RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9244
(119 letters)
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 170 bits (433), Expect = 4e-55
Identities = 59/93 (63%), Positives = 74/93 (79%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
ILLGPPG+GKGTQA A+KY + H+STGDMLRA V +G+ LGK+ K MDAG+LV D
Sbjct: 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
E+V+ L+ L +P+C+NGFLLDGFPRT+PQAE
Sbjct: 62 EIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAE 94
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 168 bits (428), Expect = 1e-54
Identities = 59/96 (61%), Positives = 76/96 (79%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81
LLGPPG+GKGTQA +KY + HLSTGD+LRAEV SG+ LGK+ KE MD G+LV DE+V
Sbjct: 1 LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60
Query: 82 VDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
+ L+ L++ +C+NGFLLDGFPRTVPQAE + ++
Sbjct: 61 IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEML 96
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 167 bits (424), Expect = 5e-54
Identities = 60/101 (59%), Positives = 78/101 (77%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
+LLGPPGSGKGTQA AKKY + H+STGD+LR E++SG+ LGKK KE +D+GKLV D
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
E+V+ L+ L KP+C+ GF+LDGFPRTV QAE + L+ +
Sbjct: 61 EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE 101
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 155 bits (393), Expect = 4e-49
Identities = 54/95 (56%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
+LLGPPGSGKGTQA A+KY + H+STGD+LRAE+ +G+ LGKK KE M+ G+LV D
Sbjct: 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60
Query: 79 ELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEK 112
E+V L+ L + + +NGF+LDGFPRT+ QAE
Sbjct: 61 EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEA 95
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 139 bits (351), Expect = 2e-42
Identities = 60/99 (60%), Positives = 78/99 (78%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
IL+GPPGSGKGTQ+P+ +YC+CHL+TGDMLRA V++ + LG K KE MD G+LVSD+L
Sbjct: 35 ILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 94
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
VV +I + KP CQ GF+LDGFPRTV QA+K+ ++ K
Sbjct: 95 VVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAK 133
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 124 bits (314), Expect = 1e-37
Identities = 45/91 (49%), Positives = 66/91 (72%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++LGPPG+GK T A AKK + HL TGD+LRA ++ + LG+++K+ +D G+LV DE+
Sbjct: 4 LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V L+ LD+ +C+ GF+LDGFPRT+ QA
Sbjct: 64 VNGLVKERLDEADCKAGFILDGFPRTLCQAR 94
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 126 bits (318), Expect = 1e-36
Identities = 55/97 (56%), Positives = 76/97 (78%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
ILLGPPG+GKGTQA ++Y + LSTGDMLRA V++G+ +G K K+ M +G LV DE+
Sbjct: 4 ILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEV 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
VV +IS+ +++P+ NGF+LDGFPRTVPQAE + +L+
Sbjct: 64 VVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALL 100
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 119 bits (300), Expect = 2e-35
Identities = 46/91 (50%), Positives = 63/91 (69%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
I LGPPG+GKGTQA + A+ + H+STGD+LR + + LG K + MD G+LV D+L
Sbjct: 5 IFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQL 64
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
V+DL+ L +P+ NG++LDGFPR V QA
Sbjct: 65 VLDLVQERLQQPDAANGWILDGFPRKVTQAA 95
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 117 bits (295), Expect = 1e-34
Identities = 51/102 (50%), Positives = 69/102 (67%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N IL GPP +GKGTQA ++ + LSTGDMLRA ++SGS LG+++K MD G+LVS
Sbjct: 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
DE+V+ LI L + E G + DGFPRTV QAE + ++
Sbjct: 61 DEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLAS 102
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 110 bits (276), Expect = 9e-32
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+ LGPPG+GKGTQA + + HLSTGD+LR+EV++GS LG++ + M+ G+LVSD L
Sbjct: 6 LFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDAL 65
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
V+ ++ + L G+LLDGFPRTV QAE + L+
Sbjct: 66 VLAIVESQLKALNSG-GWLLDGFPRTVAQAEALEPLL 101
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 108 bits (272), Expect = 3e-31
