RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9244
(119 letters)
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 100 bits (250), Expect = 1e-28
Identities = 50/101 (49%), Positives = 68/101 (67%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L+G PG+GKGTQA Y + H+STGDM RA + G+ LG + K+ MD G LV D
Sbjct: 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
E+ + ++ L K +CQNGFLLDGFPRTV QAE + +++
Sbjct: 62 EVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLAD 102
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 97.7 bits (242), Expect = 1e-27
Identities = 56/101 (55%), Positives = 73/101 (72%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
ILLG P +GKGTQA +KY + +STGDMLRA V SGS LGK+ K+ MDAGKLV+D
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
ELV+ L+ + + +C+NGFLLDGFPRT+PQA+ + +
Sbjct: 62 ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN 102
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 97.6 bits (242), Expect = 2e-27
Identities = 53/101 (52%), Positives = 67/101 (66%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L+G PG+GKGTQA +KY H+STGDM RA + G+ LG K K MD G LV D
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
E+ + ++ L K +C NGFLLDGFPRTVPQAE + L+
Sbjct: 62 EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLAD 102
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 94.2 bits (233), Expect = 4e-26
Identities = 76/103 (73%), Positives = 87/103 (84%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
GV A+LLGPPG+GKGTQAP AK +CVCHL+TGDMLRA V+SGS LGKKLK TMDAGKLV
Sbjct: 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 62
Query: 77 SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
SDE+V++LI NL+ P C+NGFLLDGFPRTV QAE + LM K
Sbjct: 63 SDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 105
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 93.8 bits (232), Expect = 5e-26
Identities = 42/101 (41%), Positives = 68/101 (67%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
+LLGPPG+GKGTQA A+K + +STG++ R + G+ LG + K +DAG LV
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
+L +L+ + L+ P+ NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 62 DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 102
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 83.4 bits (205), Expect = 6e-22
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ ++ G P SGKGTQ L KY + H+S GD+LRAE+++GS GK+ KE M+ G+LV
Sbjct: 4 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 63
Query: 78 DEL-VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
DE+ V + +NG+LLDG+PR+ QA + +L ++
Sbjct: 64 DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR 106
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 81.9 bits (201), Expect = 2e-21
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
++G PGSGKGTQ +KY HLSTGD+LRAEVSSGS GK L E M+ G+LV E
Sbjct: 12 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 71
Query: 81 VVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLM 117
V+D++ + + + GFL+DG+PR V Q E+ +
Sbjct: 72 VLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI 109
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 80.8 bits (198), Expect = 6e-21
Identities = 51/103 (49%), Positives = 79/103 (76%), Gaps = 1/103 (0%)
Query: 18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
+ +L+GPPG+GKGTQAP +++ HL+TGDMLR++++ G+ LG + K+ MD G LVS
Sbjct: 3 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62
Query: 78 DELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLMMK 119
D+++V++I + L P C+NGF+LDGFPRT+PQAEK+ ++ +
Sbjct: 63 DDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKE 105
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 80.3 bits (197), Expect = 9e-21
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
+ + A ++G PGSGKGT + K + + HLS+GD+LR + G+ +G K +D GK
Sbjct: 4 ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGK 63
Query: 75 LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
L+ D+++ L+ + K Q +LLDGFPRT+PQAE +
Sbjct: 64 LIPDDVMTRLVLHE-LKNLTQYNWLLDGFPRTLPQAEALDRAYQ 106
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 80.0 bits (196), Expect = 1e-20
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDE 79
+LG PG+GKGTQ +KY HLS G++LR E S G+ +++ + GK+V E
Sbjct: 5 FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64
Query: 80 L----VVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
+ + + + +N FL+DGFPR +
Sbjct: 65 ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQG 101
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 75.0 bits (183), Expect = 1e-18
