Query psy9245
Match_columns 141
No_of_seqs 191 out of 1133
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:33:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3079|consensus 99.9 2.4E-27 5.3E-32 184.3 7.5 112 1-130 81-194 (195)
2 PRK14526 adenylate kinase; Pro 99.9 4.8E-26 1E-30 179.8 8.8 121 7-129 78-209 (211)
3 PLN02674 adenylate kinase 99.9 9.1E-26 2E-30 182.2 8.6 119 7-127 109-243 (244)
4 PLN02459 probable adenylate ki 99.9 5.8E-23 1.2E-27 167.4 9.0 120 6-129 108-251 (261)
5 TIGR01351 adk adenylate kinase 99.9 8.4E-23 1.8E-27 159.2 8.5 119 7-127 78-209 (210)
6 PRK14529 adenylate kinase; Pro 99.9 1.9E-22 4.2E-27 160.9 7.9 119 7-127 77-222 (223)
7 PRK00279 adk adenylate kinase; 99.9 1.1E-21 2.4E-26 153.4 9.4 120 8-129 79-214 (215)
8 PRK14530 adenylate kinase; Pro 99.8 4.5E-21 9.8E-26 150.0 8.7 121 8-130 83-214 (215)
9 PTZ00088 adenylate kinase 1; P 99.8 6E-21 1.3E-25 152.6 8.4 120 5-126 84-228 (229)
10 KOG3078|consensus 99.8 5.6E-21 1.2E-25 153.5 7.0 124 7-133 93-228 (235)
11 PRK14528 adenylate kinase; Pro 99.8 8E-20 1.7E-24 140.8 8.4 102 7-126 79-185 (186)
12 PRK14527 adenylate kinase; Pro 99.8 3.8E-18 8.3E-23 131.1 8.6 102 8-127 84-190 (191)
13 PRK14531 adenylate kinase; Pro 99.7 4.5E-18 9.8E-23 130.2 8.2 100 7-127 79-182 (183)
14 PRK13808 adenylate kinase; Pro 99.7 2.7E-17 5.9E-22 138.1 8.4 105 8-130 79-194 (333)
15 PLN02842 nucleotide kinase 99.7 1.7E-16 3.6E-21 139.4 8.0 116 8-131 77-204 (505)
16 PLN02200 adenylate kinase fami 99.7 3.4E-16 7.3E-21 125.3 8.6 106 8-132 121-227 (234)
17 PRK02496 adk adenylate kinase; 99.6 1.4E-15 3E-20 115.8 8.8 101 7-128 79-183 (184)
18 PRK14532 adenylate kinase; Pro 99.6 2.6E-15 5.6E-20 114.4 8.8 104 7-128 78-186 (188)
19 TIGR01359 UMP_CMP_kin_fam UMP- 99.6 7.1E-15 1.5E-19 111.1 8.7 103 7-127 76-182 (183)
20 TIGR01360 aden_kin_iso1 adenyl 99.5 3.3E-14 7.1E-19 107.1 8.9 105 7-129 82-187 (188)
21 cd01428 ADK Adenylate kinase ( 99.5 1.6E-14 3.4E-19 109.5 5.9 95 7-119 77-194 (194)
22 COG0563 Adk Adenylate kinase a 99.4 4E-13 8.7E-18 103.8 5.4 94 9-127 80-177 (178)
23 PF00406 ADK: Adenylate kinase 99.3 3.8E-12 8.3E-17 94.1 3.6 75 6-106 73-151 (151)
24 PRK13974 thymidylate kinase; P 99.0 1.6E-09 3.6E-14 84.9 6.8 92 25-130 111-207 (212)
25 PF05191 ADK_lid: Adenylate ki 98.3 7E-08 1.5E-12 56.8 -0.3 30 48-77 7-36 (36)
26 PRK13973 thymidylate kinase; P 97.9 3.1E-05 6.7E-10 60.7 7.0 92 27-130 107-207 (213)
27 PHA02530 pseT polynucleotide k 97.2 0.00024 5.1E-09 57.6 2.6 82 27-118 83-171 (300)
28 PRK14738 gmk guanylate kinase; 96.9 0.0015 3.3E-08 50.9 4.3 57 69-130 139-195 (206)
29 PRK13975 thymidylate kinase; P 96.5 0.0084 1.8E-07 45.4 5.8 76 43-129 113-190 (196)
30 PRK08233 hypothetical protein; 96.2 0.0082 1.8E-07 44.6 4.6 74 51-130 102-178 (182)
31 PRK01184 hypothetical protein; 96.0 0.026 5.6E-07 42.5 6.6 98 7-130 80-179 (184)
32 PRK00698 tmk thymidylate kinas 95.8 0.028 6.1E-07 42.6 5.9 72 43-130 127-203 (205)
33 PRK14731 coaE dephospho-CoA ki 95.7 0.014 2.9E-07 45.7 3.7 66 51-130 138-203 (208)
34 PRK10078 ribose 1,5-bisphospho 95.2 0.035 7.6E-07 42.2 4.5 54 70-132 126-179 (186)
35 PRK08356 hypothetical protein; 95.1 0.034 7.3E-07 42.7 4.3 92 9-130 96-193 (195)
36 TIGR00041 DTMP_kinase thymidyl 94.8 0.072 1.6E-06 40.2 5.3 68 44-123 128-195 (195)
37 cd01672 TMPK Thymidine monopho 94.8 0.051 1.1E-06 40.4 4.3 65 51-128 130-199 (200)
38 PRK03839 putative kinase; Prov 94.7 0.059 1.3E-06 40.5 4.6 36 96-131 119-155 (180)
39 PRK03731 aroL shikimate kinase 94.7 0.04 8.6E-07 40.9 3.6 38 79-128 132-169 (171)
40 PRK00300 gmk guanylate kinase; 94.6 0.085 1.8E-06 40.2 5.4 55 69-130 131-185 (205)
41 TIGR02322 phosphon_PhnN phosph 94.3 0.095 2.1E-06 39.2 4.9 54 69-129 125-178 (179)
42 COG0194 Gmk Guanylate kinase [ 94.3 0.14 3.1E-06 40.4 5.9 66 51-130 118-183 (191)
43 COG0125 Tmk Thymidylate kinase 93.7 0.14 3.1E-06 40.6 5.0 25 106-130 180-204 (208)
44 PF02223 Thymidylate_kin: Thym 93.4 0.13 2.9E-06 38.6 4.3 69 43-123 118-186 (186)
45 PRK07933 thymidylate kinase; V 92.6 0.15 3.2E-06 40.1 3.6 23 105-127 189-211 (213)
46 smart00072 GuKc Guanylate kina 92.0 0.37 7.9E-06 36.6 5.0 55 68-129 128-182 (184)
47 PRK14529 adenylate kinase; Pro 89.8 0.11 2.3E-06 41.7 0.3 41 25-71 83-127 (223)
48 PLN02459 probable adenylate ki 88.2 0.14 3.1E-06 42.0 -0.0 38 26-70 116-153 (261)
49 PRK14734 coaE dephospho-CoA ki 87.5 0.65 1.4E-05 36.1 3.2 68 51-132 130-197 (200)
50 PRK13976 thymidylate kinase; P 86.6 2 4.3E-05 33.7 5.6 26 106-131 172-203 (209)
51 PLN02674 adenylate kinase 86.5 0.23 4.9E-06 40.4 0.2 40 25-70 115-158 (244)
52 PRK00081 coaE dephospho-CoA ki 85.4 0.98 2.1E-05 34.7 3.2 82 31-129 111-193 (194)
53 PLN02772 guanylate kinase 85.1 1.6 3.4E-05 38.1 4.7 64 68-137 261-326 (398)
54 PLN02924 thymidylate kinase 84.8 4.8 0.0001 31.9 7.0 25 105-129 179-203 (220)
55 PRK06217 hypothetical protein; 84.1 7 0.00015 29.4 7.4 77 51-130 88-180 (183)
56 TIGR01351 adk adenylate kinase 83.3 0.39 8.4E-06 37.1 0.2 38 26-69 85-123 (210)
57 PF01591 6PF2K: 6-phosphofruct 83.0 4.7 0.0001 32.3 6.3 60 78-141 68-128 (222)
58 TIGR03263 guanyl_kin guanylate 82.4 2.2 4.9E-05 31.5 4.0 54 68-128 126-179 (180)
59 cd02030 NDUO42 NADH:Ubiquinone 81.1 2.1 4.5E-05 33.5 3.6 25 101-125 191-217 (219)
60 KOG3327|consensus 78.9 4.2 9.1E-05 32.5 4.6 53 72-130 141-196 (208)
61 PRK14737 gmk guanylate kinase; 78.7 6.4 0.00014 30.2 5.6 54 69-129 131-184 (186)
62 TIGR01313 therm_gnt_kin carboh 78.1 2.6 5.6E-05 30.8 3.1 23 106-128 140-162 (163)
63 PRK04040 adenylate kinase; Pro 77.3 7.3 0.00016 29.9 5.5 53 74-127 135-187 (188)
64 PRK14526 adenylate kinase; Pro 76.0 0.9 2E-05 35.8 0.1 38 25-69 84-121 (211)
65 PRK14732 coaE dephospho-CoA ki 74.6 5.7 0.00012 30.8 4.3 68 51-132 126-193 (196)
66 PF00625 Guanylate_kin: Guanyl 72.3 3.6 7.8E-05 30.9 2.6 54 69-129 129-182 (183)
67 PTZ00088 adenylate kinase 1; P 68.5 1.6 3.5E-05 34.9 -0.0 39 25-70 92-130 (229)
68 PTZ00451 dephospho-CoA kinase; 67.6 11 0.00024 30.5 4.7 84 31-131 122-209 (244)
69 KOG3078|consensus 66.1 2.6 5.6E-05 34.3 0.7 72 26-103 100-188 (235)
70 PRK09825 idnK D-gluconate kina 64.1 4.8 0.0001 30.6 1.8 24 106-129 145-168 (176)
71 PRK11545 gntK gluconate kinase 59.1 5.1 0.00011 29.9 1.2 24 106-129 137-160 (163)
72 PLN02842 nucleotide kinase 54.7 4 8.7E-05 36.7 -0.1 39 26-70 83-121 (505)
73 PRK00279 adk adenylate kinase; 50.5 5.6 0.00012 30.7 0.2 36 26-67 85-124 (215)
74 PRK14730 coaE dephospho-CoA ki 48.3 25 0.00055 27.0 3.5 64 51-128 130-193 (195)
75 PRK14733 coaE dephospho-CoA ki 47.3 41 0.00089 26.4 4.7 84 31-131 113-200 (204)
76 PRK08154 anaerobic benzoate ca 46.4 39 0.00085 27.9 4.6 22 108-129 279-301 (309)
77 PLN02422 dephospho-CoA kinase 45.2 28 0.00061 28.0 3.5 83 31-130 112-195 (232)
78 PF09107 SelB-wing_3: Elongati 43.6 37 0.00081 20.9 3.1 32 80-111 13-44 (50)
79 COG2452 Predicted site-specifi 43.5 80 0.0017 25.1 5.6 47 84-132 123-171 (193)
80 PRK13947 shikimate kinase; Pro 41.0 62 0.0014 23.4 4.6 21 109-129 146-168 (171)
81 TIGR00152 dephospho-CoA kinase 40.9 37 0.0008 25.4 3.4 49 70-124 139-187 (188)
82 TIGR03574 selen_PSTK L-seryl-t 40.8 28 0.00061 27.4 2.8 55 70-128 111-168 (249)
83 cd00227 CPT Chloramphenicol (C 37.8 58 0.0013 24.1 4.0 21 107-127 153-174 (175)
84 PRK04182 cytidylate kinase; Pr 35.4 1.4E+02 0.0029 21.5 5.6 22 108-129 151-173 (180)
85 PRK13949 shikimate kinase; Pro 34.0 1.5E+02 0.0031 22.1 5.7 42 80-126 126-168 (169)
86 COG5227 SMT3 Ubiquitin-like pr 33.7 36 0.00077 24.1 2.1 22 3-26 60-81 (103)
87 PRK05057 aroK shikimate kinase 33.4 98 0.0021 23.1 4.6 39 87-129 132-171 (172)
88 PRK00131 aroK shikimate kinase 32.7 59 0.0013 23.2 3.3 22 108-129 149-171 (175)
89 cd01673 dNK Deoxyribonucleosid 32.7 24 0.00053 26.3 1.2 13 105-117 177-190 (193)
90 PRK13946 shikimate kinase; Pro 32.5 1.2E+02 0.0026 22.7 5.0 33 100-133 148-180 (184)
91 TIGR02173 cyt_kin_arch cytidyl 30.4 1.4E+02 0.003 21.3 4.9 57 70-127 107-170 (171)
92 KOG0707|consensus 29.1 50 0.0011 26.9 2.5 58 69-129 164-221 (231)
93 PHA02436 hypothetical protein 28.2 44 0.00095 20.7 1.6 22 106-127 10-31 (52)
94 PRK05480 uridine/cytidine kina 27.7 1.3E+02 0.0027 22.8 4.5 16 114-129 193-208 (209)
95 PF09012 FeoC: FeoC like trans 27.6 60 0.0013 20.6 2.3 36 79-114 16-51 (69)
96 PRK05416 glmZ(sRNA)-inactivati 27.1 1.1E+02 0.0024 25.3 4.3 22 108-129 138-160 (288)
97 PF11305 DUF3107: Protein of u 27.0 96 0.0021 20.8 3.2 23 108-130 14-36 (74)
98 COG0237 CoaE Dephospho-CoA kin 26.8 71 0.0015 25.1 3.0 56 70-131 139-194 (201)
99 KOG3220|consensus 24.5 1.2E+02 0.0025 24.7 3.8 57 70-132 141-197 (225)
100 PF08344 TRP_2: Transient rece 23.0 78 0.0017 20.6 2.1 35 65-102 3-37 (63)
101 PF09677 TrbI_Ftype: Type-F co 21.5 2.7E+02 0.0058 19.9 4.9 53 74-127 50-106 (111)
102 PRK08118 topology modulation p 21.2 60 0.0013 24.2 1.5 68 42-115 77-159 (167)
103 PHA02675 ORF104 fusion protein 20.3 1.8E+02 0.0038 20.3 3.5 31 73-103 25-55 (90)
104 COG0703 AroK Shikimate kinase 20.3 2.4E+02 0.0051 21.8 4.7 65 51-130 99-169 (172)
No 1
>KOG3079|consensus
Probab=99.94 E-value=2.4e-27 Score=184.35 Aligned_cols=112 Identities=29% Similarity=0.438 Sum_probs=101.4
Q ss_pred CCCCCCcceeEeehhhhhhhhhccccCcccccchhhHHhhhC-cchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCC
Q psy9245 1 MIKSNQSHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG-KYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDD 78 (141)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD 78 (141)
|..+..+-+||||| |||+++|+..||+.++ .+.+| +|++| |++.++.+++.+ +-..|.||
T Consensus 81 m~~~~~~~~fLIDG------------yPR~~~q~~~fe~~i~~~~~fv---l~fdc---~ee~~l~Rll~R~q~~~R~DD 142 (195)
T KOG3079|consen 81 MRSSGDSNGFLIDG------------YPRNVDQLVEFERKIQGDPDFV---LFFDC---PEETMLKRLLHRGQSNSRSDD 142 (195)
T ss_pred HHhcCCCCeEEecC------------CCCChHHHHHHHHHhcCCCCEE---EEEeC---CHHHHHHHHHhhcccCCCCCC
Confidence 44556666799999 9999999999999999 68888 89999 899999898863 44459999
Q ss_pred cHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 79 NAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 79 ~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
|.++|++|+++|++.|.||++||+++|++++|||++++++||.+++++|+..
