121-145 (343)
421 3cph_A RAS-related protein SEC 97.1 0.00039 1.3E-08 45.9 3.5 26 14-39 17-42 (213)
422 3kta_A Chromosome segregation 97.1 0.00034 1.2E-08 45.5 3.1 23 19-41 28-50 (182)
423 2fna_A Conserved hypothetical 97.1 0.00037 1.3E-08 49.3 3.6 32 18-49 31-64 (357)
424 2x77_A ADP-ribosylation factor 97.1 0.00027 9.3E-09 46.0 2.6 25 15-39 20-44 (189)
425 1w5s_A Origin recognition comp 97.1 0.00027 9.3E-09 51.3 2.9 26 16-41 49-76 (412)
426 2xtp_A GTPase IMAP family memb 97.1 0.00036 1.2E-08 48.0 3.4 27 14-40 19-45 (260)
427 1zbd_A Rabphilin-3A; G protein 97.1 0.00039 1.3E-08 45.7 3.3 25 16-40 7-31 (203)
428 2iwr_A Centaurin gamma 1; ANK 97.1 0.00025 8.7E-09 45.5 2.4 25 16-40 6-30 (178)
429 4gzl_A RAS-related C3 botulinu 97.1 0.00041 1.4E-08 46.0 3.4 26 14-39 27-52 (204)
430 2xxa_A Signal recognition part 97.1 0.00046 1.6E-08 51.6 3.9 27 15-41 98-124 (433)
431 1x3s_A RAS-related protein RAB 97.0 0.00045 1.6E-08 44.8 3.4 25 16-40 14-38 (195)
432 3j16_B RLI1P; ribosome recycli 97.0 0.00054 1.9E-08 53.3 4.2 28 13-40 99-126 (608)
433 2z43_A DNA repair and recombin 97.0 0.00042 1.4E-08 49.6 3.3 25 16-40 106-130 (324)
434 3a1s_A Iron(II) transport prot 97.0 0.00036 1.2E-08 48.5 2.8 25 15-39 3-27 (258)
435 3o47_A ADP-ribosylation factor 97.0 0.00051 1.7E-08 49.3 3.6 28 12-39 160-187 (329)
436 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00049 1.7E-08 52.7 3.7 26 15-40 45-70 (538)
437 1u94_A RECA protein, recombina 97.0 0.00054 1.9E-08 50.0 3.8 34 16-49 62-100 (356)
438 2bcg_Y Protein YP2, GTP-bindin 97.0 0.00048 1.6E-08 45.4 3.3 24 16-39 7-30 (206)
439 1of1_A Thymidine kinase; trans 97.0 0.0003 1E-08 51.8 2.4 28 15-42 47-74 (376)
440 2rcn_A Probable GTPase ENGC; Y 97.0 0.00051 1.7E-08 50.2 3.6 25 17-41 215-239 (358)
441 3q3j_B RHO-related GTP-binding 97.0 0.00057 2E-08 45.7 3.5 28 13-40 23-50 (214)
442 2qag_B Septin-6, protein NEDD5 97.0 0.00045 1.6E-08 51.6 3.3 22 19-40 44-65 (427)
443 3upu_A ATP-dependent DNA helic 97.0 0.00049 1.7E-08 51.5 3.5 23 19-41 47-69 (459)
444 3b5x_A Lipid A export ATP-bind 97.0 0.00052 1.8E-08 52.9 3.6 26 16-41 368-393 (582)
445 3bh0_A DNAB-like replicative h 97.0 0.00062 2.1E-08 48.6 3.8 33 16-48 67-104 (315)
446 1xp8_A RECA protein, recombina 97.0 0.00058 2E-08 50.0 3.6 35 16-50 73-112 (366)
447 3b60_A Lipid A export ATP-bind 97.0 0.00046 1.6E-08 53.2 3.2 26 16-41 368-393 (582)
448 1nij_A Hypothetical protein YJ 97.0 0.00043 1.5E-08 49.5 2.8 24 17-40 4-27 (318)
449 1xx6_A Thymidine kinase; NESG, 96.9 0.00081 2.8E-08 44.9 3.9 27 15-41 6-32 (191)
450 2yv5_A YJEQ protein; hydrolase 96.9 0.00066 2.3E-08 48.3 3.6 24 17-41 165-188 (302)
451 1e2k_A Thymidine kinase; trans 96.9 0.00031 1E-08 50.9 1.9 26 17-42 4-29 (331)
452 2fu5_C RAS-related protein RAB 96.9 0.00032 1.1E-08 45.3 1.8 24 16-39 7-30 (183)
453 2j0v_A RAC-like GTP-binding pr 96.9 0.00068 2.3E-08 44.9 3.4 25 16-40 8-32 (212)
454 1tf7_A KAIC; homohexamer, hexa 96.9 0.00051 1.7E-08 52.3 3.1 22 16-37 38-59 (525)
455 3e1s_A Exodeoxyribonuclease V, 96.9 0.00067 2.3E-08 52.4 3.7 24 17-40 204-227 (574)
456 1tq4_A IIGP1, interferon-induc 96.9 0.00061 2.1E-08 50.7 3.4 23 17-39 69-91 (413)
457 2obl_A ESCN; ATPase, hydrolase 96.9 0.00067 2.3E-08 49.3 3.5 26 16-41 70-95 (347)
458 2ffh_A Protein (FFH); SRP54, s 96.9 0.00087 3E-08 50.1 4.2 26 16-41 97-122 (425)
459 3iev_A GTP-binding protein ERA 96.9 0.00056 1.9E-08 48.7 3.0 28 12-39 5-32 (308)
460 2dpy_A FLII, flagellum-specifi 96.9 0.00072 2.5E-08 50.6 3.7 26 16-41 156-181 (438)
461 2atx_A Small GTP binding prote 96.9 0.0007 2.4E-08 44.1 3.2 25 16-40 17-41 (194)
462 2yc2_C IFT27, small RAB-relate 96.9 0.00011 3.9E-09 48.3 -0.7 26 15-40 18-43 (208)
463 3cpj_B GTP-binding protein YPT 96.9 0.00066 2.2E-08 45.5 3.1 25 15-39 11-35 (223)
464 2r6a_A DNAB helicase, replicat 96.9 0.00083 2.8E-08 50.2 3.9 33 16-48 202-240 (454)
465 2qnr_A Septin-2, protein NEDD5 96.9 0.00057 2E-08 48.6 2.9 25 15-39 16-40 (301)
466 3qf4_B Uncharacterized ABC tra 96.9 0.00051 1.7E-08 53.2 2.7 26 16-41 380-405 (598)
467 1ko7_A HPR kinase/phosphatase; 96.9 0.00075 2.6E-08 48.5 3.4 32 17-49 144-175 (314)
468 2yl4_A ATP-binding cassette SU 96.9 0.0005 1.7E-08 53.1 2.6 25 17-41 370-394 (595)
469 1u0l_A Probable GTPase ENGC; p 96.9 0.00061 2.1E-08 48.3 2.9 23 17-39 169-191 (301)
470 3gj0_A GTP-binding nuclear pro 96.9 0.00078 2.7E-08 45.0 3.3 26 12-37 10-35 (221)
471 3sfz_A APAF-1, apoptotic pepti 96.8 0.003 1E-07 51.6 7.2 26 15-40 145-170 (1249)
472 4dhe_A Probable GTP-binding pr 96.8 0.00042 1.4E-08 46.2 1.8 26 15-40 27-52 (223)
473 1tf7_A KAIC; homohexamer, hexa 96.8 0.00078 2.7E-08 51.3 3.4 25 16-40 280-304 (525)
474 4djt_A GTP-binding nuclear pro 96.8 0.00026 8.8E-09 47.2 0.7 26 14-39 8-33 (218)
475 1ega_A Protein (GTP-binding pr 96.8 0.00071 2.4E-08 48.0 3.0 25 16-40 7-31 (301)
476 1yqt_A RNAse L inhibitor; ATP- 96.8 0.00077 2.6E-08 51.6 3.2 25 16-40 311-335 (538)
477 3b1v_A Ferrous iron uptake tra 96.8 0.00093 3.2E-08 46.9 3.4 24 17-40 3-26 (272)
478 3th5_A RAS-related C3 botulinu 95.8 0.00021 7E-09 47.2 0.0 27 13-39 26-52 (204)
479 3ozx_A RNAse L inhibitor; ATP 96.8 0.00065 2.2E-08 52.1 2.7 25 16-40 293-317 (538)
480 4dkx_A RAS-related protein RAB 96.8 0.0011 3.8E-08 44.9 3.5 26 14-39 10-35 (216)
481 3c5h_A Glucocorticoid receptor 96.8 0.0014 4.9E-08 45.2 4.2 28 12-39 14-50 (255)
482 3iby_A Ferrous iron transport 96.8 0.00091 3.1E-08 46.4 3.2 23 18-40 2-24 (256)
483 4a82_A Cystic fibrosis transme 96.8 0.00043 1.5E-08 53.3 1.6 26 16-41 366-391 (578)
484 1mky_A Probable GTP-binding pr 96.7 0.0011 3.7E-08 49.4 3.7 25 16-40 179-203 (439)
485 2g3y_A GTP-binding protein GEM 96.7 0.0011 3.7E-08 44.7 3.3 25 15-39 35-59 (211)
486 2ohf_A Protein OLA1, GTP-bindi 96.7 0.0012 4E-08 49.0 3.7 29 12-40 17-45 (396)
487 3bk7_A ABC transporter ATP-bin 96.7 0.00089 3E-08 52.1 3.2 27 14-40 114-140 (607)
488 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0011 3.7E-08 48.5 3.5 25 16-40 34-58 (392)
489 3euj_A Chromosome partition pr 96.7 0.0011 3.8E-08 50.3 3.6 23 18-40 30-52 (483)
490 3bk7_A ABC transporter ATP-bin 96.7 0.00093 3.2E-08 52.0 3.2 25 16-40 381-405 (607)
491 2qag_C Septin-7; cell cycle, c 96.7 0.00085 2.9E-08 50.0 2.9 28 13-40 27-54 (418)
492 3qf4_A ABC transporter, ATP-bi 96.7 0.00061 2.1E-08 52.6 2.1 26 16-41 368-393 (587)
493 1knx_A Probable HPR(Ser) kinas 96.7 0.0011 3.7E-08 47.7 3.2 32 17-49 147-178 (312)
494 1osn_A Thymidine kinase, VZV-T 96.7 0.00066 2.3E-08 49.4 2.0 29 14-42 9-38 (341)
495 3i8s_A Ferrous iron transport 96.7 0.0013 4.4E-08 46.0 3.4 24 17-40 3-26 (274)
496 1wf3_A GTP-binding protein; GT 96.7 0.0011 3.9E-08 47.0 3.2 25 16-40 6-30 (301)
497 2q6t_A DNAB replication FORK h 96.7 0.0015 5E-08 48.8 3.8 33 16-48 199-237 (444)
498 1vt4_I APAF-1 related killer D 96.6 0.0022 7.7E-08 53.1 5.0 23 17-39 150-172 (1221)
499 3cmu_A Protein RECA, recombina 96.6 0.00072 2.5E-08 58.7 2.3 38 15-52 1425-1467(2050)
500 3io5_A Recombination and repai 96.6 0.0013 4.4E-08 47.6 3.3 32 19-50 30-68 (333)
No 1
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.97 E-value=6.3e-31 Score=181.44 Aligned_cols=106 Identities=42% Similarity=0.629 Sum_probs=97.5
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK 91 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~ 91 (119)
...+++..|+|+|||||||+|+|+.|+++||+.|||++|++++++..+++++..++.++..|.++|++++..++.+++.+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~ 103 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK 103 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred C-CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 92 P-ECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 92 ~-~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
. ++.+||||||||||.+|++.|++.+
T Consensus 104 ~~~~~~g~ilDGfPRt~~Qa~~l~~~~ 130 (217)
T 3umf_A 104 LVDKNCHFLIDGYPRELDQGIKFEKEV 130 (217)
T ss_dssp HTTTCSEEEEETBCSSHHHHHHHHHHT
T ss_pred ccccccCcccccCCCcHHHHHHHHHhC
Confidence 4 4567999999999999999998765
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.97 E-value=1e-30 Score=179.17 Aligned_cols=98 Identities=48% Similarity=0.789 Sum_probs=92.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|||||||+|+|+.|+++||+.|||+++++|+++..++++|..++.++.+|.++|++++..++.+++.+. .|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~---~~ 77 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GN 77 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS---SC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC---Cc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999764 48
Q ss_pred EEEeCCCCCHHHHHHHHHHhh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l~ 118 (119)
|||||||||..||+.|++.+.