Identities = 46/99 (46%), Positives = 70/99 (70%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N I +GPPG+GKGTQA + ++ + +STGD+LR V + + +G + K MDAG LV D
Sbjct: 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
+V+ +I + + + +C+NGFLLDGFPRTV QA+ + +L+
Sbjct: 63 SVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALL 101
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 114 bits (286), Expect = 6e-31
Identities = 44/97 (45%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
G P SGKGTQ L K+ + H+STGD+LRAEVS+G+++GK+ KE M++G+LV DE+V+
Sbjct: 4 GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63
Query: 84 LISNNLDKPE-CQNGFLLDGFPRTVPQAEKVYSLMMK 119
+++ L + + + G+LLDG+PR+ QA+ + L ++
Sbjct: 64 MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIR 100
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 107 bits (268), Expect = 9e-30
Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 6/117 (5%)
Query: 1 MAPLAYPLPKESHES----TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56
+ LA L S VN + LG PG GKGT A +K V H++TGD++R E+
Sbjct: 9 TSALADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI 68
Query: 57 SSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ--NGFLLDGFPRTVPQAE 111
S LG +LKE ++ GKLV DE++ L+S L+ E + +GF+LDGFPRTV QAE
Sbjct: 69 KSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAE 125
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 99.1 bits (247), Expect = 2e-27
Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81
++G PGSGKGTQ +KY HLSTGD+LRAEV+SGS GK+L+ M++G LV + V
Sbjct: 8 IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67
Query: 82 VDLISNN-LDKPECQNGFLLDGFPRTVPQAEK 112
+DL+ + + GFL+DG+PR V Q E+
Sbjct: 68 LDLLKDAMVAALGTSKGFLIDGYPREVKQGEE 99
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 99.1 bits (247), Expect = 2e-27
Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
I LGPPG+GKGTQA A++ + LSTGD+LR V+ G+ LG++ K M+AG LV DEL
Sbjct: 10 IFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDEL 69
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
++ LI + L E + DGFPRT+ QAE
Sbjct: 70 ILALIRDELAGMEPVR-VIFDGFPRTLAQAE 99
>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 99.4 bits (248), Expect = 4e-27
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+N ++ GP GSGKGTQ L KKY + H+ +G + R + G+ LGKK KE +D G LV
Sbjct: 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60
Query: 78 DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
D++ + +I L K + +NG+LLDGFPR QAEK++ + K
Sbjct: 61 DDITIPMILETL-KQDGKNGWLLDGFPRNKVQAEKLWEALQK 101
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 90.6 bits (225), Expect = 1e-23
Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+L G PG GKGT A + +KK + H++ G++LR E+ + + +GK++++ + +G LV D L
Sbjct: 10 VLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNL 69
Query: 81 VVDLISNNLDKP--ECQNGFLLDGFPRTVPQA 110
V+ ++ + + K +C GF+LDGFPR + Q
Sbjct: 70 VIAIVKDEIAKVTDDCFKGFILDGFPRNLKQC 101
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 87.0 bits (216), Expect = 9e-23
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 23 LGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVV 82
LG PGSGKGTQ + + HLS GD+LRAE+ SGS G+ ++ + GK+V E+ V
Sbjct: 5 LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV 64
Query: 83 DLISNNLDKPECQN-GFLLDGFPR 105
L+ N + + FL+DGFPR
Sbjct: 65 KLLKNAIQ--ADGSKKFLIDGFPR 86
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 87.2 bits (216), Expect = 2e-22
Identities = 34/91 (37%), Positives = 61/91 (67%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+ LGPPGSGKGT A + + + H+STGD+ R + + + LGK++K+ ++ G+LV D +
Sbjct: 4 VFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSI 63
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
+ ++ + ++ + + F+LDGFPR + QA+
Sbjct: 64 TIKIVEDKINTIKNNDNFILDGFPRNINQAK 94
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 79.1 bits (195), Expect = 2e-19
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA-EVSSGSNLGKKL---KETMDAGKLV 76
+LLG PG+GKGTQ+ A+++ V H++TGD LRA + S++ + E MDAG+LV
Sbjct: 7 LLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELV 66
Query: 77 SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
D +V +++ L + GF+LDG+PR + QAE
Sbjct: 67 PDAVVNEIVEEALSDAD---GFVLDGYPRNLEQAE 98
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 76.9 bits (189), Expect = 2e-18
Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
S E T +LG PGSGKGTQ + + HLS GD+LR E++S S G + T+