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 4/113 (3%)
Query: 9 PKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLK 67
P S + V +LG PG+GKGTQ K Y HLS GD+LRAE +GS G+ +K
Sbjct: 1 PAFSPDQVSV-IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIK 59
Query: 68 ETMDAGKLVSDELVVDLISNNLDKPE--CQNGFLLDGFPRTVPQAEKVYSLMM 118
+ G++V E+ + L+ N + ++ FL+DGFPR + QA ++
Sbjct: 60 NCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV 112
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 72.7 bits (177), Expect = 8e-18
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+LG PGSGKGTQ + + HLS GD+LR E SGS G+ + + G++V +
Sbjct: 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69
Query: 81 VVDLISNNLDKPECQNGFLLDGFPR 105
V L+ N +D + FL+DGFPR
Sbjct: 70 TVKLLKNAIDANQG-KNFLVDGFPR 93
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 61.2 bits (147), Expect = 3e-13
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
GP G+GKGT A+ L +G + R + + +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 60.0 bits (144), Expect = 9e-13
Identities = 20/82 (24%), Positives = 29/82 (35%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
GP SGK T A + AK + +L TG M RA ++E L+ +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISF 69
Query: 84 LISNNLDKPECQNGFLLDGFPR 105
S D+ + R
Sbjct: 70 GRSETGDQLVFVGDVDITHPIR 91
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 53.8 bits (128), Expect = 1e-10
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
N +L G PG GK T A K + +++ GD+ R E L E D L D
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-----QLYDGYDEEYDCPILDED 60
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPR 105
+V +L + + + D FP
Sbjct: 61 RVVDELDNQMREGGVIVDYHGCDFFPE 87
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 52.3 bits (124), Expect = 4e-10
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL 75
G+N ++ G PG+GK + A + A + HL G +++ + ++
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE---- 60
Query: 76 VSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
++ L+ + ++D + + +++
Sbjct: 61 --EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVV 101
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 52.3 bits (124), Expect = 5e-10
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 10/99 (10%)
Query: 21 ILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA--- 72
I+ G PG GK T + ++ GD + A + + +
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 73 GKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
K + + + + + +D +
Sbjct: 65 QKKLQIDAAKGIA--EEARAGGEGYLFIDTHAVIRTPSG 101
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 51.5 bits (122), Expect = 9e-10
Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 7/95 (7%)
Query: 21 ILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL 75
++ G PG G T + L +S G ++ ++ M
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKMDP 62
Query: 76 VSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQA 110
+ + + + + + ++ +D
Sbjct: 63 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPK 97
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 50.1 bits (118), Expect = 2e-09
Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 21 ILLGPPGSGKGTQA-PLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
+ +G PGSGK T A AK +++ D ++ + ++ + + + +
Sbjct: 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM---AHEERDEYKYTKKKEGIVTG 62
Query: 80 LVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
+ D + L + G ++ + +
Sbjct: 63 MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAK 101
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 49.6 bits (117), Expect = 4e-09
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
I+ GP G GK T A + GD++ V G + D ++ +
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGY----RPPWESDELLALTWKN 61
Query: 81 VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
+ DL N L QN +LD
Sbjct: 62 ITDLTVNFLL---AQNDVVLDYIAFPDEAEA 89
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 43.5 bits (101), Expect = 8e-07
Identities = 13/79 (16%), Positives = 21/79 (26%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
+L+G GSGK A A + L + G+ L + L +
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALND 69
Query: 81 VVDLISNNLDKPECQNGFL 99
+ L
Sbjct: 70 AAFAMQRTNKVSLIVCSAL 88
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.2 bits (90), Expect = 3e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLST-GDMLRAEVSSGS 60
+L G PGSGK T A A V + D L + G
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR 48
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 36.1 bits (82), Expect = 4e-04