T Consensus 78 ~ilDGfPRt~~Qa~~l~~~l~ 98 (206)
T 3sr0_A 78 VIFDGFPRTVKQAEALDEMLE 98 (206)
T ss_dssp EEEESCCCSHHHHHHHHHHHH
T ss_pred eEecCCchhHHHHHHHHhhHH
Confidence 999999999999999988764
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.95 E-value=5.4e-28 Score=167.82 Aligned_cols=102 Identities=47% Similarity=0.847 Sum_probs=94.8
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE 93 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~ 93 (119)
.+..+++.|+|+|||||||+|+.|+++||+.|+|+++++++++..+++++..+++++.+|..+|++++..++.++|.+.+
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~ 84 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD 84 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG
T ss_pred cccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCcEEEeCCCCCHHHHHHHHH
Q psy9244 94 CQNGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 94 ~~~g~vldg~P~~~~q~~~l~~ 115 (119)
+.+||||||||||.+|++.|++
T Consensus 85 ~~~g~ILDGfPRt~~Qa~~L~~ 106 (230)
T 3gmt_A 85 CANGYLFDGFPRTIAQADAMKE 106 (230)
T ss_dssp GTTCEEEESCCCSHHHHHHHHH
T ss_pred cCCCeEecCCCCcHHHHHHHHH
Confidence 8889999999999999999875
No 4
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.93 E-value=1.2e-25 Score=155.70 Aligned_cols=116 Identities=66% Similarity=1.066 Sum_probs=96.0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHH
Q psy9244 2 APLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81 (119)
Q Consensus 2 ~~~~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (119)
+||+++..|.+.+..+.+|+|+|+|||||||+|+.|++++++.++++++++++....++..+..+++++..|..++++++
T Consensus 1 ~~~~~~~~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~ 80 (233)
T 1ak2_A 1 APNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV 80 (233)
T ss_dssp -------------CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHH
Confidence 57788888888888899999999999999999999999999999999999999888888899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 82 VDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 82 ~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
..++..++....+..|||+||||++..|++.|.+++
T Consensus 81 ~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l 116 (233)
T 1ak2_A 81 LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLM 116 (233)
T ss_dssp HHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHH
Confidence 999999998766678999999999999999887765
No 5
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.92 E-value=2.5e-24 Score=150.28 Aligned_cols=103 Identities=47% Similarity=0.876 Sum_probs=97.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC 94 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~ 94 (119)
.++.+|+|+|+|||||||+|+.|++++|+.|+|+++++++....+++.+..+++++..|..++++++..++..++...++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~~l 117 (119)
..+||+||||++..|++.|++.+
T Consensus 107 ~~~~ildg~p~~~~q~~~l~~~l 129 (243)
T 3tlx_A 107 KKGFILDGYPRNVKQAEDLNKLL 129 (243)
T ss_dssp SSEEEEESCCCSHHHHHHHHHHH
T ss_pred cCCEEecCCCCcHHHHHHHHHHH
Confidence 88999999999999999998765
No 6
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.90 E-value=6.9e-23 Score=139.84 Aligned_cols=100 Identities=46% Similarity=0.838 Sum_probs=94.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|++++|+.++++++++++....+++.+..+.+++..|..++++++..++..++...++..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred EEEeCCCCCHHHHHHHHHHh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l 117 (119)
||+||||++..|++.+.+.+
T Consensus 81 ~ildg~p~~~~~~~~~~~~~ 100 (216)
T 3dl0_A 81 FLLDGFPRTVAQAEALEEIL 100 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999998765
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.89 E-value=5.7e-23 Score=140.85 Aligned_cols=101 Identities=48% Similarity=0.885 Sum_probs=91.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~ 96 (119)
+.+|+|+|+|||||||+|+.|++++++.++++|+++++....+++.+..+++++..|..++++.+.+++..++....+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~ 84 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN 84 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence 46899999999999999999999999999999999999888888889999999988999999999999999998776778
Q ss_pred cEEEeCCCCCHHHHHHHHHHh
Q psy9244 97 GFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 97 g~vldg~P~~~~q~~~l~~~l 117 (119)
+||+||||++.+|++.+++.+
T Consensus 85 ~~i~dg~~~~~~~~~~l~~~l 105 (217)
T 3be4_A 85 GFVLDGFPRTIPQAEGLAKIL 105 (217)
T ss_dssp CEEEESCCCSHHHHHHHHHHH
T ss_pred CEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999888654
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.89 E-value=1.1e-22 Score=139.46 Aligned_cols=103 Identities=50% Similarity=1.005 Sum_probs=92.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc-CCC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLD-KPE 93 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~-~~~ 93 (119)
+++..|+|+|+|||||||+|+.|++++++.++++|+++++....+++.+..+++++..|..++++.+..++.+++. ...
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999999999999888888899999999999999999999999999887 444
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 94 CQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 94 ~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+..+||+||||++.+|++.|++.+
T Consensus 82 ~~~~~i~dg~~~~~~~~~~l~~~l 105 (220)
T 1aky_A 82 CKNGFILDGFPRTIPQAEKLDQML 105 (220)
T ss_dssp GGSCEEEESCCCSHHHHHHHHHHH
T ss_pred cCCCeEEeCCCCCHHHHHHHHHHH
Confidence 567999999999999998887654
No 9
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.89 E-value=1.4e-22 Score=138.22 Aligned_cols=100 Identities=52% Similarity=0.903 Sum_probs=94.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|++++|+.+++.++++++....+++.+..+.+++..|..++++++..++.+++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~ 80 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG 80 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999988777789
Q ss_pred EEEeCCCCCHHHHHHHHHHh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l 117 (119)
||+||||++..|++.+.+.+
T Consensus 81 ~ildg~p~~~~~~~~l~~~~ 100 (216)
T 3fb4_A 81 FLLDGFPRTVAQADALDSLL 100 (216)
T ss_dssp EEEESCCCSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999998765
No 10
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.87 E-value=3e-21 Score=130.49 Aligned_cols=106 Identities=40% Similarity=0.779 Sum_probs=93.7
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK 91 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~ 91 (119)
..+..+..|+|+|+|||||||+|+.|++++++.++++|+++++.....+..+..+.+++..|..++++....++.+++..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 94 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN 94 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Confidence 45666789999999999999999999999999999999999998877888899999999999999999988888888876
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
..+..+||+||||++..|++.+++.+
T Consensus 95 ~~~~~~vIldg~~~~~~~~~~l~~~l 120 (201)
T 2cdn_A 95 PDAANGFILDGYPRSVEQAKALHEML 120 (201)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred ccCCCeEEEECCCCCHHHHHHHHHHH
Confidence 55567899999999999998887765
No 11
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.87 E-value=5.6e-22 Score=135.45 Aligned_cols=98 Identities=57% Similarity=0.967 Sum_probs=88.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
++|+|+|+|||||||+|+.|++++|+.++++++++++.+..++..+..+++++..|..++++++..++..++....+..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 36899999999999999999999999999999999998888888888888888889999999999999999987655679
Q ss_pred EEEeCCCCCHHHHHHHHH
Q psy9244 98 FLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~ 115 (119)
||+||||++..|++.|.+
T Consensus 81 ~i~dg~~~~~~~~~~l~~ 98 (214)
T 1e4v_A 81 FLLDGFPRTIPQADAMKE 98 (214)
T ss_dssp EEEESCCCSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHh
Confidence 999999999999988764
No 12
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.86 E-value=4.6e-21 Score=131.97 Aligned_cols=99 Identities=40% Similarity=0.834 Sum_probs=89.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG 97 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g 97 (119)
+.|+|+|+|||||||+|+.|++++|+.++++|+++++....++..+..+++++..|..++++.+..++..++...+ +.+
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence 3689999999999999999999999999999999999887788899999999999999999999999988887644 579
Q ss_pred EEEeCCCCCHHHHHHHHHHh
Q psy9244 98 FLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 98 ~vldg~P~~~~q~~~l~~~l 117 (119)
||+||||++.+|++.+.+.+
T Consensus 80 vIlDg~~~~~~~~~~l~~~~ 99 (223)
T 2xb4_A 80 WLLDGFPRNTVQAQKLFEAL 99 (223)
T ss_dssp EEEESCCCSHHHHHHHHHHH
T ss_pred EEEeCCcCCHHHHHHHHHHH
Confidence 99999999999999887653
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.85 E-value=6.2e-21 Score=130.79 Aligned_cols=100 Identities=45% Similarity=0.831 Sum_probs=87.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC- 94 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~- 94 (119)
.+..|+|+|+|||||||+|+.|++++++.++++|++++.....++..+..+.+++..|..++++.+..++.+++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 3568999999999999999999999999999999999998777888999999999999999999888888888765332
Q ss_pred CCcEEEeCCCCCHHHHHHHHH
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~ 115 (119)
..+||+||||++.+|++.+.+
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~ 104 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALET 104 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHT
T ss_pred CCcEEEECCCCCHHHHHHHHH
Confidence 468999999999999887764
No 14
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.84 E-value=2.8e-20 Score=127.98 Aligned_cols=99 Identities=39% Similarity=0.694 Sum_probs=87.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
++..|+|+|+|||||||+|+.|++++++.++++|++++.....++..+..+.+++..|..++++....++.+++.+. ..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-TQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-cC
Confidence 35689999999999999999999999999999999999988788888999999999999999998888888888753 35
Q ss_pred CcEEEeCCCCCHHHHHHHHH
Q psy9244 96 NGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~ 115 (119)
.+||+||||++..|++.+++
T Consensus 85 ~~~vid~~~~~~~~~~~l~~ 104 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDR 104 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHT
T ss_pred CCEEEeCCCCCHHHHHHHHH
Confidence 68999999999999877754
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.82 E-value=1.3e-19 Score=121.32 Aligned_cols=102 Identities=46% Similarity=0.723 Sum_probs=87.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-EC 94 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~ 94 (119)
++..|+|+|+|||||||+|+.|++++++.+++.+++++.....++..+..+.+++..|..++.+.+..++...+... ..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 87 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT 87 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence 45689999999999999999999999999999999999987777888999999888899899888877777766542 23
Q ss_pred CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 95 QNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 95 ~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+.+||+||||++.++++.+.+.+
T Consensus 88 ~~~vi~d~~~~~~~~~~~~~~~~ 110 (196)
T 2c95_A 88 SKGFLIDGYPREVQQGEEFERRI 110 (196)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHT
T ss_pred CCcEEEeCCCCCHHHHHHHHHhc
Confidence 57999999999999988776643
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.82 E-value=9.7e-20 Score=123.02 Aligned_cols=106 Identities=36% Similarity=0.626 Sum_probs=86.6
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh-cCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDELVVDLISNNLD 90 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~ 90 (119)
-.+..+..|+|+|+|||||||+|+.|++++|+.+++.|++++.... .++..++.++.++..|...++++...++.+.+.
T Consensus 10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~ 89 (203)
T 1ukz_A 10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS 89 (203)
T ss_dssp SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999999999999988754 566778888888888988888877777766654
Q ss_pred CC-CCC-CcEEEeCCCCCHHHHHHHHHHh
Q psy9244 91 KP-ECQ-NGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 91 ~~-~~~-~g~vldg~P~~~~q~~~l~~~l 117 (119)
.. ..+ .+||+||||++.+++..|++.+
T Consensus 90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~ 118 (203)
T 1ukz_A 90 DNVKANKHKFLIDGFPRKMDQAISFERDI 118 (203)
T ss_dssp HHHHTTCCEEEEETCCCSHHHHHHHHHHT
T ss_pred hhhccCCCeEEEeCCCCCHHHHHHHHHhc
Confidence 32 112 5899999999999998887654
No 17
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.82 E-value=3.4e-19 Score=118.76 Aligned_cols=101 Identities=36% Similarity=0.571 Sum_probs=89.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~ 96 (119)
+..|+|+|+|||||||+|+.|++++++.+++.|++++.....++..+..+.+++..|...+++....++...+... ...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence 4689999999999999999999999999999999999888777888999999999999899888888888888765 456
Q ss_pred cEEEeCCCCCHHHHHHHHHHhh
Q psy9244 97 GFLLDGFPRTVPQAEKVYSLMM 118 (119)
Q Consensus 97 g~vldg~P~~~~q~~~l~~~l~ 118 (119)
++|+||||++.++++.+.+.+.
T Consensus 85 ~vi~d~~~~~~~~~~~~~~~~~ 106 (194)
T 1qf9_A 85 NFLVDGFPRNEENNNSWEENMK 106 (194)
T ss_dssp CEEEETCCCSHHHHHHHHHHHT
T ss_pred CEEEeCcCCCHHHHHHHHHHHh
Confidence 8999999999999988876543
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.81 E-value=3.9e-19 Score=118.38 Aligned_cols=97 Identities=45% Similarity=0.818 Sum_probs=85.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
.+..|+|+|+|||||||+|+.|++++|+.+++.|++++.....+++.+..+.+++..|...+++.+..++.+.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~---- 78 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE---- 78 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence 4568999999999999999999999999999999999988777788889999999999999999888888887753
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh
Q psy9244 96 NGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~~l 117 (119)
+||+||||++..|.+.+++.+
T Consensus 79 -~~i~dg~~~~~~~~~~l~~~l 99 (186)
T 3cm0_A 79 -RVIFDGFPRTLAQAEALDRLL 99 (186)
T ss_dssp -EEEEESCCCSHHHHHHHHHHH
T ss_pred -CEEEeCCCCCHHHHHHHHHHH
Confidence 499999999999887776544
No 19
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=118.93 Aligned_cols=100 Identities=38% Similarity=0.648 Sum_probs=86.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-ECQ 95 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~~ 95 (119)
+..|+|+|+|||||||+|+.|++++++.+++.|++++.....+++.+..+.+++..|..++++.+..++.+.+... ..+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 91 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDT 91 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccC
Confidence 4689999999999999999999999999999999999988777888889999998899899988888777766543 235
Q ss_pred CcEEEeCCCCCHHHHHHHHHH
Q psy9244 96 NGFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~~ 116 (119)
.+||+||||++.+|++.+.+.
T Consensus 92 ~~vi~dg~~~~~~~~~~l~~~ 112 (199)
T 2bwj_A 92 RGFLIDGYPREVKQGEEFGRR 112 (199)
T ss_dssp SCEEEETCCSSHHHHHHHHHH
T ss_pred ccEEEeCCCCCHHHHHHHHHh
Confidence 789999999999998877653
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.78 E-value=3.1e-18 Score=114.26 Aligned_cols=101 Identities=35% Similarity=0.626 Sum_probs=81.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc-CCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC----
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSDELVVDLISNNLDK---- 91 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~---- 91 (119)
+..|+|+|+|||||||+|+.|++++|+.+++.|++++..... .+..+..+.+++..|...++++...++...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 82 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA 82 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhcc
Confidence 467999999999999999999999999999999999887653 456688888888889888888776666555432
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
.....+||+||||++.++.+.+.+.+
T Consensus 83 ~~~~~~vi~dg~~~~~~~~~~~~~~~ 108 (196)
T 1tev_A 83 NAQKNKFLIDGFPRNQDNLQGWNKTM 108 (196)
T ss_dssp CTTCCEEEEESCCCSHHHHHHHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHh
Confidence 22356899999999999887766543
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.70 E-value=3.7e-16 Score=108.56 Aligned_cols=98 Identities=37% Similarity=0.666 Sum_probs=81.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
++.+|+|+|++||||||+++.|++++|+.+++.++++..........+..+..+++.+..+++..+.+.+...+... ..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~~ 104 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-RG 104 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Confidence 46789999999999999999999999999999999988766555667777888888888899988888887777543 34
Q ss_pred CcEEEeCCCCCHHHHHHHH
Q psy9244 96 NGFLLDGFPRTVPQAEKVY 114 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~ 114 (119)
.+||+||||++..+++.+.