T Consensus 143 n~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~~ 194 (195)
T KOG3079|consen 143 NEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDAA 194 (195)
T ss_pred chHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999998753
No 2
>PRK14526 adenylate kinase; Provisional
Probab=99.93 E-value=4.8e-26 Score=179.79 Aligned_cols=121 Identities=24% Similarity=0.277 Sum_probs=106.9
Q ss_pred cceeEeehhhhhhhhhccccCcc----------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccC
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV----------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKR 75 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr----------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R 75 (141)
+-.||||| ++++..||+.|.. .++.+..++|..|+... .+|.+||..|+||+.++.|+.|+++|++|
T Consensus 78 ~~g~ilDG--fPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R 155 (211)
T PRK14526 78 NDNFILDG--FPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQR 155 (211)
T ss_pred cCcEEEEC--CCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeecc
Confidence 45699999 7788888776521 35666667777777644 78999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 76 SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 76 ~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.||++|+|++||+.|+++|.||++||+++|+++.|||++++++||++|.++|++
T Consensus 156 ~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 156 KDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999998874
No 3
>PLN02674 adenylate kinase
Probab=99.93 E-value=9.1e-26 Score=182.21 Aligned_cols=119 Identities=32% Similarity=0.424 Sum_probs=107.1
Q ss_pred cceeEeehhhhhhhhhccccCcc---------------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV---------------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr---------------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
..-||+|| +|++..||+.|.. ++++...++|..|++.. .+|++||..|+||+.++.|+.|++
T Consensus 109 ~~g~ilDG--fPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~ 186 (244)
T PLN02674 109 QKGFILDG--FPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGE 186 (244)
T ss_pred CCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCC
Confidence 35699999 8888888885421 46777788888887654 789999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 71 rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+|++|.||++|+|++||+.|+++|.||++||+++|+++.|||++++++||++|..+|
T Consensus 187 ~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 187 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999876
No 4
>PLN02459 probable adenylate kinase
Probab=99.88 E-value=5.8e-23 Score=167.40 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=100.4
Q ss_pred CcceeEeehhhhhhhhhccccCcc----------cccchhhHHhhhCcchh-hhhhhhhhc-------------cCCCcc
Q psy9245 6 QSHSFIILTQTELIRYNQSSSSDV----------EVPLGLDFRNRIGKYMR-IIILVYLAK-------------GYIQGL 61 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qa~~~pr----------~v~q~~~fer~i~~~~~-v~g~ly~~~-------------~npP~~ 61 (141)
....||+|| ||++..||+.|.. ++++...++|..|+... .+|.+||.. ++||..
T Consensus 108 ~~~g~iLDG--FPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~ 185 (261)
T PLN02459 108 GESGFILDG--FPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLL 185 (261)
T ss_pred CCceEEEeC--CCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCC
Confidence 356799999 7777777776533 34556666677776644 789999985 478876
Q ss_pred hhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 62 QKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 62 ~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+ ++.|+++|++|.||++|+|++||+.|+++|.||++||+++|+++.|||++++++||++|.++|..
T Consensus 186 ~--~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 186 P--PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred C--CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 5 46788899999999999999999999999999999999999999999999999999999998863
No 5
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.88 E-value=8.4e-23 Score=159.23 Aligned_cols=119 Identities=33% Similarity=0.405 Sum_probs=104.3
Q ss_pred cceeEeehhhhhhhhhccccCcc------------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV------------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLI 73 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr------------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~ 73 (141)
...||||| ++.+..||+.|.. +++.+..++|..++... .+|.+||..++||..+..|+.|+++|+
T Consensus 78 ~~~~ilDG--fPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~ 155 (210)
T TIGR01351 78 ENGFILDG--FPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLI 155 (210)
T ss_pred CCcEEEeC--CCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccc
Confidence 45799999 7788888777531 45666677777776544 789999999999998888888889999
Q ss_pred cCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 74 ~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+|.||++++|++||+.|++++.||++||.++++++.|||++++++||+.|.++|
T Consensus 156 ~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 156 QREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999876
No 6
>PRK14529 adenylate kinase; Provisional
Probab=99.87 E-value=1.9e-22 Score=160.94 Aligned_cols=119 Identities=15% Similarity=0.082 Sum_probs=94.3
Q ss_pred cceeEeehhhhhhhhhccccCc----------c-----cccchhhHHhhhCcchh-hhhhhhhhccC-CCcchh-hhhcc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSD----------V-----EVPLGLDFRNRIGKYMR-IIILVYLAKGY-IQGLQK-KLKVT 68 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~p----------r-----~v~q~~~fer~i~~~~~-v~g~ly~~~~n-pP~~~~-~~d~~ 68 (141)
+..||+|| +|++..||+.|. - ++++....+|..||... .+|..|+..++ ||+.++ .|+.|
T Consensus 77 ~~g~iLDG--fPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~ 154 (223)
T PRK14529 77 KNGWLLDG--FPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVC 154 (223)
T ss_pred CCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCc
Confidence 56799999 788888877532 1 45666666777776544 34545555554 454443 79999
Q ss_pred ccccccCCCCc-HHHHHHHHHHHHhh---cHHHHHHHhh-----cCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 69 GEPLIKRSDDN-AEALKKRLESYHKQ---TTPLVDYYQK-----KGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 69 ~~rL~~R~DD~-~E~I~kRL~~Y~~~---t~Pvi~~Y~~-----~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+++|++|+||+ +|+|++||+.|+++ +.|+++||++ +|+++.|||++++++||++|.++|
T Consensus 155 ~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 155 GGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred CCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 99999999997 78999999999998 5699999996 899999999999999999999876
No 7
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.86 E-value=1.1e-21 Score=153.36 Aligned_cols=120 Identities=35% Similarity=0.462 Sum_probs=104.4
Q ss_pred ceeEeehhhhhhhhhccccCc---------------ccccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccc
Q psy9245 8 HSFIILTQTELIRYNQSSSSD---------------VEVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEP 71 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~p---------------r~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~r 71 (141)
..|+||| ++.+..||+.|. -+++.....+|..++... +||.+||..+|||..++.|+.|+++
T Consensus 79 ~g~VlDG--fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~ 156 (215)
T PRK00279 79 NGFLLDG--FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEE 156 (215)
T ss_pred CCEEEec--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCc
Confidence 3699999 777777777652 134555666677666544 7899999999999999999999999
Q ss_pred cccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 72 L~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
|.+|.||++++|++||+.|++++.||++||++.|+++.|||++++++||++|++.|.+
T Consensus 157 l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 157 LIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998864
No 8
>PRK14530 adenylate kinase; Provisional
Probab=99.84 E-value=4.5e-21 Score=149.96 Aligned_cols=121 Identities=19% Similarity=0.282 Sum_probs=103.4
Q ss_pred ceeEeehhhhhhhhhccccCcc----------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccCC
Q psy9245 8 HSFIILTQTELIRYNQSSSSDV----------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKRS 76 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr----------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R~ 76 (141)
..||+|| ++.+..||+.|.. +++.+..++|..++... .+|..||.-++||..+..|+.|+++|.+|.
T Consensus 83 ~~~IldG--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~ 160 (215)
T PRK14530 83 DGFVLDG--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRD 160 (215)
T ss_pred CCEEEcC--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCC
Confidence 4689999 7777777765421 45666666776665432 568889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 77 DDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 77 DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
||++|+|++||..|++++.||++||.++|+++.|||++++++||+.|.++|++.
T Consensus 161 dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 214 (215)
T PRK14530 161 DDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDDA 214 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998764
No 9
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.84 E-value=6e-21 Score=152.58 Aligned_cols=120 Identities=14% Similarity=0.217 Sum_probs=97.8
Q ss_pred CCcceeEeehhhhhhhhhccccCcc----------cccchhhHHhhhCcchh-hhhhhhhhcc-------CCCcc-hhhh
Q psy9245 5 NQSHSFIILTQTELIRYNQSSSSDV----------EVPLGLDFRNRIGKYMR-IIILVYLAKG-------YIQGL-QKKL 65 (141)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~qa~~~pr----------~v~q~~~fer~i~~~~~-v~g~ly~~~~-------npP~~-~~~~ 65 (141)
..+..||+|| ++.+..||+.|.. +++....++|..+++.. .+|.+||..+ +||.. +..|
T Consensus 84 ~~~~g~iLDG--fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c 161 (229)
T PTZ00088 84 DCFKGFILDG--FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADC 161 (229)
T ss_pred ccCceEEEec--CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcc
Confidence 3456799999 7778888776422 45566667777777644 7899999873 34433 3578
Q ss_pred hcccc--ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCC-EEEE---eCCCCHHHHHHHHHHH
Q psy9245 66 KVTGE--PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL-HYQV---DAAKSSREVFNMIDRV 126 (141)
Q Consensus 66 d~~~~--rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~-l~~I---da~~sieeV~~~I~~~ 126 (141)
+.|++ +|.+|.||++|+|++||+.|+++|.||++||+++|+ ++.| ||++++++|++.|.+.
T Consensus 162 ~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 162 EGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred cccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 99984 899999999999999999999999999999999999 9888 8999999999999864
No 10
>KOG3078|consensus
Probab=99.83 E-value=5.6e-21 Score=153.48 Aligned_cols=124 Identities=29% Similarity=0.398 Sum_probs=103.0
Q ss_pred cceeEeehhhhhhhhhccccCcc-----------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccccccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV-----------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIK 74 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr-----------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~ 74 (141)
+-.|++|| ++.+..||+.+-+ .++....-+|..|+... ++|+.||..||||+.++.+|+.|+.|.+
T Consensus 93 ~~~~ildg--~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~q 170 (235)
T KOG3078|consen 93 QKGFILDG--FPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQ 170 (235)
T ss_pred ccccccCC--CCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhc
Confidence 45789999 6666666666222 23333344455555433 8999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhh
Q psy9245 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQ 133 (141)
Q Consensus 75 R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~ 133 (141)
|.||++|++++||+.|++++.||++||+++|++..++|.. .++||..+...|......
T Consensus 171 r~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~ 228 (235)
T KOG3078|consen 171 REDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPE 228 (235)
T ss_pred CccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999 899999999998866433
No 11
>PRK14528 adenylate kinase; Provisional
Probab=99.81 E-value=8e-20 Score=140.84 Aligned_cols=102 Identities=24% Similarity=0.347 Sum_probs=89.2
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhh----CcchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRI----GKYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAE 81 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i----~~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E 81 (141)
..-|+||| |||+..|+..|+..+ +.++.+ ++++| |......++.++. ..+|.||++|
T Consensus 79 ~~g~viDG------------~Pr~~~qa~~l~~~~~~~~~~~d~v---I~Ld~---~~~~~~~Rl~~R~~~~gr~dd~~e 140 (186)
T PRK14528 79 KNGFLLDG------------FPRTVEQADALDALLKNEGKSIDKA---INLEV---PDGELLKRLLGRAEIEGRADDNEA 140 (186)
T ss_pred cCcEEEeC------------CCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHhcCccccCCCCCCHH
Confidence 34588999 999999999999776 356666 79999 8877777777653 4589999999
Q ss_pred HHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHH
Q psy9245 82 ALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126 (141)
Q Consensus 82 ~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~ 126 (141)
+|++||+.|++.+.||++||+++|+++.|||++++++||++|.+.
