Query psy9245
Match_columns 141
No_of_seqs 191 out of 1133
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:33:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 99.9 6.9E-28 2.4E-32 191.8 4.5 120 8-129 87-229 (230)
2 3sr0_A Adenylate kinase; phosp 99.9 1.4E-24 4.7E-29 169.0 6.5 112 9-129 77-204 (206)
3 3umf_A Adenylate kinase; rossm 99.9 8.7E-24 3E-28 166.2 8.0 107 7-131 108-215 (217)
4 3tlx_A Adenylate kinase 2; str 99.8 2.6E-21 8.8E-26 152.1 7.6 120 7-128 107-242 (243)
5 3dl0_A Adenylate kinase; phosp 99.8 6.3E-20 2.2E-24 139.8 7.5 122 7-130 78-215 (216)
6 3fb4_A Adenylate kinase; psych 99.8 4.3E-19 1.5E-23 134.9 6.9 121 7-129 78-214 (216)
7 3be4_A Adenylate kinase; malar 99.7 1.5E-16 5.2E-21 122.0 7.8 97 31-127 120-217 (217)
8 1e4v_A Adenylate kinase; trans 99.6 7.3E-16 2.5E-20 117.6 7.9 118 8-127 79-213 (214)
9 1ak2_A Adenylate kinase isoenz 99.6 1.4E-15 4.9E-20 117.7 9.5 101 31-131 131-232 (233)
10 2xb4_A Adenylate kinase; ATP-b 99.6 2.3E-16 7.7E-21 121.9 4.8 97 31-127 114-222 (223)
11 1zd8_A GTP:AMP phosphotransfer 99.5 9E-15 3.1E-19 112.4 7.4 120 8-130 85-215 (227)
12 1aky_A Adenylate kinase; ATP:A 99.5 2.2E-14 7.6E-19 109.6 8.3 98 31-129 120-219 (220)
13 1ukz_A Uridylate kinase; trans 99.2 2.9E-11 9.8E-16 90.6 8.1 97 27-129 104-201 (203)
14 1tev_A UMP-CMP kinase; ploop, 99.2 3.7E-11 1.3E-15 88.3 8.3 97 27-129 94-194 (196)
15 1zak_A Adenylate kinase; ATP:A 99.1 1.2E-10 4E-15 88.9 6.7 94 31-130 117-211 (222)
16 1qf9_A UMP/CMP kinase, protein 99.1 4.3E-10 1.5E-14 82.4 8.1 97 27-129 91-191 (194)
17 2c95_A Adenylate kinase 1; tra 99.0 5.5E-10 1.9E-14 82.5 7.9 97 27-129 96-193 (196)
18 3cm0_A Adenylate kinase; ATP-b 99.0 5E-10 1.7E-14 82.4 6.6 96 27-128 85-185 (186)
19 2bwj_A Adenylate kinase 5; pho 99.0 5.2E-10 1.8E-14 82.8 6.6 97 27-129 99-196 (199)
20 2bbw_A Adenylate kinase 4, AK4 99.0 1.3E-09 4.4E-14 84.6 8.7 87 47-134 153-239 (246)
21 2cdn_A Adenylate kinase; phosp 98.9 2.5E-09 8.5E-14 80.2 5.9 91 27-128 106-200 (201)
22 4eaq_A DTMP kinase, thymidylat 97.9 1.5E-05 5.2E-10 61.7 5.4 93 27-130 127-225 (229)
23 3lw7_A Adenylate kinase relate 97.3 0.00061 2.1E-08 47.9 6.9 100 5-130 76-177 (179)
24 2vp4_A Deoxynucleoside kinase; 97.0 8.8E-05 3E-09 56.8 -0.2 76 43-129 146-224 (230)
25 3v9p_A DTMP kinase, thymidylat 96.9 0.0026 9.1E-08 49.5 7.0 75 43-129 151-226 (227)
26 4tmk_A Protein (thymidylate ki 96.8 0.0016 5.3E-08 50.2 5.1 75 43-130 132-207 (213)
27 4edh_A DTMP kinase, thymidylat 96.8 0.0023 8E-08 49.0 6.1 76 43-130 131-207 (213)
28 3lv8_A DTMP kinase, thymidylat 96.7 0.0031 1.1E-07 49.3 6.0 76 43-130 154-229 (236)
29 1p5z_B DCK, deoxycytidine kina 96.6 0.00059 2E-08 53.0 1.6 75 51-129 179-258 (263)
30 2z0h_A DTMP kinase, thymidylat 96.6 0.0044 1.5E-07 45.0 6.2 72 43-130 121-192 (197)
31 2v54_A DTMP kinase, thymidylat 96.4 0.0043 1.5E-07 45.3 4.9 68 43-130 121-191 (204)
32 4hlc_A DTMP kinase, thymidylat 96.4 0.0041 1.4E-07 47.3 4.9 77 43-130 124-201 (205)
33 2ocp_A DGK, deoxyguanosine kin 96.3 0.00083 2.9E-08 51.3 0.6 77 51-134 154-238 (241)
34 2pbr_A DTMP kinase, thymidylat 96.3 0.012 4.3E-07 42.2 6.9 69 43-129 122-191 (195)
35 2plr_A DTMP kinase, probable t 96.2 0.0028 9.7E-08 46.4 3.1 43 81-130 166-208 (213)
36 2jaq_A Deoxyguanosine kinase; 96.0 0.0064 2.2E-07 44.1 4.3 71 51-130 129-201 (205)
37 2wwf_A Thymidilate kinase, put 95.8 0.018 6E-07 42.3 5.9 71 43-130 130-200 (212)
38 2qor_A Guanylate kinase; phosp 95.7 0.029 1E-06 41.5 6.6 62 69-136 141-203 (204)
39 3tmk_A Thymidylate kinase; pho 95.6 0.051 1.8E-06 41.8 8.0 76 43-130 125-203 (216)
40 3kb2_A SPBC2 prophage-derived 95.5 0.034 1.1E-06 39.1 6.3 71 51-133 99-170 (173)
41 2qt1_A Nicotinamide riboside k 94.8 0.012 4.2E-07 43.4 2.1 70 51-129 134-205 (207)
42 1nks_A Adenylate kinase; therm 94.7 0.17 5.8E-06 35.9 8.0 68 51-127 120-193 (194)
43 3ld9_A DTMP kinase, thymidylat 94.5 0.022 7.6E-07 44.2 3.0 72 43-130 145-216 (223)
44 1cke_A CK, MSSA, protein (cyti 94.4 0.0039 1.3E-07 46.4 -1.5 71 51-129 145-222 (227)
45 2j41_A Guanylate kinase; GMP, 94.3 0.028 9.6E-07 40.9 3.2 56 68-130 132-187 (207)
46 3hjn_A DTMP kinase, thymidylat 93.9 0.065 2.2E-06 40.2 4.4 69 44-129 122-191 (197)
47 1ly1_A Polynucleotide kinase; 93.8 0.041 1.4E-06 38.9 3.0 62 51-130 110-173 (181)
48 1jjv_A Dephospho-COA kinase; P 93.2 0.087 3E-06 38.6 4.1 55 70-130 139-197 (206)
49 1e6c_A Shikimate kinase; phosp 92.9 0.092 3.2E-06 37.1 3.7 70 51-129 98-170 (173)
50 3t61_A Gluconokinase; PSI-biol 92.6 0.16 5.4E-06 37.1 4.8 65 51-131 115-181 (202)
51 1kht_A Adenylate kinase; phosp 92.5 0.34 1.2E-05 34.3 6.4 71 51-127 119-191 (192)
52 3vaa_A Shikimate kinase, SK; s 92.4 0.25 8.5E-06 36.2 5.7 70 51-130 122-196 (199)
53 1via_A Shikimate kinase; struc 92.1 0.29 9.9E-06 34.9 5.5 71 51-132 97-169 (175)
54 1nn5_A Similar to deoxythymidy 91.6 0.27 9.3E-06 35.7 5.0 26 105-130 176-201 (215)
55 3trf_A Shikimate kinase, SK; a 91.5 0.28 9.6E-06 35.0 4.9 75 51-132 102-177 (185)
56 1vht_A Dephospho-COA kinase; s 90.6 0.087 3E-06 39.0 1.4 55 70-130 141-195 (218)
57 2if2_A Dephospho-COA kinase; a 90.5 0.089 3.1E-06 38.4 1.4 53 71-130 140-192 (204)
58 3tr0_A Guanylate kinase, GMP k 90.5 0.21 7.1E-06 36.1 3.4 55 69-130 133-187 (205)
59 3tau_A Guanylate kinase, GMP k 90.2 0.74 2.5E-05 34.0 6.3 59 67-132 133-191 (208)
60 2pt5_A Shikimate kinase, SK; a 89.5 0.43 1.5E-05 33.4 4.3 66 51-130 97-164 (168)
61 2h92_A Cytidylate kinase; ross 89.4 0.085 2.9E-06 39.0 0.5 73 51-128 140-216 (219)
62 2f6r_A COA synthase, bifunctio 89.1 0.16 5.4E-06 39.9 1.9 59 70-134 215-273 (281)
63 1knq_A Gluconate kinase; ALFA/ 88.1 0.34 1.2E-05 34.3 3.0 23 106-128 150-172 (175)
64 1q3t_A Cytidylate kinase; nucl 87.9 0.12 4.2E-06 38.9 0.6 74 51-129 157-234 (236)
65 3nwj_A ATSK2; P loop, shikimat 86.5 0.64 2.2E-05 36.2 4.0 75 51-131 146-238 (250)