T Consensus 105 ~~~il~g~~~~~~~~~~l~ 123 (246)
T 2bbw_A 105 QHWLLDGFPRTLGQAEALD 123 (246)
T ss_dssp SCEEEESCCCSHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHH
Confidence 6899999999987776654
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.61 E-value=6.4e-15 Score=96.13 Aligned_cols=94 Identities=24% Similarity=0.328 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC----CcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG----SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE 93 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~ 93 (119)
+.|+|+|+|||||||+|+.| +++|+.++++++++++..... .........+... .+++.+..++.+.+.. .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~ 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-S 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS-C
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh-c
Confidence 47899999999999999999 999999999999999876542 2233333333322 2234455566666643 3
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 94 CQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 94 ~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
....||+||+ ++..+.+.+.+.+
T Consensus 77 ~~~~vi~dg~-~~~~~~~~l~~~~ 99 (179)
T 3lw7_A 77 NHDLVVFDGV-RSLAEVEEFKRLL 99 (179)
T ss_dssp CCSCEEEECC-CCHHHHHHHHHHH
T ss_pred CCCeEEEeCC-CCHHHHHHHHHHh
Confidence 4678999999 9999999988765
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.55 E-value=1.6e-14 Score=95.13 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=63.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh-HcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK-KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~-~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
+..|+|+|+|||||||+|+.|++ .+++.+++.+.+...... ... +. ...+...+.....+.+..++...+.....+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 78 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGDSV 78 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence 35789999999999999999999 689999998665443332 111 00 000001111122344556666666433446
Q ss_pred CcEEEeCCCCCHHHHHHHHHHh
Q psy9244 96 NGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 96 ~g~vldg~P~~~~q~~~l~~~l 117 (119)
.++|+||++.+..+.+.+.+.+
T Consensus 79 ~~vi~d~~~~~~~~~~~l~~~~ 100 (181)
T 1ly1_A 79 KGVIISDTNLNPERRLAWETFA 100 (181)
T ss_dssp CEEEECSCCCSHHHHHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999988877776543
No 24
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.40 E-value=1e-12 Score=93.31 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN 96 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~ 96 (119)
..|+|+|+|||||||+|+.|++++ ++.+++.|++. ......+. +. ...+...+.....+.+.+.+...+.....+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r-~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 79 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYR-QSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGDSVK 79 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHH-HHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHH-HHhccCCc-cc-ccccchhhhhHHHHHHHHHHHHHHhhccCCC
Confidence 578999999999999999999985 99999998554 43332111 00 0011111112223444455566553323457
Q ss_pred cEEEeCCCCCHHHHHHHHHH
Q psy9244 97 GFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 97 g~vldg~P~~~~q~~~l~~~ 116 (119)
++|+||++.+..+.+.+.+.
T Consensus 80 ~vi~d~~~~~~~~~~~l~~~ 99 (301)
T 1ltq_A 80 GVIISDTNLNPERRLAWETF 99 (301)
T ss_dssp EEEECSCCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 99999999998877777654
No 25
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.30 E-value=1.3e-12 Score=86.67 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=36.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~ 57 (119)
+..|+|+|+|||||||+|+.|+++++ +.+++.++++++...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~ 48 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 48 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence 45799999999999999999999998 899999999887654
No 26
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.29 E-value=1.6e-11 Score=81.58 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=35.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.+..|+|+|+|||||||+++.|++++++.+++.|++....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~ 43 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVM 43 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHH
Confidence 4568999999999999999999999999999998775544
No 27
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=6e-12 Score=84.70 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=57.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ 95 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~ 95 (119)
++.+|+|+|+|||||||+++.|++.+|+.+++.|+++..... ......... .|.....+....++.... ..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~---~~~~~~~~~e~~~l~~l~----~~ 94 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTE---RGEAGFRELERNMLHEVA----EF 94 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHHHT----TC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHh---cChHHHHHHHHHHHHHHh----hc
Confidence 356899999999999999999999999999999998876542 222222221 121111222233333322 23
Q ss_pred CcEEEe---CCCCCHHHHHHHH
Q psy9244 96 NGFLLD---GFPRTVPQAEKVY 114 (119)
Q Consensus 96 ~g~vld---g~P~~~~q~~~l~ 114 (119)
..+||+ |.+...+..+.+.
T Consensus 95 ~~~vi~~ggg~~~~~~~~~~l~ 116 (199)
T 3vaa_A 95 ENVVISTGGGAPCFYDNMEFMN 116 (199)
T ss_dssp SSEEEECCTTGGGSTTHHHHHH
T ss_pred CCcEEECCCcEEccHHHHHHHH
Confidence 578888 6676666655554
No 28
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.28 E-value=1.6e-11 Score=82.55 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHH---HHHHHHHhhcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL---VVDLISNNLDK 91 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~ll~~~l~~ 91 (119)
..+..|+|+|++||||||+|+.|++.+|+.+++.|++...... .....|..+.+.. ..+.+...+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~-- 83 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL-- 83 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH--
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH--
Confidence 3456899999999999999999999999999999887532111 0111122222221 112233333
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHH
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYS 115 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~ 115 (119)
..+.++|+|+......+.+.+.+
T Consensus 84 -~~~~~vivd~~~~~~~~~~~l~~ 106 (202)
T 3t61_A 84 -ASREPVVVSCSALKRSYRDKLRE 106 (202)
T ss_dssp -TSSSCCEEECCCCSHHHHHHHHH
T ss_pred -hcCCCEEEECCCCCHHHHHHHHH
Confidence 33568999988777777776665
No 29
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.27 E-value=3.4e-12 Score=84.55 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~ 56 (119)
..|+|+|+|||||||+|+.|+++++ +.+++.++++.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4789999999999999999999987 88999889887665
No 30
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.26 E-value=1.9e-11 Score=81.12 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=41.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (119)
.|+|+|+|||||||+|+.|++++ |+.++++++ ...+..+..+.+++..|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~ 58 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDER 58 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHH
Confidence 68999999999999999999988 899998753 1234456667776766654443
No 31
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.23 E-value=3.1e-12 Score=86.27 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHH-h------
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISN-N------ 88 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~-~------ 88 (119)
++..|+|+|+|||||||+|+.|+++++..+++++ ++++. ..++..+..+.+++..+..++......+... +
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE 86 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999988887773 33322 2235567777777766666665543332221 1
Q ss_pred hcC-CCCCCcEEEeCCCCC
Q psy9244 89 LDK-PECQNGFLLDGFPRT 106 (119)
Q Consensus 89 l~~-~~~~~g~vldg~P~~ 106 (119)
+.. ......+|+|+|+.+
T Consensus 87 i~~~l~~~~~vi~D~~~~~ 105 (212)
T 2wwf_A 87 IKSLLLKGIWVVCDRYAYS 105 (212)
T ss_dssp HHHHHHHTCEEEEECCHHH
T ss_pred HHHHHhCCCEEEEecchhh
Confidence 111 012357899999865
No 32
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.22 E-value=8.3e-11 Score=80.03 Aligned_cols=40 Identities=28% Similarity=0.382 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+.+|.|+|++||||||+++.|++.+|+.+++.|++.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 3579999999999999999999999999999999998654
No 33
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.21 E-value=6.9e-11 Score=82.40 Aligned_cols=96 Identities=21% Similarity=0.313 Sum_probs=55.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHHHhc----CCcHHHHHHhhhhcCcccCHHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAEVSS----GSNLGKKLKETMDAGKLVSDELVVDLISNN 88 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~ 88 (119)
..+..|+|+|+|||||||+|+.|++.++ +.+++.|.+ +..... ....+..+.++... .....+..++...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~ 105 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL 105 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence 4467899999999999999999999986 556676654 222110 00000001111110 0012223333333
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 89 LDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 89 l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+.. +.+|||||++++..+...+.+.+
T Consensus 106 ~~~---g~~vVid~~~~~~~~~~~~~~~l 131 (253)
T 2p5t_B 106 SSL---GYNLLIEGTLRTVDVPKKTAQLL 131 (253)
T ss_dssp HHT---TCCEEEECCTTSSHHHHHHHHHH
T ss_pred Hhc---CCCEEEeCCCCCHHHHHHHHHHH
Confidence 322 34799999999888877666654
No 34
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.17 E-value=1e-10 Score=81.93 Aligned_cols=85 Identities=16% Similarity=0.091 Sum_probs=53.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH---cCcccc--chhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK---YCVCHL--STGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK 91 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~---~~~~~i--s~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~ 91 (119)
+..|+|+|+|||||||+|+.|++. +|+.++ +.|.+..... .-.. .+...........+...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~~~~----------~~e~~~~~~~~~~i~~~l~~ 72 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-VWKE----------KYEEFIKKSTYRLIDSALKN 72 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-SCCG----------GGHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-hhhH----------HHHHHHHHHHHHHHHHHhhC
Confidence 568999999999999999999997 677776 7766543221 1010 11111122223344444432
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHH
Q psy9244 92 PECQNGFLLDGFPRTVPQAEKVYSL 116 (119)
Q Consensus 92 ~~~~~g~vldg~P~~~~q~~~l~~~ 116 (119)
..+|+|+.+....+.+.+.+.
T Consensus 73 ----~~vIiD~~~~~~~~~~~l~~~ 93 (260)
T 3a4m_A 73 ----YWVIVDDTNYYNSMRRDLINI 93 (260)
T ss_dssp ----SEEEECSCCCSHHHHHHHHHH
T ss_pred ----CEEEEeCCcccHHHHHHHHHH
Confidence 579999987777666666543
No 35
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.16 E-value=4.9e-11 Score=88.75 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP 92 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~ 92 (119)
.+..+..|+|+|+|||||||+|+.|++++++.+++.|++- . ...+...+...+..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~- 308 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ- 308 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT-
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc-
Confidence 3445678999999999999999999999999999998861 0 01122233333332
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 93 ECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 93 ~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+..+|+|+...+..+.+.+.+.+
T Consensus 309 --g~~vIiD~~~~~~~~r~~~~~~~ 331 (416)
T 3zvl_A 309 --GKRVVIDNTNPDVPSRARYIQCA 331 (416)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHH
Confidence 34688888877777776665544
No 36
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.16 E-value=3e-11 Score=85.99 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=56.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcCCcHHHHHHhhhhcC----cccCHHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG----KLVSDELVVDLISNN 88 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~ll~~~ 88 (119)
..+..|+|+|+|||||||+|+.|++++ ++.++|.|.+... ... ....+..+.... ......+...++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~-~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ-HPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT-STT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh-chh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 346789999999999999999999998 7888997665322 110 001111111100 011122233344444
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 89 LDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 89 l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
+.. +..+|+|+...+..+...+.+.+
T Consensus 107 l~~---g~~vIld~~~~~~~~~~~~~~~~ 132 (287)
T 1gvn_B 107 SDQ---GYNLVIEGTGRTTDVPIQTATML 132 (287)
T ss_dssp HHH---TCCEEECCCCCCSHHHHHHHHHH
T ss_pred Hhc---CCeEEEECCCCCHHHHHHHHHHH
Confidence 432 45799999988877665555444
No 37
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.16 E-value=8.8e-11 Score=76.47 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
++|+|+|+|||||||+|+.|++++++.+++.|++.+...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~ 39 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE 39 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc
Confidence 369999999999999999999999999999999987764
No 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.15 E-value=9.5e-11 Score=76.57 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
..|+|+|+|||||||+|+.|++++|+.+++.|++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 47999999999999999999999999999999988775
No 39
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.15 E-value=6.8e-11 Score=79.18 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=53.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHH-----------H
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVV-----------D 83 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 83 (119)
++..|+|+|++||||||+++.|++++ |+.++++++. ...+..++.+.+++..+..+...... +
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999998 5777765321 11334566677777655444433221 1
Q ss_pred HHHHhhcCCCCCCcEEEeCCCCCH
Q psy9244 84 LISNNLDKPECQNGFLLDGFPRTV 107 (119)
Q Consensus 84 ll~~~l~~~~~~~g~vldg~P~~~ 107 (119)
.+...+. ....+|+|+||.+.
T Consensus 78 ~i~~~l~---~~~~vi~Dr~~~s~ 98 (204)
T 2v54_A 78 FIQEQLE---QGITLIVDRYAFSG 98 (204)
T ss_dssp HHHHHHH---TTCEEEEESCHHHH
T ss_pred HHHHHHH---CCCEEEEECchhhH
Confidence 1122222 23468889998753
No 40
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.13 E-value=6.1e-11 Score=78.88 Aligned_cols=40 Identities=30% Similarity=0.634 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-cCccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-YCVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-~~~~~is~~~l~~~~ 55 (119)
++.+|+|+|+|||||||+++.|++. +|+.++++|+++++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~ 49 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN 49 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence 4568999999999999999999999 799999999998874
No 41
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.12 E-value=6.4e-11 Score=77.36 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+...+|+|+|+|||||||+|+.|++++|+.+++.|+++++..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~ 46 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV 46 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence 456789999999999999999999999999999999988764
No 42
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.12 E-value=5.2e-11 Score=78.79 Aligned_cols=39 Identities=36% Similarity=0.435 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
++|+|+|+|||||||+|+.|++++|+.+++.|+++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 469999999999999999999999999999999988764
No 43
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.12 E-value=1.4e-10 Score=77.89 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=39.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL 66 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~ 66 (119)
.+|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i 49 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEV 49 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHH
Confidence 4799999999999999999999 99999999999887665443333333
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.09 E-value=8e-10 Score=74.30 Aligned_cols=40 Identities=33% Similarity=0.275 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~ 58 (119)
.+|.|+|++||||||+++.|++ +|+.+++.|++.++....
