BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9245
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
+TGEPLI+RSDDN +ALK RL++YH QTTPL++YY+K+G+H +DA+++ VF I
Sbjct: 168 ITGEPLIRRSDDNEKALKIRLQAYHTQTTPLIEYYRKRGIHSAIDASQTPDVVFASILAA 227
Query: 127 FQNCTKQRKDQVLFI 141
F T KD V+FI
Sbjct: 228 FSKATC--KDLVMFI 240
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
+TGEPLI+RSDDN +ALK RLE+YH QTTPLV+YY K+G+H +DA+++ VF I
Sbjct: 168 ITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAA 227
Query: 127 FQNCT 131
F T
Sbjct: 228 FSKAT 232
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF-NMIDR 125
VTGE L++RSDDNA+ALKKRL +YH QT P+VD+Y+K G+ VDA++ V+ +++++
Sbjct: 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 216
Query: 126 VFQN 129
+ +N
Sbjct: 217 LGKN 220
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 42/54 (77%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
VTGE L++RSDDNA+ALKKRL +YH QT P+VD+Y+K G+ VDA++ V+
Sbjct: 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVW 210
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF-NMIDR 125
VTGE L++ SDDNA+ALKKRL +YH QT P+VD+Y+K G+ VDA++ V+ +++++
Sbjct: 157 VTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 216
Query: 126 VFQN 129
+ +N
Sbjct: 217 LGKN 220
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPL+ R DDNAEA+K RL+ +HKQT PLV +Y+ G+ +V+A +EV I ++
Sbjct: 157 VTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216
Query: 127 F 127
Sbjct: 217 L 217
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
+I+R DD E +KKRLE Y +QT PL++YY+KKG+ +DA+K EV+ + V +
Sbjct: 147 VIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 11/97 (11%)
Query: 30 EVPLGLDFRNRIGKYMRIIILVYLAKG---YIQGLQKKLKVTGEPLIKRSDDNAEALKKR 86
EV G +F RIG+ +L+Y+ G Q L K+ + +G R DDN E +KKR
Sbjct: 99 EVQQGEEFERRIGQP---TLLLYVDAGPETMTQRLLKRGETSG-----RVDDNEETIKKR 150
Query: 87 LESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
LE+Y+K T P++ +Y+K+G+ +V+A S VF+ +
Sbjct: 151 LETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQV 187
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 30 EVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLES 89
EV G +F +IG+ +L+Y+ G + + K+L GE R DDN E +KKRLE+
Sbjct: 99 EVKQGEEFERKIGQP---TLLLYVDAGP-ETMTKRLLKRGE-TSGRVDDNEETIKKRLET 153
Query: 90 YHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
Y+K T P++ +Y+K+G+ +V+A S +VF+ +
Sbjct: 154 YYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQV 187
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119
VT EPLI+R DDN + LKKRL + +T+PL+ YY+ K L +DA + + ++
Sbjct: 181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDL 233
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
+TGEPLI+R DD E + KRL++Y QT P+++YYQKKG+ + + + +++ +
Sbjct: 153 LTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGV-LETFSGTETNKIWPYVYAF 211
Query: 127 FQNCTKQR 134
Q QR
Sbjct: 212 LQTKVPQR 219
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 40/53 (75%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
RSDDN E+L+KR+++Y + T P++D Y++ G ++DA+KS EVF+ + ++F
Sbjct: 140 RSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 192
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL 106
+TGEPL++R DD E + KRL++Y QT P+++YY+KKG+
Sbjct: 152 LTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGV 191
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
RSDDN E +++RLE Y ++T PLV YY+ +G+ +VD + EV+ I
Sbjct: 132 RSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARI 180
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 61 LQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYY 101
++ K VTGEPL++R DD E +KKRL+ Y QT PL+ YY
Sbjct: 150 VEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYY 190
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 61 LQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL-----HYQVDAAKS 115
++ K VTGE L R DD E ++KRL YH+ T PL+ YY K+ + +VD K
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP 201
Query: 116 SREVFNMIDRVF 127
EV ++++
Sbjct: 202 VAEVRADLEKIL 213
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 61 LQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL-----HYQVDAAKS 115
++ K VTGE L R DD E ++KRL YH+ T PL+ YY K+ + +VD K
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP 201
Query: 116 SREVFNMIDRVF 127
EV ++++
Sbjct: 202 VAEVRADLEKIL 213
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 61 LQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL-----HYQVDAAKS 115
++ K VTGE L R DD E ++KRL YH+ T PL+ YY K+ + +VD K
Sbjct: 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKP 201
Query: 116 SREVFNMIDRVF 127
EV ++++
Sbjct: 202 VAEVRADLEKIL 213
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY 205
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLVNVNGQRDIQDVY 205
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+ + + +
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVYADVKDLLE 213
Query: 129 NCTK 132
K
Sbjct: 214 GLKK 217
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVY 205
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVY 205
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQRDIQDVY 205
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVY 205
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL-----HYQVDAAKSSREVFNM 122
TGE L R DD E ++KRL YH+ T PL+ YY K+ + +VD K EV
Sbjct: 149 TGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRAD 208
Query: 123 IDRVF 127
++++
Sbjct: 209 LEKIL 213