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKK 65
L G SGK T A Y ++ ++ +
Sbjct: 6 LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAA 49
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 34.9 bits (79), Expect = 7e-04
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
++G G G T A+ + T
Sbjct: 6 FMVGARGCGMTTVGRELARALGYEFVDTDIF 36
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.0 bits (79), Expect = 8e-04
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
A+L+G PGSGK T AK V L T
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 35
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 33.9 bits (76), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
N L+GP G+GK T A++ + +
Sbjct: 4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 36
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 33.4 bits (75), Expect = 0.003
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
N + +G GSGK T A AK + L + +
Sbjct: 2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 34
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 33.8 bits (76), Expect = 0.003
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLS-TGDMLRAEVSSGSNLGKK 65
+L G PGSGK + ++ + D + + + L K
Sbjct: 36 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKL 81
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 32.3 bits (72), Expect = 0.006
Identities = 12/59 (20%), Positives = 15/59 (25%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
IL G +GK L+ G E + DA VS
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 31.8 bits (71), Expect = 0.009
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 20 AILLGPPGSGKGTQAPLFAKKYCVC 44
A L P GSGK T+ P
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYK 35
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.015
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 21 ILLGPPGSGKGTQAPLFAKKY 41
+LG SGK A +
Sbjct: 11 AILGGESSGKSVLVNKLAAVF 31
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 31.4 bits (70), Expect = 0.016
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 19 NAILLGPPGSGKGTQAPLFA 38
I+ PG+GK +
Sbjct: 11 LTIMDLHPGAGKTKRYLPAI 30
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.8 bits (68), Expect = 0.018
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH 45
G+ +L PG+GK + C
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR 35
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 31.0 bits (69), Expect = 0.028
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCH 45
N +++GP G GK A AK
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPF 77
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.3 bits (67), Expect = 0.031
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLS 47
+L GP GK T ++ H S
Sbjct: 6 VLSGPSAVGKSTVVRCLRERIPNLHFS 32
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 30.5 bits (67), Expect = 0.037
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 19 NAILL-GPPGSGKGTQAPLFAKKYC 42
+A+L+ PG G ++
Sbjct: 25 HALLIQALPGMGDDALIYALSRYLL 49
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.5 bits (65), Expect = 0.071
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
+ +G PG+GK T H++ +
Sbjct: 18 VAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 48
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 29.5 bits (65), Expect = 0.076
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 ESHESTGVNAILL-GPPGSGKGTQAPLFAKKYCVCH 45
++ + T + ++LL GPP SGK A A++
Sbjct: 33 KNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF 68
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.4 bits (64), Expect = 0.081
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 19 NAILL-GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
+LL GP G+GK T+ + + + + + SN +L
Sbjct: 34 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSS 87
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 29.1 bits (64), Expect = 0.094
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
+ + GPPG GK T A A++ + + E+++ G +
Sbjct: 47 HLLFAGPPGVGKTTAALALARELFGENWRHNFL---ELNASDERGINVIREK 95
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 28.8 bits (63), Expect = 0.12
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
+ +L GPPG GK T A + A + V T
Sbjct: 37 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 69
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 28.5 bits (62), Expect = 0.14
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
+ + GPPG+GK + K+ L +L S + ++ + +L
Sbjct: 35 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVS 94
Query: 79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
+ + N P +LD A+ M