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~ 42 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAK 42 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccC
Confidence 5789999999999999999998 999999999998875543
No 45
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.09 E-value=1.1e-10 Score=77.27 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=36.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+.+|+|+|+|||||||+|+.|++++|+.+++.|+++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~ 44 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT 44 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 5689999999999999999999999999999999887754
No 46
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.08 E-value=5.8e-10 Score=73.39 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
++..|+|+|+|||||||+|+.|++++++.++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4578999999999999999999999998887
No 47
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.07 E-value=3.5e-10 Score=80.14 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=42.7
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLG 63 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~ 63 (119)
..+..+..|+|+|++||||||+|+.|+ ++|+.+++.|++.++....+....
T Consensus 70 ~~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~ 120 (281)
T 2f6r_A 70 ELPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAY 120 (281)
T ss_dssp TSCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTH
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHH
Confidence 456677899999999999999999999 689999999999887765554433
No 48
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.07 E-value=3.8e-10 Score=77.81 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=59.4
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc--cccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHH-HHHHhh
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV--CHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD-LISNNL 89 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~--~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-ll~~~l 89 (119)
...++..|+|.|++||||||+++.|++.++. .++.. .....++.++.+++++..+....+....- ....+.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~ 95 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR 95 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999863 33322 22345677888998888877544443322 222333
Q ss_pred cCC--------CCCCcEEEe----------CCCCCHHHH
Q psy9244 90 DKP--------ECQNGFLLD----------GFPRTVPQA 110 (119)
Q Consensus 90 ~~~--------~~~~g~vld----------g~P~~~~q~ 110 (119)
... ..+..+|+| |+|++..+.
T Consensus 96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~ 134 (229)
T 4eaq_A 96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVE 134 (229)
T ss_dssp HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHH
T ss_pred HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHH
Confidence 221 124578889 999887654
No 49
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.06 E-value=1.9e-10 Score=75.86 Aligned_cols=40 Identities=35% Similarity=0.444 Sum_probs=36.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
.+..|+|+|+|||||||+++.|++++++.+++.++++++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 4567999999999999999999999999999999988765
No 50
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.06 E-value=6.2e-10 Score=73.97 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=39.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccC
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 77 (119)
.|+|+|++||||||+|+.|++.+ |+.++...+ ...+..+..+++.+..+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~ 57 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTP 57 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCH
Confidence 58999999999999999999998 988886543 234556777777766555444
No 51
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.05 E-value=1.6e-10 Score=75.97 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+|+|+|+|||||||+|+.|++++++.+++.|++++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~ 43 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF 43 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc
Confidence 369999999999999999999999999999999887653
No 52
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.04 E-value=7.8e-10 Score=77.10 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=37.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+.+|.|+|++||||||+++.|++++|+.+++.+.+.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 345789999999999999999999999999999999986643
No 53
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.02 E-value=3.2e-10 Score=76.44 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=39.6
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~ 58 (119)
.+....|.|+|++||||||+|+.|++.+|+.++++|++.++....
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 345578999999999999999999999999999999999887653
No 54
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.01 E-value=2.1e-10 Score=79.79 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCcc----------ccchhHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC----------HLSTGDMLRA 54 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~----------~is~~~l~~~ 54 (119)
..+.+|.|+|++||||||+|+.|++.+|+. +++.|++.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~ 69 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV 69 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence 345789999999999999999999999987 6899988763
No 55
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.00 E-value=4.1e-10 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+..|+|+|++||||||+++.|+..+++.+++.+++++...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~ 43 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT 43 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh
Confidence 4579999999999999999999999999999998877643
No 56
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.00 E-value=1.6e-09 Score=73.44 Aligned_cols=50 Identities=26% Similarity=0.261 Sum_probs=40.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK 67 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~ 67 (119)
+..|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~ 53 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIA 53 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHH
Confidence 56899999999999999999998 999999999998886654443434443
No 57
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.99 E-value=5.3e-10 Score=75.26 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (119)
++..|+|+|+|||||||+|+.|+++++..+++++.+ ++. ..++..+..+..++..+..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~ 69 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDH 69 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence 457899999999999999999999987666665321 111 11244566666666655555544
No 58
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.99 E-value=2e-09 Score=75.34 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=37.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+|+|+|++||||||+++.|++.+|+.+++.+++++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~ 87 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM 87 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence 5689999999999999999999999999999999888765
No 59
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.98 E-value=5.7e-09 Score=70.87 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=58.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHHHHHHh-cC----CcH----------HHHHHhhhhcCcccCH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDMLRAEVS-SG----SNL----------GKKLKETMDAGKLVSD 78 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~~~~~~-~~----~~~----------~~~~~~~~~~g~~~~~ 78 (119)
...|+|+|.|||||+|+|+.+.+.+| +.++++++.+++... .. ... +..+......-.....
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~ 90 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 90 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 45889999999999999999988784 778999999986432 11 010 1111100000000001
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 79 ~~~~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
..+.+++.+ .. ....|||||. |...++++|++.+
T Consensus 91 ~~~~~~~~~---~~-~~~~vII~dv-R~~~Ev~~fr~~~ 124 (202)
T 3ch4_B 91 GFFCRKIVE---GI-SQPIWLVSDT-RRVSDIQWFREAY 124 (202)
T ss_dssp TTTHHHHSB---TC-CCSEEEECCC-CSHHHHHHHHHHH
T ss_pred hHHHHHHHH---hc-CCCcEEEeCC-CCHHHHHHHHHhC
Confidence 111222222 22 2347999999 9999999999864
No 60
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.98 E-value=3e-10 Score=73.91 Aligned_cols=37 Identities=24% Similarity=0.119 Sum_probs=33.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~ 54 (119)
..|+|+|+|||||||+|+.|++++++.+++.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 4789999999999999999999999999998876544
No 61
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.97 E-value=6.6e-10 Score=74.18 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=37.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
+.++..|.|+|++||||||+|+.|++. |+.+++.|++.++..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 455678999999999999999999998 999999999987765
No 62
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.95 E-value=3.6e-10 Score=75.81 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..|+|+|+|||||||+|+.|+++++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999998763
No 63
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.94 E-value=1.4e-09 Score=83.16 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=57.4
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCcc-----ccchhHHHHHHHhcCCcHHHHHHhhhhc-Cc---ccCHHHHHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVC-----HLSTGDMLRAEVSSGSNLGKKLKETMDA-GK---LVSDELVVD 83 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~-----~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~ 83 (119)
+...+..|+++|.|||||||+|+.|++.+++. +++.|++.+........ .+++.. +. .....+...
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~ 105 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALA 105 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHH
Confidence 34456789999999999999999999987543 46778876665432110 011111 10 011122212
Q ss_pred HHH---HhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 84 LIS---NNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 84 ll~---~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
.+. ..+.. ..+..+|+|+...+..+-+.+.+.+
T Consensus 106 ~l~~~~~~L~~-~~g~~VIvDat~~~~~~R~~~~~~a 141 (520)
T 2axn_A 106 ALRDVKSYLAK-EGGQIAVFDATNTTRERRHMILHFA 141 (520)
T ss_dssp HHHHHHHHHHH-SCCCEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCceEEecCCCCCHHHHHHHHHHH
Confidence 221 22211 2346899999988888777665544
No 64
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.93 E-value=5.2e-09 Score=71.51 Aligned_cols=56 Identities=23% Similarity=0.154 Sum_probs=47.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~ 70 (119)
.+....|.|+|.+||||||+++.|++ +|+.+++.|.+.++....+......+.+.+
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~f 61 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTF 61 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHh
Confidence 45567899999999999999999988 999999999999998877766555555444
No 65
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.89 E-value=1.8e-09 Score=74.89 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=37.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..+..|.|+|++||||||+|+.|++++|+.+++.+.+.+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 456789999999999999999999999999999999987754
No 66
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.88 E-value=2.3e-09 Score=72.59 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
..|.|.|++||||||+++.||+++|+.+++ +++++...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a 44 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA 44 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH
Confidence 579999999999999999999999999999 88887644
No 67
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.87 E-value=2.5e-09 Score=71.59 Aligned_cols=38 Identities=34% Similarity=0.356 Sum_probs=35.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.|.|+|++||||||+|+.|++.+|+.+++.|++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 79999999999999999999999999999999987754
No 68
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.87 E-value=2.5e-09 Score=70.08 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRA 54 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~ 54 (119)
+..|+|+|+|||||||+++.|+++++..++ +.|++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 357999999999999999999999876544 57776553
No 69
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.85 E-value=3.3e-09 Score=72.95 Aligned_cols=44 Identities=34% Similarity=0.496 Sum_probs=38.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~ 56 (119)
.+..+.+|.|+|++||||||+++.|++++|+.+++.|++.+...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~ 55 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT 55 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcce
Confidence 34566789999999999999999999999999999999998743
No 70
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.84 E-value=2.8e-09 Score=69.86 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
.+..|+|+|++||||||+++.|++.+|..+++.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 3568999999999999999999999999999988874
No 71
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.83 E-value=3.5e-09 Score=71.70 Aligned_cols=39 Identities=36% Similarity=0.464 Sum_probs=36.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~ 55 (119)
+..|+|+|++||||||+++.|++.+|+.+++.|++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 457999999999999999999999999999999998864
No 72
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.82 E-value=5.6e-09 Score=71.86 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=35.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
...|.|.|++||||||+++.||+++|+.+++ +++++....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 4689999999999999999999999999999 777777654
No 73
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.77 E-value=5.9e-09 Score=69.98 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
.+..|+|+|++||||||+++.|+..+|..+++.+++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~ 64 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH 64 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc
Confidence 4568999999999999999999999999999988763
No 74
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.76 E-value=3.7e-09 Score=73.74 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML 52 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~ 52 (119)
..|+|+|++||||||+|+.||+++++.+++.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 36899999999999999999999999999998864
No 75
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.68 E-value=1.5e-08 Score=68.16 Aligned_cols=41 Identities=24% Similarity=0.224 Sum_probs=35.6
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRA 54 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~ 54 (119)
...+..|.|+|++||||||+++.|++.+ ++.+++.|+++..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 3446789999999999999999999988 8999999987643
No 76
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.66 E-value=7.6e-09 Score=71.43 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH---HHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD---MLRAEVSSGSNLGKKLKETMDAGKLVSDE 79 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~---l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (119)
++..|+|.|++||||||+++.|++.++..+++.+. +.++ ..+++.|+.+++++..+...+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~ 88 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE--PGGTRLGETLREILLNQPMDLET 88 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES--SSSSHHHHHHHHHHHHSCCCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC--CCCChHHHHHHHHHHcCCCCHHH
Confidence 56789999999999999999999988544333221 1121 14567888899888877544433
No 77
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.63 E-value=1.6e-08 Score=73.10 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..|+|+||+||||||+|..||++++..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35799999999999999999999999999999875
No 78
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.61 E-value=1.3e-08 Score=73.95 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..|+|+||+||||||++..||++++..+||.|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35799999999999999999999999999998876
No 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.59 E-value=3.9e-08 Score=64.99 Aligned_cols=38 Identities=34% Similarity=0.430 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~ 53 (119)
.+..|+|+|++||||||+++.|+..++ ..+++.+++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 456899999999999999999998764 44777777654
No 80
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.59 E-value=3.4e-08 Score=65.70 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.|+|.|++||||||+++.|+++++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 68999999999999999999999986654
No 81
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.59 E-value=4.9e-08 Score=65.42 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc---Ccc--ccchhHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVC--HLSTGDM 51 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~--~is~~~l 51 (119)
..+..|+|+|++||||||+++.|+..+ |.. +++.+++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999987 555 7776655
No 82
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.55 E-value=6.7e-08 Score=72.77 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=53.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHhcCCcHHHHHHhhhhc-Cc---ccCHHHHHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GK---LVSDELVVD 83 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~ 83 (119)
+...+..|+++|.|||||||+++.|++.++ ...++.+++.......... .+++.. |. ..-..++..