66 1zuh_A Shikimate kinase; alpha 86.5 0.37 1.3E-05 33.9 2.4 66 51-127 101-167 (168)
67 3gmt_A Adenylate kinase; ssgci 86.5 0.12 4E-06 40.4 -0.3 39 26-70 93-131 (230)
68 1ltq_A Polynucleotide kinase; 85.4 0.095 3.2E-06 40.7 -1.4 61 51-119 110-173 (301)
69 2iyv_A Shikimate kinase, SK; t 85.4 0.44 1.5E-05 34.0 2.3 42 84-129 126-168 (184)
70 3sr0_A Adenylate kinase; phosp 85.4 0.12 4.3E-06 39.1 -0.7 39 26-70 82-124 (206)
71 1ex7_A Guanylate kinase; subst 85.2 0.78 2.7E-05 34.3 3.7 57 68-129 128-184 (186)
72 3a00_A Guanylate kinase, GMP k 85.0 0.76 2.6E-05 33.2 3.5 56 69-129 129-184 (186)
73 1y63_A LMAJ004144AAA protein; 82.7 1.3 4.4E-05 31.9 3.9 64 70-136 116-181 (184)
74 1uf9_A TT1252 protein; P-loop, 81.6 0.59 2E-05 33.6 1.7 55 70-130 140-194 (203)
75 3lnc_A Guanylate kinase, GMP k 81.6 1.5 5.2E-05 32.5 4.1 58 69-133 155-212 (231)
76 1m7g_A Adenylylsulfate kinase; 80.8 0.13 4.5E-06 38.1 -2.2 38 93-130 164-203 (211)
77 4eun_A Thermoresistant glucoki 78.2 1.1 3.8E-05 32.6 2.2 30 100-130 165-194 (200)
78 1kag_A SKI, shikimate kinase I 76.9 3.1 0.00011 28.9 4.3 28 100-128 143-171 (173)
79 3ake_A Cytidylate kinase; CMP 76.7 1 3.4E-05 32.4 1.6 22 107-128 185-207 (208)
80 2vli_A Antibiotic resistance p 76.6 1.2 4.2E-05 31.3 2.0 22 109-130 150-172 (183)
81 1uj2_A Uridine-cytidine kinase 76.5 0.32 1.1E-05 37.1 -1.2 51 78-131 178-235 (252)
82 3a4m_A L-seryl-tRNA(SEC) kinas 75.7 0.76 2.6E-05 35.3 0.8 68 51-130 104-174 (260)
83 4i1u_A Dephospho-COA kinase; s 71.3 1.9 6.5E-05 32.9 2.1 82 32-130 118-202 (210)
84 1lvg_A Guanylate kinase, GMP k 65.2 5.5 0.00019 29.0 3.5 66 68-137 130-195 (198)
85 3iij_A Coilin-interacting nucl 59.2 8.1 0.00028 27.1 3.4 33 98-132 141-173 (180)
86 1gtv_A TMK, thymidylate kinase 54.1 9.4 0.00032 27.3 3.0 67 51-125 137-209 (214)
87 3fdi_A Uncharacterized protein 53.4 11 0.00038 27.7 3.4 51 79-129 141-198 (201)
88 1s96_A Guanylate kinase, GMP k 51.0 32 0.0011 25.7 5.7 54 70-130 145-198 (219)
89 3be4_A Adenylate kinase; malar 48.5 4.5 0.00015 29.7 0.5 43 8-68 84-130 (217)
90 3hdt_A Putative kinase; struct 48.2 20 0.00069 27.0 4.2 51 79-129 161-218 (223)
91 4e22_A Cytidylate kinase; P-lo 44.3 8.4 0.00029 29.2 1.4 75 51-130 167-245 (252)
92 1e4v_A Adenylate kinase; trans 43.4 6.1 0.00021 28.8 0.5 36 26-67 85-120 (214)
93 2xb4_A Adenylate kinase; ATP-b 42.3 7.1 0.00024 28.8 0.7 36 27-68 85-124 (223)
94 1ak2_A Adenylate kinase isoenz 39.4 8.2 0.00028 28.6 0.7 36 27-68 102-141 (233)
95 3tvt_A Disks large 1 tumor sup 36.2 43 0.0015 26.5 4.5 55 69-132 225-279 (292)
96 1kjw_A Postsynaptic density pr 36.0 64 0.0022 25.3 5.5 52 72-131 232-283 (295)
97 2yvu_A Probable adenylyl-sulfa 33.7 40 0.0014 23.5 3.6 24 106-129 159-183 (186)
98 3tlx_A Adenylate kinase 2; str 30.8 9.6 0.00033 28.7 -0.2 38 26-69 114-155 (243)
99 1z6g_A Guanylate kinase; struc 29.0 65 0.0022 23.5 4.2 57 69-130 152-208 (218)
100 3czq_A Putative polyphosphate 25.8 28 0.00095 28.1 1.7 52 85-136 230-282 (304)
101 1e91_A Paired amphipathic heli 21.8 1.3E+02 0.0044 19.3 4.2 17 113-129 52-68 (85)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.94 E-value=6.9e-28 Score=191.76 Aligned_cols=120 Identities=25% Similarity=0.328 Sum_probs=90.6
Q ss_pred ceeEeehhhhhhhhhccccCcc-----------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccC
Q psy9245 8 HSFIILTQTELIRYNQSSSSDV-----------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKR 75 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr-----------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R 75 (141)
-.||+|| ++++..||+.|.. +++....++|..+|... .+|++||..||||+.+++||.|+++|++|
T Consensus 87 ~g~ILDG--fPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R 164 (230)
T 3gmt_A 87 NGYLFDG--FPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQR 164 (230)
T ss_dssp TCEEEES--CCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CCeEecC--CCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccC
Confidence 3699999 7888888876432 45677777788887643 78999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhcHHHHHHHhhc-----------CCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 76 SDDNAEALKKRLESYHKQTTPLVDYYQKK-----------GLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 76 ~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~-----------g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+||++|+|++||+.|+++|.||++||+++ |+++.|||++++++||++|+++|.+
T Consensus 165 ~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 165 DDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999973 8999999999999999999998865
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.90 E-value=1.4e-24 Score=168.98 Aligned_cols=112 Identities=33% Similarity=0.449 Sum_probs=96.9
Q ss_pred eeEeehhhhhhhhhccccCc---------------ccccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccccc
Q psy9245 9 SFIILTQTELIRYNQSSSSD---------------VEVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPL 72 (141)
Q Consensus 9 ~~~~~~~~~~~~~~qa~~~p---------------r~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL 72 (141)
.||+|| ||++..||+.|. -+++.....+|..++... .+|.+||..||||+ |+++|
T Consensus 77 ~~ilDG--fPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~-------~g~~l 147 (206)
T 3sr0_A 77 NVIFDG--FPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPP-------PGVKV 147 (206)
T ss_dssp CEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCC-------TTCCC
T ss_pred ceEecC--CchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCC-------CCcee
Confidence 599999 888888887642 145667777787787644 78999999999986 46789
Q ss_pred ccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 73 IKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 73 ~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.+|.||++|+|++||+.|+++|.||++||+++|+++.|||++++++||++|+++|..