Sbjct: 95 KPSKHDLENYPCPPY--KIIILDEADSMTADAQSALRRTM 132
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.5 bits (62), Expect = 0.15
Identities = 11/78 (14%), Positives = 20/78 (25%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
G L G G+GK T + + + + + G N +
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR 78
Query: 77 SDELVVDLISNNLDKPEC 94
V L ++
Sbjct: 79 RIAEVAKLFADAGLVCIT 96
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.4 bits (62), Expect = 0.15
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 21 ILLGPPGSGKGTQAPLFAKKY 41
+L GP G+GK T +++
Sbjct: 4 VLSGPSGAGKSTLLKKLFQEH 24
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 28.6 bits (62), Expect = 0.17
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 15 STGVNAILLGPPGSGKGTQAPLFAKKY 41
A LLG PG+GK + Y
Sbjct: 41 HHYPRATLLGRPGTGKTVTLRKLWELY 67
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 28.3 bits (62), Expect = 0.19
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 21 ILLGPPGSGKGT-------QAPLFAKKYCVCH 45
I+ P G+GK + PL+ + V H
Sbjct: 6 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSH 37
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 28.3 bits (62), Expect = 0.20
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH 45
E G N +L+ P K TQ L+ +
Sbjct: 93 EKLGANGVLVVTPYYNKPTQEGLYQHYKYISE 124
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 0.20
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
G GK T L K Y H++T + + + K
Sbjct: 9 GNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTA 53
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 28.6 bits (63), Expect = 0.20
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 9 PKESHESTGVNAILLGPPGSGKGTQAPLFAK 39
HE T N +++GP G GK A AK
Sbjct: 41 EPLRHEVTPKNILMIGPTGVGKTEIARRLAK 71
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.0 bits (61), Expect = 0.23
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 21 ILLGPPGSGKGT 32
++ GP G+GK T
Sbjct: 5 VISGPSGTGKST 16
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 28.0 bits (62), Expect = 0.23
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY 41
SH T V L G G GK T + A
Sbjct: 1 SHMVTIVRIYLDGVYGIGKSTTGRVMASAA 30
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.0 bits (61), Expect = 0.25
Identities = 8/81 (9%), Positives = 25/81 (30%), Gaps = 4/81 (4%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLST----GDMLRAEVSSGSNLGKKLKETMDAGKLV 76
+++G P GK + + + T R ++ + + G +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKI 65
Query: 77 SDELVVDLISNNLDKPECQNG 97
+ + +++ + G
Sbjct: 66 RKQCALAALNDVRKFLSEEGG 86
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.8 bits (60), Expect = 0.26
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 17 GVNAILLGPPGSGKGTQAPLFAKK 40
G L G SGK A
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVT 29
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 27.9 bits (61), Expect = 0.29
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 22 LLGPPGSGKGTQA-----PLFAKKYCVCHLSTGDMLRAEVSSGSNLG 63
L G SGK T A L + + GD +R ++ +LG
Sbjct: 29 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KDLG 73
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 27.7 bits (60), Expect = 0.30
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
G GSGK T F K
Sbjct: 16 GNIGSGKTTYLNHFEKYK 33
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.6 bits (60), Expect = 0.30
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
+ +L GPPG GK T A + A + T
Sbjct: 37 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 69
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli
[TaxId: 562]}
Length = 210
Score = 27.6 bits (60), Expect = 0.34
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 24 GPPGSGKGTQAPLFAKK 40
G G+GK T + +
Sbjct: 9 GLEGAGKTTARNVVVET 25
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 27.3 bits (59), Expect = 0.42
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
G +GK T + +
Sbjct: 9 GNIAAGKSTFVNILKQLC 26
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 27.4 bits (59), Expect = 0.43
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 11 ESHESTGVNAILLGPPGSGKGTQAPLFAKK 40
+ +G G GK T A K+
Sbjct: 40 AGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 69
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 27.2 bits (59), Expect = 0.50
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 24 GPPGSGKGTQAPLFAKK 40
G +GK TQ+ +
Sbjct: 10 GVDRAGKSTQSRKLVEA 26
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.0 bits (58), Expect = 0.55
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
G SGK T A ++ +S