Sbjct: 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK 97
Query: 72 AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRT 106
GK+V E+ V LI ++ + N FL+DGFPRT
Sbjct: 98 EGKIVPSEVTVKLIQKEMESSD-NNKFLIDGFPRT 131
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 39.8 bits (94), Expect = 6e-05
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58
GP GSGK T A L AKK + +L TG + EV
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK 40
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 38.8 bits (90), Expect = 8e-05
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++ GPPGSGK T A A+K + +S D+LR E +D G+L ++
Sbjct: 3 LITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEG----------LAELDDGELDDIDI 52
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTV 107
++L+ LD + +++DG +
Sbjct: 53 DLELLEEILD-ELAKQEWVIDGVREST 78
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
GPPGSGK T A + A+K + +S GD+ R
Sbjct: 7 GPPGSGKTTVAKILAEKLSLKLISAGDIFR 36
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 37.9 bits (89), Expect = 4e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP GSGK T A + A+K +L TG M RA
Sbjct: 11 GPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 37.1 bits (87), Expect = 5e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
GPPGSGK T A L A+K + H+S G++ R
Sbjct: 7 GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 36.3 bits (85), Expect = 0.001
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
GP GSGKGT A + AKK +L TG M RA + + G + DE +
Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTGAMYRA-------VALAA---LRHGVDLEDEEALV 60
Query: 84 LISNNLD 90
++ +LD
Sbjct: 61 ALAAHLD 67
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
G PGSGK T A A+ + +S G + R
Sbjct: 7 GLPGSGKTTVARELAEHLGLKLVSAGTIFR 36
>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA. This
model represents the AAA family ATPase, EccA, of the
actinobacterial flavor of type VII secretion systems.
Species such as Mycobacterium tuberculosis have several
instances of this system per genome, designated EccA1,
EccA2, etc [Protein fate, Protein and peptide secretion
and trafficking].
Length = 557
Score = 36.0 bits (83), Expect = 0.002
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC 42
+ GPPG+GK T A + AK YC
Sbjct: 316 LFAGPPGTGKTTIARVVAKIYC 337
>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP G+GK T AKK + +L TG M RA
Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321
>gnl|CDD|234914 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 33.4 bits (77), Expect = 0.012
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG------SNLGK---KL--KET 69
++G PGSGKG + A++ + + GD++R EV N+GK L +
Sbjct: 5 GVVGMPGSGKG-EFSKIAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELG 63
Query: 70 MDA 72
MDA
Sbjct: 64 MDA 66
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 32.5 bits (75), Expect = 0.024
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKK 40
G N +L+G G+GK T L AK+
Sbjct: 4 GPNIVLIGFMGAGKSTIGRLLAKR 27
>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 32.3 bits (74), Expect = 0.043
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
+ IL GPPG GK T A + A + H S+ L A V +G K L+ +D K
Sbjct: 54 SLILYGPPGVGKTTLARIIA-NHTRAHFSS---LNA-VLAGV---KDLRAEVDRAK 101
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication,
recombination, and repair].
Length = 845
Score = 31.9 bits (73), Expect = 0.065
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 21 ILLGPPGSGKGTQAPLF 37
I++G GSGK TQ P F
Sbjct: 69 IIVGETGSGKTTQLPQF 85
>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 31.1 bits (71), Expect = 0.088
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDM---LRAEVSSGSNLGKKLKETM 70
N +LLGPPG GK A + C V T D+ L+ G L + L+
Sbjct: 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDLVEQLKRARGDGR-LARTLQRLA 107
Query: 71 DAGKLVSDEL 80
A L+ D++
Sbjct: 108 KADLLILDDI 117
>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional.
Length = 196
Score = 30.9 bits (70), Expect = 0.11
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 24 GPPGSGKGTQAPLFAKK---YCVCHLSTGDMLRA--EVSSGSNLGKK 65
G GSGK TQA L A+K + C + G + + E+ SGS K+
Sbjct: 9 GIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKE 55
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 30.9 bits (70), Expect = 0.12
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP G+GK T A A+K +L +G M RA
Sbjct: 9 GPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39
>gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional.
