RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9244
(119 letters)
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 187 bits (477), Expect = 9e-62
Identities = 78/118 (66%), Positives = 89/118 (75%)
Query: 2 APLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSN 61
AP GV A+LLGPPG+GKGTQAP AK +CVCHL+TGDMLRA V+SGS
Sbjct: 1 APNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE 60
Query: 62 LGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
LGKKLK TMDAGKLVSDE+V++LI NL+ P C+NGFLLDGFPRTV QAE + LM K
Sbjct: 61 LGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 118
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 186 bits (474), Expect = 1e-61
Identities = 46/101 (45%), Positives = 67/101 (66%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L+G PG+GKGTQ +KY + H+STGDM RA + + LG + K +D G+LV D
Sbjct: 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
E+ + ++ L K +C+ GFLLDGFPRTV QAE + ++ +
Sbjct: 62 EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE 102
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 186 bits (474), Expect = 2e-61
Identities = 52/101 (51%), Positives = 69/101 (68%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L+G PG+GKGTQA +KY + H+STGDM RA + +G+ LG K K MD G LV D
Sbjct: 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
E+ + ++ L K +CQ GFLLDGFPRTV QA+ + SL+
Sbjct: 62 EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTD 102
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 186 bits (474), Expect = 3e-61
Identities = 49/102 (48%), Positives = 66/102 (64%)
Query: 11 ESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
H + ILLG PG+GKGTQA +K+ + +STGDMLRA V +G+ LG + K M
Sbjct: 2 AHHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYM 61
Query: 71 DAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
D GKLV D L++ L+ L + +C NG+L DGFPRT+ QA+
Sbjct: 62 DEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADA 103
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 185 bits (472), Expect = 3e-61
Identities = 56/94 (59%), Positives = 71/94 (75%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
ILLG P +GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+D
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
ELV+ L+ + + +C+NGFLLDGFPRT+PQA+
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADA 95
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 184 bits (469), Expect = 6e-61
Identities = 42/106 (39%), Positives = 69/106 (65%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
+ + +LLGPPG+GKGTQA A+K + +STG++ R + G+ LG + K +D
Sbjct: 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD 74
Query: 72 AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
AG LV +L +L+ + L+ P+ NGF+LDG+PR+V QA+ ++ ++
Sbjct: 75 AGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEML 120
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 184 bits (470), Expect = 7e-61
Identities = 49/106 (46%), Positives = 69/106 (65%)
Query: 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG 73
S N IL+G PGSGKGTQ K+Y + HLSTGDMLR + +G+ +G + K +++G
Sbjct: 2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESG 61
Query: 74 KLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
V DE+V+ L+ D C NGF+LDGFPRT+PQAE + ++ +
Sbjct: 62 NFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSE 107
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 183 bits (468), Expect = 3e-60
Identities = 49/108 (45%), Positives = 66/108 (61%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
I LG PGSGKGTQ+ K +C CHLSTGD+LR + LG K+K ++
Sbjct: 24 CLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIIN 83
Query: 72 AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
GKLV D++V+ L+ L P+C+ GF+LDG+PR V QAE + L+ K
Sbjct: 84 EGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQK 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 181 bits (462), Expect = 1e-59
Identities = 52/106 (49%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
S + +L+GPPG+GKGTQAP +++ HL+TGDMLR++++ G+ LG + K+ MD G
Sbjct: 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75 LVSDELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLMMK 119
LVSD+++V++I + L P C+NGF+LDGFPRT+PQAEK+ ++ +
Sbjct: 62 LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKE 107
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 180 bits (460), Expect = 2e-59
Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 1/99 (1%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
+ + ++ G P SGKGTQ L KY + H+S GD+LRAE+++GS GK+ KE M+ G+
Sbjct: 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 62
Query: 75 LVSDELVVDLISNNLDKPEC-QNGFLLDGFPRTVPQAEK 112
LV DE+VV+++ L +P+ +NG+LLDG+PR+ QA