T Consensus 141 ~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 141 TIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999864
No 12
>PRK14527 adenylate kinase; Provisional
Probab=99.75 E-value=3.8e-18 Score=131.06 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=88.2
Q ss_pred ceeEeehhhhhhhhhccccCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHH
Q psy9245 8 HSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEA 82 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~ 82 (141)
..||+|| |||...|+..|+..+. +++.+ ++++| |.+....+++++ ...+|.||++++
T Consensus 84 ~~~VlDG------------fpr~~~q~~~~~~~~~~~g~~~~~v---i~l~~---~~~~~~~Rl~~R~~~~~r~dd~~~~ 145 (191)
T PRK14527 84 VRVIFDG------------FPRTLAQAEALDRLLEELGARLLAV---VLLEV---PDEELIRRIVERARQEGRSDDNEET 145 (191)
T ss_pred CcEEEcC------------CCCCHHHHHHHHHHHHHcCCCCCEE---EEEEC---CHHHHHHHHHcCcccCCCCCCCHHH
Confidence 4689999 9999999999986653 33334 68888 888888788764 356899999999
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+++|++.|++++.||++||+++|+++.|||++++++||++|+..|
T Consensus 146 ~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 146 VRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999875
No 13
>PRK14531 adenylate kinase; Provisional
Probab=99.75 E-value=4.5e-18 Score=130.21 Aligned_cols=100 Identities=24% Similarity=0.371 Sum_probs=85.6
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEA 82 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~ 82 (141)
.-.||||| |||+..|+..|+..+. +++.+ ++++| |.+....|+.++ +|.||++++
T Consensus 79 ~~g~ilDG------------fpr~~~q~~~~~~~~~~~~~~~~~v---i~l~~---~~~~l~~Rl~~R---~r~dD~~e~ 137 (183)
T PRK14531 79 SGGWLLDG------------FPRTVAQAEALEPLLEELKQPIEAV---VLLEL---DDAVLIERLLAR---GRADDNEAV 137 (183)
T ss_pred CCcEEEeC------------CCCCHHHHHHHHHHHHHcCCCCCeE---EEEEC---CHHHHHHHhhcC---CCCCCCHHH
Confidence 34588898 9999999999997664 34445 68888 777766665543 689999999
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+++||+.|++.+.|+++||.++++++.|||++++++|+++|.+.|
T Consensus 138 i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 138 IRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999876
No 14
>PRK13808 adenylate kinase; Provisional
Probab=99.71 E-value=2.7e-17 Score=138.14 Aligned_cols=105 Identities=31% Similarity=0.343 Sum_probs=91.0
Q ss_pred ceeEeehhhhhhhhhccccCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhccccc-------cccCC
Q psy9245 8 HSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGEP-------LIKRS 76 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~r-------L~~R~ 76 (141)
-.||||| |||+++|+..|+..+. .++++ ++++| |++....|+.+++ ...|.
T Consensus 79 ~G~ILDG------------FPRt~~QA~~L~~ll~~~gi~PDlV---I~LDV---p~evll~Rl~~R~~~~~~rg~~~R~ 140 (333)
T PRK13808 79 NGFILDG------------FPRTVPQAEALDALLKDKQLKLDAV---VELRV---NEGALLARVETRVAEMRARGEEVRA 140 (333)
T ss_pred CCEEEeC------------CCCCHHHHHHHHHHHHhcCCCcCeE---EEEEC---CHHHHHHHHHcCcccccccCCccCC
Confidence 4588999 9999999999987664 56666 78998 7777777776531 23699
Q ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 77 DDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 77 DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
||++|.+.+||..|++++.||++||.+.+.++.|||++++++|+++|..+|+..
T Consensus 141 DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 141 DDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred CCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999899999999999999999999999865
No 15
>PLN02842 nucleotide kinase
Probab=99.66 E-value=1.7e-16 Score=139.37 Aligned_cols=116 Identities=20% Similarity=0.367 Sum_probs=97.0
Q ss_pred ceeEeehhhhhhhhhccccCcc-----------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccC
Q psy9245 8 HSFIILTQTELIRYNQSSSSDV-----------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKR 75 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr-----------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R 75 (141)
..||||| ++.+..||+.|.. +++....++|..++... .+|.+||..++||..+. ++.+|++|
T Consensus 77 ~G~ILDG--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~----~~~rL~~R 150 (505)
T PLN02842 77 KGWLLDG--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEE----IKARLITR 150 (505)
T ss_pred CcEEEeC--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccc----cccccccC
Confidence 3488999 8888888875421 56777777887776543 78999999999987543 35689999
Q ss_pred CCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhh
Q psy9245 76 SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 76 ~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~ 131 (141)
.||++|+|++||+.|++++.||+++|. ..++.|||++++++|+++|.+.|....
T Consensus 151 ~DD~eE~IkkRL~~Y~~~t~pIl~~Y~--~rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 151 PDDTEEKVKARLQIYKKNAEAILSTYS--DIMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred CCCCHHHHHHHHHHHHHHhhhHHHhcC--cEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997 468999999999999999999988653
No 16
>PLN02200 adenylate kinase family protein
Probab=99.66 E-value=3.4e-16 Score=125.26 Aligned_cols=106 Identities=25% Similarity=0.458 Sum_probs=92.0
Q ss_pred ceeEeehhhhhhhhhccccCcccccchhhHHhhhC-cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHH
Q psy9245 8 HSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG-KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKR 86 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kR 86 (141)
..||||| |||...|+..|+..++ .++.+ +|++| |......|+.++ -..|.||+++.+++|
T Consensus 121 ~~~ILDG------------~Prt~~q~~~l~~~~~~~pd~v---i~Ld~---~~e~~~~Rl~~R-~~~r~dd~~e~~~~R 181 (234)
T PLN02200 121 NKFLIDG------------FPRTEENRIAFERIIGAEPNVV---LFFDC---PEEEMVKRVLNR-NQGRVDDNIDTIKKR 181 (234)
T ss_pred CeEEecC------------CcccHHHHHHHHHHhccCCCEE---EEEEC---CHHHHHHHHHcC-cCCCCCCCHHHHHHH
Confidence 4589999 9999999999998877 45555 78888 777776676643 347899999999999
Q ss_pred HHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 87 LESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 87 L~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
++.|++.+.|+++||++++.++.|||++++++||+.|.+.+..+..
T Consensus 182 l~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 182 LKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999987753
No 17
>PRK02496 adk adenylate kinase; Provisional
Probab=99.63 E-value=1.4e-15 Score=115.78 Aligned_cols=101 Identities=24% Similarity=0.367 Sum_probs=82.8
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhh---C-cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRI---G-KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEA 82 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i---~-~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~ 82 (141)
...|+||| |||.+.|+..|+..+ + .++.+ +++++ |.+....++..+ +|.||+++.
T Consensus 79 ~~g~vldG------------fPr~~~q~~~l~~~~~~~~~~~~~v---i~l~~---~~~~~~~Rl~~R---~~~dd~~~~ 137 (184)
T PRK02496 79 ANGWILDG------------FPRKVTQAAFLDELLQEIGQSGERV---VNLDV---PDDVVVERLLAR---GRKDDTEEV 137 (184)
T ss_pred cCCEEEeC------------CCCCHHHHHHHHHHHHhcCCCCCEE---EEEeC---CHHHHHHHHhcC---CCCCCCHHH
Confidence 34689999 999999998888654 2 45555 67777 655544444422 578999999
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+++|++.|++++.||++||++++.++.|||++++++|+++|.+.|.
T Consensus 138 ~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 138 IRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998763
No 18
>PRK14532 adenylate kinase; Provisional
Probab=99.61 E-value=2.6e-15 Score=114.43 Aligned_cols=104 Identities=24% Similarity=0.275 Sum_probs=88.4
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAE 81 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E 81 (141)
.-.|++|| |||...|+..|+..+. +++.+ +|++| |.+....|+.++. ..+|.||+++
T Consensus 78 ~~g~vldg------------~pr~~~q~~~~~~~l~~~g~~pd~v---i~L~v---~~~~~~~Rl~~R~~~~~r~dd~~~ 139 (188)
T PRK14532 78 AGGAIFDG------------FPRTVAQAEALDKMLASRGQKIDVV---IRLKV---DDEALIERIVKRFEEQGRPDDNPE 139 (188)
T ss_pred cCcEEEeC------------CCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHHcCcCcCCCCCCCHH
Confidence 34688998 9999999999986553 44455 78888 7777776766542 2579999999
Q ss_pred HHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 82 ALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 82 ~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
.+.+|++.|++++.|+++||++.+.++.|||++++++|+++|.+.|+
T Consensus 140 ~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 140 VFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999885
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.58 E-value=7.1e-15 Score=111.07 Aligned_cols=103 Identities=23% Similarity=0.372 Sum_probs=87.7
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhC---cchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG---KYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAEA 82 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~---~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E~ 82 (141)
+..|++|| |||+..|+..|+..+. .++.+ +|++| |.+....|+..+. ..+|.||+.+.
T Consensus 76 ~~~~vlDg------------~p~~~~q~~~~~~~~~~~~~~d~~---i~l~~---~~~~~~~Rl~~R~~~~~r~dd~~e~ 137 (183)
T TIGR01359 76 SKKFLIDG------------FPRNEENLEAWEKLMDNKVNFKFV---LFFDC---PEEVMIKRLLKRGQSSGRVDDNIES 137 (183)
T ss_pred CCcEEEeC------------CCCCHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHhcCCccCCCCCCCHHH
Confidence 55789999 9999999999987664 45555 78888 7777666776532 34789999999
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+++|+..|.+.+.|+++||+..+.++.|||++++++|+++|.++|
T Consensus 138 ~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 138 IKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999889999999999999999999876
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.54 E-value=3.3e-14 Score=107.14 Aligned_cols=105 Identities=30% Similarity=0.451 Sum_probs=90.6
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHHHHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAEALKK 85 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E~I~k 85 (141)
+-.||+|| +||.+.|+..|+..++.++.+ +|++| |.+....|+..+. ...|.||+++++.+
T Consensus 82 ~~~~i~dg------------~~~~~~q~~~~~~~~~~~~~v---i~l~~---~~~~~~~Rl~~R~~~~~r~d~~~~~~~~ 143 (188)
T TIGR01360 82 SKGFLIDG------------YPREVKQGEEFERRIGPPTLV---LYFDC---SEDTMVKRLLKRAETSGRVDDNEKTIKK 143 (188)
T ss_pred CCeEEEeC------------CCCCHHHHHHHHHcCCCCCEE---EEEEC---CHHHHHHHHHcccccCCCCCCCHHHHHH
Confidence 34678888 999999999999888877766 79998 7666666766532 35799999999999
Q ss_pred HHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 86 RLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 86 RL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
|++.|++++.|+++||...+.++.|||++++++|+++|.+.++.