T Consensus 148 ~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 148 IQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp BCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999863
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.89 E-value=8.7e-24 Score=166.23 Aligned_cols=107 Identities=18% Similarity=0.365 Sum_probs=95.0
Q ss_pred cceeEeehhhhhhhhhccccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHH
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKK 85 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~k 85 (141)
.-.||+|| |||+++|+..|+..+.+++.| ++++| |.+....|++++ .+.+|.||++|+|++
T Consensus 108 ~~g~ilDG------------fPRt~~Qa~~l~~~~~~~~~v---i~l~v---~~e~~~~Rl~~R~~~~~R~DD~~e~i~~ 169 (217)
T 3umf_A 108 NCHFLIDG------------YPRELDQGIKFEKEVCPCLCV---INFDV---SEEVMRKRLLKRAETSNRVDDNEETIVK 169 (217)
T ss_dssp CSEEEEET------------BCSSHHHHHHHHHHTCCCSEE---EEEEC---CHHHHHHHHSCC------CHHHHHHHHH
T ss_pred ccCccccc------------CCCcHHHHHHHHHhCCccCEE---EeccC---CHHHHHHHHhcccccCCCCCCCHHHHHH
Confidence 34699999 999999999999999999888 79999 888888888875 578999999999999
Q ss_pred HHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhh
Q psy9245 86 RLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 86 RL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~ 131 (141)
||+.|+++|.||++||+++|+++.|||++++++||++|.++|++.|
T Consensus 170 Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 170 RFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKFG 215 (217)
T ss_dssp HHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998765
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.84 E-value=2.6e-21 Score=152.13 Aligned_cols=120 Identities=27% Similarity=0.359 Sum_probs=103.5
Q ss_pred cceeEeehhhhhhhhhccccC----------c-c----cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSS----------D-V----EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~----------p-r----~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
...||+|| ++....|+..+ | . .++.....+|..++... .+|++||..||||+.++.|+.|++
T Consensus 107 ~~~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 107 KKGFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp SSEEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred cCCEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 45689999 66666666542 2 1 34566666777776543 789999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 71 rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|.+|.||++|++++||+.|++++.|+++||.++|+++.|||++++++|++.|.++|.
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.80 E-value=6.3e-20 Score=139.76 Aligned_cols=122 Identities=22% Similarity=0.292 Sum_probs=102.9
Q ss_pred cceeEeehhhhhhhhhccccCcc---------------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV---------------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr---------------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
...+++|| ++....|+..+.. .++.....+|..++... .+|..||..||||+.+++|+.|++
T Consensus 78 ~~~~ildg--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3dl0_A 78 ERGFLLDG--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGG 155 (216)
T ss_dssp TTCEEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCEEEeC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccc
Confidence 44688888 5555555544211 35566666777776433 789999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 71 rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|.+|.||++|++++||+.|++.+.|+.+||.++|.++.|||++++++|+++|.++|+..
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 156 ELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp BEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999998753
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.77 E-value=4.3e-19 Score=134.89 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=101.9
Q ss_pred cceeEeehhhhhhhhhccccCcc---------------cccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhcccc
Q psy9245 7 SHSFIILTQTELIRYNQSSSSDV---------------EVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 7 ~~~~~~~~~~~~~~~~qa~~~pr---------------~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
...+++|| ++....|+..+.. .++.....+|..++... .+|..||..||||+.+++|+.|++
T Consensus 78 ~~~~ildg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 155 (216)
T 3fb4_A 78 QKGFLLDG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGG 155 (216)
T ss_dssp TTCEEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred CCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccC
Confidence 34688888 5555555544311 34556666677776433 789999999999999999999999
Q ss_pred ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 71 rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+|.+|.||+++.+++||+.|++.+.|+.+||.+.|.++.|||++++++|+++|.++|..
T Consensus 156 ~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 156 ELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp BEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999875
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.66 E-value=1.5e-16 Score=122.04 Aligned_cols=97 Identities=34% Similarity=0.453 Sum_probs=85.7
Q ss_pred ccchhhHHhhhCcch-hhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 31 VPLGLDFRNRIGKYM-RIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 31 v~q~~~fer~i~~~~-~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
++.....+|..++.. ..+|.+||..||||+.++.|+.|+++|.+|.||+++.|++|+..|++.+.|+++||.+.+.++.
T Consensus 120 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~ 199 (217)
T 3be4_A 120 IDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKR 199 (217)
T ss_dssp CCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 455566666666543 2578999999999999999999999999999999999999999999999999999998889999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q psy9245 110 VDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 110 Ida~~sieeV~~~I~~~l 127 (141)
|||++++++|+++|.++|
T Consensus 200 id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 200 VNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp EETTSCHHHHHHHHHHHC
T ss_pred EECCCCHHHHHHHHHhhC
Confidence 999999999999998754
No 8
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.62 E-value=7.3e-16 Score=117.61 Aligned_cols=118 Identities=30% Similarity=0.400 Sum_probs=95.7
Q ss_pred ceeEeehhhhhhhhhccccC-----------cccccchhhHHhhhCcch-hhhhhhhhhccCCCcchhhhhccccccccC
Q psy9245 8 HSFIILTQTELIRYNQSSSS-----------DVEVPLGLDFRNRIGKYM-RIIILVYLAKGYIQGLQKKLKVTGEPLIKR 75 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~-----------pr~v~q~~~fer~i~~~~-~v~g~ly~~~~npP~~~~~~d~~~~rL~~R 75 (141)
..+++|| ++....|+..+ --+++.+...+|..++.. ..+|..||..|+||+.++.|+.|+++|.+|
T Consensus 79 ~~~i~dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r 156 (214)
T 1e4v_A 79 NGFLLDG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTR 156 (214)
T ss_dssp GCEEEES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCC
T ss_pred CCEEEeC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccC
Confidence 4688888 44444444321 113455666667666543 257888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhcHHHHHHHhhc-----CCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 76 SDDNAEALKKRLESYHKQTTPLVDYYQKK-----GLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 76 ~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~-----g~l~~Ida~~sieeV~~~I~~~l 127 (141)
.||+++.+++|++.|++.+.|+++||.+. +.++.|||++++++|+++|.++|
T Consensus 157 ~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 157 KDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp TTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999876 58999999999999999999876
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.62 E-value=1.4e-15 Score=117.72 Aligned_cols=101 Identities=43% Similarity=0.611 Sum_probs=89.1
Q ss_pred ccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 31 VPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 31 v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
++.....+|..++... .+|..||..|+||..++.|+.|+++|.+|.||+.+.+++|++.|++.+.|+++||.+.+.++.
T Consensus 131 ~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~ 210 (233)
T 1ak2_A 131 IPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSA 210 (233)
T ss_dssp CCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHcCCcCCccCCccccccCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 4555666676665432 678899999999999999999998999999999999999999999999999999998888999
Q ss_pred EeCCCCHHHHHHHHHHHHHhhh
Q psy9245 110 VDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 110 Ida~~sieeV~~~I~~~l~~~~ 131 (141)
|||++++++|+++|.++++..+
T Consensus 211 id~~~~~~~v~~~I~~~l~~~~ 232 (233)
T 1ak2_A 211 IDASQTPDVVFASILAAFSKAT 232 (233)
T ss_dssp EETTSCHHHHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999998653
No 10
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.62 E-value=2.3e-16 Score=121.89 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=85.3
Q ss_pred ccchhhHHhhhCcchh-h-hhhhhhhccCCCcchh-hhhccccccccCCCCcHH-HHHHHHHHHHhhcHHHHH---HHhh
Q psy9245 31 VPLGLDFRNRIGKYMR-I-IILVYLAKGYIQGLQK-KLKVTGEPLIKRSDDNAE-ALKKRLESYHKQTTPLVD---YYQK 103 (141)
Q Consensus 31 v~q~~~fer~i~~~~~-v-~g~ly~~~~npP~~~~-~~d~~~~rL~~R~DD~~E-~I~kRL~~Y~~~t~Pvi~---~Y~~ 103 (141)
++.....+|..++... . +|..||..||||+.++ +|+.|+++|.+|.||++| +|++||+.|++.+.||++ +|.+
T Consensus 114 ~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~ 193 (223)
T 2xb4_A 114 LPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKN 193 (223)
T ss_dssp CCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHT
T ss_pred CCHHHHHHHHHcccCCccccCCccccccCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhh
Confidence 3555666676666432 3 7889999999999988 899999999999999999 999999999999999999 9987
Q ss_pred -----cCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 104 -----KGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 104 -----~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
.+.++.|||++++++|++.|.++|
T Consensus 194 ~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 194 MAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp THHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred hhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 678999999999999999999876
No 11
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.54 E-value=9e-15 Score=112.45 Aligned_cols=120 Identities=26% Similarity=0.375 Sum_probs=95.7
Q ss_pred ceeEeehhhhhhhhhccccCc----------ccccchhhHHhhhCcchh-hhhhhhhhccCCCcchhhhhccccccccCC
Q psy9245 8 HSFIILTQTELIRYNQSSSSD----------VEVPLGLDFRNRIGKYMR-IIILVYLAKGYIQGLQKKLKVTGEPLIKRS 76 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~p----------r~v~q~~~fer~i~~~~~-v~g~ly~~~~npP~~~~~~d~~~~rL~~R~ 76 (141)
..+++|| +..+..|+..+. -+++.....+|..++... .+|..|+..++||..++.|+.|+++|.+|.