Sbjct: 63 LVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMA 101
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 178 bits (454), Expect = 2e-58
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N ++ GP GSGKGTQ L KY + H+ +G + R + G+ LGKK KE +D G LV D
Sbjct: 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
++ + ++ L + + ++G+LLDGFPR QA+K++ + +
Sbjct: 62 DITIPMVLETL-ESKGKDGWLLDGFPRNTVQAQKLFEALQE 101
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 177 bits (451), Expect = 1e-57
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 7 PLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL 66
L +S S + A++LGPPGSGKGT A+ + + HLS+G LR + + + +G+
Sbjct: 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMA 76
Query: 67 KETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
K+ ++ LV D ++ L+ + L+ +LLDGFPRT+ QAE
Sbjct: 77 KQYIEKSLLVPDHVITRLMMSELENRRG-QHWLLDGFPRTLGQAEA 121
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 173 bits (442), Expect = 8e-57
Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 3/101 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
+ LGPPG+GKGTQA AK+ H+STGD+LR V G+ LGKK KE M+ G+LV D
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
+L++ LI K + DGFPRTV QAE + ++ K
Sbjct: 62 DLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEK 99
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 173 bits (440), Expect = 3e-56
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
+ + A+++G PGSGKGT + + + HLS+GD+LR + G+ +G K +D
Sbjct: 2 GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61
Query: 72 AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
GKL+ D+++ L + L K Q +LLDGFPRT+PQAE
Sbjct: 62 QGKLIPDDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAEA 101
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 162 bits (413), Expect = 1e-52
Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++G PGSGKGTQ +KY HLSTGD+LR+EVSSGS GKKL E M+ G+LV E
Sbjct: 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72
Query: 81 VVDLISNNL-DKPECQNGFLLDGFPRTVPQAE 111
V+D++ + + K GFL+DG+PR V Q E
Sbjct: 73 VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGE 104
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 162 bits (413), Expect = 2e-52
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
++G PGSGKGTQ +KY HLSTG++LR E++S S K +++ M+ G LV
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73
Query: 79 ELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAE 111
+V++L+ + GFL+DG+PR V Q E
Sbjct: 74 GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGE 107
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 161 bits (409), Expect = 6e-52
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 5/97 (5%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
G I LGPPG+GKGTQA A++ LSTGD+LR V+ G+ LG++++ M+ G
Sbjct: 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGD 61
Query: 75 LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
LV D+L+++LI L + DGFPRT+ QAE
Sbjct: 62 LVPDDLILELIREEL-----AERVIFDGFPRTLAQAE 93
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 158 bits (403), Expect = 5e-51
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+LG PGSGKGTQ + + HLS GD+LR E SGS G+ + + G++V +
Sbjct: 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
V L+ N +D + FL+DGFPR M
Sbjct: 70 TVKLLKNAIDANQG-KNFLVDGFPRNEENNNSWEENM 105
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 153 bits (388), Expect = 1e-48
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLKETMDAGKLV 76
+ +LG PG+GKGTQ +KY HLS G++LR E + S G+ +++ + GK+V
Sbjct: 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 63
Query: 77 SDELVVDLISNNLDKPEC----QNGFLLDGFPRTVPQAEK 112
E+ + L+ +D+ +N FL+DGFPR +
Sbjct: 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQG 103
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 152 bits (387), Expect = 2e-48
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDE 79
+LG PG+GKGTQ K Y HLS GD+LRAE +GS G+ +K + G++V E
Sbjct: 19 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78
Query: 80 LVVDLISNNLDKPE--CQNGFLLDGFPRTVPQAEKVYSLMMK 119
+ + L+ N + ++ FL+DGFPR + QA +++
Sbjct: 79 ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVE 120
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 87.7 bits (217), Expect = 4e-23
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
I+ GP G GK T A + GD++ V G + E + L +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTWKNI 62
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
++ L + + ++ FP +
Sbjct: 63 TDLTVNFLLAQNDVVLDYIA--FPDEAEALAQ 92
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 73.7 bits (181), Expect = 8e-18
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GKLVSDE 79
++ G PGSGK A L K+ + D++R S + G++L + ++ D