Length = 254
Score = 30.6 bits (69), Expect = 0.14
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 21/70 (30%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA-------EVSSGSNLGKKLKETMD 71
N + LGPPG+GK HL+ G +RA ++ + +L
Sbjct: 100 NVVFLGPPGTGK-------------THLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH 146
Query: 72 AGKLVSDELV 81
AG+L ELV
Sbjct: 147 AGRL-QAELV 155
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 30.3 bits (69), Expect = 0.18
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 19 NAILLGPPGSGKGTQAPLFAK 39
+ IL GPPG+GK T A L A
Sbjct: 50 SMILWGPPGTGKTTLARLIAG 70
>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 30.5 bits (69), Expect = 0.18
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
GP G GK + + A+ +L TG M RA G L + ++V++ +
Sbjct: 8 GPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAV 64
>gnl|CDD|226372 COG3854, SpoIIIAA, ncharacterized protein conserved in bacteria
[Function unknown].
Length = 308
Score = 29.8 bits (67), Expect = 0.27
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 5 AYPLPKESHESTGVNAILLGPPGSGKGT 32
A PL K+ +++ +N +++GPP GK T
Sbjct: 125 ANPLIKDLYQNGWLNTLIIGPPQVGKTT 152
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal.
Members of this protein are L-seryl-tRNA(Sec) kinase.
This enzyme is part of a two-step pathway in Eukaryota
and Archaea for performing selenocysteine biosynthesis
by changing serine misacylated on selenocysteine-tRNA
to selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents archaeal proteins with
this activity [Protein synthesis, tRNA aminoacylation].
Length = 249
Score = 29.8 bits (67), Expect = 0.29
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLR 53
IL G PG GK T + AKK V L T D++R
Sbjct: 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIR 39
>gnl|CDD|199870 cd06250, M14_PaAOTO_like, Peptidase M14 Succinylglutamate
desuccinylase (ASTE)/aspartoacylase (ASPA)-like
subfamily; subgroup includes Pseudomonas aeruginosa
AotO. An uncharacterized subgroup of the
Succinylglutamate desuccinylase (ASTE)/aspartoacylase
(ASPA) subfamily which is part of the the M14 family of
metallocarboxypeptidases. This subgroup includes
Pseudomonas aeruginosa AotO and related proteins. ASTE
catalyzes the fifth and last step in arginine catabolism
by the arginine succinyltransferase pathway, and
aspartoacylase (ASPA, also known as aminoacylase 2, and
ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid
(NAA) into aspartate and acetate. NAA is abundant in the
brain, and hydrolysis of NAA by ASPA may help maintain
white matter. ASPA is an NAA scavenger in other tissues.
Mutations in the gene encoding ASPA cause Canavan
disease (CD), a fatal progressive neurodegenerative
disorder involving dysmyelination and spongiform
degeneration of white matter in children. This enzyme
binds zinc which is necessary for activity. Measurement
of elevated NAA levels in urine is used in the diagnosis
of CD. The gene encoding P. aeruginosa AotO was
characterized as part of an operon encoding an arginine
and ornithine transport system, however it is not
essential for arginine and ornithine uptake.
Length = 359
Score = 29.5 bits (67), Expect = 0.31
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 20/98 (20%)
Query: 31 GTQAPLFAKKYCVCHLSTGDMLRAE----VSSGSNLGKKLKETMDAGKLVSDELVVDLIS 86
G APL + L+ +ML A V + G ++ AG +L+ +++
Sbjct: 271 GDAAPLPPLRRPATPLAGYEMLYAPAGGLVVYRAAPGDWVE----AG-----DLLAEILD 321
Query: 87 NNLDKPEC------QNGFLLDGFP-RTVPQAEKVYSLM 117
D Q+G L F R+V +++ +
Sbjct: 322 PLGDGSGTTAVRAPQDGVLFARFARRSVRAGDELAKIA 359
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 28.1 bits (63), Expect = 0.31
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 21 ILL-GPPGSGKGTQAPLFAKKYC---VCHLSTG 49
I + G GSGK T A A++ V L
Sbjct: 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEI 34
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain
only a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 28.8 bits (65), Expect = 0.38
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC----VCHLSTGDMLRAEV 56
+++G PGSGK T FA++ LS+ D LR +
Sbjct: 3 LMVGLPGSGKST----FARRLLRELGAVVLSS-DTLRKRL 37
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 29.4 bits (67), Expect = 0.38
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 15 STGVNAILLGPPGSGKGT 32
S +N ++ GPPG+GK T
Sbjct: 53 SRPLNVLIYGPPGTGKTT 70
>gnl|CDD|216936 pfam02223, Thymidylate_kin, Thymidylate kinase.