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~-----~~ifd~~g~~~~r~re~~~~~ 109 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKS-----FEFFLPDNEEGLKIRKQCALA 109 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCC-----GGGGCTTCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCc-----ccccCCCCHHHHHHHHHHHHH
Confidence 345567899999999999999999999864 4455666655543321100 011111 11 000111111
Q ss_pred HH---HHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244 84 LI---SNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117 (119)
Q Consensus 84 ll---~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l 117 (119)
.+ ...+.. ..+.++|+|.--.+.++.+.+.+.+
T Consensus 110 ~l~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~ 145 (469)
T 1bif_A 110 ALNDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 22 333322 2345799999877776666654443
No 83
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.54 E-value=2.5e-08 Score=70.96 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~ 53 (119)
++..|.|+|++||||||+|+.|++.++ +.+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 456899999999999999999999887 78899988764
No 84
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.53 E-value=7.4e-08 Score=63.66 Aligned_cols=38 Identities=34% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDM 51 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l 51 (119)
..++..|+|+|++||||||+++.|++.++ +.+++.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 34567899999999999999999998864 345665544
No 85
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.52 E-value=6.3e-08 Score=63.63 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc---Cccccch
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLST 48 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~ 48 (119)
.++..|+|+|++||||||+++.|++.+ |+.++.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 346789999999999999999999987 8666644
No 86
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.52 E-value=7e-08 Score=65.16 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDM 51 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l 51 (119)
..+..|+|+|++||||||+++.|++.++ +.+++.+.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999999876 777775544
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.50 E-value=1.4e-07 Score=63.38 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..+..|+|+|+|||||||+++.|++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3456799999999999999999999873
No 88
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.48 E-value=9.9e-08 Score=67.76 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=31.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLR 53 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~ 53 (119)
.+.+..++|.||||+|||++|+.+|+.++..+ ++.+++..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 34456788999999999999999999987655 45555543
No 89
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.45 E-value=6.9e-08 Score=70.24 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
..|+|+||+||||||+|..|++.++..++|.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4789999999999999999999999999999876
No 90
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.44 E-value=1.2e-07 Score=68.34 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..|+|+||+||||||+|..||++++..++|.|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 45789999999999999999999999999988763
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.43 E-value=1.3e-07 Score=63.47 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~ 52 (119)
++..|.|+|++||||||+++.|+..++ +.+++.+..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 456899999999999999999999888 7777766543
No 92
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.42 E-value=1.3e-07 Score=68.21 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l 51 (119)
+..|+|+||+||||||+|..||++++..+||.|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 35789999999999999999999999999888865
No 93
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.42 E-value=7.3e-08 Score=68.13 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc---------CccccchhHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY---------CVCHLSTGDML 52 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~---------~~~~is~~~l~ 52 (119)
.....++|+|+||+|||++|+.+++.+ .+..++..++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 345579999999999999999999876 34555665553
No 94
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.41 E-value=2.3e-07 Score=61.34 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc-cccchhHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDMLR 53 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~-~~is~~~l~~ 53 (119)
..++|+|++||||||+++.|+..++. .+++.+++.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 46899999999999999999987754 6788776643
No 95
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=2e-07 Score=69.88 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML 52 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~ 52 (119)
+..|++.||||+|||++|+++|.+.++.++ +..+++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 467999999999999999999999987665 444443
No 96
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.37 E-value=4.5e-07 Score=63.07 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS 57 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~ 57 (119)
..|.|+|++||||||+|+.|++.+|+.+++.++-+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 4789999999999999999999999999999887766543
No 97
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.3e-07 Score=69.60 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~ 52 (119)
.+.-|++.||||+|||++|+++|.++++.++ +..+++
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 3467999999999999999999999987765 444443
No 98
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.3e-07 Score=69.35 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
+.-|++.||||+|||++|+++|..+++.++.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 45699999999999999999999998766543
No 99
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.36 E-value=1.8e-06 Score=66.35 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEV 56 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~ 56 (119)
+.+..|+|+|++||||||+|+.|+++++ +.+++.|.+ +..+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i-r~~l 415 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV-RTHL 415 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH-HHHT
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh-hhhh
Confidence 4567899999999999999999999876 367776554 4443
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.1e-07 Score=69.07 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
+..|++.||||+|||.+|+++|.+.++.++++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 45699999999999999999999998776543
No 101
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.36 E-value=2.5e-07 Score=63.10 Aligned_cols=53 Identities=28% Similarity=0.428 Sum_probs=39.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHHHHHHhcCCcHHHHHHhhhhcCc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~ 74 (119)
++..|+|.|++||||||+++.|++.++ +.++.+. + ..+++.|+.+++++..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~ 60 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPS 60 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCC
Confidence 356789999999999999999999874 3333321 1 245678888888887763
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=5.5e-07 Score=59.10 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~~l~~~~~ 56 (119)
+..++|+||+|+||||+++.++..+ | +.+++..+++....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 5679999999999999999998764 3 45678877776543
No 103
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.32 E-value=3.8e-07 Score=62.85 Aligned_cols=31 Identities=42% Similarity=0.523 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.+..++|+|+||+|||++|+.+++.++..++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3456999999999999999999998876554
No 104
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.32 E-value=3e-07 Score=61.95 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD 50 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~ 50 (119)
...+..|.|+|++||||||+++.|+..+. ..+++.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 45678999999999999999999998764 55666554
No 105
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.6e-07 Score=68.86 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
.+..|+|.||||+|||++|+++|.+.++.++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 456799999999999999999999998776543
No 106
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=5e-07 Score=62.50 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
+..++|+|+||+||||+|+.++..++..++
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 346999999999999999999998875443
No 107
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.9e-07 Score=67.65 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
+.-|++.||||+|||.+|+++|.++++.++++
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 45799999999999999999999998776543
No 108
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.28 E-value=5.3e-07 Score=60.03 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 109
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.27 E-value=5.9e-07 Score=63.85 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVS 57 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~ 57 (119)
.+..++|+||||+|||++|++++..++..++ +..++......
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 91 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence 3457999999999999999999999876554 55566655443
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.26 E-value=7.7e-07 Score=58.69 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..++|+||+||||||+++.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345689999999999999999999865
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.26 E-value=7e-07 Score=62.42 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.+..++|.|+||+|||++|+.+++.++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 35579999999999999999999998766543
No 112
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.26 E-value=6.3e-07 Score=63.08 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.+..++|+||||+|||++|+.+++.++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3567999999999999999999999875544
No 113
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.25 E-value=9.3e-07 Score=60.98 Aligned_cols=29 Identities=17% Similarity=0.011 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
.+..|.|+|+.||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45689999999999999999999988765
No 114
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.24 E-value=7e-07 Score=63.97 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR 53 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~ 53 (119)
+..++|.||||+|||++|+++|+..+..++ +..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 457999999999999999999999876554 5555543
No 115
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.23 E-value=8.7e-07 Score=59.76 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..+..|+|+||+||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3466899999999999999999998763
No 116
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.23 E-value=8.2e-07 Score=64.49 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
.+..++|+||||+|||++|+.+|+.++..++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 345799999999999999999999988666543
No 117
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.23 E-value=5.3e-07 Score=67.00 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
..|+|+||+||||||+|..|+++++..+||.|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468999999999999999999999988888876
No 118
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.22 E-value=9.9e-07 Score=63.04 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDM 51 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l 51 (119)
...+..|.|+|++||||||+++.|+..++ +.++++++.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 35567899999999999999999998765 566666654
No 119
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.22 E-value=2.7e-07 Score=63.98 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=38.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
++..|+|.|++||||||+++.|++.++...++...+.++. .+++.++.+++++.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep--~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP--GGTLLAEKLRALVK 79 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--CSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC--CCCHHHHHHHHHHh
Confidence 3568999999999999999999998755444422222222 35677777777764
No 120
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.21 E-value=1.3e-06 Score=58.13 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+||+||||||+++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35679999999999999999999765
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.20 E-value=1.9e-06 Score=57.32 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV 56 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~ 56 (119)
..++|+|+||+||||+++.++... .+.+++..+++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 679999999999999999999865 345577777766554
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.19 E-value=9.8e-07 Score=61.54 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.+..++|+|+||+|||++|+.+++..+..++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34579999999999999999999998866543
No 123
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.18 E-value=5e-07 Score=62.89 Aligned_cols=35 Identities=14% Similarity=0.035 Sum_probs=27.3
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-Ccccc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-CVCHL 46 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-~~~~i 46 (119)
..-.++..|+|.|++||||||+++.|++.+ ++.++
T Consensus 19 ~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 19 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp ----CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ccccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 333566789999999999999999999998 56555
No 124
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.18 E-value=8e-07 Score=67.80 Aligned_cols=37 Identities=5% Similarity=0.057 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCc-------cccchhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCV-------CHLSTGD 50 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~-------~~is~~~ 50 (119)
.+.+.+|+|+|.+||||||+|+.|+++++. .+++.|+
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 346689999999999999999999999985 5677665
No 125
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.18 E-value=1.1e-06 Score=66.07 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
+..|+++||||+||||+|+.||+.+++.++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 457999999999999999999999987776544
No 126
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.17 E-value=1.1e-06 Score=68.45 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc---Cccccchh-HHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTG-DMLRAE 55 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~-~l~~~~ 55 (119)
++..|+|+|.|||||||+|+.|++++ |+.++.++ +.++..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~ 94 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 94 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc
Confidence 56789999999999999999999998 87776654 455443
No 127
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.17 E-value=1.5e-06 Score=62.70 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDM 51 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l 51 (119)
...+..|.|+|++||||||+++.|+..++ +.+++.|+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45667899999999999999999988754 555777764
No 128
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.16 E-value=1.2e-06 Score=61.61 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
+..++|+|+||+|||++|+.+++.++..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456999999999999999999998875443
No 129
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.16 E-value=1.8e-06 Score=66.73 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDM 51 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l 51 (119)
....+..|+|+|.+||||||+|+.|+++++ +.+++.+.+
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 345667899999999999999999999875 345555443
No 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-Cccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCH 45 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~ 45 (119)
.+..|+|.||||+|||++|+++|+.+ +..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence 34679999999999999999999987 5444
No 131
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.15 E-value=1.2e-06 Score=59.94 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=38.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG 73 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g 73 (119)
++..|+|.|++||||||+++.|++.++... .++++. ..+++.|+.+++++...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~ 56 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDD 56 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhc
Confidence 467899999999999999999999987521 111211 23567788888877654
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.15 E-value=1.1e-05 Score=57.96 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..++|+|+||+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999876
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.15 E-value=1.5e-06 Score=61.19 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.++|+|||||||||+++.+|..++...+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 3999999999999999999998765443
No 134
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.15 E-value=6.3e-07 Score=62.19 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..++|+|+||+|||++|+.+++..+..++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 348999999999999999999988765543
No 135
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.14 E-value=1.5e-06 Score=63.33 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
...++|+|+||+|||++|+.+++.++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999998755543
No 136
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.14 E-value=1.2e-06 Score=57.67 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 1 ~~~~~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
|.+.+.++++.+.+....+|+|+|.+|+||||+...|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 1 MGSSHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---------------CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 445556666667778888999999999999999999875
No 137
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=1.3e-06 Score=63.51 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR 53 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~ 53 (119)
+..|+|+||||+|||++|+++++.++..++ +..+++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 356999999999999999999999886654 4455543
No 138
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.12 E-value=2.2e-06 Score=57.45 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDM 51 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l 51 (119)
+..+..|.|+|++||||||+++.|+..+ + +.+++.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3456789999999999999999999864 3 344455544
No 139
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.12 E-value=4e-07 Score=61.01 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
.|+|.|++||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998753
No 140
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.11 E-value=3.2e-06 Score=58.10 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcCc-cccchhHHHHHHHhcCCcHHHHHHhhhhc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDMLRAEVSSGSNLGKKLKETMDA 72 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~~-~~is~~~l~~~~~~~~~~~~~~~~~~~~~ 72 (119)
..++..|+|.|++||||||+++.|++.++. ..+++-.+.++ ..+++.++.+++++..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFK 75 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhC
Confidence 345678999999999999999999987654 22211100001 1245566666666553
No 141
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.11 E-value=6.9e-06 Score=55.58 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=37.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (119)
.-|+|-|+.||||||+++.|++.+ |..++... ...+++.++.+++++..+..++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~ 60 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIR 60 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHH
Confidence 357888999999999999999887 33333221 013456777777777666655544
No 142
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.11 E-value=3e-06 Score=60.44 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~ 55 (119)
+..++|+|+||+||||+++.++..+ .+.+++..++....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 4569999999999999999999865 35677777765443
No 143
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=2.2e-06 Score=55.61 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++|+|+||+|||++++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999875
No 144
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.10 E-value=2e-06 Score=62.56 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDM 51 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l 51 (119)
.+..++|+|+||+|||++|+++++..+..++ +..++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l 153 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence 4567999999999999999999999876554 44443
No 145
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.10 E-value=1.8e-06 Score=58.27 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~ 52 (119)
....++|+|+||+||||+++.+++.++ +.+++..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 356799999999999999999998643 4566666544
No 146
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.10 E-value=1.8e-06 Score=58.58 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
...|+|+|++||||||+|..|+++.+ .+++.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 45789999999999999999999876 6676654
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.10 E-value=2.1e-06 Score=61.11 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------cccc-chhHHH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHL-STGDML 52 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~i-s~~~l~ 52 (119)
+..+..|.|+|++||||||+++.|+..++ ...+ +.|+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 44677899999999999999999998764 3444 777654
No 148
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.09 E-value=1e-06 Score=64.49 Aligned_cols=29 Identities=38% Similarity=0.418 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
..+|+|+|+|||||||+++.|++.+++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 35799999999999999999999998877
No 149
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.09 E-value=2.5e-06 Score=58.84 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=25.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDM 51 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l 51 (119)
.++|+|||||||||+++.++...+..+ ++..++
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 499999999999999999998875443 444443
No 150
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.08 E-value=3.5e-06 Score=57.44 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc-chhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAEVSSGSNLGKKLKETMD 71 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i-s~~~l~~~~~~~~~~~~~~~~~~~~ 71 (119)
+..|+|.|++||||||+++.|++.+....+ ++ .+.++ ..++++++.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHh
Confidence 567899999999999999999988743322 11 11111 235678888888876
No 151
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=1.7e-06 Score=56.15 Aligned_cols=25 Identities=44% Similarity=0.525 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...++|+|+||+|||++++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999875
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.07 E-value=2.5e-06 Score=56.54 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
.++.|+|++||||||+.+.|+..+++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999987763
No 153
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.07 E-value=2.6e-06 Score=61.34 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
..++|+||||+||||+++.++..++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 568999999999999999999987643
No 154
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.07 E-value=2.8e-06 Score=58.31 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-Cc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-CV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-~~ 43 (119)
+..|+|.|++||||||+++.|++.+ ++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5689999999999999999999998 44
No 155
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.06 E-value=2.1e-06 Score=68.57 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR 53 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~ 53 (119)
.+..|+|.||||+|||++|+++|.++++.++ +..+++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4567999999999999999999999987665 4445543
No 156
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.06 E-value=2.8e-06 Score=62.30 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML 52 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~ 52 (119)
+..++|+|+||+|||++|+.+|++++..++ +..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 468999999999999999999999876654 444443
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.06 E-value=2.1e-06 Score=55.32 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDML 52 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~ 52 (119)
....++|+|++||||||+++.++..+ | ..+++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 45679999999999999999999865 5 5566655443
No 158
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.05 E-value=2.6e-06 Score=63.87 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC--cccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC--VCHL 46 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~--~~~i 46 (119)
+..++|.||||+|||++|+.+|+.++ +.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 35799999999999999999999987 4444
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.04 E-value=2.9e-06 Score=60.71 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
..++|+|+||+|||++|+.+++.++..++.+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4599999999999999999999987665443
No 160
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.04 E-value=2.5e-06 Score=55.87 Aligned_cols=33 Identities=30% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
.+..+.|+|++||||||+++.+.. +..+++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~ 40 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF 40 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence 456889999999999999997642 444455443
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.02 E-value=3.5e-06 Score=55.73 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.|+||+||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458899999999999999999654
No 162
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.00 E-value=4.2e-06 Score=62.63 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-Ccc--ccchhHHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-CVC--HLSTGDMLRAEV 56 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-~~~--~is~~~l~~~~~ 56 (119)
+..|+|.||||+|||++|+++|..+ +.. .++..+++....