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVF 56
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 26.9 bits (59), Expect = 0.57
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKY------------CVCHLSTGDMLRAEVSSGSNLGKKL 66
N +L+G G GK A A + + L G +L A + K+
Sbjct: 41 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-AGTKYRGDFEKRF 99
Query: 67 KETM 70
K +
Sbjct: 100 KALL 103
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 27.0 bits (58), Expect = 0.59
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCH 45
A+L GPPG GK T A L A++
Sbjct: 54 AAMLYGPPGIGKTTAAHLVAQELGYDI 80
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 26.7 bits (58), Expect = 0.64
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 21 ILLGPPGSGKGT 32
+LLG G G+
Sbjct: 7 VLLGAHGVGRRH 18
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 26.6 bits (57), Expect = 0.68
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
G G+GK T + +
Sbjct: 7 GVDGAGKRTLVEKLSGAF 24
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 26.4 bits (57), Expect = 0.71
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCH 45
+ G GSGK T A L
Sbjct: 8 ITGNIGSGKSTVAALLRSWGYPVL 31
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.9 bits (59), Expect = 0.71
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 19 NAILLGPPGSGK 30
N +L+G PG GK
Sbjct: 45 NPVLIGEPGVGK 56
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 26.4 bits (57), Expect = 0.98
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 24 GPPGSGKGTQAPLFAKK 40
G +GK TQ + KK
Sbjct: 10 GLDRTGKTTQCNILYKK 26
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 1.1
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG------SNLGKKLKETMDAGK 74
++ G G+GK + F + G + E + + G L + +D GK
Sbjct: 30 LVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 89
Query: 75 LVSDELVVDLISNNLDKPECQNGFL 99
L + D + + +
Sbjct: 90 LFILDASPDPEGQEVVGGFDLSALI 114
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.7 bits (55), Expect = 1.2
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 21 ILLGPPGSGKGTQAPLFAKKY 41
L GPPG GK T ++
Sbjct: 5 FLTGPPGVGKTTLIHKASEVL 25
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.9 bits (55), Expect = 1.3
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 17 GVNAILLGPPGSGKGT 32
G+N I+ G GSGK +
Sbjct: 24 GINLII-GQNGSGKSS 38
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 26.1 bits (56), Expect = 1.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 19 NAILLGPPGSGKGTQA 34
++ G G+GK T
Sbjct: 30 GVLVFGDRGTGKSTAV 45
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCV 43
N +L+GP GSGK A AK +
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDI 94
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 25.8 bits (56), Expect = 1.5
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 13 HESTGVNAILLGPPGSGKGTQAPLFAKKY 41
+S G++ ++ G S + +
Sbjct: 11 EKSEGISILINGEDLSYPREVSLELPEYV 39
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 25.8 bits (55), Expect = 1.5
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCH 45
+ I+ G PG GK T A +
Sbjct: 38 HMIISGMPGIGKTTSVHCLAHELLGRS 64
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 1.7
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 7 PLPKESHESTGVNAILLGPPGSGKGT 32
P+P+++ + ++ G G+GK
Sbjct: 43 PMPRDAEPR---HLLVNGATGTGKSV 65
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 25.3 bits (54), Expect = 1.8
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 22 LLGPPGSGKGT 32
+ G PG GK T
Sbjct: 5 ITGEPGVGKTT 15
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
GP G GK T L
Sbjct: 11 GPHGMGKTTTTQLLVALG 28
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 25.2 bits (54), Expect = 2.2
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58
+ G PG GK T + S+
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.4 bits (55), Expect = 2.3
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 24 GPPGSGKGTQAPLFAKKY 41
G G GK T A F +
Sbjct: 12 GAYGIGKTTAAEEFLHHF 29
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 25.2 bits (54), Expect = 2.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCH 45
L G GSGK T A FA
Sbjct: 8 LTGGIGSGKSTVANAFADLGINVI 31
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 25.4 bits (54), Expect = 2.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 14 ESTGVNAILLGPPGSGK 30
+T +++ GSGK
Sbjct: 21 RTTEGPLLIMAGAGSGK 37
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 25.1 bits (53), Expect = 2.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 14 ESTGVNAILLGPPGSGK 30
E ++L GSGK
Sbjct: 11 EFVTGPCLVLAGAGSGK 27