Length = 186
Score = 29.2 bits (66), Expect = 0.41
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
G G+GK TQA L ++ + +L E G+ +G+K++E
Sbjct: 3 GLDGAGKTTQAELLKERLKEQGIKV--VLTRE-PGGTPIGEKIRE 44
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 135
Score = 28.8 bits (65), Expect = 0.45
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC 42
+L+GPPG+GK A A
Sbjct: 3 LLVGPPGTGKSELAERLAAALS 24
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 28.5 bits (64), Expect = 0.54
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY 41
+ +L P GSGK A L +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILEL 24
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 28.5 bits (64), Expect = 0.77
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLF 37
N I+ GP G+GK T F
Sbjct: 38 RGERPSNIIIYGPTGTGK-TATVKF 61
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 28.2 bits (63), Expect = 0.78
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY 41
+ IL P GSGK A L A +
Sbjct: 26 DVILAAPTGSGKTLAALLPALEA 48
>gnl|CDD|224637 COG1723, COG1723, Uncharacterized conserved protein [Function
unknown].
Length = 331
Score = 28.1 bits (63), Expect = 1.0
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 54 AEVSSGSNLGKKLKETMDA-GKLVSDELVVDLISNNLDKPE 93
E++ + KE + GKL + ++L S+ LD PE
Sbjct: 210 QELARTGKVSLSRKEILKQIGKLFLLRVSINLHSDILDTPE 250
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.5 bits (62), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
N +L+G G+GK T L AK
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKA 22
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo
and salvage pathways of DTTP synthesis. Catalytic
activity: ATP + thymidine 5'-phosphate = ADP +
thymidine 5'-diphosphate [Purines, pyrimidines,
nucleosides, and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 27.7 bits (62), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
G G+GK TQA L K + D+L G+ +G+K++E
Sbjct: 10 GIDGAGKTTQANLLKKL---LQENGYDVLFTREPGGTPIGEKIRE 51
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a
wide variety of presumed phage proteins.
Length = 201
Score = 28.0 bits (63), Expect = 1.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 15 STGVNAILLGPPGSGKGTQA------PLF 37
+ + ++ GPPG GK + A LF
Sbjct: 1 TKNIKVLIYGPPGIGKTSLAKTLPPKTLF 29
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 27.7 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 NAILLGPPGSGKGTQAPLFAK 39
+ IL GPPG+GK T A + A
Sbjct: 38 SMILWGPPGTGKTTLARIIAG 58
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 27.5 bits (61), Expect = 1.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 16 TGVNAILLGPPGSGK 30
N +L GPPG+GK
Sbjct: 18 PPKNLLLYGPPGTGK 32
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 27.0 bits (59), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 16 TGVNAILLGPPGSGKGTQAPLFAKKY 41
G +++GPPGSGK T A A++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALAREL 26
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 27.5 bits (61), Expect = 1.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 17 GVNAILLGPPGSGK 30
G N +L GPPGSGK
Sbjct: 211 GHNLLLFGPPGSGK 224
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyzes the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 27.1 bits (61), Expect = 2.0
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 19 NAILLGPPGSGK 30
N +++GPPGSGK
Sbjct: 24 NLLMIGPPGSGK 35
>gnl|CDD|234053 TIGR02903, spore_lon_C, ATP-dependent protease, Lon family.
Members of this protein family resemble the widely
distributed ATP-dependent protease La, also called Lon
and LonA. It resembles even more closely LonB, which is
a LonA paralog found in genomes if and only if the
species is capable of endospore formation (as in
Bacillus subtilis, Clostridium tetani, and select other
members of the Firmicutes) and expressed specifically in
the forespore compartment. Members of this family are
restricted to a subset of spore-forming species, and are
very likely to participate in the program of endospore
formation. We propose the designation LonC [Protein
fate, Degradation of proteins, peptides, and
glycopeptides, Cellular processes, Sporulation and
germination].