Sbjct: 5 LITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDG 63
Query: 80 LVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
+V L L + DG R++ + E
Sbjct: 64 VVARLCVEELGTSNHDL-VVFDGV-RSLAEVE 93
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 46.6 bits (110), Expect = 1e-07
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L G PG GK T A K + +++ GD+ R ++L + D +
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE---------EQLYDGYDE-EYDCP 62
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKV 113
L D + + LD + G ++D
Sbjct: 63 ILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWF 97
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 41.6 bits (97), Expect = 8e-06
Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 14 ESTGVNAILLGPPGSGKGTQAPLFAKK-YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA 72
+ G+N ++ G PG+GK + A + A + HL G +++ + + +D
Sbjct: 7 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-----HFYTEYDTELDT 61
Query: 73 GKLVSDELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKV 113
+ +E D + + ++ + ++D +
Sbjct: 62 --HIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWF 101
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 39.7 bits (92), Expect = 5e-05
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 21 ILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSG 59
+L G PGSGK T A A H D L + G
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHG 52
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 35.1 bits (80), Expect = 0.003
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 28/85 (32%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVSSGSNLG------------ 63
+ +G PGSGK T +A+++ +++ D R + +
Sbjct: 6 LTIGCPGSGKST----WAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIV 60
Query: 64 -----KKLKETMDAGKLVSDELVVD 83
K + G V +++
Sbjct: 61 TGMQFDTAKSILYGGDSVKG-VIIS 84
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 34.7 bits (81), Expect = 0.003
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP SGK + A A V +LS+G + RA
Sbjct: 9 GPSASGKSSVARRVAAALGVPYLSSGLLYRA 39
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4;
2.30A {Staphylococcus aureus}
Length = 219
Score = 34.0 bits (79), Expect = 0.005
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP +GK T A A + + ++ TG M RA
Sbjct: 10 GPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP
binding motif, ATP- binding, nucleotide-binding,
transferase; HET: ADP; 1.79A {Methanocaldococcus
jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A*
3adb_A*
Length = 260
Score = 33.3 bits (76), Expect = 0.009
Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 20/85 (23%)
Query: 21 ILLGPPGSGKGT-----QAPLFAKKYCVCHLSTGDMLRAE--VSSGSN------LGKKLK 67
IL G PG GK T L V L D++R V +L
Sbjct: 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG-SDLIRESFPVWKEKYEEFIKKSTYRLI 66
Query: 68 ETMDAGKLVSDELVVDLISNNLDKP 92
++ V +VD N
Sbjct: 67 DSALKNYWV----IVD--DTNYYNS 85
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 33.2 bits (77), Expect = 0.010
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP G+GKGT A+ L +G + R
Sbjct: 12 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42
>3r20_A Cytidylate kinase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, ADP,
DCMP, D transferase; 2.00A {Mycobacterium smegmatis}
PDB: 3r8c_A 4die_A*
Length = 233
Score = 33.2 bits (77), Expect = 0.011
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP G+GK + + A+ +L TG M R
Sbjct: 16 GPAGTGKSSVSRGLARALGARYLDTGAMYRI 46
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 32.8 bits (75), Expect = 0.011
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEV 56
+ +G PGSGK T +A+++ +++ D R +
Sbjct: 6 LTIGCPGSGKST----WAREFIAKNPGFYNINR-DDYRQSI 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 33.1 bits (75), Expect = 0.011
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
+++G GSGK T A A + + S N+ M G ++DE
Sbjct: 33 VVMGVSGSGKTTIAHGVADETGLEFAEADAFH-----SPENIAT-----MQRGIPLTDE 81
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 32.8 bits (76), Expect = 0.012
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
GP SGK T A + AK + +L TG M RA
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.70A
{Chloroflexus aurantiacus}
Length = 193
Score = 32.6 bits (74), Expect = 0.017
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
I+ G P +GK T + A + LS
Sbjct: 9 IVTGHPATGKTTLSQALATGLRLPLLSKDAFKEV 42
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A
Length = 431
Score = 32.5 bits (74), Expect = 0.022
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 20 AILLGPPGSGKGTQAPLF 37
+L PG+GK +
Sbjct: 5 TVLDLHPGAGKTRRVLPQ 22
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.0 bits (73), Expect = 0.027