T Consensus 85 ~~~vid~--~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~r~ 162 (227)
T 1zd8_A 85 YSWLLDG--FPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQRE 162 (227)
T ss_dssp SCEEEES--CCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCG
T ss_pred CCEEEeC--CCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccCCC
Confidence 4577888 434444543221 134555566666555322 357789999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 77 DDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 77 DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
||+.+.+++|+..|++.+.|+++||.+.+.++.|||+ ++++|+++|.+++...
T Consensus 163 ~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~ 215 (227)
T 1zd8_A 163 DDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTK 215 (227)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988899999999 9999999999998754
No 12
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.53 E-value=2.2e-14 Score=109.57 Aligned_cols=98 Identities=35% Similarity=0.425 Sum_probs=82.4
Q ss_pred ccchhhHHhhhCcch-hhhhhhhhhccCCCcchhhhhcc-ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEE
Q psy9245 31 VPLGLDFRNRIGKYM-RIIILVYLAKGYIQGLQKKLKVT-GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHY 108 (141)
Q Consensus 31 v~q~~~fer~i~~~~-~v~g~ly~~~~npP~~~~~~d~~-~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~ 108 (141)
++.....+|..++.. ..+|..||..||||+.+. |+.| +++|.+|.||+++.+++|++.|++.+.|+++||.+.+.++
T Consensus 120 ~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~-~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~ 198 (220)
T 1aky_A 120 VDDELLVARITGRLIHPASGRSYHKIFNPPKEDM-KDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWA 198 (220)
T ss_dssp CCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTT-BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHhCCCccCccCCccccccCCCcccc-cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 455556666665543 367889999999998875 5555 4689999999999999999999999999999998888999
Q ss_pred EEeCCCCHHHHHHHHHHHHHh
Q psy9245 109 QVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 109 ~Ida~~sieeV~~~I~~~l~~ 129 (141)
.|||++++++|+++|.+.|..
T Consensus 199 ~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 199 GVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp EEETTSCHHHHHHHHHHHHTC
T ss_pred EEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999998853
No 13
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.22 E-value=2.9e-11 Score=90.65 Aligned_cols=97 Identities=19% Similarity=0.349 Sum_probs=82.1
Q ss_pred CcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcC
Q psy9245 27 SDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG 105 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g 105 (141)
+|+.++++..|+....+++.+ +|++| |.+....|+..+ ....|.||+.+.+++|+..|.+...|+.++|...+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~---i~l~~---~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~ 177 (203)
T 1ukz_A 104 FPRKMDQAISFERDIVESKFI---LFFDC---PEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKS 177 (203)
T ss_dssp CCCSHHHHHHHHHHTCCCSEE---EEEEC---CHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHhcCCCCEE---EEEEC---CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 899999999999877766665 78888 777666666543 23457889999999999999999999999998878
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.++.||+++++++|+++|.+++..
T Consensus 178 ~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 178 KVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHhc
Confidence 888999999999999999998864
No 14
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.22 E-value=3.7e-11 Score=88.29 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=78.7
Q ss_pred CcccccchhhHHhhhC---cchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHh
Q psy9245 27 SDVEVPLGLDFRNRIG---KYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQ 102 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~---~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~ 102 (141)
+|+...+...|.+.+. .++.+ +|++| |.+....|+..+ ...+|.||+.+.+.+|+..|.+...|++++|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~---i~l~~---~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~ 167 (196)
T 1tev_A 94 FPRNQDNLQGWNKTMDGKADVSFV---LFFDC---NNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYE 167 (196)
T ss_dssp CCCSHHHHHHHHHHHTTTCEEEEE---EEEEC---CHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcccCCCCEE---EEEEC---CHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8887776666665544 23444 68888 777766666543 34589999999999999999999999999999
Q ss_pred hcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 103 KKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 103 ~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+.+.++.||+++++++|+++|.+.+.+
T Consensus 168 ~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 168 EMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 888888999999999999999998875
No 15
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.11 E-value=1.2e-10 Score=88.89 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=74.5
Q ss_pred ccchhhHHhhhCcch-hhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 31 VPLGLDFRNRIGKYM-RIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 31 v~q~~~fer~i~~~~-~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
++.+...+|..++.. ..+|+.|+..++||..+..+ .+|.+|.||+.+.+++||+.|+..+.|+.++|.. .++.
T Consensus 117 ~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~----~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~ 190 (222)
T 1zak_A 117 VPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIA----SRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVK 190 (222)
T ss_dssp CCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGG----GGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CCHHHHHHHHHcCCcccccCCccccccCCCcccccc----cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEE
Confidence 344555556554432 24567788888888765442 4788999999999999999999999999999974 5889
Q ss_pred EeCCCCHHHHHHHHHHHHHhh
Q psy9245 110 VDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 110 Ida~~sieeV~~~I~~~l~~~ 130 (141)
||+++++++|++.|.+++...
T Consensus 191 Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 191 VQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp EECSSCHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.07 E-value=4.3e-10 Score=82.42 Aligned_cols=97 Identities=20% Similarity=0.280 Sum_probs=79.8
Q ss_pred CcccccchhhHHhhhC---cchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHh
Q psy9245 27 SDVEVPLGLDFRNRIG---KYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQ 102 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~---~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~ 102 (141)
+|+...+...|+..+. .++.+ +|++| |.+....|+..+ ....|.||+.+.+.+|++.|.+...|+.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~v---i~l~~---~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~ 164 (194)
T 1qf9_A 91 FPRNEENNNSWEENMKDFVDTKFV---LFFDC---PEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYN 164 (194)
T ss_dssp CCCSHHHHHHHHHHHTTTCEEEEE---EEEEC---CHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhccCCCCEE---EEEEC---CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888777777765554 45555 78888 777777676653 23478999999999999999999999999998
Q ss_pred hcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 103 KKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 103 ~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
..+.++.||++++++++++.|.+++..
T Consensus 165 ~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 165 KFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 878888999999999999999998875
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.04 E-value=5.5e-10 Score=82.51 Aligned_cols=97 Identities=31% Similarity=0.489 Sum_probs=79.2
Q ss_pred CcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcC
Q psy9245 27 SDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG 105 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g 105 (141)
+|+...+...|+.....++.+ +|++| |.+....|+..+ ....|.|++++.+.+|++.|.....|++++|...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v---i~l~~---~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 169 (196)
T 2c95_A 96 YPREVQQGEEFERRIGQPTLL---LYVDA---GPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFYEKRG 169 (196)
T ss_dssp CCCSHHHHHHHHHHTCCCSEE---EEEEC---CHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcCCCCEE---EEEEC---CHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888887766666655 78888 666666565432 12357788999999999999999999999998878
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.++.||++++++++++.|.+++..
T Consensus 170 ~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 170 IVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHH
Confidence 888999999999999999998864
No 18
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.02 E-value=5e-10 Score=82.43 Aligned_cols=96 Identities=25% Similarity=0.424 Sum_probs=75.0
Q ss_pred CcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHHHHHHHHHHHHhhcHHHHHHH
Q psy9245 27 SDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAEALKKRLESYHKQTTPLVDYY 101 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y 101 (141)
+|+...+...++..+. .++.+ +|++| |.+....|+..+. ..+|.||+++.+.+|++.|.+.+.|+.++|
T Consensus 85 ~~~~~~~~~~l~~~l~~~~~~~~~v---i~l~~---~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~ 158 (186)
T 3cm0_A 85 FPRTLAQAEALDRLLSETGTRLLGV---VLVEV---PEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY 158 (186)
T ss_dssp CCCSHHHHHHHHHHHHHTTEEEEEE---EEEEC---CHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEE---EEEeC---CHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7887777666654332 24445 68888 7666666665432 235889999999999999999999999999
Q ss_pred hhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 102 QKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 102 ~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
...+.++.||+++++++|+++|.+.++
T Consensus 159 ~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 159 EARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp HHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 987888999999999999999998764
No 19
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.01 E-value=5.2e-10 Score=82.83 Aligned_cols=97 Identities=22% Similarity=0.349 Sum_probs=78.1
Q ss_pred CcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccccc-cccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcC
Q psy9245 27 SDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEP-LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG 105 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~r-L~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g 105 (141)
+|+...+...|.+.++.++.+ +|++| |.+....|+..+. ...|.||+.+.+.+|++.|.....|+.++|...+
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~---i~l~~---~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 172 (199)
T 2bwj_A 99 YPREVKQGEEFGRRIGDPQLV---ICMDC---SADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKT 172 (199)
T ss_dssp CCSSHHHHHHHHHHTCCCSEE---EEEEC---CHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhcCCCCEE---EEEEC---CHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888877887766666655 79988 6666665655432 2346777889999999999999999999998877
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
.++.||++++++++++.|.+.+..