T Consensus 144 r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 144 RLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999888999999999999999999998864
No 21
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.52 E-value=1.6e-14 Score=109.54 Aligned_cols=95 Identities=36% Similarity=0.513 Sum_probs=76.6
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhC---cchhhhhhhhhhccCCCcchhhhhcc---------------
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIG---KYMRIIILVYLAKGYIQGLQKKLKVT--------------- 68 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~---~~~~v~g~ly~~~~npP~~~~~~d~~--------------- 68 (141)
...|++|| |||...|+..|++... .++.+ ++++| |......|++
T Consensus 77 ~~~~vldg------------~Pr~~~q~~~l~~~~~~~~~~~~~---i~l~~---~~~~~~~Rl~~R~~~~~~~~~~~~~ 138 (194)
T cd01428 77 KKGFILDG------------FPRTVDQAEALDELLDEGIKPDKV---IELDV---PDEVLIERILGRRICPVSGRVYHLG 138 (194)
T ss_pred cCCEEEeC------------CCCCHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHHcCCcCCCcCCcCCcC
Confidence 45688888 8888888888887776 55555 56666 5554444433
Q ss_pred -----ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHH
Q psy9245 69 -----GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119 (141)
Q Consensus 69 -----~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV 119 (141)
+.+|.+|.||+++++++|+..|++++.|+++||.+.++++.|||++++++|
T Consensus 139 ~~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 139 KDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CCcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 345678999999999999999999999999999999999999999999875
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.39 E-value=4e-13 Score=103.83 Aligned_cols=94 Identities=27% Similarity=0.404 Sum_probs=77.3
Q ss_pred eeEeehhhhhhhhhccccCcccccchhhHHhhhCc----chhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHH
Q psy9245 9 SFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGK----YMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALK 84 (141)
Q Consensus 9 ~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~----~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~ 84 (141)
.||+|| |||.+.|+..+++.+.. .+.+ +++.+ |.+....+.++... |+||++++++
T Consensus 80 ~~I~dg------------~PR~~~qa~~l~r~l~~~g~~~d~v---~~~~~---~~~~~~~r~~~r~~--r~dd~~~~~~ 139 (178)
T COG0563 80 GFILDG------------FPRTLCQARALKRLLKELGVRLDMV---IELDV---PEELLLERLLGRRV--REDDNEETVK 139 (178)
T ss_pred eEEEeC------------CCCcHHHHHHHHHHHHHcCCCcceE---EeeeC---CHHHHHHHHhCccc--cccCCHHHHH
Confidence 689999 99999999999977554 2324 45554 55555556665432 8999999999
Q ss_pred HHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 85 KRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 85 kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+|+..|++++.|+++||. ++|||.+++++|++++.+.+
T Consensus 140 ~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 140 KRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred HHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 999999999999999997 88999999999999998765
No 23
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.26 E-value=3.8e-12 Score=94.10 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=59.6
Q ss_pred CcceeEeehhhhhhhhhccccCcccccchhhHHh----hhCcchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHH
Q psy9245 6 QSHSFIILTQTELIRYNQSSSSDVEVPLGLDFRN----RIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAE 81 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer----~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E 81 (141)
....||||| |||+..|+..|++ ....++.+ ++++| |.+.... |+.+ |+++
T Consensus 73 ~~~g~ildG------------fPrt~~Qa~~l~~~~~~~~~~~~~v---i~L~~---~~~~~~~-----R~~~---d~~~ 126 (151)
T PF00406_consen 73 CNRGFILDG------------FPRTLEQAEALEEILEEEGIPPDLV---IFLDC---PDETLIE-----RLSQ---DNEE 126 (151)
T ss_dssp TTTEEEEES------------B-SSHHHHHHHHHHHHHTTSEESEE---EEEE-----HHHHHH-----HHHT---GSHH
T ss_pred ccceeeeee------------ccccHHHHHHHHHHHhhcccchhee---ecccc---chhhhhh-----hccc---CCHH
Confidence 456799999 9999999999998 56677777 78888 6655443 3333 9999
Q ss_pred HHHHHHHHHHhhcHHHHHHHhhcCC
Q psy9245 82 ALKKRLESYHKQTTPLVDYYQKKGL 106 (141)
Q Consensus 82 ~I~kRL~~Y~~~t~Pvi~~Y~~~g~ 106 (141)
++++||+.|++++.||++||+++|+
T Consensus 127 ~i~~Rl~~y~~~~~~i~~~y~~~g~ 151 (151)
T PF00406_consen 127 VIKKRLEEYRENTEPILDYYKEQGK 151 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999885
No 24
>PRK13974 thymidylate kinase; Provisional
Probab=98.96 E-value=1.6e-09 Score=84.85 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=73.0
Q ss_pred ccCcccccc--hhhHHhhhC---cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHH
Q psy9245 25 SSSDVEVPL--GLDFRNRIG---KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVD 99 (141)
Q Consensus 25 ~~~pr~v~q--~~~fer~i~---~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~ 99 (141)
+++||.+++ ...++.... .++++ +|++| |++... +|+.+|.||+ +.+|...|++.+.|+..
T Consensus 111 ~g~~r~~~~~~~~~l~~~~~~~~~pd~~---i~ld~---~~~~~~-----~R~~~R~dD~---~e~~~~~y~~~v~~~y~ 176 (212)
T PRK13974 111 QGYGRGLDLELIKNLESIATQGLSPDLT---FFLEI---SVEESI-----RRRKNRKPDR---IEAEGIEFLERVAEGFA 176 (212)
T ss_pred ccccCCCCHHHHHHHHHHHhCCCCCCEE---EEEeC---CHHHHH-----HHHHhcccCc---hhhhhHHHHHHHHHHHH
Confidence 358998876 445554332 45656 79999 666554 4455688886 56889999999999999
Q ss_pred HHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 100 YYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 100 ~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|.+++.++.|||++++++|+++|.++|...
T Consensus 177 ~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~~ 207 (212)
T PRK13974 177 LIAEERNWKVISADQSIETISNEIKETLLNN 207 (212)
T ss_pred HHHhcCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 25
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=98.35 E-value=7e-08 Score=56.76 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=26.6
Q ss_pred hhhhhhhccCCCcchhhhhccccccccCCC
Q psy9245 48 IILVYLAKGYIQGLQKKLKVTGEPLIKRSD 77 (141)
Q Consensus 48 ~g~ly~~~~npP~~~~~~d~~~~rL~~R~D 77 (141)
+|++||.-|+||+.+++|+.||++|++|+|
T Consensus 7 Cg~~Yh~~~~pP~~~~~Cd~cg~~L~qR~D 36 (36)
T PF05191_consen 7 CGRIYHIEFNPPKVEGVCDNCGGELVQRKD 36 (36)
T ss_dssp TTEEEETTTB--SSTTBCTTTTEBEBEEGG
T ss_pred CCCccccccCCCCCCCccCCCCCeeEeCCC
Confidence 588999999999999999999999999987
No 26
>PRK13973 thymidylate kinase; Provisional
Probab=97.95 E-value=3.1e-05 Score=60.67 Aligned_cols=92 Identities=13% Similarity=-0.024 Sum_probs=64.0
Q ss_pred Cccccc--chhhHHhhh-C--cchhhhhhhhhhccCCCcchhhhhcccccc---ccCCC-CcHHHHHHHHHHHHhhcHHH
Q psy9245 27 SDVEVP--LGLDFRNRI-G--KYMRIIILVYLAKGYIQGLQKKLKVTGEPL---IKRSD-DNAEALKKRLESYHKQTTPL 97 (141)
Q Consensus 27 ~pr~v~--q~~~fer~i-~--~~~~v~g~ly~~~~npP~~~~~~d~~~~rL---~~R~D-D~~E~I~kRL~~Y~~~t~Pv 97 (141)
+++.++ +...++... + +|+++ +|++| |++....|+..+.- ..|.| ++.+..+++.+.|.+..
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~PD~v---i~Ldv---~~e~~~~Rl~~R~~~~~~~~~e~~~~~~~~~~~~~y~~l~--- 177 (213)
T PRK13973 107 VTGNVDPALLAALERVAINGVMPDLT---LILDI---PAEVGLERAAKRRGSDTPDRFEKEDLAFHEKRREAFLQIA--- 177 (213)
T ss_pred cccCCCHHHHHHHHHHHhCCCCCCEE---EEEeC---CHHHHHHHHHhccCCCccCchhhchHHHHHHHHHHHHHHH---
Confidence 344444 444555432 2 46666 79999 78777777654321 13555 46778889999999854
Q ss_pred HHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 98 VDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 98 i~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
++|. ++++.|||++++++|+++|.+++...
T Consensus 178 -~~~~--~~~~~Ida~~~~e~V~~~I~~~i~~~ 207 (213)
T PRK13973 178 -AQEP--ERCVVIDATASPEAVAAEIWAAVDQR 207 (213)
T ss_pred -HhCC--CcEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 4454 56889999999999999999988753
No 27
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.19 E-value=0.00024 Score=57.58 Aligned_cols=82 Identities=9% Similarity=-0.028 Sum_probs=55.4
Q ss_pred CcccccchhhHHhhhCcc--hhhhhhhhhhccCCCcchhhhhccccccccC--CCCcHHHHH---HHHHHHHhhcHHHHH
Q psy9245 27 SDVEVPLGLDFRNRIGKY--MRIIILVYLAKGYIQGLQKKLKVTGEPLIKR--SDDNAEALK---KRLESYHKQTTPLVD 99 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~~~--~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R--~DD~~E~I~---kRL~~Y~~~t~Pvi~ 99 (141)
.++...+...|....... .+. .+|+.| |.+.... |+.+| .+++.+.|+ +||+.|...|.|++.
T Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~--~v~l~~---~~e~~~~-----R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~ 152 (300)
T PHA02530 83 TNLNPERRRKWKELAKELGAEFE--EKVFDV---PVEELVK-----RNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYT 152 (300)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEE--EEEeCC---CHHHHHH-----HHHccCcCCCCHHHHHHHHHHHHHhcCCCCceec
Confidence 455555665565433211 111 156665 5544443 44444 556888888 999999999999999
Q ss_pred HHhhcCCEEEEeCCCCHHH
Q psy9245 100 YYQKKGLHYQVDAAKSSRE 118 (141)
Q Consensus 100 ~Y~~~g~l~~Ida~~siee 118 (141)
+|..+.+++.+|.++++.+
T Consensus 153 ~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 153 ADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred cCCCCCCEEEEECCCcCcC
Confidence 9988788899999988765
No 28
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.86 E-value=0.0015 Score=50.89 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=46.5
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.+||.+|.||+++.+.+|+..+...+.+.-. ..++.||+++++++++++|.++|...
T Consensus 139 ~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~-----~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 139 TRRLELRRTESPEELERRLATAPLELEQLPE-----FDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhcccC-----CCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 3678889999999999999998876654321 24778999999999999999999765
No 29
>PRK13975 thymidylate kinase; Provisional
Probab=96.45 E-value=0.0084 Score=45.41 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=49.3
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccC-CCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKR-SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVF 120 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R-~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~ 120 (141)
.++++ +|+++ |.+....|+..+. | .+++.+...++.+.|.+... ..+|..+..++.||++ +++++|+
T Consensus 113 ~pd~v---i~L~~---~~e~~~~Rl~~r~---~~~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~ 181 (196)
T PRK13975 113 KPDLV---FLLDV---DIEEALKRMETRD---KEIFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVF 181 (196)
T ss_pred CCCEE---EEEcC---CHHHHHHHHhccC---ccccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHH
Confidence 44545 68877 5555554443221 2 24455666777777777665 4334434568899996 8999999
Q ss_pred HHHHHHHHh
Q psy9245 121 NMIDRVFQN 129 (141)
Q Consensus 121 ~~I~~~l~~ 129 (141)
++|.+.+..
T Consensus 182 ~~I~~~i~~ 190 (196)
T PRK13975 182 NEILNKIKD 190 (196)
T ss_pred HHHHHHHHH
Confidence 999987754
No 30
>PRK08233 hypothetical protein; Provisional
Probab=96.22 E-value=0.0082 Score=44.58 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=49.7
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhh---cCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQK---KGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~---~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+|+++ |.+....+...+. +.|++.+.+.+++..|.....|...-+.+ ....+.||++.++++++++|...|
T Consensus 102 i~l~~---~~~~~~~R~~~R~---~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l 175 (182)
T PRK08233 102 IFIDT---PLDIAMARRILRD---FKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEEL 175 (182)
T ss_pred EEEcC---CHHHHHHHHHHHH---hhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHH
Confidence 67776 5554433333211 23456667889999999999887322111 234567999999999999999988
Q ss_pred Hhh
Q psy9245 128 QNC 130 (141)
Q Consensus 128 ~~~ 130 (141)
...
T Consensus 176 ~~~ 178 (182)
T PRK08233 176 YRR 178 (182)
T ss_pred HhC
Confidence 743
No 31
>PRK01184 hypothetical protein; Provisional
Probab=96.04 E-value=0.026 Score=42.53 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=62.8
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccccccccCCCC--cHHHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDD--NAEALK 84 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD--~~E~I~ 84 (141)
...+++|| + |...+...+.+.++....+ +|..| |.+....++..+ .|.|| +.+.+.
T Consensus 80 ~~~vvidg------------~-r~~~e~~~~~~~~~~~~~~---i~v~~---~~~~~~~Rl~~R---~~~~d~~~~~~~~ 137 (184)
T PRK01184 80 DEVVVIDG------------V-RGDAEVEYFRKEFPEDFIL---IAIHA---PPEVRFERLKKR---GRSDDPKSWEELE 137 (184)
T ss_pred CCcEEEeC------------C-CCHHHHHHHHHhCCcccEE---EEEEC---CHHHHHHHHHHc---CCCCChhhHHHHH
Confidence 34567777 5 6666666666666534334 67777 666665555432 35566 477888
Q ss_pred HHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 85 KRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 85 kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|++.... .++-+++.... +.|+-++++++..+++.++++..
T Consensus 138 ~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 138 ERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLERI 179 (184)
T ss_pred HHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHHH
Confidence 89876432 22445554434 34667789999999999988754
No 32
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.81 E-value=0.028 Score=42.55 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=43.3
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCC--CC---cHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRS--DD---NAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSR 117 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~--DD---~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sie 117 (141)
.++++ +|+++ |++... .|+..|. |. ......+|+..++.. +.+.+. ..++.||++++++
T Consensus 127 ~pd~~---i~l~~---~~~~~~-----~Rl~~R~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~Id~~~~~e 190 (205)
T PRK00698 127 RPDLT---LYLDV---PPEVGL-----ARIRARGELDRIEQEGLDFFERVREGYLE---LAEKEP--ERIVVIDASQSLE 190 (205)
T ss_pred CCCEE---EEEeC---CHHHHH-----HHHHhcCCcchhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCHH
Confidence 34544 67777 444433 3444453 21 122556666643332 233332 4678899999999
Q ss_pred HHHHHHHHHHHhh
Q psy9245 118 EVFNMIDRVFQNC 130 (141)
Q Consensus 118 eV~~~I~~~l~~~ 130 (141)
+|+++|.+++...
T Consensus 191 ~v~~~i~~~i~~~ 203 (205)
T PRK00698 191 EVHEDILAVIKAW 203 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 33
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.66 E-value=0.014 Score=45.68 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=49.5
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
++..| |.+... .||..|...++|.+.+|++.+.....++ ++. -+.|+.+++++++++++.++++..