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
IL GP K T A +K+ + G S L + + D ++ D
Sbjct: 5 ILEGPDCCFKSTVAAKLSKELKYPIIK-GSSFELAKSGNEKLFEHFNKLADEDNVIIDRF 63
Query: 81 V 81
V
Sbjct: 64 V 64
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 32.1 bits (73), Expect = 0.029
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 15 STGVNAILLGPPGSGKGTQAPLF 37
G+ +L PG+GK +
Sbjct: 6 KKGMTTVLDFHPGAGKTRRFLPQ 28
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 32.1 bits (73), Expect = 0.031
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 20 AILLGPPGSGKGTQAPLF 37
+L PGSGK +
Sbjct: 24 TVLDLHPGSGKTRKILPQ 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.031
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 33/111 (29%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD------- 71
N ++ G GSGK + + +V K++ MD
Sbjct: 152 NVLIDGVLGSGK----------------TW---VALDVCL----SYKVQCKMDFKIFWLN 188
Query: 72 AGKLVSDELVVDLISN---NLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
S E V++++ +D + + ++K
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 31.4 bits (72), Expect = 0.043
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
N + +G GSGK T A AK
Sbjct: 6 NIVFIGFMGSGKSTLARALAKD 27
>2jlq_A Serine protease subunit NS3; ribonucleoprotein,
nucleotide-binding, viral nucleoprotein, endoplasmic
reticulum, helicase, hydrolase; 1.67A {Dengue virus 4}
PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A*
2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Length = 451
Score = 31.7 bits (72), Expect = 0.043
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 19 NAILLGPPGSGKGTQAPLF 37
I+ PG+GK +
Sbjct: 21 LTIMDLHPGAGKTKRILPS 39
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A*
3mrs_A 3n2e_A*
Length = 168
Score = 31.0 bits (71), Expect = 0.053
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+ +L+G GSGK + A
Sbjct: 9 HLVLIGFMGSGKSSLAQELGLA 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 30.7 bits (69), Expect = 0.082
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAK----KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA 72
G +L GPPG+GK A A+ K C + ++ E+ L + + +
Sbjct: 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGL 122
Query: 73 GKLVSDELVVDLI 85
+ E+ +
Sbjct: 123 RIKETKEVYEGEV 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.087
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 64/140 (45%)
Query: 11 ESHESTGVNAILLGPPG-------SGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLG 63
+E+ ++ PP + +G +P+ + + +L+ + +V
Sbjct: 309 RCYEAYPNTSL---PPSILEDSLENNEGVPSPMLS----ISNLT-----QEQVQ------ 350
Query: 64 KKLKET---MDAGKLVS-------DELVV-----DLIS-----------NNLD------- 90
+ +T + AGK V LVV L + LD
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 91 --KPECQNGFLLDGFPRTVP 108
K + N FL P P
Sbjct: 411 ERKLKFSNRFL----PVASP 426
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 30.5 bits (68), Expect = 0.11
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYC---------VCHLSTGDMLRAEVSSGSNL 62
+HE+ ++ G PG+GK T A A + ++ D++ + +
Sbjct: 62 AHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPK 121
Query: 63 GKKLKETMDAGKLVSDEL 80
K++ + G L DE
Sbjct: 122 TKEVLKRAMGGVLFIDEA 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.9 bits (67), Expect = 0.18
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY 41
A+L GPPG GK T A L A++
Sbjct: 79 AAMLYGPPGIGKTTAAHLVAQEL 101
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 29.5 bits (65), Expect = 0.21
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAEVSSGSNLGKKLKETM------DAG 73
+L G G+GK T + K++ + GD R++ L ++ + AG
Sbjct: 36 LLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAG 95
Query: 74 KLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
K+V + LV L S + L++G RTV +K L+
Sbjct: 96 KMV-ESLVTKLSSLGYN-------LLIEGTLRTVDVPKKTAQLLKN 133
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 29.3 bits (65), Expect = 0.24
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
GSG A++ + + A S +G++ DE +
Sbjct: 21 REYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA--VGEQFFRLA-------DEKAGN 71
Query: 84 LISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
+ L + + E ++ +
Sbjct: 72 NLLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSE 107
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 29.0 bits (66), Expect = 0.28
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 21 ILLGPPGSGKGTQAPLFAK 39
IL GPPG+GK T A + A+
Sbjct: 54 ILWGPPGTGKTTLAEVIAR 72
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 29.1 bits (64), Expect = 0.29
Identities = 9/62 (14%), Positives = 18/62 (29%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81
L G SGK T A Y ++ ++ + + + + +