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~ 209 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL 209 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhc
Confidence 4679999999999999999999987 544 456666655433
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=4e-06 Score=63.50 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..|+|+||||+|||++|++++.+.+..++.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 459999999999999999999998766553
No 164
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.00 E-value=5.9e-06 Score=55.78 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
++..|+|+||+||||||+++.|.+.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998764
No 165
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.00 E-value=3.9e-06 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...|+|.|+||+|||++|+.+++..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3459999999999999999998764
No 166
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.99 E-value=4.8e-06 Score=58.27 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
.++|+|+|||||||+++.++...+..++
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 3899999999999999999988754433
No 167
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.98 E-value=5e-05 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+|+||+||||+++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999876
No 168
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.98 E-value=6.5e-06 Score=58.86 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=32.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc------CccccchhHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY------CVCHLSTGDMLRAEVS 57 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~------~~~~is~~~l~~~~~~ 57 (119)
...++|.|+||+|||++|.+++... .+.+++..+++.+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence 4679999999999999999998743 2455788887776543
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.97 E-value=4.3e-06 Score=56.01 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++|+||+||||||+.+.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998754
No 170
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=4.8e-06 Score=63.35 Aligned_cols=31 Identities=42% Similarity=0.487 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
...++|+||||+|||++|+.+++.+++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4579999999999999999999998876653
No 171
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.97 E-value=3.6e-06 Score=54.87 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+.+.+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 55566789999999999999999999853
No 172
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.97 E-value=1.9e-06 Score=54.87 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC-ccccchhHHHH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC-VCHLSTGDMLR 53 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~-~~~is~~~l~~ 53 (119)
..|+|.|+||+|||++|+.+++..+ +.+++..++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~ 64 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLI 64 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHH
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCCh
Confidence 4599999999999999999988765 45556555433
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.96 E-value=3.3e-05 Score=54.87 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
..+++.|+||+|||++++.+++.++..++.+
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3567778899999999999999988666544
No 174
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.94 E-value=2.2e-05 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
-|+|-|.-||||||+++.|++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999999999999999876
No 175
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.93 E-value=7.5e-06 Score=53.63 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 5 AYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 5 ~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++|+..........+|+|+|.+|+||||+...|...
T Consensus 10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 10 HSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp ----CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence 333333444555689999999999999999999753
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.92 E-value=3.4e-06 Score=64.93 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDMLR 53 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l~~ 53 (119)
.++..|+|+|++||||||+++.|+..++ +.+++.+++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 4567899999999999999999999873 44577666543
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.91 E-value=6.8e-06 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhHc
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~ 41 (119)
|+|+||+||||||+++.|.+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998764
No 178
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.91 E-value=4.8e-06 Score=54.59 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+..+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 55566789999999999999999999754
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.90 E-value=8e-06 Score=61.29 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
..++|+||||+||||+|+.|++.++..++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 468999999999999999999988765543
No 180
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.89 E-value=8.2e-06 Score=61.92 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML 52 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~ 52 (119)
+..++|+|+||+|||++|++++...+..++ +..++.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 456999999999999999999999876554 555554
No 181
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.89 E-value=5.8e-06 Score=56.30 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=17.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHH-hHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFA-KKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la-~~~ 41 (119)
.+..+.|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45688999999999999999999 543
No 182
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.89 E-value=7.8e-06 Score=53.54 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+..+|+|+|.+|+||||+...|..
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHc
Confidence 5566678999999999999999999974
No 183
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.89 E-value=9.6e-06 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..++|+|+||+|||++|+.+++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 369999999999999999999875
No 184
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.89 E-value=9.8e-06 Score=53.21 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.+..+|+|+|.+|+||||+...+...
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44445579999999999999999887653
No 185
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.88 E-value=8e-06 Score=55.64 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..++|.||||+||||+|.+|++.++-.++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 46999999999999999999988653333
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.88 E-value=1.4e-05 Score=59.73 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc-----C--ccccchhHHHHHH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY-----C--VCHLSTGDMLRAE 55 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~-----~--~~~is~~~l~~~~ 55 (119)
...++|.|+||+||||+++.++... + +.+++..++..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~ 175 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 4569999999999999999999865 3 4566777765443
No 187
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.87 E-value=1.1e-05 Score=59.34 Aligned_cols=32 Identities=25% Similarity=0.159 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.+..++|+|||||||||+++.|+..++..+++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 45689999999999999999999887655544
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.87 E-value=1.1e-05 Score=54.11 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+..+.|+||+||||||+++.|+..+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3456789999999999999999998755
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.87 E-value=9.8e-06 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+||+||||||+++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678999999999999999998765
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.86 E-value=1e-05 Score=58.39 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 357999999999999999999998763
No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.85 E-value=1.2e-05 Score=54.86 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
+.+..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456899999999999999999987653
No 192
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.85 E-value=1.2e-05 Score=57.69 Aligned_cols=28 Identities=18% Similarity=0.143 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+..|.|+|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999999754
No 193
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.85 E-value=1.1e-05 Score=61.46 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL 46 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~i 46 (119)
..++|+||||+||||++++++...+..++
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34999999999999999999998765443
No 194
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.84 E-value=1.1e-05 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999864
No 195
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.84 E-value=7.3e-06 Score=58.05 Aligned_cols=28 Identities=39% Similarity=0.582 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
..++|+|+||+|||++|+.+++.++..+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4699999999999999999999877554
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.83 E-value=1.6e-05 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++|+|++|+||||+++.+++.++
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 197
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.82 E-value=1.7e-05 Score=52.06 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.......+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 44455579999999999999999999753
No 198
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.82 E-value=8.9e-06 Score=65.05 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEV 56 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~ 56 (119)
.+..|++.||||+|||.+|+++|.+.+..++ +..+++....
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 3457999999999999999999999987665 5556665544
No 199
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.81 E-value=1.2e-05 Score=55.61 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~ 50 (119)
..++|+|+||+|||++|+.+++..+ +.+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 4699999999999999999998653 44555443
No 200
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.81 E-value=6.8e-06 Score=58.71 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCH 45 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~ 45 (119)
..++|.|+||+|||++|+.+++.++..+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3699999999999999999999876543
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.81 E-value=1.4e-05 Score=60.23 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+++|+|+||+|||++|+.+++..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999985
No 202
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.80 E-value=1.3e-05 Score=61.49 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
++..++|+||||+||||+++.++..++..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45689999999999999999999987644
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.80 E-value=1.1e-05 Score=64.62 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST 48 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~ 48 (119)
..+..|+|+|+|||||||+|+.++..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3456799999999999999999999887655433
No 204
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.79 E-value=1.5e-05 Score=57.61 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++|+|+||+|||++++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999865
No 205
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.78 E-value=9e-06 Score=58.62 Aligned_cols=27 Identities=11% Similarity=-0.117 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.+++|.||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.78 E-value=1.4e-05 Score=54.35 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFA 38 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la 38 (119)
.++..+.|+||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999999999888
No 207
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.76 E-value=1.5e-05 Score=52.70 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.+..+|+|+|.+|+|||++.+.+..++
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 556667899999999999999999887643
No 208
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.76 E-value=2.1e-05 Score=51.87 Aligned_cols=26 Identities=19% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
....+.|+|++||||||++..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999998763
No 209
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.76 E-value=1.4e-05 Score=53.25 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=23.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhHcC--ccccch
Q psy9244 20 AILLGPPGSGKGTQAPLFAKKYC--VCHLST 48 (119)
Q Consensus 20 i~i~G~pGsGKstla~~la~~~~--~~~is~ 48 (119)
++|+|++|||||++|..++.+ + ..|+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 789999999999999999977 5 345555
No 210
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.75 E-value=1.5e-05 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+..+|+|+|.+|+||||+...|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3479999999999999999999854
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.74 E-value=1.7e-05 Score=57.02 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..++|+|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999865
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.74 E-value=1.7e-05 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+.|+|++||||||+++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999863
No 213
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.73 E-value=1.9e-05 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.236 Sum_probs=23.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+.++..+|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 5556678999999999999999999985
No 214
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.72 E-value=2.2e-05 Score=51.43 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|.+|+||||+...|...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 444579999999999999999999863
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=2.5e-05 Score=61.77 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+++|+|+||+|||++|+.||+.+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999986
No 216
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=3.1e-05 Score=51.73 Aligned_cols=34 Identities=32% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc--Cccccchh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTG 49 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~ 49 (119)
.+..++|+|+|||||||++..++... ++.+++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 45689999999999999999998633 35555544
No 217
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.68 E-value=3.1e-05 Score=55.54 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++.++.|+||+||||||+++.|+.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45689999999999999999999765
No 218
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.68 E-value=2.7e-05 Score=51.09 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+....+|+|+|.+|+|||++...+...
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 33445579999999999999999998753
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.67 E-value=3.4e-05 Score=51.76 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~ 48 (119)
.+..++|+|++||||||+++.++.. ..+.+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4567899999999999999999853 23555554
No 220
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.67 E-value=4.2e-05 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..+.|+|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999653
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.66 E-value=3.7e-05 Score=53.79 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.....++|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999999999998754
No 222
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.66 E-value=4.2e-05 Score=49.71 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..+.|+|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345688999999999999999999865
No 223
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.66 E-value=3.1e-05 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999765
No 224
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=3e-05 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|.|+||+||||+++.+++.+
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999875
No 225
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.65 E-value=2.6e-05 Score=51.31 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999964
No 226
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.65 E-value=1.4e-05 Score=63.97 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS 47 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is 47 (119)
.+..++|+||||+|||++|+.+|..++..++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34568999999999999999999987655443
No 227
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.65 E-value=1.7e-05 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=22.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.++|+|+||+|||++|+.+++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999998775
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.64 E-value=4e-05 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++..+.|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999754
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.64 E-value=3.1e-05 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+||.||||||+.+.|+.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568899999999999999999853
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.63 E-value=4.8e-05 Score=54.15 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+...+.+++|+|++||||||++..||..+
T Consensus 101 ~~~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 101 EPIHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCCCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999999998643
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=3.7e-05 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+||||+||||+++.+++.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999874
No 232
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.63 E-value=2.4e-05 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=24.7
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...++..|.|.|+.||||||+++.|+...
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~ 44 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhcc
Confidence 34567789999999999999999998763
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.62 E-value=3.6e-05 Score=60.79 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDM 51 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l 51 (119)
.++|+|+||+|||++|+.+++.++..+ +++.++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 699999999999999999999887443 455444
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.62 E-value=4.1e-05 Score=54.82 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456788999999999999999999754
No 235
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.61 E-value=4.4e-05 Score=50.42 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=21.9
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+..+|+|+|.+|+||||+...+...
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44556789999999999999999999753
No 236
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.60 E-value=4.5e-05 Score=54.48 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..+.|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
No 237
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=3.6e-05 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+..++..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh
Confidence 3457999999999999999999875
No 238
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.60 E-value=4.3e-05 Score=58.15 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++|.|+||+|||++|+.+++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4699999999999999999998763
No 239
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=3.9e-05 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+||+|+||||+++.++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999853
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.58 E-value=4.2e-05 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+|||||||++..++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568899999999999999999873
No 241
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.58 E-value=6.9e-05 Score=56.10 Aligned_cols=28 Identities=36% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+..|+++|++||||||++..||..+
T Consensus 94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp CSSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999999998643
No 242
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=5.7e-05 Score=53.23 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|.|+||+||||+++.+++.+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 59999999999999999999875
No 243
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.57 E-value=4.4e-05 Score=52.63 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999864
No 244
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.57 E-value=6e-05 Score=49.74 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...++|+|++||||||+++.|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457899999999999999999875
No 245
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.57 E-value=2.4e-05 Score=51.27 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...|...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcC
Confidence 4579999999999999999999864
No 246
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.56 E-value=7.2e-05 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..++|.||||+|||++|.+||..+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 469999999999999999999864
No 247
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.56 E-value=6e-05 Score=53.43 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~ 50 (119)
..++|+|++|+|||++++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 578999999999999999999988877776644
No 248
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.56 E-value=6.4e-05 Score=54.02 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..++|+|++|+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999998754
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.56 E-value=3.4e-05 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+--
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999999853
No 250
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.56 E-value=6.3e-05 Score=59.53 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=28.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR 53 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~ 53 (119)
.++|+||||+|||++|+.+++.+ .+..+++.++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 69999999999999999999875 355566665543
No 251
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.55 E-value=9.1e-05 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++..|+++|++||||||++..||..+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998643
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.55 E-value=5.6e-05 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..++|+|+|||||||+++.|+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998864
No 253
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.54 E-value=5.8e-05 Score=47.89 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+||||||+...|...