T Consensus 138 i~V~a---~~e~~~-----~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~-~~a-----d~vI~N~g~~e~l~~~i~~~~~~~ 203 (208)
T PRK14731 138 VVVAA---DTELRL-----ERAVQRGMGSREEIRRRIAAQWPQEKLI-ERA-----DYVIYNNGTLDELKAQTEQLYQVL 203 (208)
T ss_pred EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHHcCChHHHH-HhC-----CEEEECCCCHHHHHHHHHHHHHHH
Confidence 45555 554433 5677787778999999999988877776 222 256889999999999999988754
No 34
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.17 E-value=0.035 Score=42.22 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=40.5
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
.||.+|...+++.+.+||+.+. +|. ..-++.||.+++++++.++|..++...+.
T Consensus 126 ~RL~~R~~~~~~~i~~rl~r~~--------~~~-~ad~~vi~~~~s~ee~~~~i~~~l~~~~~ 179 (186)
T PRK10078 126 QRLENRGRENASEINARLARAA--------RYQ-PQDCHTLNNDGSLRQSVDTLLTLLHLSQK 179 (186)
T ss_pred HHHHHhCCCCHHHHHHHHHHhh--------hhc-cCCEEEEeCCCCHHHHHHHHHHHHhhcCc
Confidence 5666677778888999996532 343 34567789899999999999998876543
No 35
>PRK08356 hypothetical protein; Provisional
Probab=95.14 E-value=0.034 Score=42.70 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=52.8
Q ss_pred eeEeehhhhhhhhhccccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccccccccCCCC------cHHH
Q psy9245 9 SFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDD------NAEA 82 (141)
Q Consensus 9 ~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD------~~E~ 82 (141)
.|+||| + |.+.|...|... +. .+ +|++| |.+... .||..|... +.+.
T Consensus 96 ~ividG------------~-r~~~q~~~l~~~-~~--~v---i~l~~---~~~~~~-----~Rl~~R~~~~~~~~~~~e~ 148 (195)
T PRK08356 96 NIAIDG------------V-RSRGEVEAIKRM-GG--KV---IYVEA---KPEIRF-----ERLRRRGAEKDKGIKSFED 148 (195)
T ss_pred eEEEcC------------c-CCHHHHHHHHhc-CC--EE---EEEEC---CHHHHH-----HHHHhcCCccccccccHHH
Confidence 588888 8 888888888763 22 23 67877 544333 455555443 3444
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+ +|+........+.- .|.+..-++.+| +++++++..+|.+++...
T Consensus 149 ~-~~~~~~~~~l~~~~-~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 149 F-LKFDEWEEKLYHTT-KLKDKADFVIVN-EGTLEELRKKVEEILREL 193 (195)
T ss_pred H-HHHHHHHHHhhhhh-hHHHhCcEEEEC-CCCHHHHHHHHHHHHHHh
Confidence 4 33332222221221 222323333355 689999999999988764
No 36
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.80 E-value=0.072 Score=40.20 Aligned_cols=68 Identities=24% Similarity=0.222 Sum_probs=39.4
Q ss_pred chhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHH
Q psy9245 44 YMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123 (141)
Q Consensus 44 ~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I 123 (141)
++++ +|+++ |.+... .|+..|.....+.. ..+..++.....-.+++.+...++.|||++++++|.++|
T Consensus 128 ~d~~---i~l~~---~~~~~~-----~R~~~r~~~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 128 PDLT---IYLDI---DPEVAL-----ERLRKRGELDREEF-EKLDFFEKVRQRYLELADKEKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred CCEE---EEEeC---CHHHHH-----HHHHhcCCcchHHH-HHHHHHHHHHHHHHHHHcCCCcEEEEeCCCCHHHHHhhC
Confidence 5555 67777 554433 34444433222222 223344444555555555456788999999999999875
No 37
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.76 E-value=0.051 Score=40.44 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=38.7
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCc-----HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDN-----AEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDR 125 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~-----~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~ 125 (141)
+|+++ |.+... +|+..|.++. ...+.+|++.++.. +.+.|. ..++.||+++++++|+++|.+
T Consensus 130 i~l~~---~~~~~~-----~R~~~R~~~~~~~~~~~~~~~~~~~~y~~---~~~~~~--~~~~~id~~~~~e~i~~~i~~ 196 (200)
T cd01672 130 ILLDI---DPEVGL-----ARIEARGRDDRDEQEGLEFHERVREGYLE---LAAQEP--ERIIVIDASQPLEEVLAEILK 196 (200)
T ss_pred EEEeC---CHHHHH-----HHHHhcCCcchhhhhhHHHHHHHHHHHHH---HHHhCC--CeEEEEeCCCCHHHHHHHHHH
Confidence 57766 544443 3444444322 23444555443332 223331 457889999999999999998
Q ss_pred HHH
Q psy9245 126 VFQ 128 (141)
Q Consensus 126 ~l~ 128 (141)
.|.
T Consensus 197 ~i~ 199 (200)
T cd01672 197 AIL 199 (200)
T ss_pred HHh
Confidence 875
No 38
>PRK03839 putative kinase; Provisional
Probab=94.69 E-value=0.059 Score=40.46 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHHHhhh
Q psy9245 96 PLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 96 Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~~~~ 131 (141)
+++++|..++.++.||++ +++++|+.+|.+.+..-.
T Consensus 119 ~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 119 CLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred HHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 566888888899999997 699999999999998643
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.68 E-value=0.04 Score=40.93 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 79 NAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 79 ~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
..+.+++|...|.+.. .+.||+++++++|+.+|.+.+.
T Consensus 132 ~~~~~~~r~~~y~~~a------------~~~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 132 VAEVLAEREALYREVA------------HHIIDATQPPSQVVSEILSALA 169 (171)
T ss_pred HHHHHHHHHHHHHHhC------------CEEEcCCCCHHHHHHHHHHHHh
Confidence 4455666666665432 2789999999999999998875
No 40
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.64 E-value=0.085 Score=40.21 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=42.6
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.+|+..|.+|+++.+++|+..+...+.+ +...+.++ +| .++++++.++..++...
T Consensus 131 ~~Rl~~R~~~~~~~i~~rl~~~~~~~~~----~~~~d~vi-~n--~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 131 ERRLRGRGTDSEEVIARRLAKAREEIAH----ASEYDYVI-VN--DDLDTALEELKAIIRAE 185 (205)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHh----HHhCCEEE-EC--CCHHHHHHHHHHHHHHH
Confidence 4678899999999999999999877644 33334333 44 48999999999998865
No 41
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.29 E-value=0.095 Score=39.17 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=38.6
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.+||..|...+++.+.+||..+..... ...-++.|+.+++++++.++|.+++..
T Consensus 125 ~~Rl~~R~~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 125 AQRLAARGRESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 356666655567899999975543322 224466689999999999999998754
No 42
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.27 E-value=0.14 Score=40.39 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=49.8
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|+.+ |..+. +.+||.+|..|++|+|++||...+....-.-+ |. .+.| +.+.+..++++.+++...
T Consensus 118 IFi~p---Ps~ee----L~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~-fd----yviv--Ndd~e~a~~~l~~ii~ae 183 (191)
T COG0194 118 IFILP---PSLEE----LERRLKGRGTDSEEVIARRLENAKKEISHADE-FD----YVIV--NDDLEKALEELKSIILAE 183 (191)
T ss_pred EEEcC---CCHHH----HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHh-CC----EEEE--CccHHHHHHHHHHHHHHH
Confidence 67776 65443 24789999999999999999999998876665 43 2333 466788899998887655
No 43
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=93.67 E-value=0.14 Score=40.57 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.+..|||++++++|.++|.+.+...
T Consensus 180 r~~vIda~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 180 RIIVIDASRPLEEVHEEILKILKER 204 (208)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999988753
No 44
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=93.40 E-value=0.13 Score=38.63 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=35.9
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
.|+++ +|+++ |++....|+-.+....+.+.......++++ +.-.-+.+ ..+.++.|||+.++++|.++
T Consensus 118 ~PDl~---~~Ldv---~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~---~~y~~l~~---~~~~~~iid~~~~~e~v~~~ 185 (186)
T PF02223_consen 118 KPDLT---FFLDV---DPEEALKRIAKRGEKDDEEEEDLEYLRRVR---EAYLELAK---DPNNWVIIDASRSIEEVHEQ 185 (186)
T ss_dssp E-SEE---EEEEC---CHHHHHHHHHHTSSTTTTTTHHHHHHHHHH---HHHHHHHH---TTTTEEEEETTS-HHHHHHH
T ss_pred CCCEE---EEEec---CHHHHHHHHHcCCccchHHHHHHHHHHHHH---HHHHHHHc---CCCCEEEEECCCCHHHHHhh
Confidence 66665 67777 555554444332211111122222333333 22223333 34779999999999999988
Q ss_pred H
Q psy9245 123 I 123 (141)
Q Consensus 123 I 123 (141)
|
T Consensus 186 I 186 (186)
T PF02223_consen 186 I 186 (186)
T ss_dssp H
T ss_pred C
Confidence 6
No 45
>PRK07933 thymidylate kinase; Validated
Probab=92.60 E-value=0.15 Score=40.11 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.3
Q ss_pred CCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 105 GLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 105 g~l~~Ida~~sieeV~~~I~~~l 127 (141)
..++.|||++++++|+++|.+.|
T Consensus 189 ~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 189 GPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred CCeEEeCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998765
No 46
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.96 E-value=0.37 Score=36.57 Aligned_cols=55 Identities=16% Similarity=0.364 Sum_probs=39.3
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+..||..|.|++++.+++||....+...- ..+|. ..|..+ +.++.+.++.++|+.
T Consensus 128 l~~rl~~R~~~~~~~i~~rl~~a~~~~~~-~~~fd-----~~I~n~-~l~~~~~~l~~~i~~ 182 (184)
T smart00072 128 LERRLRGRGTETAERIQKRLAAAQKEAQE-YHLFD-----YVIVND-DLEDAYEELKEILEA 182 (184)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhh-hccCC-----EEEECc-CHHHHHHHHHHHHHh
Confidence 34678889999999999999986554331 12232 445555 789999999988865
No 47
>PRK14529 adenylate kinase; Provisional
Probab=89.79 E-value=0.11 Score=41.68 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=31.1
Q ss_pred ccCcccccchhhHHhhh---C-cchhhhhhhhhhccCCCcchhhhhccccc
Q psy9245 25 SSSDVEVPLGLDFRNRI---G-KYMRIIILVYLAKGYIQGLQKKLKVTGEP 71 (141)
Q Consensus 25 ~~~pr~v~q~~~fer~i---~-~~~~v~g~ly~~~~npP~~~~~~d~~~~r 71 (141)
.+|||+++||..|+..+ + .++.| ++++| |.+..+.|+++++
T Consensus 83 DGfPRt~~Qa~~l~~~l~~~~~~~~~v---i~l~~---~~~~l~~Rl~~R~ 127 (223)
T PRK14529 83 DGFPRNKVQAEKLWEALQKEGMKLDYV---IEILL---PREVAKNRIMGRR 127 (223)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHhhCCc
Confidence 35999999999998664 2 45556 78988 8888777777653
No 48
>PLN02459 probable adenylate kinase
Probab=88.19 E-value=0.14 Score=42.04 Aligned_cols=38 Identities=13% Similarity=-0.092 Sum_probs=29.3
Q ss_pred cCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 26 SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
+|||++.|+..|+.. ..++.| ++++| |.+..+.+++++
T Consensus 116 GFPRt~~Qa~~Le~~-~~id~V---i~L~v---~d~~l~~Rl~gR 153 (261)
T PLN02459 116 GFPRTVRQAEILEGV-TDIDLV---VNLKL---REEVLVEKCLGR 153 (261)
T ss_pred CCCCCHHHHHHHHhc-CCCCEE---EEEEC---CHHHHHHHhhcc
Confidence 499999999999975 456666 78888 777777666654
No 49
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=87.45 E-value=0.65 Score=36.10 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=47.1
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|..| |.+... .|+.+|..=+++.+.+|+..+... +++.... -..|+.+++++++.+++..+++..