Sbjct: 6 LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGID 65
Query: 82 VD 83
D
Sbjct: 66 YD 67
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 28.9 bits (64), Expect = 0.32
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
+++G GSGK + A+ + + E M G ++D+
Sbjct: 22 VVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDD 70
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 28.7 bits (63), Expect = 0.47
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 3 PLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL 62
PL P + +G PG+GK T H++ D L +
Sbjct: 244 PLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR-DTLGSW----QRC 298
Query: 63 GKKLKETMDAGKLVSDELVVD 83
+ + GK V V+D
Sbjct: 299 VSSCQAALRQGKRV----VID 315
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.4 bits (63), Expect = 0.52
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD 50
N +L PG+GK AK + G
Sbjct: 37 NWTILAKPGAGKSF----TAKMLLLREYMQGS 64
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 27.9 bits (63), Expect = 0.56
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
A+L+G PGSGK T AK
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKA 25
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 0.57
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 13/90 (14%)
Query: 21 ILLGPPGSGKGT-----QAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GK 74
++ G PG G T L + +S G ++ L D K
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE-----NLVSDRDQMRK 61
Query: 75 LVSDELVVDLIS--NNLDKPECQNGFLLDG 102
+ + + + ++ +D
Sbjct: 62 MDPETQKRIQKMAGRKIAEMAKESPVAVDT 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 27.7 bits (62), Expect = 0.66
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 14 ESTGVNAILLGPPGSGKGT-------QAPLFAKKYCVCHLSTGDM---LRAEVSSGSNLG 63
G +G PG GK T +A K T D+ L+ + G
Sbjct: 35 PEEGKGLTFVGSPGVGK-THLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGK-DT 92
Query: 64 KKLKETMDAGKLVSDEL 80
K LK +++ LV D+L
Sbjct: 93 KFLKTVLNSPVLVLDDL 109
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 28.1 bits (62), Expect = 0.68
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58
++ G+ + V L+ + A++
Sbjct: 124 VVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVP 160
Score = 26.6 bits (58), Expect = 2.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 21 ILLGPPGSGKGTQAPLFAKK 40
IL+G PGSGK T A +
Sbjct: 28 ILVGSPGSGKSTIAEELCQI 47
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 0.69
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 20 AILLGPPGSGKGT-----QAPLFAKKYCVCHLSTGDMLRAEVSSG---SNLGKKLKETMD 71
I+ G PG GK T + L + ++ GD + A + + K +++
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 72 AGKLVSDELVVDLISNNLDKPECQNGFLLDG 102
K + + + + + +D
Sbjct: 64 KQKKLQIDAAKGIA--EEARAGGEGYLFIDT 92
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A
{Mus musculus}
Length = 301
Score = 28.0 bits (63), Expect = 0.71
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 3 PLAYPLPKESHESTGVNA---ILL-GPPGSGKGTQAPLFAK 39
P+ +P + G+ +L GPPG GK T L AK
Sbjct: 34 PVEHP---DKFLKFGMTPSKGVLFYGPPGCGK-T---LLAK 67
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 27.9 bits (62), Expect = 0.72
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 7 PLPKESHESTGVNAILLGPPGSGKGT 32
P+P+++ + ++ G G+GK
Sbjct: 46 PMPRDAEPR---HLLVNGATGTGKSV 68
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.1 bits (62), Expect = 0.73
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 13 HESTGVNAILLGPPGSGK 30
E N + G G+GK
Sbjct: 41 REEKPNNIFIYGLTGTGK 58
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 28.0 bits (61), Expect = 0.73
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 20 AILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAEVSSGSNLGKKLKETM------DA 72
+L G PGSGK + ++ + D + + + L K ++ + +
Sbjct: 36 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 95
Query: 73 GKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
++ + ++ L + +++G RT + +++
Sbjct: 96 NRMT-EAIISRLSDQGYN-------LVIEGTGRTTDVPIQTATML 132
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 27.9 bits (63), Expect = 0.77
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 3 PLAYPLPKESHESTGVNA---ILL-GPPGSGK 30
P+ P + ++ G+ +LL GPPG GK
Sbjct: 29 PVRNP---DQFKALGLVTPAGVLLAGPPGCGK 57
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.8 bits (62), Expect = 0.83
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 3 PLAYPLPKESHESTGVNA---ILL-GPPGSGK 30
P+ +P + G+ +L GPPG GK
Sbjct: 496 PVEHP---DKFLKFGMTPSKGVLFYGPPGCGK 524
Score = 26.7 bits (59), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 3 PLAYPLPKESHESTGVN---AILL-GPPGSGK 30
PL +P ++ GV ILL GPPG+GK
Sbjct: 223 PLRHP---ALFKAIGVKPPRGILLYGPPGTGK 251