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999863
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.54 E-value=5e-05 Score=53.10 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999854
No 255
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.53 E-value=5.1e-05 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999864
No 256
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.53 E-value=5e-05 Score=55.24 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
..++.|+|++||||||+++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999987643
No 257
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.52 E-value=4.3e-05 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+||.||||||+.+.|+--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568899999999999999999853
No 258
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.52 E-value=6.5e-05 Score=52.74 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|+|+||+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999874
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.52 E-value=6.7e-05 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.|+|+.||||||+.+.|+.-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999853
No 260
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.51 E-value=5.8e-05 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4568899999999999999999864
No 261
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.51 E-value=7.8e-05 Score=50.22 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3568899999999999999886433
No 262
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.51 E-value=7.4e-05 Score=52.37 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999863
No 263
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.51 E-value=6e-05 Score=53.00 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999999864
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.51 E-value=7.2e-05 Score=54.73 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..+.|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 456789999999999999999999754
No 265
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.50 E-value=4.7e-05 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568899999999999999999853
No 266
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.50 E-value=7.9e-05 Score=49.40 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..++++|++||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999997777653
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.50 E-value=6.3e-05 Score=52.57 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999864
No 268
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.50 E-value=6.4e-05 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+|+.||||||+.+.|+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999996
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.50 E-value=6e-05 Score=51.06 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+.|+|+.||||||+.+.|+.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999985
No 270
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.49 E-value=2.9e-05 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+.|+|++||||||+++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.49 E-value=5.1e-05 Score=52.62 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999864
No 272
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.49 E-value=6.5e-05 Score=50.20 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...+...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44579999999999999999999864
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.48 E-value=5.3e-05 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999853
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.48 E-value=8.2e-05 Score=50.43 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG 49 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~ 49 (119)
.+..++|.|+|||||||+|..++.. .++.+++.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4567899999999999999888753 256666654
No 275
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.48 E-value=6.8e-05 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999853
No 276
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=8.2e-05 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|.|++|+|||++++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999875
No 277
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.48 E-value=5.6e-05 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 278
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.47 E-value=0.00012 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+..+|+|+|.+|+||||+...+..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45678999999999999999999975
No 279
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.47 E-value=9.5e-05 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 45679999999999999999999764
No 280
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.46 E-value=5.2e-05 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557899999999999999999864
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.46 E-value=7.4e-05 Score=52.33 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568899999999999999999853
No 282
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.45 E-value=5.5e-05 Score=60.71 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...++|+|+||+|||++++.+++..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.45 E-value=8.3e-05 Score=48.98 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|++||||||+.+.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.45 E-value=6.3e-05 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999864
No 285
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.45 E-value=9.3e-05 Score=48.87 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|++||||||+.+.|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 286
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.44 E-value=9.6e-05 Score=54.15 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.....++|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998754
No 287
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.43 E-value=0.0001 Score=49.00 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
..-++|+|++|+||||+|..|.++ |...++-|
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD 47 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVCDD 47 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence 456899999999999999999874 66666544
No 288
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.43 E-value=9.4e-05 Score=51.71 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+.|+|++||||||++..++.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999885
No 289
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.43 E-value=0.0001 Score=56.07 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..|.|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 456789999999999999999999753
No 290
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.42 E-value=0.0001 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|.+|+||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 291
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.42 E-value=0.00011 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
++|+|+|.+|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 292
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.42 E-value=0.0001 Score=47.04 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+..+|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 4578999999999999999999753
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.42 E-value=7.3e-05 Score=52.00 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999999854
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.42 E-value=7.2e-05 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999999864
No 295
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=0.00011 Score=47.29 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.....+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34566789999999999999999999753
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00014 Score=47.44 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|++||||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45679999999999999999999864
No 297
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00014 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+|+|+|++|+||||+...|+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999986
No 298
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.40 E-value=9e-05 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
....++|+|++||||||+.+.|+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34689999999999999999999865
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.40 E-value=0.00011 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||+||||||+.+.|+-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 456789999999999999999995
No 300
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.40 E-value=0.00012 Score=48.23 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=21.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+....+|+|+|.+|+||||+...+..
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456678999999999999999999974
No 301
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.40 E-value=0.00014 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|++|+||||+...|...
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345679999999999999999999864
No 302
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.40 E-value=9e-05 Score=52.74 Aligned_cols=24 Identities=21% Similarity=0.327 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...|+|+|+||+|||++|+.+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 346999999999999999999985
No 303
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.39 E-value=0.00016 Score=45.94 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+|+|+|.+|+||||+...+..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567999999999999999999975
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.39 E-value=0.00011 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+++|.+|+||||+...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999999754
No 305
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.39 E-value=0.00014 Score=46.67 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+|+|+|.+|+||||+...+...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999999753
No 306
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.39 E-value=0.00012 Score=47.04 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+||||||+...+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 45679999999999999999998753
No 307
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.39 E-value=0.00011 Score=47.50 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+..+|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 308
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.39 E-value=0.00012 Score=47.60 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.|....+|+|+|.+|+||||+..++...
T Consensus 12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 12 APDQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence 3466789999999999999999999754
No 309
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.39 E-value=0.00014 Score=46.99 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+..+|+|+|.+|+||||+...+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 344679999999999999999999853
No 310
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.38 E-value=0.00021 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....|.|+|++|+||||+|..++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 356789999999999999999864
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.38 E-value=8.2e-05 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999853
No 312
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.38 E-value=0.00011 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 345689999999999999999999864
No 313
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.38 E-value=0.00014 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+|+|+|.||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998654
No 314
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.38 E-value=0.00016 Score=47.06 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34679999999999999999999864
No 315
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.38 E-value=0.00013 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+|+|+|.+||||||++..|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 316
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.38 E-value=0.00014 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..+|+|+|.+||||||++..++...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998763
No 317
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.38 E-value=0.00013 Score=53.37 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||+||||||+.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 456789999999999999999995
No 318
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+++.|+|++||||||+.+.|+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998643
No 319
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.37 E-value=0.00015 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|.+|+||||+...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999999753
No 320
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=48.91 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.....+|+|+|.+|+||||+...+..
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHhh
Confidence 34457999999999999999999975
No 321
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.37 E-value=0.00012 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+|+|+|++|+||||+..+|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 322
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.37 E-value=0.00013 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+..+.|+|+|||||||+.+.|+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999985
No 323
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=8.7e-05 Score=47.92 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+|+|+|++|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999873
No 324
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.37 E-value=0.00014 Score=47.73 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=23.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+....+|+|+|.+||||||+...+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 445689999999999999999999753
No 325
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.37 E-value=0.00013 Score=53.73 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||+||||||+.+.|+-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 456789999999999999999995
No 326
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.00013 Score=57.68 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
....++|+|+||+|||++++.+++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999875
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.35 E-value=0.00014 Score=53.21 Aligned_cols=24 Identities=46% Similarity=0.547 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 456789999999999999999985
No 328
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.35 E-value=0.00011 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~ 39 (119)
.+|+|+|++|+||||+...++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 329
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.35 E-value=0.00013 Score=52.90 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc--Cccccch
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY--CVCHLST 48 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~--~~~~is~ 48 (119)
..++|.|+||+|||++|..++... .+.+++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 356899999999999999998753 4557776
No 330
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.35 E-value=0.0001 Score=59.16 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..++|+|+||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999875
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.35 E-value=0.00014 Score=47.06 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4467999999999999999999985
No 332
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00011 Score=55.30 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+++.|+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4678999999999999999999864
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.34 E-value=0.00015 Score=53.32 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 456789999999999999999995
No 334
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.34 E-value=0.00016 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.-.++|+||+||||||+.+.++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999997653
No 335
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.34 E-value=0.00014 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+..+|+|+|.+|+||||+..++..
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 445667999999999999999999986
No 336
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.34 E-value=0.00026 Score=45.90 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 44568999999999999999999764
No 337
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.33 E-value=0.00019 Score=51.61 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVC 44 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~ 44 (119)
+..++|.|++|+|||++|+.+++.+...
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 4469999999999999999999987643
No 338
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.33 E-value=0.00014 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+|+|+|.+|+||||+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999974
No 339
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.33 E-value=0.00012 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 340
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.33 E-value=0.00016 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+|+|+|.+|+||||+...+..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999975
No 341
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.33 E-value=0.0002 Score=47.33 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.-+....+|+|+|.+|+||||+...+...
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 33445579999999999999999999863
No 342
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.33 E-value=0.00015 Score=45.90 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+|+|+|.+|+||||+..++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCC
T ss_pred eEEEEEECCCCCCHHHHHHHHcC
Confidence 46899999999999999999864
No 343
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.32 E-value=0.00013 Score=53.30 Aligned_cols=24 Identities=50% Similarity=0.596 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456789999999999999999985
No 344
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00015 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+|+|+|.+|+||||+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999985
No 345
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.32 E-value=0.00019 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45689999999999999999999753
No 346
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.32 E-value=0.00018 Score=51.79 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+..|.|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999998754
No 347
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00014 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+.++.|+|+.||||||+.+.|+.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999853
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.30 E-value=0.00018 Score=52.85 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 4567899999999999999999853
No 349
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.30 E-value=0.00014 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999854
No 350
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.30 E-value=0.00014 Score=54.46 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG 49 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~ 49 (119)
.+.+|+|+|++||||||++..||..+ .+.+++.|
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45689999999999999999999764 35555544
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.30 E-value=0.00016 Score=47.04 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 352
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.29 E-value=0.00019 Score=52.09 Aligned_cols=25 Identities=40% Similarity=0.596 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....|.|+|+|||||||+...|...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 353
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.29 E-value=0.00013 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+|+|+|.+|+||||+...+..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 447899999999999999999974
No 354
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.29 E-value=0.00018 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~ 39 (119)
.+|+|+|.+|+||||+...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999963
No 355
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=46.65 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 4557999999999999999999864
No 356
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.29 E-value=0.00019 Score=47.14 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+..+|+|+|.+|+|||++...+..
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 445678999999999999999999964
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.29 E-value=0.00014 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|+|+.||||||+.+.|+.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4567899999999999999999864
No 358
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.28 E-value=0.00015 Score=46.86 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999853
No 359
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.28 E-value=0.00014 Score=52.84 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|++||||||++..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998765
No 360
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.28 E-value=0.0001 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999985
No 361
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.28 E-value=0.00015 Score=53.19 Aligned_cols=24 Identities=46% Similarity=0.673 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 356789999999999999999985
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.28 E-value=0.00019 Score=46.24 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 34579999999999999999999853
No 363
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.28 E-value=9.3e-05 Score=53.03 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45688999999999999999998643
No 364
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.27 E-value=0.00018 Score=55.21 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 11 ESHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 11 ~~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.|+++..+.|+|+.||||||+.+.|+-.
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 367888899999999999999999999864
No 365
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.27 E-value=0.00012 Score=53.41 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 456789999999999999999995
No 366
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.27 E-value=9.1e-05 Score=49.07 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|++||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999998864
No 367
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.27 E-value=0.00017 Score=55.85 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
..++|+|+||+||||+|+.|+..+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4799999999999999999998763
No 368
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.27 E-value=0.00017 Score=46.07 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34579999999999999999999854
No 369
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.26 E-value=0.00024 Score=46.82 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|.+|+|||++..++...
T Consensus 3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 3 GMTYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 345679999999999999999999853
No 370
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.26 E-value=0.00019 Score=53.04 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||+||||||+.+.|+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 456889999999999999999985
No 371
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.26 E-value=0.00017 Score=48.03 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3457999999999999999999975
No 372
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00017 Score=46.92 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+|+|+|.+|+||||+..++..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5678999999999999999999984
No 373
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.26 E-value=0.00021 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|.+||||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998753
No 374
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.26 E-value=0.00027 Score=52.25 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.....+.++.|+|+||+||||+.++|..
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5566778999999999999999999987
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.26 E-value=0.00021 Score=45.28 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+..+|+|+|.+|+||||+...+...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3478999999999999999999764
No 376
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00023 Score=46.68 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+....+|+|+|.+|+||||+...+...
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345689999999999999999999754
No 377
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.26 E-value=0.0002 Score=47.36 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+..+|+|+|++|+||||+..++..
T Consensus 21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 21 LYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 456678999999999999999999974
No 378
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.26 E-value=0.00023 Score=48.76 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+...++++|++||||||.+..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345688999999999999998888765
No 379
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.00012 Score=52.27 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|.|+||||||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999864
No 380
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.25 E-value=0.00018 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 4568999999999999999999874
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.25 E-value=0.00023 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
..-.++|+||+||||||+.+.++..+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 44578999999999999999998765
No 382
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.25 E-value=0.00011 Score=53.30 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
++..|.|-|+-||||||+++.|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4578899999999999999999998753
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.25 E-value=0.00022 Score=46.26 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+|+|+|.+|+||||+...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 56789999999999999999999753
No 384
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.25 E-value=0.00026 Score=45.51 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34679999999999999999999753
No 385
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.25 E-value=0.00021 Score=46.38 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
....+|+|+|.+|+||||+.+.+...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3457999999999999999988876543
No 386
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.24 E-value=0.00021 Score=46.52 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|.+|+||||+..+|...
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcC
Confidence 345679999999999999999999863
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.24 E-value=0.00016 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+|+|+|.+|+||||+...|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 44679999999999999999999753
No 388
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.24 E-value=0.00019 Score=48.88 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....++|+|+|.+|+||||+...|...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 345679999999999999999999853
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.23 E-value=0.00027 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+|+|.+|+|||++...+...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999999753
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.23 E-value=0.00019 Score=46.16 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...+...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44578999999999999999999753
No 391
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.23 E-value=0.00022 Score=52.10 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~ 50 (119)
++..+.|.|+|||||||+|..++... .+.+++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34578999999999999999998653 245666544
No 392
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.22 E-value=0.00017 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 357999999999999999999974
No 393
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.21 E-value=0.00015 Score=52.29 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+.|+|++||||||+.+.|+..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999998764
No 394
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.20 E-value=0.00019 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+||||||+...+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999753
No 395
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.20 E-value=0.00025 Score=54.06 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999643
No 396
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.19 E-value=9.5e-05 Score=57.32 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCV 43 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~ 43 (119)
...++|+|+||+|||++|+.+++..+.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCC
Confidence 347999999999999999999987653
No 397
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.19 E-value=0.00025 Score=46.66 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 45679999999999999999999754
No 398
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.19 E-value=0.00015 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999863
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.19 E-value=0.00032 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+...++++|.+|+||||++..|+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999854
No 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.19 E-value=0.00036 Score=47.08 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|.+|+||||+...|...