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPL+++ DD EA+ RL Y P+++ Y+ +G+ +Q ++++ ++ + +
Sbjct: 173 VTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETNK-IWPYVYTL 231
Query: 127 FQN 129
F N
Sbjct: 232 FSN 234
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R DD E +K RL+ KQT PL+D+Y +KG+ +D + ++VF
Sbjct: 154 GGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF 205
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQ PL+D+Y +KG V+ + ++V+
Sbjct: 154 GGELYQRADDNEETVSKRLEVNMKQIQPLLDFYSEKGYLANVNGQRDIQDVY 205
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 61 LQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
++ K G L +R+DDN + + RLE QT PL+ +Y K + ++ K ++VF
Sbjct: 146 VEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVF 205
Query: 121 NMIDRVFQN 129
+D + Q
Sbjct: 206 KDLDVILQG 214
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 66 KVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
K GE L +R+DDN + RLE KQ PLVD+Y++KG ++ + +VF
Sbjct: 152 KCGGE-LYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVF 205
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPL+++ DD EA+ R Y P+++ Y+ +G+ +Q ++++ ++ + +
Sbjct: 151 VTGEPLVQQEDDKPEAVAARPRQYKDVAKPVIELYKSRGVLHQFSGTETNK-IWPYVYTL 209
Query: 127 FQN 129
F N
Sbjct: 210 FSN 212
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
G L +R+DDN E + KRLE KQT PL+ +Y K + V+ + ++VF
Sbjct: 154 GGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVF 205
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128
RSDDN E++KKR +++ QT ++D+Y K + A + EV+N ++ +F+
Sbjct: 137 RSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFK 190
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%)
Query: 30 EVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLES 89
EV G +F RIG +I + A L + + + P+ DD + + KRLE+
Sbjct: 102 EVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQ-MSRSSLPV----DDTTKTIAKRLEA 156
Query: 90 YHKQTTPLVDYYQKKGLHYQVDAAKSSREVF----NMIDRVF 127
Y++ + P++ YY+ K ++++A + +VF ID +F
Sbjct: 157 YYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSIF 198
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
RSDDN E++KKR ++ + + P+++Y++ K +V +S +V+
Sbjct: 147 RSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVY 192
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128
R DDN E + KR ++++ T P++++Y+++ +DA+ + +F+ ++ Q
Sbjct: 159 RVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQ 212
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
R+DD + + R++ Y +T PL++YY+ + VDA + EVF
Sbjct: 149 RADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVF 192
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
R+DD + + R++ Y +T PL++YY+ + VDA + EVF
Sbjct: 129 RADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVF 172
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 32.3 bits (72), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCT 131
L +R DD E +K RLE+Y++ L+ Y+ + Q DA + VF ID + +
Sbjct: 155 LTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDA--VFAKIDELLGSIL 212
Query: 132 KQRKDQV 138
+++ + V
Sbjct: 213 EKKNEMV 219
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 82 ALKKRLESYHKQTTP--LVDYYQKKGLHYQV 110
AL++ + SYH +TTP L D ++ G H +V
Sbjct: 38 ALEQAVVSYHGETTPQILTDAVERAGYHARV 68
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 82 ALKKRLESYHKQTTP--LVDYYQKKGLHYQV 110
AL++ + SYH +TTP L D ++ G H +V
Sbjct: 39 ALEQAVVSYHGETTPQILTDAVERAGYHARV 69
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 82 ALKKRLESYHKQTTP--LVDYYQKKGLHYQV 110
AL++ + SYH +TTP L D ++ G H +V
Sbjct: 39 ALEQAVVSYHGETTPQILTDAVERAGYHARV 69
>pdb|3P1Y|A Chain A, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|B Chain B, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|C Chain C, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
pdb|3P1Y|D Chain D, Crystal Structure Of The Chimeric Archaeoglobus Fulgidus
Rna Splicing Endonuclease With The Broadest Substrate
Specificity
Length = 315
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 7 SHSFIILTQTELI-RYNQSSSSDVEVPLGLDFRNRI 41
S ++I QTE+ RY S DVE P G DF +
Sbjct: 154 SDEYVITKQTEIFSRYFYGSPLDVEKPRGADFEGPV 189
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 899
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 80 AEALKKRLESYHK-QTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRK 135
A ALK +L S Q PL D + D+ +SS V + ID N ++RK
Sbjct: 517 ASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKRK 573
>pdb|2DO5|A Chain A, Solution Structure Of The Sap Domain Of Human Splicing
Factor 3b Subunit 2
Length = 58
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 59 QGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQT 94
Q LQ KL G P+ N E L +RL+SY +QT
Sbjct: 14 QELQAKLAEIGAPI----QGNREELVERLQSYTRQT 45
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 78 DNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
+NA+A+KK+L +Q P + HY+ + S EV + +
Sbjct: 29 ENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSL 74
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 54 AKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYH 91
A+ Y+Q L K KV L +SD A L R+ +++
Sbjct: 280 ARNYLQSLPSKTKVAWAKLFPKSDSKALDLLDRMLTFN 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,645,613
Number of Sequences: 62578
Number of extensions: 137496
Number of successful extensions: 393
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 55
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)