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 27.5 bits (62), Expect = 0.87
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKK 40
+ L+G SGK T L ++
Sbjct: 1 MRIYLIGFMCSGKSTVGSLLSRS 23
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 28.0 bits (62), Expect = 0.91
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 15 STGVNAILLGPPGSGKGTQAPLF 37
I+ PG+GK +
Sbjct: 184 RKKRLTIMDLHPGAGKTKRILPS 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 27.5 bits (61), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 3 PLAYPLPKESHESTGVNA---ILL-GPPGSGK 30
PL +P ++ GV ILL GPPG+GK
Sbjct: 223 PLRHP---ALFKAIGVKPPRGILLYGPPGTGK 251
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 27.5 bits (60), Expect = 1.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 11 ESHESTGVNAILLGPPGSGK 30
+ A LLG PG+GK
Sbjct: 38 RNPGHHYPRATLLGRPGTGK 57
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 27.2 bits (61), Expect = 1.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
N L+G G+GK + AK
Sbjct: 7 NIYLIGLMGAGKTSVGSQLAKL 28
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 26.8 bits (60), Expect = 1.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
++G G G T A+
Sbjct: 4 PIFMVGARGCGMTTVGRELARA 25
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 26.8 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
L G G+GK T FA+K
Sbjct: 27 RIFLTGYMGAGKTTLGKAFARK 48
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.0 bits (59), Expect = 1.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 14 ESTGVNAILLGPPGSGK 30
+ + LG G+GK
Sbjct: 42 NEVKFSNLFLGLTGTGK 58
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 26.9 bits (59), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHL 46
G G+GK T + +KK
Sbjct: 7 GTVGAGKSTISAEISKKLGYEIF 29
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 1.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 21 ILLGPPGSGKGT 32
+LLG G G+
Sbjct: 9 VLLGAHGVGRRH 20
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis,
phosphoprotein, feedback inhibition,
deoxyribonucleoside kinase, salvage pathway; HET: DCP;
2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB:
1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A*
2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Length = 230
Score = 27.0 bits (59), Expect = 1.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 7 PLPKESHESTGVNAILL-GPPGSGKGTQAPLFAKKY 41
+ E T +L+ G GSGK T F K
Sbjct: 9 RKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYK 44
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 26.6 bits (59), Expect = 1.8
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 1 MAPLAYPLPKESHESTGVNAILL-GPPGSGK 30
+ ++ + T + ++LL GPP SGK
Sbjct: 50 ELLVQQT---KNSDRTPLVSVLLEGPPHSGK 77
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.8 bits (60), Expect = 1.8
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 21 ILLGPPGSGKGT 32
+L+G G G+
Sbjct: 23 VLIGASGVGRSH 34
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 26.6 bits (58), Expect = 2.0
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
G GK T L K Y
Sbjct: 9 GNIAVGKSTFVKLLTKTY 26
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.0 bits (58), Expect = 2.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
N L+GP G+GK T A++
Sbjct: 6 NIFLVGPMGAGKSTIGRQLAQQ 27
>3hb7_A Isochorismatase hydrolase; PS structural genomics, midwest center
for structural genomics structure initiative; 2.30A
{Alkaliphilus metalliredigens}
Length = 204
Score = 26.1 bits (58), Expect = 2.7
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 10/34 (29%)
Query: 80 LVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKV 113
LV+D+ N F+ + P P E +
Sbjct: 11 LVIDM----------LNDFVGEKAPLRCPGGETI 34
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 26.3 bits (57), Expect = 2.7
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 7 PLPKESHESTGVNAILL-GPPGSGKGTQAPLFAKKY 41
P S E T + I + G +GK T + +
Sbjct: 13 PSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLC 48
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 26.3 bits (58), Expect = 2.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKK 40
G + L+G GSGK T + A+
Sbjct: 48 GRSMYLVGMMGSGKTTVGKIMARS 71
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 26.1 bits (57), Expect = 3.2
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 20 AILL-GPPGSGKGTQAPLFAK----KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
A+L+ G PG+GK A A+ ++ ++ E+S L + + ++
Sbjct: 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRI 131
Query: 75 LVSDELVVDLI 85
V L
Sbjct: 132 KAGAVHTVSLH 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 20 AILLGPPGSGK 30
A+LLGPPG GK
Sbjct: 42 ALLLGPPGCGK 52