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 24.7 bits (53), Expect = 3.1
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 19 NAILL-GPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVSSGSNLGKKLKETMDA 72
N L G GSGK T A A Y ++ A LG+K+ +
Sbjct: 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 70
Query: 73 GKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
+ + E ++ L+D R + L
Sbjct: 71 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR 116
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.0 bits (53), Expect = 3.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 21 ILLGPPGSGKGT 32
+ +G GSGK T
Sbjct: 4 VFVGTAGSGKTT 15
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 24.6 bits (53), Expect = 3.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 7 PLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKY 41
PL E + +++G G GK T A+++
Sbjct: 1 PLNVEGKAPFVI--LMVGVNGVGKTTTIGKLARQF 33
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 24.1 bits (52), Expect = 4.8
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 17 GVNAILLGPPGSGKGTQA--------PLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKE 68
G+ ++ G G GK A L A + + V + + L E
Sbjct: 14 GLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTI---VGAAPPILSHLLE 70
Query: 69 TMDAGKL 75
G +
Sbjct: 71 IRGLGII 77
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 24.1 bits (52), Expect = 4.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 17 GVNAILLGPPGSGKGTQA 34
GV +L G G GK A
Sbjct: 15 GVGVLLTGRSGIGKSECA 32
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus
influenzae [TaxId: 727]}
Length = 205
Score = 24.1 bits (51), Expect = 4.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 22 LLGPPGSGKGTQAPLFAKKYCVCH 45
L G GSGK T A LF
Sbjct: 7 LTGGIGSGKTTIANLFTDLGVPLV 30
>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome
subunit) {Thermochromatium tepidum [TaxId: 1050]}
Length = 310
Score = 24.1 bits (52), Expect = 5.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 99 LLDGFPRTVPQAEKVYSLMM 118
L P ++ QAE + LMM
Sbjct: 196 LAGSNPASLKQAEWTFGLMM 215
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 23.8 bits (51), Expect = 5.5
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 17 GVNAILLGPPGSGKGTQA 34
GV ++ G G GK A
Sbjct: 15 GVGVLITGDSGIGKSETA 32
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 23.7 bits (51), Expect = 6.4
Identities = 2/56 (3%), Positives = 13/56 (23%)
Query: 44 CHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFL 99
+ + ++ ++ N + + + + I +
Sbjct: 102 KYWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLELAIRKLYGYNLSIIPYF 157
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 23.8 bits (50), Expect = 6.7
Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 21 ILLGPPGSGKGT----QAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
G+GK T P + L +V +L++ A +V
Sbjct: 6 AFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 77 SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
+ + L++ D+ E FL + V
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFK 106
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 23.6 bits (50), Expect = 7.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 22 LLGPPGSGKGTQAPLFAKKY 41
L+G G+GK T A A Y
Sbjct: 17 LVGVQGTGKATTAGKLAYFY 36
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 23.4 bits (50), Expect = 7.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 22 LLGPPGSGKGT 32
LLGP G+GK
Sbjct: 29 LLGPTGAGKSV 39
>d1cbka_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Haemophilus influenzae [TaxId:
727]}
Length = 160
Score = 23.5 bits (50), Expect = 8.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 51 MLRAEVSSGSNLGKKLK 67
M+ A ++ GSNL ++
Sbjct: 1 MITAYIALGSNLNTPVE 17
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 23.5 bits (50), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 22 LLGPPGSGKGTQAPLFAKKY 41
++G G+GK T AK +
Sbjct: 16 VVGVNGTGKTTSCGKLAKMF 35
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 23.4 bits (50), Expect = 9.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 22 LLGPPGSGKGT 32
L+GP G+GK T
Sbjct: 33 LIGPNGAGKTT 43
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 23.5 bits (50), Expect = 9.9
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 22 LLGPPGSGKGT 32
+LGP G+GK
Sbjct: 31 ILGPTGAGKTL 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.388
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,206
Number of extensions: 16495
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 107
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.8 bits)