Length = 615
Score = 27.5 bits (61), Expect = 2.1
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPL 36
+A +A P P+ + IL GPPG GK T A L
Sbjct: 167 LAKVASPFPQ--------HIILYGPPGVGKTTAARL 194
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 26.8 bits (60), Expect = 2.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 19 NAILLGPPGSGKGTQAPLFAK 39
N +L+G G+GK T AK
Sbjct: 4 NIVLIGFMGAGKSTIGRALAK 24
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 27.4 bits (61), Expect = 2.1
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
N +++GP GSGK T K + L+ G +
Sbjct: 3 NMLIVGPSGSGKST----LLKLLALRLLARGGRVIV 34
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 26.6 bits (59), Expect = 2.3
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 17/103 (16%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++ G PGSGK T A A++ GD+LR L +L E + DE
Sbjct: 2 LITGTPGSGKTTLAKELAER-------LGDVLRDLAKEN-GLVLELDEEITDESKRLDED 53
Query: 81 VVD-----LISNNLDKPECQN----GFLLDGFPRTVPQAEKVY 114
+ L + E +N G L + V
Sbjct: 54 KLAKLLDKLEKIIEELAEGENVIIDGHLAELELERFKDLVFVV 96
>gnl|CDD|234175 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems [Cellular
processes, Pathogenesis].
Length = 1169
Score = 27.3 bits (61), Expect = 2.5
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 21 ILLGPPGSGKGT 32
+++GPPGSGK T
Sbjct: 115 LVIGPPGSGKTT 126
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB. This
model represents HrpB, one of two related but
uncharacterized DEAH-box ATP-dependent helicases in
many Proteobacteria, but also in a few species of other
lineages. The member from Rhizobium meliloti has been
designated HelO. HrpB is typically about 800 residues
in length, while its paralog HrpA (TIGR01967), also
uncharacterized, is about 1300 amino acids long.
Related characterized eukarotic proteins are RNA
helicases associated with pre-mRNA processing [Unknown
function, Enzymes of unknown specificity].
Length = 819
Score = 27.0 bits (60), Expect = 2.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 21 ILLGPPGSGKGTQAPL 36
+L PPG+GK T PL
Sbjct: 21 VLEAPPGAGKSTAVPL 36
>gnl|CDD|222856 PHA02530, pseT, polynucleotide kinase; Provisional.
Length = 300
Score = 26.5 bits (59), Expect = 3.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 24 GPPGSGKGTQAPLFAKK 40
G PGSGK T A FA K
Sbjct: 9 GVPGSGKSTWAREFAAK 25
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 26.6 bits (59), Expect = 3.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 19 NAILLGPPGSGKGT 32
N IL GPPG+GK T
Sbjct: 36 NLILSGPPGTGKTT 49
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 26.8 bits (60), Expect = 3.2
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 20 AILL-GPPGSGKGTQAPLFAKKY 41
A+LL GPPG GK + A A Y
Sbjct: 41 ALLLYGPPGVGKTSLAHALANDY 63
>gnl|CDD|222065 pfam13352, DUF4100, Protein of unknown function (DUF4100). This
is a family of uncharacterized proteins found in
Physcomitrella.
Length = 212
Score = 26.5 bits (58), Expect = 3.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 49 GDMLRAEVS-------SGSNLGKKLKETMDAGKLVSDELVVDL 84
GD R S + ++L +K KET D GK ++ +L+ D+
Sbjct: 35 GDKAREAASQELPVKDTSASLEEKTKETKDKGKSIAYKLLSDI 77
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 26.1 bits (58), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 20 AILL-GPPGSGKGTQAPLFAKKY 41
A+LL G PG+GK A ++
Sbjct: 14 AVLLGGQPGAGKTELARALLEEL 36
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 26.1 bits (58), Expect = 4.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 22 LLGPPGSGKGTQAPLFAKK-YCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
L G GSGK T A + A+ + V + D+ R V G +++ E
Sbjct: 7 LTGGIGSGKSTVAKILAELGFPV--IDADDVAREVVEPGGEALQEIAE 52
>gnl|CDD|177297 PHA00729, PHA00729, NTP-binding motif containing protein.