T Consensus 173 ~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 173 QLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHH
Confidence 778999999999999999998864
No 20
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.00 E-value=1.3e-09 Score=84.57 Aligned_cols=87 Identities=24% Similarity=0.398 Sum_probs=74.3
Q ss_pred hhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHH
Q psy9245 47 IIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126 (141)
Q Consensus 47 v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~ 126 (141)
.+|+++....++|+....|+.|++++.++.+++.+.+.+||+.|.+...|+++||.+.++++.|||+++ ++|+++|.++
T Consensus 153 lSgrv~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~ 231 (246)
T 2bbw_A 153 PSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTL 231 (246)
T ss_dssp TTTEEEETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHH
T ss_pred CCCCccccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHH
Confidence 345554443667887777888889999999999999999999999999999999999999999999998 9999999999
Q ss_pred HHhhhhhc
Q psy9245 127 FQNCTKQR 134 (141)
Q Consensus 127 l~~~~~~~ 134 (141)
+.+.-...
T Consensus 232 l~~~~~~~ 239 (246)
T 2bbw_A 232 FSNKITPI 239 (246)
T ss_dssp HHTTSCCC
T ss_pred HHhhCCCC
Confidence 98754433
No 21
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.87 E-value=2.5e-09 Score=80.16 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=72.2
Q ss_pred CcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHh
Q psy9245 27 SDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQ 102 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~ 102 (141)
+|+...+...|+..+. .++.+ +|++| |.+....|+..+ +|.||+++.+++|++.|.....|+.++|.
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~v---i~l~~---~~e~~~~Rl~~R---~r~~~~~e~~~~r~~~~~~~~~~~~~~~~ 176 (201)
T 2cdn_A 106 YPRSVEQAKALHEMLERRGTDIDAV---LEFRV---SEEVLLERLKGR---GRADDTDDVILNRMKVYRDETAPLLEYYR 176 (201)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCCCEE---EEEEC---CHHHHHHHHHHH---CCTTCSHHHHHHHHHHHHHHTTTHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHHcC---CCCCCCHHHHHHHHHHHHHhhHHHHHHhc
Confidence 7888888877776443 24445 68888 666655555432 47889999999999999999999999993
Q ss_pred hcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 103 KKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 103 ~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+.++.||+++++++|+++|.+.++
T Consensus 177 --~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 177 --DQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp --TTEEEEECCSCHHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 678899999999999999998764
No 22
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.88 E-value=1.5e-05 Score=61.72 Aligned_cols=93 Identities=9% Similarity=-0.003 Sum_probs=62.3
Q ss_pred Ccccccchh-----hHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHH
Q psy9245 27 SDVEVPLGL-----DFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDY 100 (141)
Q Consensus 27 ~pr~v~q~~-----~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~ 100 (141)
+||.++++. .|+.....++++ +|+++ |.+....|+.++ +-..|.|+..+.+.+|+..+.... .+.
T Consensus 127 ~~r~~~~~~~~~l~~~~~~~~~pd~v---i~L~~---~~e~~~~R~~~R~~~~dr~e~~~~~~~~rv~~~y~~l---~~~ 197 (229)
T 4eaq_A 127 YARGIGVEEVRALNEFAINGLYPDLT---IYLNV---SAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEI---IHN 197 (229)
T ss_dssp CCSCSCHHHHHHHHHHHHTTCCCSEE---EEEEC---CHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH---TTT
T ss_pred hhcCCCHHHHHHHHHHHhcCCCCCEE---EEEeC---CHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHH---HHh
Confidence 888888764 222222355656 78888 666666555542 223466667778888888755443 334
Q ss_pred HhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 101 YQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 101 Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
|. +.++.|||++++++|+++|.+++...
T Consensus 198 ~~--~~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 198 ES--QRFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp CT--TTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CC--CCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 43 57889999999999999999988754
No 23
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00061 Score=47.95 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=63.8
Q ss_pred CCcceeEeehhhhhhhhhccccCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhccccccccCCC--CcHHH
Q psy9245 5 NQSHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSD--DNAEA 82 (141)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~D--D~~E~ 82 (141)
.+...+|+|| + +...+...+.+..+.+..+ +|+++ |.+....++..+ .|.+ .+.+.
T Consensus 76 ~~~~~vi~dg------------~-~~~~~~~~l~~~~~~~~~~---i~l~~---~~~~~~~R~~~R---~~~~~~~~~~~ 133 (179)
T 3lw7_A 76 SNHDLVVFDG------------V-RSLAEVEEFKRLLGDSVYI---VAVHS---PPKIRYKRMIER---LRSDDSKEISE 133 (179)
T ss_dssp CCCSCEEEEC------------C-CCHHHHHHHHHHHCSCEEE---EEEEC---CHHHHHHHHHTC---C----CCCHHH
T ss_pred cCCCeEEEeC------------C-CCHHHHHHHHHHhCCCcEE---EEEEC---CHHHHHHHHHhc---cCCCCcchHHH
Confidence 3445677887 5 6666767777777656555 68888 666555444432 2322 57888
Q ss_pred HHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 83 I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+.+|+..... .++-.|+.... +.||++++++++.++|.+++...
T Consensus 134 ~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 134 LIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 8888854332 23444444333 45888889999999999988753
No 24
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.03 E-value=8.8e-05 Score=56.77 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=39.8
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHH--HHHHHHHHHHhhcHHHHHHH-hhcCCEEEEeCCCCHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAE--ALKKRLESYHKQTTPLVDYY-QKKGLHYQVDAAKSSREV 119 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E--~I~kRL~~Y~~~t~Pvi~~Y-~~~g~l~~Ida~~sieeV 119 (141)
.++++ +|+++ |.+....|+.. | +|.+|+.+ .+.+|++.++.... ..|| ...+.++.|||++++++|
T Consensus 146 ~pD~v---i~Ld~---~~e~~~~Ri~~-R--~r~~e~~~~~~~~~rv~~~~~~~~--~~~~~~~~~~~~vId~~~~~eev 214 (230)
T 2vp4_A 146 QADLI---IYLRT---SPEVAYERIRQ-R--ARSEESCVPLKYLQELHELHEDWL--IHQRRPQSCKVLVLDADLNLENI 214 (230)
T ss_dssp CCSEE---EEEEC---CHHHHHHHHHH-H--CCGGGTTCCHHHHHHHHHHHHHHH--TSCCSSCCCEEEEEECCC-----
T ss_pred CCCEE---EEEeC---CHHHHHHHHHH-c--CCcccccCcHHHHHHHHHHHHHHH--HHhcccCCCCEEEEECCCCHHHH
Confidence 35555 78888 76666656542 2 57666533 68889887777642 1233 445678999999999999
Q ss_pred HHHHHHHHHh
Q psy9245 120 FNMIDRVFQN 129 (141)
Q Consensus 120 ~~~I~~~l~~ 129 (141)
+++|.++++.
T Consensus 215 ~~~I~~~l~~ 224 (230)
T 2vp4_A 215 GTEYQRSESS 224 (230)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 25
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.87 E-value=0.0026 Score=49.47 Aligned_cols=75 Identities=9% Similarity=0.072 Sum_probs=45.5
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFN 121 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~ 121 (141)
.|+++ +|+++ |.+....|+..+.-..|.+.....+.+|+. .|.. +.+.|. +.++.|||++++++|++
T Consensus 151 ~PDl~---I~Ldv---~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~----la~~~~--~~~~vIDa~~s~eeV~~ 218 (227)
T 3v9p_A 151 QPDLT---VLFDV---PPQIASARRGAVRMPDKFESESDAFFARTRAEYLR----RAQEAP--HRFVIVDSSEPIAQIRK 218 (227)
T ss_dssp CCSEE---EEEEC---CSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHH----HHHHhc--CCEEEEeCCCCHHHHHH
Confidence 45555 78888 665555444321111233332345556655 4433 344453 56899999999999999
Q ss_pred HHHHHHHh
Q psy9245 122 MIDRVFQN 129 (141)
Q Consensus 122 ~I~~~l~~ 129 (141)
+|.++++.