T Consensus 130 i~V~a---~~e~ri-----~Rl~~R~g~s~e~~~~ri~~Q~~~-----~~k~~~a-d~vI~N~g~~e~l~~~v~~~~~~~ 195 (200)
T PRK14734 130 VVVDV---DVEERV-----RRLVEKRGLDEDDARRRIAAQIPD-----DVRLKAA-DIVVDNNGTREQLLAQVDGLIAEI 195 (200)
T ss_pred EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHhcCCH-----HHHHHhC-CEEEECcCCHHHHHHHHHHHHHHH
Confidence 56666 555443 456666555689999999877665 2222222 356999999999999999988765
Q ss_pred hh
Q psy9245 131 TK 132 (141)
Q Consensus 131 ~~ 132 (141)
-+
T Consensus 196 ~~ 197 (200)
T PRK14734 196 LS 197 (200)
T ss_pred Hh
Confidence 44
No 50
>PRK13976 thymidylate kinase; Provisional
Probab=86.58 E-value=2 Score=33.74 Aligned_cols=26 Identities=12% Similarity=0.071 Sum_probs=21.0
Q ss_pred CEEEEeC---CCC---HHHHHHHHHHHHHhhh
Q psy9245 106 LHYQVDA---AKS---SREVFNMIDRVFQNCT 131 (141)
Q Consensus 106 ~l~~Ida---~~s---ieeV~~~I~~~l~~~~ 131 (141)
.++.||| +++ +++|.++|.+++.+.-
T Consensus 172 ~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 172 RCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred CeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 4777898 456 9999999999887654
No 51
>PLN02674 adenylate kinase
Probab=86.54 E-value=0.23 Score=40.40 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=30.1
Q ss_pred ccCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 25 SSSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 25 ~~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
.+|||++.|+..|+..+. .++.| ++++| |.+....|++++
T Consensus 115 DGfPRt~~Qa~~l~~~l~~~~~~~d~v---i~l~v---~~~~l~~Rl~gR 158 (244)
T PLN02674 115 DGFPRTVVQAQKLDEMLAKQGAKIDKV---LNFAI---DDAILEERITGR 158 (244)
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHhcc
Confidence 459999999999997763 45556 78888 777777666654
No 52
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=85.36 E-value=0.98 Score=34.72 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred ccchhhHHhhhC-cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 31 VPLGLDFRNRIG-KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 31 v~q~~~fer~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
++-+..||.... .++.+ ++..| |.+... .|+..|..-+++.+.+|+..... ..++-.... +.
T Consensus 111 ~e~pll~e~~~~~~~D~v---i~V~a---~~e~~~-----~Rl~~R~~~s~e~~~~ri~~Q~~----~~~~~~~ad--~v 173 (194)
T PRK00081 111 LDIPLLFENGLEKLVDRV---LVVDA---PPETQL-----ERLMARDGLSEEEAEAIIASQMP----REEKLARAD--DV 173 (194)
T ss_pred EEehHhhcCCchhhCCeE---EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHHhCC----HHHHHHhCC--EE
Confidence 344555663322 23334 57766 555433 46667766788899999996432 222111112 56
Q ss_pred EeCCCCHHHHHHHHHHHHHh
Q psy9245 110 VDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 110 Ida~~sieeV~~~I~~~l~~ 129 (141)
|+.+++++++..++.++++.
T Consensus 174 I~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 174 IDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred EECCCCHHHHHHHHHHHHHh
Confidence 88899999999999988753
No 53
>PLN02772 guanylate kinase
Probab=85.09 E-value=1.6 Score=38.11 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=45.0
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHH--HHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhcccc
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPL--VDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKDQ 137 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pv--i~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~~ 137 (141)
+..||..|..++++.|++||+.+..+.... ..+|. .+-+| + ++++-++++.++|...++.++.+
T Consensus 261 Le~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD----~vIvN-D-dLe~A~~~L~~iL~~~~~~~~~~ 326 (398)
T PLN02772 261 LEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFD----HILYN-D-NLEECYKNLKKLLGLDGLAAVNG 326 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCC----EEEEC-C-CHHHHHHHHHHHHhhcCcccccc
Confidence 345888999999999999999986653211 11232 23344 3 89999999999998776655544
No 54
>PLN02924 thymidylate kinase
Probab=84.81 E-value=4.8 Score=31.87 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.5
Q ss_pred CCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 105 GLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 105 g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
..++.|||++++++|+++|.+.+..
T Consensus 179 ~~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 179 SSWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred cCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3477889999999999999888765
No 55
>PRK06217 hypothetical protein; Validated
Probab=84.09 E-value=7 Score=29.38 Aligned_cols=77 Identities=9% Similarity=0.126 Sum_probs=44.9
Q ss_pred hhhhccCCCcchhhhhccccccc--cC----CCC---cHHHHHHHHHHHHhhcH---HHHH---HHhh-cCCEEEEeCCC
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLI--KR----SDD---NAEALKKRLESYHKQTT---PLVD---YYQK-KGLHYQVDAAK 114 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~--~R----~DD---~~E~I~kRL~~Y~~~t~---Pvi~---~Y~~-~g~l~~Ida~~ 114 (141)
+|+++ |......++..+... +| ..+ ....+.++...|..... .+-. ++.. .+.++.+++..
T Consensus 88 i~Ld~---~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 164 (183)
T PRK06217 88 VFLTI---PPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDL 164 (183)
T ss_pred EEEEC---CHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCC
Confidence 67777 666655555433221 22 111 12235666666664321 2222 2222 26788899999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy9245 115 SSREVFNMIDRVFQNC 130 (141)
Q Consensus 115 sieeV~~~I~~~l~~~ 130 (141)
+++++.+.|.+.|++.
T Consensus 165 ~~~~~~~~i~~~~~~~ 180 (183)
T PRK06217 165 TVEDLLDEVLDHLASA 180 (183)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999999765
No 56
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=83.28 E-value=0.39 Score=37.15 Aligned_cols=38 Identities=8% Similarity=0.028 Sum_probs=30.1
Q ss_pred cCcccccchhhHHhhhC-cchhhhhhhhhhccCCCcchhhhhccc
Q psy9245 26 SSDVEVPLGLDFRNRIG-KYMRIIILVYLAKGYIQGLQKKLKVTG 69 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~ 69 (141)
+|||...|+..|+...+ .++.+ ++++| |......++.+
T Consensus 85 GfPrt~~Qa~~l~~~~~~~~~~v---i~L~~---~~~~~~~Rl~~ 123 (210)
T TIGR01351 85 GFPRTLSQAEALDALLKEKIDAV---IELDV---PDEELVERLSG 123 (210)
T ss_pred CCCCCHHHHHHHHHHhccCCCEE---EEEEC---CHHHHHHHHHC
Confidence 49999999999999988 67776 78888 77666555554
No 57
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=82.97 E-value=4.7 Score=32.31 Aligned_cols=60 Identities=33% Similarity=0.391 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHhhcHHHHHHHh-hcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhcccccccC
Q psy9245 78 DNAEALKKRLESYHKQTTPLVDYYQ-KKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKDQVLFI 141 (141)
Q Consensus 78 D~~E~I~kRL~~Y~~~t~Pvi~~Y~-~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~~~~~~ 141 (141)
+|+++.+.|-+........+++|+. +.|-+-..||..+-.+=-+.|...+...+ -.|+||
T Consensus 68 ~n~~~~~~R~~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~----~~vlFI 128 (222)
T PF01591_consen 68 DNEEAKKLREQIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHG----IKVLFI 128 (222)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-----EEEEE
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC----CcEEEE
Confidence 6899999999999999999999999 66789999999998888888877776654 566664
No 58
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.38 E-value=2.2 Score=31.54 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=37.2
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+.+|+..|.+++++.+++||..+..+.. + .+.--.+.+| + +.++.++++..++.
T Consensus 126 ~~~Rl~~r~~~~~~~i~~rl~~~~~~~~----~-~~~~d~~i~n-~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 126 LERRLRKRGTDSEEVIERRLAKAKKEIA----H-ADEFDYVIVN-D-DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh----c-cccCcEEEEC-C-CHHHHHHHHHHHHh
Confidence 3457888999999999999998875432 2 1122233344 3 78999999988763
No 59
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=81.07 E-value=2.1 Score=33.45 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=19.5
Q ss_pred HhhcCCEEEEeCC--CCHHHHHHHHHH
Q psy9245 101 YQKKGLHYQVDAA--KSSREVFNMIDR 125 (141)
Q Consensus 101 Y~~~g~l~~Ida~--~sieeV~~~I~~ 125 (141)
|.+...+..||++ +++++|..+|..
T Consensus 191 ~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 191 ISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred hccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 4444578899999 999999888764
No 60
>KOG3327|consensus
Probab=78.94 E-value=4.2 Score=32.48 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=33.7
Q ss_pred cccCCCCcHH--HHHHHHHHHHhhcHHHHHHHhhc-CCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 72 LIKRSDDNAE--ALKKRLESYHKQTTPLVDYYQKK-GLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 72 L~~R~DD~~E--~I~kRL~~Y~~~t~Pvi~~Y~~~-g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
..++-+...| +++++...+..... ++. ..++.+||++++++|.+.|.+++++.
T Consensus 141 rggfG~Erye~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~i~e~~ 196 (208)
T KOG3327|consen 141 RGGFGEERYETVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRSLVENV 196 (208)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHHHHHHh
Confidence 3345454433 35555544444333 222 35789999999999999998877754
No 61
>PRK14737 gmk guanylate kinase; Provisional
Probab=78.74 E-value=6.4 Score=30.21 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=36.6
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
..||..|.+++++.+++||+....+. ++ ...--. .|+-+ +.++...++.++|..
T Consensus 131 ~~RL~~R~~~s~e~i~~Rl~~~~~e~----~~-~~~~D~-vI~N~-dle~a~~ql~~ii~~ 184 (186)
T PRK14737 131 EERLIHRGTDSEESIEKRIENGIIEL----DE-ANEFDY-KIIND-DLEDAIADLEAIICG 184 (186)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH----hh-hccCCE-EEECc-CHHHHHHHHHHHHhc
Confidence 46788899889999999999754322 22 111122 34444 899999999887753
No 62
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=78.15 E-value=2.6 Score=30.79 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=19.7
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
-.+.||+++++++|.+.+..++-
T Consensus 140 ~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 140 DVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred ceEEEECCCCHHHHHHHHHHHHh
Confidence 46889999999999999987763
No 63
>PRK04040 adenylate kinase; Provisional
Probab=77.31 E-value=7.3 Score=29.94 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=35.7
Q ss_pred cCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 74 ~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
.|.-++++.|..|++.-.....- ..+|...-.++.+|-++.+++-..+|.++|
T Consensus 135 ~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 135 RRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 58888999999999876654332 233332233455666666999999988876
No 64
>PRK14526 adenylate kinase; Provisional
Probab=76.02 E-value=0.9 Score=35.80 Aligned_cols=38 Identities=5% Similarity=0.008 Sum_probs=26.4
Q ss_pred ccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccc
Q psy9245 25 SSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTG 69 (141)
Q Consensus 25 ~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~ 69 (141)
.+|||+++|+..|+..++... + ++++| |.+....|+.+
T Consensus 84 DGfPR~~~Qa~~l~~~~~~~~-v---i~l~~---~~~~~~~Rl~~ 121 (211)
T PRK14526 84 DGFPRNINQAKALDKFLPNIK-I---INFLI---DEELLIKRLSG 121 (211)
T ss_pred ECCCCCHHHHHHHHHhcCCCE-E---EEEEC---CHHHHHHHHHC
Confidence 359999999999998655432 3 46666 66666655554
No 65
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=74.63 E-value=5.7 Score=30.81 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=45.1
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|..| |.+... .||..|..-+.+.+.+|+.. +. |+.++-.... +.|+.++++++...++.++++..
T Consensus 126 i~V~a---~~e~r~-----~RL~~R~g~s~e~a~~ri~~--Q~--~~~~k~~~aD--~vI~N~~~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 126 VTVDS---DPEESI-----LRTISRDGMKKEDVLARIAS--QL--PITEKLKRAD--YIVRNDGNREGLKEECKILYSTL 191 (196)
T ss_pred EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHH--cC--CHHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 56666 544432 56777866688999999976 22 4433332223 35788889999999999887765
Q ss_pred hh
Q psy9245 131 TK 132 (141)
Q Consensus 131 ~~ 132 (141)
..
T Consensus 192 ~~ 193 (196)
T PRK14732 192 LK 193 (196)
T ss_pred HH
Confidence 43
No 66
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=72.27 E-value=3.6 Score=30.91 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.+++..|.+++.+.+..|+..+.... .+|..-. +.|. +.++++.+++|.++|+.
T Consensus 129 ~~~l~~r~~~~~~~i~~r~~~~~~~~----~~~~~fd--~vi~-n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 129 KRRLRRRGDESEEEIEERLERAEKEF----EHYNEFD--YVIV-NDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHHHTTTHCHHHHHHHHHHHHHHHH----GGGGGSS--EEEE-CSSHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHHH----hHhhcCC--EEEE-CcCHHHHHHHHHHHHHh
Confidence 45667788899999999999887543 3443212 3344 34899999999999875
No 67
>PTZ00088 adenylate kinase 1; Provisional
Probab=68.53 E-value=1.6 Score=34.88 Aligned_cols=39 Identities=8% Similarity=-0.104 Sum_probs=28.0
Q ss_pred ccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 25 SSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 25 ~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
.+|||++.|+..|+.. ++++.+ +++++ |......+++++
T Consensus 92 DGfPRt~~Qa~~l~~~-~~~~~v---i~l~~---~~~~~~~Rl~~R 130 (229)
T PTZ00088 92 DGFPRNLKQCKELGKI-TNIDLF---VNIYL---PRNILIKKLLGR 130 (229)
T ss_pred ecCCCCHHHHHHHHhc-CCCCEE---EEEeC---CHHHHHHHHHcC
Confidence 3499999999999864 567766 67777 666655555543
No 68
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=67.62 E-value=11 Score=30.46 Aligned_cols=84 Identities=12% Similarity=0.025 Sum_probs=52.6
Q ss_pred ccchhhHHhhhC--cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEE
Q psy9245 31 VPLGLDFRNRIG--KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHY 108 (141)
Q Consensus 31 v~q~~~fer~i~--~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~ 108 (141)
++-...||.... -++.+ ++..| |.+... +||..|..-+++.+.+|+.. +.. .+.+....-+
T Consensus 122 ~evPLL~E~~~~~~~~D~i---v~V~a---~~e~ri-----~RL~~R~g~s~eea~~Ri~~--Q~~---~~ek~~~aD~- 184 (244)
T PTZ00451 122 LDAPTLFETKTFTYFVSAS---VVVSC---SEERQI-----ERLRKRNGFSKEEALQRIGS--QMP---LEEKRRLADY- 184 (244)
T ss_pred EEechhhccCchhhcCCeE---EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHh--CCC---HHHHHHhCCE-
Confidence 555667775321 23434 56666 554433 46777766688999999976 222 2333333333
Q ss_pred EEeCC--CCHHHHHHHHHHHHHhhh
Q psy9245 109 QVDAA--KSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 109 ~Ida~--~sieeV~~~I~~~l~~~~ 131 (141)
.|+-+ +++++...++.+++....