Length = 226
Score = 26.3 bits (58), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 LAYPLPKESHESTGVNAILLGPPGSGKGTQA 34
LA + + + V+A++ G GSGK T A
Sbjct: 4 LAKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 26.4 bits (59), Expect = 4.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 66 LKETMDAGKLVSDELVVD 83
L ET+D GK +SD L VD
Sbjct: 70 LLETLDMGKPISDALAVD 87
>gnl|CDD|219839 pfam08433, KTI12, Chromatin associated protein KTI12. This is a
family of chromatin associated proteins which interact
with the Elongator complex, a component of the
elongating form of RNA polymerase II. The Elongator
complex has histone acetyltransferase activity.
Length = 266
Score = 26.1 bits (58), Expect = 5.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 21 ILLGPPGSGKGTQAPLFAK-----KYCVCHLSTGDML 52
IL G P SGK T+A AK Y V +S +
Sbjct: 3 ILTGLPSSGKSTRAKELAKYLEEKGYDVIVISDESLG 39
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 26.1 bits (58), Expect = 5.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 22 LLGPPGSGKGTQAPLFA 38
L+GP GSGK T L
Sbjct: 35 LIGPNGSGKSTLLKLLN 51
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.3 bits (58), Expect = 5.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 20 AILLGPPGSGKGT 32
+LLGPP SGK T
Sbjct: 194 TLLLGPPSSGKTT 206
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 25.6 bits (57), Expect = 5.5
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 21 ILLGPPGSGKGTQAPLFAK--KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS- 77
+L GPPG+GK T A AK +S +++ V K+L+E +A K ++
Sbjct: 2 LLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESE---KRLRELFEAAKKLAP 58
Query: 78 -----DEL 80
DE+
Sbjct: 59 CVIFIDEI 66
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 25.7 bits (57), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Query: 21 ILLGPPGSGKGTQAPLFAKK 40
IL+G GSGK T A++
Sbjct: 5 ILIGSGGSGKST----LARQ 20
>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus. This family consists of the
C-terminal region of several eukaryotic and archaeal
RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin
or TIP49b) proteins. The N-terminal domain contains the
pfam00004 domain. In zebrafish, the liebeskummer (lik)
mutation, causes development of hyperplastic embryonic
hearts. lik encodes Reptin, a component of a
DNA-stimulated ATPase complex. Beta-catenin and Pontin,
a DNA-stimulated ATPase that is often part of complexes
with Reptin, are in the same genetic pathways. The
Reptin/Pontin ratio serves to regulate heart growth
during development, at least in part via the
beta-catenin pathway. TBP-interacting protein 49 (TIP49)
was originally identified as a TBP-binding protein, and
two related proteins are encoded by individual genes,
tip49a and b. Although the function of this gene family
has not been elucidated, they are supposed to play a
critical role in nuclear events because they interact
with various kinds of nuclear factors and have DNA
helicase activities.TIP49a has been suggested to act as
an autoantigen in some patients with autoimmune
diseases.
Length = 395
Score = 26.1 bits (58), Expect = 5.7
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 20 AILL-GPPGSGKGTQAPLFAK----KYCVCHLSTGDMLRAEVSSGSNL--------GKKL 66
A+L+ GPPG+GK A +K C +S ++ E+ L G ++
Sbjct: 52 AVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAIGVRI 111
Query: 67 KETMDAGKLVSDELVVDLISNNLDKP 92
KE K V + VV+L + P
Sbjct: 112 KEE----KEVYEGEVVELEIEEAENP 133
>gnl|CDD|185766 cd09243, BRO1_Brox_like, Protein-interacting Bro1-like domain of
human Brox1 and related proteins. This family contains
the Bro1-like domain of a single-domain protein, human
Brox, and related domains. It belongs to the
BRO1_Alix_like superfamily which also includes the
Bro1-like domains of mammalian Alix (apoptosis-linked
gene-2 interacting protein X), His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1
and Rim20 (also known as PalA) from Saccharomyces
cerevisiae, Ustilago maydis Rim23 (also known as PalC),
and related domains. Alix, HD-PTP, Brox, Bro1, Rim20,
and Rim23, interact with the ESCRT (Endosomal Sorting
Complexes Required for Transport) system. Bro1-like
domains are boomerang-shaped, and part of the domain is
a tetratricopeptide repeat (TPR)-like structure.