T Consensus 219 ~I~~~l~~ 226 (227)
T 3v9p_A 219 QLEGVLAA 226 (227)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998864
No 26
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.80 E-value=0.0016 Score=50.17 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=47.1
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFN 121 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~ 121 (141)
.|+++ +|++| |++....|+..+.-..|.+.......+|+. .|.+.. +.+ +.++.|||++++++|++
T Consensus 132 ~PDl~---i~Ldv---~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la----~~~---~~~~vIDa~~s~eeV~~ 198 (213)
T 4tmk_A 132 RPDLT---LYLDV---TPEVGLKRARARGELDRIEQESFDFFNRTRARYLELA----AQD---KSIHTIDATQPLEAVMD 198 (213)
T ss_dssp CCSEE---EEEEC---CHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHH----HTC---TTEEEEETTSCHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHH----HHC---CcEEEECCCCCHHHHHH
Confidence 45666 79998 766666555432111233332234555555 444322 222 67899999999999999
Q ss_pred HHHHHHHhh
Q psy9245 122 MIDRVFQNC 130 (141)
Q Consensus 122 ~I~~~l~~~ 130 (141)
+|.++++..
T Consensus 199 ~I~~~l~~~ 207 (213)
T 4tmk_A 199 AIRTTVTHW 207 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 27
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.80 E-value=0.0023 Score=49.03 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=48.0
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFN 121 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~ 121 (141)
.|+++ +|+++ |++....|+..+.-..|.+.....+.+|+. .|.. +.+.|. +.++.|||++++++|++
T Consensus 131 ~PDlv---i~Ld~---~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~----l~~~~~--~~~~vIDa~~s~eeV~~ 198 (213)
T 4edh_A 131 RPDLT---LVFDL---PVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQ----RAAQAP--ERYQVLDAGLPLAEVQA 198 (213)
T ss_dssp CCSEE---EEEEC---CHHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHH----HHHHCC--CcEEEEeCCCCHHHHHH
Confidence 45555 78888 666665554432111233332235556655 4543 344554 57899999999999999
Q ss_pred HHHHHHHhh
Q psy9245 122 MIDRVFQNC 130 (141)
Q Consensus 122 ~I~~~l~~~ 130 (141)
+|.++++..
T Consensus 199 ~I~~~l~~~ 207 (213)
T 4edh_A 199 GLDRLLPNL 207 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 28
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.66 E-value=0.0031 Score=49.35 Aligned_cols=76 Identities=20% Similarity=0.132 Sum_probs=44.0
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
.|+++ +|+++ |++....|+..+.-..|.+.....+.+|+...... +.+.| ..++.|||++++++|+++
T Consensus 154 ~PDlv---i~Ldv---~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~---la~~~---~~~~vIDa~~sieeV~~~ 221 (236)
T 3lv8_A 154 KPDLT---LYLDI---DPKLGLERARGRGELDRIEKMDISFFERARERYLE---LANSD---DSVVMIDAAQSIEQVTAD 221 (236)
T ss_dssp CCSEE---EEEEC---CHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHH---HHHHC---TTEEEEETTSCHHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHH---HHHHC---CCEEEEeCCCCHHHHHHH
Confidence 45556 78888 66665544432211112232223556666543322 22233 238999999999999999
Q ss_pred HHHHHHhh
Q psy9245 123 IDRVFQNC 130 (141)
Q Consensus 123 I~~~l~~~ 130 (141)
|.++++..
T Consensus 222 I~~~l~~~ 229 (236)
T 3lv8_A 222 IRRALQDW 229 (236)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 29
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.63 E-value=0.00059 Score=52.96 Aligned_cols=75 Identities=13% Similarity=0.102 Sum_probs=49.3
Q ss_pred hhhhccCCCcchhhhhcccc-c-cc-cCCCCcHHHHHHHHHHHHhh--cHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGE-P-LI-KRSDDNAEALKKRLESYHKQ--TTPLVDYYQKKGLHYQVDAAKSSREVFNMIDR 125 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~-r-L~-~R~DD~~E~I~kRL~~Y~~~--t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~ 125 (141)
+|+++ |.+....|+.++ + .. .+.++..+.+.++++.|.+. +.+...+|.+ +.++.|||++++++|+++|.+
T Consensus 179 i~L~~---~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~-~~~~~Id~~~~~eev~~~I~~ 254 (263)
T 1p5z_B 179 IYLQA---TPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQE-VPILTLDVNEDFKDKYESLVE 254 (263)
T ss_dssp EEEEC---CHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGG-SCEEEEECCSCHHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhcc-CCEEEEECCCCHHHHHHHHHH
Confidence 68888 666665555431 1 11 12334455666677766553 4444555554 668999999999999999999
Q ss_pred HHHh
Q psy9245 126 VFQN 129 (141)
Q Consensus 126 ~l~~ 129 (141)
.+..
T Consensus 255 ~l~~ 258 (263)
T 1p5z_B 255 KVKE 258 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 30
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.62 E-value=0.0044 Score=44.96 Aligned_cols=72 Identities=14% Similarity=0.028 Sum_probs=45.2
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
.++.+ +|++| |++....|+..+ .|.|++ +..+++...|.+. .+.|. +.++.||+++++++++++
T Consensus 121 ~~d~v---i~l~~---~~e~~~~Rl~~R---~~~~~~-~~~~~~~~~~~~~----~~~~~--~~~~~Id~~~~~e~~~~~ 184 (197)
T 2z0h_A 121 IPDLT---FYIDV---DVETALKRKGEL---NRFEKR-EFLERVREGYLVL----AREHP--ERIVVLDGKRSIEEIHRD 184 (197)
T ss_dssp CCSEE---EEEEC---CHHHHHHHC------CCCCCH-HHHHHHHHHHHHH----HHHCT--TTEEEEETTSCHHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHHhcc---CcccHH-HHHHHHHHHHHHH----HHhCC--CCEEEEeCCCCHHHHHHH
Confidence 45555 68888 666655454432 455554 4444444455543 33443 567889999999999999
Q ss_pred HHHHHHhh
Q psy9245 123 IDRVFQNC 130 (141)
Q Consensus 123 I~~~l~~~ 130 (141)
|.++++..
T Consensus 185 i~~~l~~~ 192 (197)
T 2z0h_A 185 VVREVKRR 192 (197)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 99988754
No 31
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.37 E-value=0.0043 Score=45.34 Aligned_cols=68 Identities=9% Similarity=0.090 Sum_probs=45.6
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHH--HHHHHHHH-HHhhcHHHHHHHhhcCCEEEEeCCCCHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAE--ALKKRLES-YHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E--~I~kRL~~-Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV 119 (141)
.++.+ +|+++ |.+.... +|.+|+.+ .+.+|+.. |.+.. +.| .+.++.||+++++++|
T Consensus 121 ~~d~v---i~l~~---~~e~~~~--------~R~~d~~e~~~~~~rl~~~y~~~~----~~~--~~~~~~Id~~~~~~~v 180 (204)
T 2v54_A 121 KPDLV---IFLES---GSKEINR--------NVGEEIYEDVTFQQKVLQEYKKMI----EEG--DIHWQIISSEFEEDVK 180 (204)
T ss_dssp CCSEE---EEECC---CHHHHTT--------CCSSSTTCCSHHHHHHHHHHHHHH----TTC--SSCEEEECTTSCHHHH
T ss_pred CCCEE---EEEeC---CHHHHHh--------hcCcccccHHHHHHHHHHHHHHHH----HhC--CCcEEEEECCCCHHHH
Confidence 44555 68888 5543321 45555555 78888876 54432 122 2567899999999999
Q ss_pred HHHHHHHHHhh
Q psy9245 120 FNMIDRVFQNC 130 (141)
Q Consensus 120 ~~~I~~~l~~~ 130 (141)
+++|.+.+...
T Consensus 181 ~~~i~~~l~~~ 191 (204)
T 2v54_A 181 KELIKNIVIEA 191 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 32
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.36 E-value=0.0041 Score=47.30 Aligned_cols=77 Identities=9% Similarity=0.043 Sum_probs=43.7
Q ss_pred cchhhhhhhhhhccCCCcchhhhhcccc-ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGE-PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFN 121 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~-rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~ 121 (141)
.|+++ +|+++ |++....|+..+ +-..|.+.......+|+...+.. +.+.| .+.++.|||++++++|++
T Consensus 124 ~PDl~---i~Ld~---~~e~~~~Ri~~r~~~~dr~e~~~~~f~~~v~~~Y~~---l~~~~--~~~~~~IDa~~~~e~V~~ 192 (205)
T 4hlc_A 124 YPDLT---IYLNV---SAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQE---IIHNE--SQRFKSVNADQPLENVVE 192 (205)
T ss_dssp CCSEE---EEEEC---CHHHHHHHHHC-------CCHHHHHHHHHHHHHHHH---HHHSC--CTTEEEEETTSCHHHHHH
T ss_pred CCCEE---eeeCC---CHHHHHHHHHhcCCcccchhccCHHHHHHHHHHHHH---HHHhC--CCCEEEEECCCCHHHHHH
Confidence 45666 79988 666665555432 11122222233445555432221 22222 246899999999999999
Q ss_pred HHHHHHHhh
Q psy9245 122 MIDRVFQNC 130 (141)
Q Consensus 122 ~I~~~l~~~ 130 (141)
+|.+.+...