T Consensus 185 VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 185 IIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHH
Confidence 35556 899999999998876543
No 69
>KOG3078|consensus
Probab=66.14 E-value=2.6 Score=34.35 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=55.1
Q ss_pred cCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccccc---ccC--------------CCCcHHHHHHHHH
Q psy9245 26 SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPL---IKR--------------SDDNAEALKKRLE 88 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL---~~R--------------~DD~~E~I~kRL~ 88 (141)
+|||.+.|+..+.+.....+.| +.+.| |......++.++++ ++| .|=+-|.+-+|..
T Consensus 100 g~Prt~~qa~~l~~~~~~~d~V---i~l~v---p~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~d 173 (235)
T KOG3078|consen 100 GFPRTVQQAEELLDRIAQIDLV---INLKV---PEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRED 173 (235)
T ss_pred CCCcchHHHHHHHHccCCcceE---EEecC---CHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCcc
Confidence 4999999999999999999988 68888 88877776665422 233 3445666888888
Q ss_pred HHHhhcHHHHHHHhh
Q psy9245 89 SYHKQTTPLVDYYQK 103 (141)
Q Consensus 89 ~Y~~~t~Pvi~~Y~~ 103 (141)
.+.+...--++-|.+
T Consensus 174 D~~e~v~~rL~~y~~ 188 (235)
T KOG3078|consen 174 DKPEVVKKRLKAYKE 188 (235)
T ss_pred ccHHHHHHHHHHHhh
Confidence 888888888887765
No 70
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=64.15 E-value=4.8 Score=30.56 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.7
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
-+..||++++++++...+...+..
T Consensus 145 ~~~~~d~~~~~~~~~~~~~~~~~~ 168 (176)
T PRK09825 145 DIARIDVNHDIENVTEQCRQAVQA 168 (176)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHH
Confidence 488999999998888888777654
No 71
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=59.11 E-value=5.1 Score=29.88 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=20.5
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.+..||++.+++++.+.+...+.+
T Consensus 137 ~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 137 DVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999888753
No 72
>PLN02842 nucleotide kinase
Probab=54.66 E-value=4 Score=36.69 Aligned_cols=39 Identities=5% Similarity=-0.120 Sum_probs=30.0
Q ss_pred cCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 26 SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
+|||+..|+..|+.....++++ ++++| |.+....+++++
T Consensus 83 GfPRt~~Qa~~Le~~~~~PDlV---I~LDv---pdevlleRl~gR 121 (505)
T PLN02842 83 GYPRSFAQAQSLEKLKIRPDIF---ILLDV---PDEILIDRCVGR 121 (505)
T ss_pred CCCCcHHHHHHHHhcCCCCCEE---EEEeC---CHHHHHHHHhcc
Confidence 4999999999999865577777 79999 666666565543
No 73
>PRK00279 adk adenylate kinase; Reviewed
Probab=50.55 E-value=5.6 Score=30.69 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=24.6
Q ss_pred cCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhc
Q psy9245 26 SSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKV 67 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~ 67 (141)
+|||...|+..|+..+. +++.+ ++++| |......++
T Consensus 85 GfPr~~~qa~~l~~~l~~~~~~~~~v---i~l~~---~~~~~~~Rl 124 (215)
T PRK00279 85 GFPRTIPQAEALDEMLKELGIKLDAV---IEIDV---PDEELVERL 124 (215)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCCCEE---EEEEC---CHHHHHHHH
Confidence 49999999999986653 34445 68888 665544333
No 74
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=48.35 E-value=25 Score=27.02 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=40.6
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|..| |.+... .|+..|..-+++.+.+|+..- . |+ +......- +.|+-++++++..+++.+++.
T Consensus 130 i~V~a---~~e~r~-----~Rl~~R~g~s~e~~~~ri~~Q---~-~~-~~k~~~aD-~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 130 WVVDC---SPEQQL-----QRLIKRDGLTEEEAEARINAQ---W-PL-EEKVKLAD-VVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHhC---C-CH-HHHHhhCC-EEEECCCCHHHHHHHHHHHHh
Confidence 56666 554433 466667555778899999752 2 22 22222222 357889999999999988763
No 75
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=47.34 E-value=41 Score=26.42 Aligned_cols=84 Identities=10% Similarity=0.096 Sum_probs=52.1
Q ss_pred ccchhhHHhhh---CcchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCE
Q psy9245 31 VPLGLDFRNRI---GKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLH 107 (141)
Q Consensus 31 v~q~~~fer~i---~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l 107 (141)
++-.+.||... ..++.+ ++..| |.+... .|+..|..-+++.+.+|+..- ....-..-+. .
T Consensus 113 ~eipLL~E~~~~~~~~~D~v---i~V~a---~~e~ri-----~Rl~~Rd~~s~~~a~~ri~~Q--~~~eek~~~a--D-- 175 (204)
T PRK14733 113 VDIPLLGPYNFRHYDYLKKV---IVIKA---DLETRI-----RRLMERDGKNRQQAVAFINLQ--ISDKEREKIA--D-- 175 (204)
T ss_pred EEechhhhccCchhhhCCEE---EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHhC--CCHHHHHHhC--C--
Confidence 44556666432 123334 56666 555443 466677666888999998642 2222222222 2
Q ss_pred EEEeCCC-CHHHHHHHHHHHHHhhh
Q psy9245 108 YQVDAAK-SSREVFNMIDRVFQNCT 131 (141)
Q Consensus 108 ~~Ida~~-sieeV~~~I~~~l~~~~ 131 (141)
..|+-++ +.++..+++..+++++.
T Consensus 176 ~VI~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 176 FVIDNTELTDQELESKLITTINEIT 200 (204)
T ss_pred EEEECcCCCHHHHHHHHHHHHHHHH
Confidence 4578888 99999999999998873
No 76
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=46.40 E-value=39 Score=27.86 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=17.3
Q ss_pred EEEeCCC-CHHHHHHHHHHHHHh
Q psy9245 108 YQVDAAK-SSREVFNMIDRVFQN 129 (141)
Q Consensus 108 ~~Ida~~-sieeV~~~I~~~l~~ 129 (141)
+.||.++ +++++.+.|...+..
T Consensus 279 ~~I~t~~~s~ee~~~~I~~~l~~ 301 (309)
T PRK08154 279 AVVDTSGLTVAQSLARLRELVRP 301 (309)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 3577665 999999999888764
No 77
>PLN02422 dephospho-CoA kinase
Probab=45.17 E-value=28 Score=27.99 Aligned_cols=83 Identities=17% Similarity=0.260 Sum_probs=50.9
Q ss_pred ccchhhHHhhhC-cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 31 VPLGLDFRNRIG-KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 31 v~q~~~fer~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
++-.+.||.... .++.+ ++..| |.+... .||..|..=+.+.+.+|++.-. | .+......- ..
T Consensus 112 ~eipLL~E~~~~~~~D~v---I~V~a---~~e~ri-----~RL~~R~g~s~eea~~Ri~~Q~----~-~eek~~~AD-~V 174 (232)
T PLN02422 112 LDIPLLFETKMDKWTKPV---VVVWV---DPETQL-----ERLMARDGLSEEQARNRINAQM----P-LDWKRSKAD-IV 174 (232)
T ss_pred EEehhhhhcchhhhCCEE---EEEEC---CHHHHH-----HHHHHcCCCCHHHHHHHHHHcC----C-hhHHHhhCC-EE
Confidence 455666774332 23444 67777 555433 4666775556788999983211 1 122233222 46
Q ss_pred EeCCCCHHHHHHHHHHHHHhh
Q psy9245 110 VDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 110 Ida~~sieeV~~~I~~~l~~~ 130 (141)
|+-++++++...++.++++..
T Consensus 175 I~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 175 IDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred EECCCCHHHHHHHHHHHHHHH
Confidence 888899999999999887654
No 78
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=43.60 E-value=37 Score=20.90 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEe
Q psy9245 80 AEALKKRLESYHKQTTPLVDYYQKKGLHYQVD 111 (141)
Q Consensus 80 ~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Id 111 (141)
...++..+..=.+...|+++|+...|......
T Consensus 13 v~~~rd~lg~sRK~ai~lLE~lD~~g~T~R~g 44 (50)
T PF09107_consen 13 VAEFRDLLGLSRKYAIPLLEYLDREGITRRVG 44 (50)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCccHHHHHHHHHHHhccCCEEEeC
Confidence 46678888888999999999999999877654
No 79
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=43.47 E-value=80 Score=25.08 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcHHHHHHHhhcC-CEEEEe-CCCCHHHHHHHHHHHHHhhhh
Q psy9245 84 KKRLESYHKQTTPLVDYYQKKG-LHYQVD-AAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 84 ~kRL~~Y~~~t~Pvi~~Y~~~g-~l~~Id-a~~sieeV~~~I~~~l~~~~~ 132 (141)
+-||.-|. ..-+.+.|+..| .++.+| ++.+.||+++++.++|.++.+
T Consensus 123 kDRL~RFG--fe~le~~~~a~~~eivvv~~~e~~~eELveDlisIltsfs~ 171 (193)
T COG2452 123 KDRLNRFG--FELVEAVCKAHNVEIVVVNQEDKDSEELVEDLVSILTSFSA 171 (193)
T ss_pred cchHhHHh--HHHHHHHHHhcCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 44676676 666777887777 567788 556669999999999887643
No 80
>PRK13947 shikimate kinase; Provisional
Probab=41.05 E-value=62 Score=23.42 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=15.9
Q ss_pred EEe-CCCCHHHHHHHHHH-HHHh
Q psy9245 109 QVD-AAKSSREVFNMIDR-VFQN 129 (141)
Q Consensus 109 ~Id-a~~sieeV~~~I~~-~l~~ 129 (141)
.|| ++.+++++.+.|.+ .+..
T Consensus 146 ~Idt~~~~~~~i~~~I~~~~~~~ 168 (171)
T PRK13947 146 TIDTGDMTIDEVAEEIIKAYLKL 168 (171)
T ss_pred EEECCCCCHHHHHHHHHHHHHhh
Confidence 355 67899999999998 4443
No 81
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=40.91 E-value=37 Score=25.45 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=33.2
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHH
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMID 124 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~ 124 (141)
.|+..|..-+.+.+.+|+.... +..+ +... -=+.|+.++++++...++.
T Consensus 139 ~Rl~~R~~~s~~~~~~r~~~q~----~~~~-~~~~-ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 139 ERLMQRDNLTEEEVQKRLASQM----DIEE-RLAR-ADDVIDNSATLADLVKQLE 187 (188)
T ss_pred HHHHHcCCCCHHHHHHHHHhcC----CHHH-HHHh-CCEEEECCCCHHHHHHHHh
Confidence 5677787778899999998753 2212 1111 1256888999999888764
No 82
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=40.85 E-value=28 Score=27.40 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=33.1
Q ss_pred cccccCCCC-cHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC--CHHHHHHHHHHHHH
Q psy9245 70 EPLIKRSDD-NAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK--SSREVFNMIDRVFQ 128 (141)
Q Consensus 70 ~rL~~R~DD-~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~--sieeV~~~I~~~l~ 128 (141)
.|...|.+. .++.+.+....|. .|...|+ .......||++. +++++++.|...+.
T Consensus 111 ~Rn~~R~~~~~~~~i~~l~~r~e---~p~~~~~-wd~~~~~vd~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 111 RRNIERGEKIPNEVIKDMYEKFD---EPGTKYS-WDLPDLTIDTTKKIDYNEILEEILEISE 168 (249)
T ss_pred HHHHhCCCCCCHHHHHHHHHhhC---CCCCCCC-ccCceEEecCCCCCCHHHHHHHHHHHhh
Confidence 344445433 3556666555554 3333333 224678899887 66899999988764
No 83
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=37.78 E-value=58 Score=24.07 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.4
Q ss_pred EEEEeCC-CCHHHHHHHHHHHH
Q psy9245 107 HYQVDAA-KSSREVFNMIDRVF 127 (141)
Q Consensus 107 l~~Ida~-~sieeV~~~I~~~l 127 (141)
-..||++ .++++..+.|.+.|
T Consensus 153 dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 153 DLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred eEEEECCCCCHHHHHHHHHHhc
Confidence 4678988 47999988887765
No 84
>PRK04182 cytidylate kinase; Provisional
Probab=35.36 E-value=1.4e+02 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=17.3
Q ss_pred EEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 108 YQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 108 ~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
+.||.+ .+++++.+.|...+..