Bro1-like domains bind components of the ESCRT-III
complex: CHMP4 in the case of Brox. Human Brox can bind
to human immunodeficiency virus type 1 (HIV-1)
nucleocapsid. In addition to a Bro1-like domain, Brox
also has a C-terminal thioester-linkage site for
isoprenoid lipids (CaaX motif). This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 353
Score = 26.1 bits (58), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 84 LISNNLDKPECQNGFLL-DGFPRTVPQAEK 112
L+ L+K E +NGF+ P VPQ E
Sbjct: 312 LVKRTLEKCERENGFIYHQKVPDEVPQLEL 341
>gnl|CDD|226573 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 261
Score = 26.0 bits (57), Expect = 6.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 21 ILLGPPGSGKGTQAPLFAK 39
IL G PGSGK T A AK
Sbjct: 5 ILTGYPGSGKTTFAKELAK 23
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 25.7 bits (57), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 64 KKLKETMDAGKLVSDELVVDLISNNLDKPE 93
+K+ E + AGKL +++ +LIS++L
Sbjct: 155 RKIAEDVAAGKLSPEDIDEELISSHLYTSG 184
>gnl|CDD|136670 PRK08181, PRK08181, transposase; Validated.
Length = 269
Score = 25.7 bits (56), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 17 GVNAILLGPPGSGK 30
G N +L GPPG GK
Sbjct: 106 GANLLLFGPPGGGK 119
>gnl|CDD|224260 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 25.8 bits (57), Expect = 7.3
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 9 PKESHESTGVNAILLGPPGSGKGTQAPLFAKK 40
ES GV +++GP SGK T A K
Sbjct: 66 KSESAGKVGV-VMVVGPVDSGKSTLTTYLANK 96
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 25.8 bits (56), Expect = 7.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
L GP GSGK + L A + L+TG RA
Sbjct: 39 LDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 25.3 bits (56), Expect = 7.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 24 GPPGSGKGT 32
GPPG+GK T
Sbjct: 40 GPPGAGKST 48
>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction
only].
Length = 168
Score = 25.5 bits (56), Expect = 7.9
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 13/67 (19%)
Query: 21 ILLGPPGSGKGTQAP-LFAKKYCVCHLSTGDMLRAEVSSGSNLGKK-----------LKE 68
+L G GSGK T A F + Y V L +L +S N K L++
Sbjct: 6 VLRGASGSGKSTFAKENFLQNY-VLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQ 64
Query: 69 TMDAGKL 75
+ GK
Sbjct: 65 RLRRGKF 71
>gnl|CDD|213965 TIGR04352, HprK_rel_A, HprK-related kinase A. A number of protein
families resemble HPr kinase (see TIGR00679) but do not
belong to that system. They include this family, which
appears instead to be the marker for a different type of
gene neighborhood, in which one of the conserved
neighboring proteins resembles (but is distinct from)
PqqD.
Length = 280
Score = 25.3 bits (56), Expect = 8.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 14 ESTGVNAILLGPPGSGKGT 32
E G IL PPGSGK T
Sbjct: 105 ERDGRALILPAPPGSGKST 123
>gnl|CDD|225797 COG3258, COG3258, Cytochrome c [Energy production and conversion].
Length = 293
Score = 25.2 bits (55), Expect = 9.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 9 PKESHESTGVNAI--LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
G + L +G L+A++ CH + G L+ + G+
Sbjct: 141 VGVKLPGRGYPKVAPPLKAADPVRG--KKLYAEQCAACHGADGQGLKNDDEQGA 192
>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2;
Reviewed.
Length = 337
Score = 25.3 bits (56), Expect = 9.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 19 NAILLGPPGSGKGTQAPLFAK 39
+ ++ GPPGSGK A+
Sbjct: 38 HLLVQGPPGSGKTAAVRALAR 58
>gnl|CDD|227844 COG5557, COG5557, Polysulphide reductase [Energy production and
conversion].
Length = 401
Score = 25.2 bits (55), Expect = 9.7
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 1 MAPLAYPLPKESHESTG-VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG 49
+A LA PL H TG ++A P APLF + +G
Sbjct: 171 IAALALPLAVLHHSVTGWISATQKSRPLWQSYLMAPLF----IATAIISG 216
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 24.8 bits (55), Expect = 9.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 21 ILLGPPGSGKGT 32
+L GP G GK T
Sbjct: 3 VLSGPSGVGKST 14
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,883,674
Number of extensions: 488809
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 116
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)