T Consensus 193 ~i~~~i~~~ 201 (205)
T 4hlc_A 193 DTYQTIIKY 201 (205)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887653
No 33
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.00083 Score=51.33 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=48.3
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcH--HHHHHHHHHHHh-----hcHHH-HHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNA--EALKKRLESYHK-----QTTPL-VDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~--E~I~kRL~~Y~~-----~t~Pv-i~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
+|+++ |.+....|+.. | +|.++.. ....+|+...+. .+.|+ +++| ..+.++.|||++++++|++.
T Consensus 154 i~l~~---~~~~~~~R~~~-R--~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~Id~~~~~~~v~~~ 226 (241)
T 2ocp_A 154 IYLQA---SPQVCLKRLYQ-R--AREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLVLDVNDDFSEEVTK 226 (241)
T ss_dssp EEEEC---CHHHHHHHHHH-S--CCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEEEECCSCTTTCHHH
T ss_pred EEEEC---CHHHHHHHHHh-c--CCcccccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEEEECCCChhhCHHH
Confidence 67777 65555545432 1 3444441 334445544333 25554 3456 45789999999999999999
Q ss_pred HHHHHHhhhhhc
Q psy9245 123 IDRVFQNCTKQR 134 (141)
Q Consensus 123 I~~~l~~~~~~~ 134 (141)
+..+++......
T Consensus 227 i~~i~~~i~~~l 238 (241)
T 2ocp_A 227 QEDLMREVNTFV 238 (241)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988775543
No 34
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.27 E-value=0.012 Score=42.23 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=45.9
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHH-HHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRL-ESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFN 121 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL-~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~ 121 (141)
.++.+ +|++| |.+....|+.. | .|.| .++ +.+|+ ..|.+.. .+| +.++.||++++++++++
T Consensus 122 ~~d~v---i~l~~---~~e~~~~Rl~~-r--~~~~-~~~-~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~~~~~ 183 (195)
T 2pbr_A 122 KPDIT---LLLDI---PVDIALRRLKE-K--NRFE-NKE-FLEKVRKGFLELA----KEE---ENVVVIDASGEEEEVFK 183 (195)
T ss_dssp CCSEE---EEEEC---CHHHHHHHHHT-T--TCCC-CHH-HHHHHHHHHHHHH----HHS---TTEEEEETTSCHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHHhhc-c--Cccc-hHH-HHHHHHHHHHHHH----hhC---CCEEEEECCCCHHHHHH
Confidence 34555 78888 66665555542 1 3444 455 55555 5566543 244 46788999999999999
Q ss_pred HHHHHHHh
Q psy9245 122 MIDRVFQN 129 (141)
Q Consensus 122 ~I~~~l~~ 129 (141)
+|.+++..
T Consensus 184 ~i~~~l~~ 191 (195)
T 2pbr_A 184 EILRALSG 191 (195)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998864
No 35
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.20 E-value=0.0028 Score=46.35 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 81 EALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 81 E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+.+.+|+..++.... +.| .++.||+++++++|++.|.+++...
T Consensus 166 ~~~~~r~~~~~~~~~---~~~----~~~~Id~~~~~e~v~~~I~~~l~~~ 208 (213)
T 2plr_A 166 LKYQGLITEVYDKLV---KDE----NFIVIDGTKTPKEIQIQIRKFVGEL 208 (213)
T ss_dssp HHHHHHHHHHHHHHT---TTT----TCEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hhC----CEEEEECCCCHHHHHHHHHHHHHHH
Confidence 467777776554332 122 5788999999999999999988754
No 36
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.05 E-value=0.0064 Score=44.14 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=46.7
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcH--HHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNA--EALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~--E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|++| |.+....|+.. | +|..+.. +...+|+..++.. +.++|.+....+.||+++++++|.++|.+.+.
T Consensus 129 i~L~~---~~e~~~~Rl~~-R--~r~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~ 199 (205)
T 2jaq_A 129 IYLRV---STKTAISRIKK-R--GRSEELLIGEEYWETLNKNYEE---FYKQNVYDFPFFVVDAELDVKTQIELIMNKLN 199 (205)
T ss_dssp EEEEC---CHHHHHHHHHH-H--TCHHHHHSCHHHHHHHHHHHHH---HHHHHTTTSCEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEeC---CHHHHHHHHHH-c--CChhhhcCcHHHHHHHHHHHHH---HHHHccccCcEEEEECCCCHHHHHHHHHHHHH
Confidence 68887 66555545432 1 2322211 2455677665553 56778645678899999999999999999887
Q ss_pred hh
Q psy9245 129 NC 130 (141)
Q Consensus 129 ~~ 130 (141)
..
T Consensus 200 ~~ 201 (205)
T 2jaq_A 200 SI 201 (205)
T ss_dssp HC
T ss_pred Hh
Confidence 54
No 37
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.80 E-value=0.018 Score=42.26 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=44.6
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
.++.+ +|++| |.+....|+.. + ..|.++ +.+.+|+...+....+ ....+.||+++++++++++
T Consensus 130 ~~d~v---i~l~~---~~e~~~~Rl~~-r-~~r~~~--~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~ 192 (212)
T 2wwf_A 130 KPDVV---FYLNV---PPNYAQNRSDY-G-EEIYEK--VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHND 192 (212)
T ss_dssp CCSEE---EEEEC---CTTGGGGSTTT-T-SSTTCS--HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHH
T ss_pred CCCEE---EEEeC---CHHHHHHhhcc-C-cccccH--HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHH
Confidence 44545 68888 55554434321 1 123443 5677888543332221 3557889999999999999
Q ss_pred HHHHHHhh
Q psy9245 123 IDRVFQNC 130 (141)
Q Consensus 123 I~~~l~~~ 130 (141)
|.+.+...
T Consensus 193 i~~~l~~~ 200 (212)
T 2wwf_A 193 IVKEVTKI 200 (212)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHh
Confidence 99998765
No 38
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.66 E-value=0.029 Score=41.48 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=44.4
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHH-HHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhccc
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPL-VDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKD 136 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pv-i~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~ 136 (141)
.+|+..|..++++.|.+||..+.....+. ..+| -++.+|. ++++++++|.++|...-++.|+
T Consensus 141 ~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~~~----d~vi~n~--~~e~~~~~i~~~i~~~~~~~~~ 203 (204)
T 2qor_A 141 LGRLKNRNTEKPEEINKRMQELTREMDEADKVGF----NYFIVND--DLARTYAELREYLLGSYPQLRG 203 (204)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHTC----SEEEECS--SHHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhccC----cEEEECc--CHHHHHHHHHHHHHHHhhccCC
Confidence 35667788788999999999987666552 2333 2344554 8999999999999876655543
No 39
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.59 E-value=0.051 Score=41.77 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=46.9
Q ss_pred cchhhhhhhhh-hccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHH-HHHHhhcCCEEEEe-CCCCHHHH
Q psy9245 43 KYMRIIILVYL-AKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPL-VDYYQKKGLHYQVD-AAKSSREV 119 (141)
Q Consensus 43 ~~~~v~g~ly~-~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pv-i~~Y~~~g~l~~Id-a~~sieeV 119 (141)
.|+++ +|+ ++ |.+....|.-. + ..|.+ + ....+|++..+.....- .. | ..+.++.|| |++++++|
T Consensus 125 ~PDlt---i~L~dv---~pe~~~~R~~~-~-~dr~E-~-~~f~~rvr~~Y~~la~~~~~-~-~~~~~~vID~a~~s~eeV 192 (216)
T 3tmk_A 125 KPDLT---LFLSTQ---DVDNNAEKSGF-G-DERYE-T-VKFQEKVKQTFMKLLDKEIR-K-GDESITIVDVTNKGIQEV 192 (216)
T ss_dssp CCSEE---EEEECS---CCSCGGGCCSS-S-CCTTC-C-HHHHHHHHHHHHHHHHHHHH-T-TCCSEEEEECTTCCHHHH
T ss_pred CCCEE---EEEeCC---CHHHHHHHhcc-C-ccccc-H-HHHHHHHHHHHHHHHHhccc-c-CCCCEEEEeCCCCCHHHH
Confidence 45555 788 88 55554444321 1 12333 2 46777777544443322 22 2 236799999 99999999
Q ss_pred HHHHHHHHHhh
Q psy9245 120 FNMIDRVFQNC 130 (141)
Q Consensus 120 ~~~I~~~l~~~ 130 (141)
+++|.++++..