T Consensus 151 ~~idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 151 LVINTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 457765 5999999999988864
No 85
>PRK13949 shikimate kinase; Provisional
Probab=33.99 E-value=1.5e+02 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHHH
Q psy9245 80 AEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDRV 126 (141)
Q Consensus 80 ~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~~ 126 (141)
.+.+...+...++.-.| +|++ .. ..||++. +++++.+.|.+.
T Consensus 126 ~~~~~~~i~~l~~~R~~---~Y~~-ad-~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 126 DEELLDFIIEALEKRAP---FYRQ-AK-IIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred hHHHHHHHHHHHHHHHH---HHHh-CC-EEEECCCCCHHHHHHHHHHh
Confidence 34443344433333333 5655 33 5577554 888998888754
No 86
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=36 Score=24.15 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.6
Q ss_pred CCCCcceeEeehhhhhhhhhcccc
Q psy9245 3 KSNQSHSFIILTQTELIRYNQSSS 26 (141)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~qa~~ 26 (141)
|+--|++||.|| .+|+.-|--+
T Consensus 60 K~m~slRfL~dG--~rI~~dqTP~ 81 (103)
T COG5227 60 KNMSSLRFLFDG--KRIDLDQTPG 81 (103)
T ss_pred cCcceeEEEEcc--eecCCCCChh
Confidence 566799999999 7888777544
No 87
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=33.40 E-value=98 Score=23.08 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 87 LESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 87 L~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
+..+...=.|+-+-+. . +.||++ .+++++.+.|.+.+..
T Consensus 132 ~~~l~~~R~~~Y~~~A--d--~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 132 LEALANERNPLYEEIA--D--VTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHHHHHHhhC--C--EEEECCCCCHHHHHHHHHHHHhh
Confidence 4444444455533332 2 457755 6899999999887753
No 88
>PRK00131 aroK shikimate kinase; Reviewed
Probab=32.71 E-value=59 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.8
Q ss_pred EEEe-CCCCHHHHHHHHHHHHHh
Q psy9245 108 YQVD-AAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 108 ~~Id-a~~sieeV~~~I~~~l~~ 129 (141)
..|| ++.+++++.+.|.+.++.
T Consensus 149 l~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 149 ITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHh
Confidence 3466 678999999999998864
No 89
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=32.66 E-value=24 Score=26.30 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=9.7
Q ss_pred CCEEEEeCCC-CHH
Q psy9245 105 GLHYQVDAAK-SSR 117 (141)
Q Consensus 105 g~l~~Ida~~-sie 117 (141)
..++.|||++ ++.
T Consensus 177 ~~~~vid~~~~~~~ 190 (193)
T cd01673 177 APVLIIDANEADIE 190 (193)
T ss_pred CCEEEEECCccccc
Confidence 5788999987 543
No 90
>PRK13946 shikimate kinase; Provisional
Probab=32.47 E-value=1.2e+02 Score=22.69 Aligned_cols=33 Identities=3% Similarity=-0.022 Sum_probs=23.6
Q ss_pred HHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhh
Q psy9245 100 YYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQ 133 (141)
Q Consensus 100 ~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~ 133 (141)
+|.. .-+.......+++++.+.|...+......
T Consensus 148 ~y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 148 VYAE-ADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred HHHh-CCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 4554 33555567889999999999988765443
No 91
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=30.45 E-value=1.4e+02 Score=21.32 Aligned_cols=57 Identities=7% Similarity=0.201 Sum_probs=33.0
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHH-HHHHHhhc----CC-EEEEeCC-CCHHHHHHHHHHHH
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTP-LVDYYQKK----GL-HYQVDAA-KSSREVFNMIDRVF 127 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~P-vi~~Y~~~----g~-l~~Ida~-~sieeV~~~I~~~l 127 (141)
.|+.+|...+.+...+++..-...-.- ...||... +. =..||.+ -++++ .+.|.+++
T Consensus 107 ~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 107 RRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 466677766777777766644332222 33455331 11 1457755 67888 88887765
No 92
>KOG0707|consensus
Probab=29.06 E-value=50 Score=26.89 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=42.4
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
..||..|-=|+++.+.+|++.-...+.+..+-+..-. .-+|+ ..+++.+.++..++..
T Consensus 164 e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~g~~d~--~~~ns-~~lee~~kel~~~~~~ 221 (231)
T KOG0707|consen 164 EERLRARGTETEESLLKRLKSAEEEFEILENSGSFDL--VIVNS-DRLEEAYKELEIFISS 221 (231)
T ss_pred HHHhhccCcchHHHHHHHHHhhhhhhccccCCccccc--eecCC-CchhhhhhhhhhhhhH
Confidence 4578889899999999999977777777776443221 22344 7789999988876543
No 93
>PHA02436 hypothetical protein
Probab=28.17 E-value=44 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=17.9
Q ss_pred CEEEEeCCCCHHHHHHHHHHHH
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l 127 (141)
.+..+=|++.++|||+++...+
T Consensus 10 iiKE~yGeRkIEEVFeE~YE~~ 31 (52)
T PHA02436 10 IIKETYGERNIEEVFKEAYESF 31 (52)
T ss_pred EeehhhchhhHHHHHHHHHHHh
Confidence 4556789999999999997754
No 94
>PRK05480 uridine/cytidine kinase; Provisional
Probab=27.74 E-value=1.3e+02 Score=22.81 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHh
Q psy9245 114 KSSREVFNMIDRVFQN 129 (141)
Q Consensus 114 ~sieeV~~~I~~~l~~ 129 (141)
++++++.++|.+++++
T Consensus 193 ~~~~~l~~~i~~~~~~ 208 (209)
T PRK05480 193 VAIDILKAKIRQLLEK 208 (209)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3788999998887764
No 95
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=27.55 E-value=60 Score=20.61 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC
Q psy9245 79 NAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK 114 (141)
Q Consensus 79 ~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~ 114 (141)
+...|.+++..=.+...++++++..+|++.+++...
T Consensus 16 S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~ 51 (69)
T PF09012_consen 16 SLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSS 51 (69)
T ss_dssp EHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE-
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCC
Confidence 356678888888899999999999999998887554
No 96
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=27.08 E-value=1.1e+02 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=17.6
Q ss_pred EEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 108 YQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 108 ~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
+.||.+ .+++++.+.|.+.+..
T Consensus 138 ivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 138 LVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred EEEECCCCCHHHHHHHHHHHHhc
Confidence 457765 5999999999998855
No 97
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=27.03 E-value=96 Score=20.84 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 108 YQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 108 ~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
..|+.+++.|+|.+.|..+|..-
T Consensus 14 l~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 14 LVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred EEEecCCCHHHHHHHHHHHHhCC
Confidence 56899999999999999998765
No 98
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=26.77 E-value=71 Score=25.05 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.9
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~ 131 (141)
+|+.+|..++.|.+..|+..-...-. -+.... ..+++++++++..+++...+....
T Consensus 139 eRl~~R~~~~~e~~~~~~~~Q~~~~e----k~~~ad--~vi~n~~~i~~l~~~i~~~~~~~~ 194 (201)
T COG0237 139 ERLMKRDGLDEEDAEARLASQRDLEE----KLALAD--VVIDNDGSIENLLEQIEKLLKELL 194 (201)
T ss_pred HHHHhcCCCCHHHHHHHHHhcCCHHH----HHhhcC--ChhhcCCCHHHHHHHHHHHHHHHH
Confidence 57778988888888888875443322 233323 348999999999999988877653
No 99
>KOG3220|consensus
Probab=24.48 E-value=1.2e+02 Score=24.70 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=40.2
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
+||..|..=+++..++|+..= .|+-+--+... +.||.++++++..+++..+......
T Consensus 141 ~Rl~~Rd~lse~dAe~Rl~sQ----mp~~~k~~~a~--~Vi~Nng~~~~l~~qv~~v~~~~~~ 197 (225)
T KOG3220|consen 141 ERLVERDELSEEDAENRLQSQ----MPLEKKCELAD--VVIDNNGSLEDLYEQVEKVLALLQK 197 (225)
T ss_pred HHHHHhccccHHHHHHHHHhc----CCHHHHHHhhh--eeecCCCChHHHHHHHHHHHHHhcc
Confidence 567778877888999998753 33333333323 4589999999999999987765543
No 100
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=22.96 E-value=78 Score=20.61 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=26.3
Q ss_pred hhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHh
Q psy9245 65 LKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQ 102 (141)
Q Consensus 65 ~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~ 102 (141)
|+.|.. +|..|...--..||..|+..+.|..=...
T Consensus 3 C~~C~~---~~~~Dsl~~S~~rln~YrAlaSpayi~Lt 37 (63)
T PF08344_consen 3 CDECKR---KREEDSLRHSRSRLNTYRALASPAYISLT 37 (63)
T ss_pred Cccccc---hhhhchHHHHHHHHHHHHHHhCHHHHHHc
Confidence 445532 47788888888999999999998765543
No 101
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=21.53 E-value=2.7e+02 Score=19.88 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=37.6
Q ss_pred cCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCC----CCHHHHHHHHHHHH
Q psy9245 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA----KSSREVFNMIDRVF 127 (141)
Q Consensus 74 ~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~----~sieeV~~~I~~~l 127 (141)
.|..=+++..+.+...|....+..+.-|...|..+.+.+. +. .+|..+|...+
T Consensus 50 a~~~lt~~q~~a~t~~F~~aL~~~L~~~~~~h~~vILv~~AVv~Ga-~DIT~eI~~~i 106 (111)
T PF09677_consen 50 ARSSLTPEQVEALTQRFMQALEASLAEYQAEHHVVILVSPAVVSGA-PDITDEIRADI 106 (111)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHhCCC-CCCcHHHHHHH
Confidence 4777889999999999999999999999887754332211 22 35555555443
No 102
>PRK08118 topology modulation protein; Reviewed
Probab=21.16 E-value=60 Score=24.19 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=34.7
Q ss_pred CcchhhhhhhhhhccCCCcchhhhhccccccc----cCCC---CcHH----HHHHHHHHHHhhcHH----HHHHHhhcCC
Q psy9245 42 GKYMRIIILVYLAKGYIQGLQKKLKVTGEPLI----KRSD---DNAE----ALKKRLESYHKQTTP----LVDYYQKKGL 106 (141)
Q Consensus 42 ~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~----~R~D---D~~E----~I~kRL~~Y~~~t~P----vi~~Y~~~g~ 106 (141)
..++.+ +|+++ |......++..+.+. .|.| .++| .+.+=+..|+....| +++-|.....
T Consensus 77 ~~~d~v---i~Ld~---p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~~~~~~~~~~~~~~~ 150 (167)
T PRK08118 77 NAADTI---IFLDI---PRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRPSILKRLNQLSEEKD 150 (167)
T ss_pred HhCCEE---EEEeC---CHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhHHHHHHHHhcCCCCe
Confidence 345555 68877 665555555544332 2322 3344 355556667766666 3333332234
Q ss_pred EEEEeCCCC
Q psy9245 107 HYQVDAAKS 115 (141)
Q Consensus 107 l~~Ida~~s 115 (141)
++.+.+...
T Consensus 151 ~~~l~~~~~ 159 (167)
T PRK08118 151 IVILKSRNE 159 (167)
T ss_pred EEEECCHHH
Confidence 566655443
No 103
>PHA02675 ORF104 fusion protein; Provisional
Probab=20.30 E-value=1.8e+02 Score=20.28 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=25.5
Q ss_pred ccCCCCcHHHHHHHHHHHHhhcHHHHHHHhh
Q psy9245 73 IKRSDDNAEALKKRLESYHKQTTPLVDYYQK 103 (141)
Q Consensus 73 ~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~ 103 (141)
..--+++.|+++.||..-.+...-+++.++.
T Consensus 25 y~ag~~~~esle~RL~~L~k~~~~i~~cC~~ 55 (90)
T PHA02675 25 YAAGAPSKESVEERLVSLLDSYKTITDCCRE 55 (90)
T ss_pred eecCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445789999999999998888888888764
No 104
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=20.29 E-value=2.4e+02 Score=21.85 Aligned_cols=65 Identities=23% Similarity=0.334 Sum_probs=37.8
Q ss_pred hhhhccCCCcchhhhhccc---cccccCCCCc---HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTG---EPLIKRSDDN---AEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMID 124 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~---~rL~~R~DD~---~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~ 124 (141)
+|+++ |.+....++.. ++|.+-.|.. .+...+|.-.|.+. -.+.++++...++|..+|.
T Consensus 99 v~L~~---~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~------------a~~~~~~~~~~~~v~~~i~ 163 (172)
T COG0703 99 VYLDA---PFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV------------ADFIIDTDDRSEEVVEEIL 163 (172)
T ss_pred EEEeC---CHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh------------CcEEecCCCCcHHHHHHHH
Confidence 46666 55554444442 2454444441 24455555555543 2456788877799999998
Q ss_pred HHHHhh
Q psy9245 125 RVFQNC 130 (141)
Q Consensus 125 ~~l~~~ 130 (141)
..+...
T Consensus 164 ~~l~~~ 169 (172)
T COG0703 164 EALEGS 169 (172)
T ss_pred HHHHHh
Confidence 877643
Done!