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 25.7 bits (57), Expect = 3.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 3 PLAYPLPKESHESTGVNA----ILLGPPGSGK 30
PL +P E E G+ +L GPPG+GK
Sbjct: 36 PLKHP---ELFEKVGIEPPKGILLYGPPGTGK 64
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 25.8 bits (57), Expect = 3.8
Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 20 AILL-GPPGSGKGTQAPLFAK 39
A+L+ PG G ++
Sbjct: 26 ALLIQALPGMGDDALIYALSR 46
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 25.5 bits (55), Expect = 3.9
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 21 ILLGPPGSGKGTQAPLFAKKY 41
IL G +GK
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVL 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 25.5 bits (56), Expect = 4.2
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 1 MAPLAYPLPKESHESTGVNA----ILLGPPGSGKGTQAPLFAKK 40
M L + K + + + G G GK Q L +K
Sbjct: 16 MDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRK 59
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 25.6 bits (56), Expect = 4.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+ +L GP G+GK T+ +
Sbjct: 38 HLLLYGPNGTGKKTRCMALLES 59
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 25.8 bits (57), Expect = 4.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+ + GPPG+GK A A+
Sbjct: 40 HLLFSGPPGTGKTATAIALARD 61
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 25.7 bits (56), Expect = 5.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 14 ESTGVNAILLGPPGSGKGTQAPLF 37
+L PG+GK +
Sbjct: 238 LKKRQLTVLDLHPGAGKTRRILPQ 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 25.3 bits (56), Expect = 5.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+ + GPPG+GK A A+
Sbjct: 40 HLLFSGPPGTGKTATAIALARD 61
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 25.4 bits (55), Expect = 6.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 11 ESHESTG---VNAILLGPPGSGKGT 32
H G + + +G GSGK T
Sbjct: 5 HHHHHHGMASMIVVFVGTAGSGKTT 29
>3hu5_A Isochorismatase family protein; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium, nysgxrc; 1.50A {Desulfovibrio vulgaris}
Length = 204
Score = 25.0 bits (55), Expect = 6.2
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 10/34 (29%)
Query: 80 LVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKV 113
++D+ QN F+L G P V A
Sbjct: 12 AIIDM----------QNDFVLPGAPACVEGAMGT 35
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 25.0 bits (54), Expect = 6.4
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56
+ I+ G PG GK T L K EV
Sbjct: 1 MKIIITGEPGVGKTT---LVKKIVERLGKRAIGFWTEEV 36
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 25.0 bits (55), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY 41
+ + GPPG GK T A A++
Sbjct: 48 HLLFAGPPGVGKTTAALALAREL 70
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 25.1 bits (55), Expect = 6.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 19 NAILLGPPGSGKGTQAPLFAKK 40
+ +L+G PG+GK A+
Sbjct: 62 HVLLIGEPGTGKSMLGQAMAEL 83
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 64 KKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF 98
KKL+E +++ D+ L++ +D PE Q
Sbjct: 20 KKLEE---VVQILGDKFPCTLVAQKIDLPEYQGEP 51
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 24.9 bits (55), Expect = 7.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 2 APLAYPLPKESHESTGVNAILLGPPGSGKGT 32
P +S GV +L P G GK T
Sbjct: 12 LEAQTQGPGSMLKSVGVILVLSSPSGCGKTT 42
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 25.1 bits (55), Expect = 7.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY 41
+ + GPPG+GK + A++
Sbjct: 48 HLLFYGPPGTGKTSTIVALAREI 70
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 25.1 bits (54), Expect = 8.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 10 KESHESTGVNAILLGPPGSGK 30
E H S+ ++ G PG GK
Sbjct: 154 GEPHVSSAKVVLVDGVPGCGK 174
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 24.8 bits (55), Expect = 8.2
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 2 APLAYPLPKESHESTGVNAILLGPPGSGKGT 32
P P + + G +L GP GK T
Sbjct: 5 GPDTKPTARGQPAAVGRVVVLSGPSAVGKST 35
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 24.6 bits (54), Expect = 8.7
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
G SGK TQ + + + GK + + + K +D
Sbjct: 11 GLDKSGKTTQCMNIMESI----PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDH 62
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 24.9 bits (55), Expect = 9.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 22 LLGPPGSGKGT 32
LLGP GSGK T
Sbjct: 46 LLGPSGSGKTT 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,739,774
Number of extensions: 91973
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 122
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)