T Consensus 26 ~~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 26 NPHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp CTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356789999999999999999999753
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.18 E-value=0.00012 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+.|+||.||||||+.+.|+-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456789999999999999999995
No 402
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.18 E-value=0.00034 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 457999999999999999999975
No 403
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.17 E-value=0.00024 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+|+|+|.+|+||||+...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999863
No 404
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.16 E-value=0.00028 Score=51.58 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..+|+|+|.+||||||+++.+.--|
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 567899999999999999999985433
No 405
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.16 E-value=0.00026 Score=47.28 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+.+..+|+|+|.+|+||||+...+..
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHc
Confidence 44568999999999999999999975
No 406
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.15 E-value=0.0004 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG 49 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~ 49 (119)
...+|++.|+||+||||++..+|..+ | +.+++++
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34689999999999999988887653 3 4444554
No 407
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.15 E-value=0.00023 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..++|+|++||||||+.+.|+...
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999998653
No 408
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.14 E-value=0.00031 Score=47.53 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..++|.|+||+|||++|..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999988764
No 409
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.14 E-value=0.0002 Score=46.20 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+|+|+|.+|+||||+...+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999984
No 410
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.14 E-value=0.00033 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+|+|+|.+|+||||+..++...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999853
No 411
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.14 E-value=0.00029 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFA 38 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la 38 (119)
....+.|+|+|||||||++..|+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 45678999999999999999776
No 412
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.14 E-value=0.00027 Score=46.24 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=23.1
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+..+|+|+|.+|+||||+...+...
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 33455689999999999999999999864
No 413
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.13 E-value=0.00042 Score=49.16 Aligned_cols=29 Identities=34% Similarity=0.323 Sum_probs=24.1
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+. .+..+.|+|++|+||||++..||..+
T Consensus 94 ~~~-~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 94 VLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred ecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444 67788899999999999999998653
No 414
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.13 E-value=0.00032 Score=50.97 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~ 50 (119)
++..+.|.|+|||||||+|..++... .+.+++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45678999999999999999998542 466676653
No 415
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.13 E-value=0.00022 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+..++..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999863
No 416
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.13 E-value=0.00035 Score=44.98 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...+..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 417
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.13 E-value=0.00031 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|+|||||||+..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999853
No 418
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.13 E-value=0.00036 Score=49.65 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..++++|++|+||||++..||..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788899999999999999998654
No 419
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.12 E-value=0.00035 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+|.|+|+||+||||++..|+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999854
No 420
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.11 E-value=0.00037 Score=50.38 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|.|+||||||++|..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999875
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.10 E-value=0.00039 Score=45.91 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=21.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.....+|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34568999999999999999999974
No 422
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.09 E-value=0.00034 Score=45.53 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
..+|+|+.||||||+.++|+--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999997644
No 423
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.09 E-value=0.00037 Score=49.35 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchh
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTG 49 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~ 49 (119)
..++|+|++|+|||++++.+++..+ ..+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 4789999999999999999998753 3455543
No 424
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.09 E-value=0.00027 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+|+|+|.+|+||||+..++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 5678999999999999999999853
No 425
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.09 E-value=0.00027 Score=51.31 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCceEEE--EcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAIL--LGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i--~G~pGsGKstla~~la~~~ 41 (119)
.+..++| +|++|+|||++++.+++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 3456788 9999999999999998764
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.08 E-value=0.00036 Score=47.99 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+|+|+|.+|+||||+...|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 345689999999999999999999753
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.08 E-value=0.00039 Score=45.72 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999753
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.08 E-value=0.00025 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+..+|+|+|.+|+|||++..++...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999999863
No 429
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.07 E-value=0.00041 Score=45.99 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=21.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
..+..+|+|+|.+|+||||+...+..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 34567999999999999999999875
No 430
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.06 E-value=0.00046 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++.+|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446788899999999999999998543
No 431
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.00045 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+..+|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4579999999999999999999753
No 432
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00054 Score=53.29 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=24.9
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+..+.|+||.||||||+.+.|+-.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence 5667889999999999999999999854
No 433
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.02 E-value=0.00042 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+..+.|.|+||||||++|..++..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3567899999999999999999865
No 434
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.02 E-value=0.00036 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+|+|+|.||+||||+..+|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 4457899999999999999999985
No 435
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.00051 Score=49.35 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.+..+..+|+|+|.+|+||||+...|..
T Consensus 160 ~~~~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 160 LFGKKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp ---CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred ccccCcceEEEECCCCccHHHHHHHHhC
Confidence 4455667999999999999999999864
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.01 E-value=0.00049 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.++.|+|+.||||||+.+.|+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56778999999999999999999854
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.01 E-value=0.00054 Score=49.98 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG 49 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~ 49 (119)
+...++|.|+|||||||+|..++.. ..+.+++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4567899999999999999999864 246677773
No 438
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.00 E-value=0.00048 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999975
No 439
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.00 E-value=0.0003 Score=51.76 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
.....|.|-|+-||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456788999999999999999998764
No 440
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.00 E-value=0.00051 Score=50.23 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..+.|+|++||||||+.+.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4578999999999999999998543
No 441
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.99 E-value=0.00057 Score=45.71 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
......+|+|+|.+|+|||++...+...
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3345689999999999999999999753
No 442
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.98 E-value=0.00045 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~ 40 (119)
++.|+|++||||||+.+.|+..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3999999999999999999853
No 443
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.98 E-value=0.00049 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++|.|+|||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999988764
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.97 E-value=0.00052 Score=52.91 Aligned_cols=26 Identities=46% Similarity=0.724 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34688999999999999999998654
No 445
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.97 E-value=0.00062 Score=48.62 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~ 48 (119)
++..++|.|+||+||||+|..++... .+.++|+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45679999999999999999998642 3555654
No 446
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.96 E-value=0.00058 Score=50.02 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD 50 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~ 50 (119)
.+..++|.|+|||||||+|..++.. ..+.+++++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3457888999999999999998864 2466777654
No 447
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.95 E-value=0.00046 Score=53.20 Aligned_cols=26 Identities=42% Similarity=0.672 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..+.|+|+.||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34688999999999999999998654
No 448
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.95 E-value=0.00043 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457899999999999999999853
No 449
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.93 E-value=0.00081 Score=44.92 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.++..++++|++||||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345688999999999999999988875
No 450
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.93 E-value=0.00066 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
...+.|+|++||||||+.+.|+ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999998 54
No 451
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.93 E-value=0.00031 Score=50.91 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYC 42 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~ 42 (119)
...|.|-|+-||||||+++.|++.++
T Consensus 4 ~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45788999999999999999998764
No 452
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.93 E-value=0.00032 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=11.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+|+|+|.+|+||||+...+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 453
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00068 Score=44.88 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+||||+...+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999853
No 454
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.91 E-value=0.00051 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLF 37 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~l 37 (119)
.+..+.|+|++||||||+++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4568999999999999999994
No 455
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.91 E-value=0.00067 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...++|+|+||+||||++..++..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999998864
No 456
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.91 E-value=0.00061 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+.|+|++||||||+.+.|+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34789999999999999999986
No 457
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.90 E-value=0.00067 Score=49.30 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++.++.|+|++|+||||+.+.|+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999865
No 458
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.90 E-value=0.00087 Score=50.06 Aligned_cols=26 Identities=38% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..|.|+|++||||||++..||..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788899999999999999999754
No 459
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.90 E-value=0.00056 Score=48.68 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+.|..+-.|.|+|.||+||||+..+|..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444556899999999999999999975
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.89 E-value=0.00072 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++.++.|+|++||||||+.+.|+...
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999865
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.0007 Score=44.13 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|+|+|.+|+|||++...+...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999999854
No 462
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.88 E-value=0.00011 Score=48.25 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=7.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEEC-----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhC
Confidence 34579999999999999999988754
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00066 Score=45.53 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+||||+...|..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhc
Confidence 4457999999999999999999975
No 464
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.87 E-value=0.00083 Score=50.23 Aligned_cols=33 Identities=24% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH----cC--ccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK----YC--VCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~----~~--~~~is~ 48 (119)
++..++|.|+||+||||++..++.. .| +.+++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4568899999999999999998764 23 556654
No 465
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.87 E-value=0.00057 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|++|+||||+.+.|+.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999864
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.86 E-value=0.00051 Score=53.17 Aligned_cols=26 Identities=42% Similarity=0.708 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..+.|+|+.||||||+.+.|+.-+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 45689999999999999999998654
No 467
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.86 E-value=0.00075 Score=48.54 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
..-++|+|++|+||||+|..|.++ |...++-|
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD 175 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVADD 175 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence 457999999999999999999774 55555433
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.85 E-value=0.0005 Score=53.12 Aligned_cols=25 Identities=44% Similarity=0.747 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
+..+.|+|+.||||||+.+.|+.-+
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4578899999999999999998654
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00061 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
...+.|+|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 35788999999999999999974
No 470
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.85 E-value=0.00078 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLF 37 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~l 37 (119)
..+....+|+|+|.+||||||+...+
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTB
T ss_pred CCcccceEEEEECCCCCCHHHHHHHH
Confidence 34556689999999999999999983
No 471
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.84 E-value=0.003 Score=51.59 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....|.|+|+.|+||||+|+.++..
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988764
No 472
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.82 E-value=0.00042 Score=46.19 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
....+|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34678999999999999999999764
No 473
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.82 E-value=0.00078 Score=51.27 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
++..+.|+|++||||||+++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
No 474
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.00026 Score=47.18 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=21.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
.....+|+|+|.+|+||||+..+|..
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhc
Confidence 44568999999999999999998873
No 475
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.81 E-value=0.00071 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+..+|.|+|+||+||||+..+|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999853
No 476
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.79 E-value=0.00077 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999863
No 477
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.79 E-value=0.00093 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|.||+||||+..+|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999863
No 478
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.00021 Score=47.23 Aligned_cols=27 Identities=11% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
+..+..+|+|+|.+|+||||+...+..
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 345678999999999999999988764
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.00065 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999853
No 480
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.77 E-value=0.0011 Score=44.89 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
|-+..+|+|+|.+|+|||++..++..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence 44557999999999999999999875
No 481
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.77 E-value=0.0014 Score=45.17 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.0
Q ss_pred CCCCCCceEEEEcCC---------CCCHHHHHHHHHh
Q psy9244 12 SHESTGVNAILLGPP---------GSGKGTQAPLFAK 39 (119)
Q Consensus 12 ~~p~~~~~i~i~G~p---------GsGKstla~~la~ 39 (119)
.......+|+|+|.+ |+|||++..++..
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 334556899999999 9999999999986
No 482
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.76 E-value=0.00091 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
++|+|+|.|||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999754
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.76 E-value=0.00043 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
++..+.|+||.||||||+.+.|+..+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45688999999999999999998654
No 484
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.75 E-value=0.0011 Score=49.36 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+|.|+|+||+||||+...|...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999754
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.0011 Score=44.74 Aligned_cols=25 Identities=40% Similarity=0.585 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~ 39 (119)
....+|+|+|.+|+|||++..++..
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999974
No 486
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.74 E-value=0.0012 Score=48.98 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 12 SHESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 12 ~~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.......+|.|+|.||+||||+..+|...
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 56667789999999999999999999854
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.73 E-value=0.00089 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 14 ESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+.++.|+|+.||||||+.+.|+-.
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 356789999999999999999999853
No 488
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.72 E-value=0.0011 Score=48.46 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
...+++|+|++||||||+++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.72 E-value=0.0011 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 18 VNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 18 ~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+.|+|+.||||||+.+.|+.-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 67899999999999999999864
No 490
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.72 E-value=0.00093 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.+.++.|+|+.||||||+.+.|+..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999863
No 491
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.71 E-value=0.00085 Score=49.97 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 13 HESTGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 13 ~p~~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
.....+.|+|+|++||||||+.+.|+..
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCC
Confidence 3344567899999999999999999853
No 492
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.70 E-value=0.00061 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~ 41 (119)
.+..+.|+|+.||||||+.+.|+.-+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34688999999999999999998654
No 493
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.69 E-value=0.0011 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=25.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~ 49 (119)
+.-++|+|++|+||||+|..|.+ .|...++-|
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD 178 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD 178 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence 45689999999999999999876 455555543
No 494
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=96.68 E-value=0.00066 Score=49.35 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCCHHHHH-HHHHhHcC
Q psy9244 14 ESTGVNAILLGPPGSGKGTQA-PLFAKKYC 42 (119)
Q Consensus 14 p~~~~~i~i~G~pGsGKstla-~~la~~~~ 42 (119)
+.++..|+|-|+-||||||++ +.|++.++
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 344678999999999999999 99998775
No 495
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.66 E-value=0.0013 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~~ 40 (119)
..+|+|+|.|||||||+..+|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 496
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.66 E-value=0.0011 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKK 40 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~ 40 (119)
+...|+|+|.||+||||+..+|...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999753
No 497
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.65 E-value=0.0015 Score=48.77 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccch
Q psy9244 16 TGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLST 48 (119)
Q Consensus 16 ~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~ 48 (119)
++..++|.|+||+|||++|..++... | +.++|+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 45678999999999999999988642 2 556655
No 498
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.64 E-value=0.0022 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHh
Q psy9244 17 GVNAILLGPPGSGKGTQAPLFAK 39 (119)
Q Consensus 17 ~~~i~i~G~pGsGKstla~~la~ 39 (119)
...|.|+|+.|+||||+|+.++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHH
Confidence 45789999999999999999875
No 499
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.64 E-value=0.00072 Score=58.70 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHH
Q psy9244 15 STGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDML 52 (119)
Q Consensus 15 ~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~ 52 (119)
.++..++|.||||+||||+|..++.. ..+.++++.+.+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 45678999999999999999999764 346688877543
No 500
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.63 E-value=0.0013 Score=47.60 Aligned_cols=32 Identities=22% Similarity=0.138 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhHc-----C--ccccchhH
Q psy9244 19 NAILLGPPGSGKGTQAPLFAKKY-----C--VCHLSTGD 50 (119)
Q Consensus 19 ~i~i~G~pGsGKstla~~la~~~-----~--~~~is~~~ 50 (119)
++.|.|+|||||||+|..++... + +.+++..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 68999999999999988876432 2 45666543
Done!