T Consensus 193 ~~~I~~~i~~~ 203 (216)
T 3tmk_A 193 EALIWQIVEPV 203 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 40
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.55 E-value=0.034 Score=39.13 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=44.3
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
+|+++ |.+....|+.. | +|.....+...+..+.|.+ ....|. ...+.||++ .++++|.++|.+.++.
T Consensus 99 i~l~~---~~e~~~~R~~~-r--~r~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 99 VYLHA---DPSVIKKRLRV-R--GDEYIEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp EEEEC---CHHHHHHHHHH-H--SCSCCCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred EEEeC---CHHHHHHHHHh-c--CCcchhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhC
Confidence 67776 65555444432 1 3443444444444444443 455564 457789999 5999999999999987
Q ss_pred hhhh
Q psy9245 130 CTKQ 133 (141)
Q Consensus 130 ~~~~ 133 (141)
....
T Consensus 167 ~~~~ 170 (173)
T 3kb2_A 167 EHHH 170 (173)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 6443
No 41
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.78 E-value=0.012 Score=43.39 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=43.4
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHH-HHHhhcHHHHHHHhhc-CCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE-SYHKQTTPLVDYYQKK-GLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~-g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|++| |.+....++. .|.-+. +.+..|+. .+.....+.+++|... ..++.||+++++++++++|.+.+.
T Consensus 134 i~l~~---~~~~~~~R~~-----~R~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 134 YFLTI---PYEECKRRRS-----TRVYQP-PDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp EEEEC---CHHHHHHHHH-----HSCCSS-CCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred EEEEC---CHHHHHHHHH-----HcCCCc-cchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 67777 5554443332 332111 22233444 3344445667777765 567889999999999999999876
Q ss_pred h
Q psy9245 129 N 129 (141)
Q Consensus 129 ~ 129 (141)
.
T Consensus 205 ~ 205 (207)
T 2qt1_A 205 Q 205 (207)
T ss_dssp T
T ss_pred h
Confidence 3
No 42
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.66 E-value=0.17 Score=35.95 Aligned_cols=68 Identities=10% Similarity=0.063 Sum_probs=39.1
Q ss_pred hhhhccCCCcchhhhhcccc--ccccCCC-CcHHHHH--HHHHHHHhhcHHHHHHHhhcCCEEEE-eCCCCHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGE--PLIKRSD-DNAEALK--KRLESYHKQTTPLVDYYQKKGLHYQV-DAAKSSREVFNMID 124 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~--rL~~R~D-D~~E~I~--kRL~~Y~~~t~Pvi~~Y~~~g~l~~I-da~~sieeV~~~I~ 124 (141)
+|++| |.+....+.+.. | +|.| ...+.+. .|+..... .....|. ...++.| |+++++++++++|.
T Consensus 120 i~l~~---~~~~~~~rr~~~~~R--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~I~d~~~~~e~v~~~I~ 190 (194)
T 1nks_A 120 FLLEA---DPKIILSRQKRDTTR--NRNDYSDESVILETINFARYAA---TASAVLA-GSTVKVIVNVEGDPSIAANEII 190 (194)
T ss_dssp EEEEC---CHHHHHHHHHHCTTT--CCCCCCSHHHHHHHHHHHHHHH---HHHHHHH-TCEEEEEECCSSCHHHHHHHHH
T ss_pred EEEeC---CHHHHHHHHHhhccc--CCCCccCHHHHHHHHHHHHHHH---HHHHHhc-CCcEEEEeCCCCCHHHHHHHHH
Confidence 68888 554433232211 2 2323 2455443 34443332 3344553 2567889 99999999999998
Q ss_pred HHH
Q psy9245 125 RVF 127 (141)
Q Consensus 125 ~~l 127 (141)
+++
T Consensus 191 ~~l 193 (194)
T 1nks_A 191 RSM 193 (194)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 43
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.48 E-value=0.022 Score=44.16 Aligned_cols=72 Identities=4% Similarity=-0.112 Sum_probs=38.1
Q ss_pred cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 43 KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 43 ~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
.|+++ +|+++ |++....|+ + ..|.+.......+|+...+.. +.+.|. +.++.|||++++++| ++
T Consensus 145 ~PDl~---I~Ldv---~~e~~~~Ri-~---rdr~E~~~~e~~~rv~~~y~~---la~~~~--~~~~vIDa~~sieeV-~~ 208 (223)
T 3ld9_A 145 YPDIT---FIIDV---DINESLSRS-C---KNGYEFADMEFYYRVRDGFYD---IAKKNP--HRCHVITDKSETYDI-DD 208 (223)
T ss_dssp CCSEE---EEEEC---C--------------------CHHHHHHHHHHHHH---HHHHCT--TTEEEEESSCSSSCC-CH
T ss_pred CCCeE---EEEeC---CHHHHHHHh-c---cCccccchHHHHHHHHHHHHH---HHHHCC--CCEEEEcCCCCHHHH-HH
Confidence 45555 78888 555554444 1 123332223455666543322 344453 468999999999999 99
Q ss_pred HHHHHHhh
Q psy9245 123 IDRVFQNC 130 (141)
Q Consensus 123 I~~~l~~~ 130 (141)
|.++++..
T Consensus 209 I~~~l~~~ 216 (223)
T 3ld9_A 209 INFVHLEV 216 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 44
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.36 E-value=0.0039 Score=46.42 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=38.6
Q ss_pred hhhhccCCCcchhhhhccccccc--c---CCCCcHHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLI--K---RSDDNAEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMI 123 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~--~---R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I 123 (141)
+|++| |.+....|... ++. + ..||..+.+.+|+. .|...+.|+..+|.. +.||++ +++++|+++|
T Consensus 145 i~l~~---~~e~~~~R~~~-~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~----~~Id~~~~~~~ev~~~I 216 (227)
T 1cke_A 145 IFLDA---SSEERAHRRML-QLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADA----LVLDSTTLSIEQVIEKA 216 (227)
T ss_dssp EEEEC---CHHHHHHHHHH-HHHHHTCCCCHHHHHHHHC-------------CCCCTTC----EEEETTTSCHHHHHHHH
T ss_pred EEEeC---CHHHHHHHHHH-HHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCE----EEEeCCCCCHHHHHHHH
Confidence 56666 55555545321 121 2 23455666777765 677778888776642 679999 8999999999
Q ss_pred HHHHHh
Q psy9245 124 DRVFQN 129 (141)
Q Consensus 124 ~~~l~~ 129 (141)
.+.+..
T Consensus 217 ~~~l~~ 222 (227)
T 1cke_A 217 LQYARQ 222 (227)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 45
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.34 E-value=0.028 Score=40.91 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=21.7
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+.+|+..|.+++++.+.+|+..+.... ++|...+ ++.+| + ++++++++|.+++...
T Consensus 132 ~~~Rl~~R~~~~~~~~~~rl~~~~~~~----~~~~~~d-~vI~n-~-~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 132 LRERLVGRGTESDEKIQSRINEARKEV----EMMNLYD-YVVVN-D-EVELAKNRIQCIVEAE 187 (207)
T ss_dssp ------------------------CGG----GGGGGCS-EEEEC-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH----hccccCC-EEEEC-C-CHHHHHHHHHHHHHHh
Confidence 346788898888999999999887653 3555444 44344 4 8999999999998765
No 46
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.86 E-value=0.065 Score=40.18 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=40.2
Q ss_pred chhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHH
Q psy9245 44 YMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNM 122 (141)
Q Consensus 44 ~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~ 122 (141)
|+++ +|+++ |++....|... ..|.++ . ...+|++ .|.+ +.+.|. ..++.|||++++++|+++
T Consensus 122 PDl~---i~Ld~---~~e~~~~R~~~---~dr~e~-~-ef~~rv~~~y~~----la~~~~--~~~~~IDa~~~~eeV~~~ 184 (197)
T 3hjn_A 122 PDLT---FYIDV---DVETALKRKGE---LNRFEK-R-EFLERVREGYLV----LAREHP--ERIVVLDGKRSIEEIHRD 184 (197)
T ss_dssp CSEE---EEEEC---CHHHHHHHC------CTTCC-H-HHHHHHHHHHHH----HHHHCT--TTEEEEETTSCHHHHHHH
T ss_pred CCce---eecCc---ChHHHHHhCcC---cCcccc-H-HHHHHHHHHHHH----HHHhCC--CCEEEEcCCCCHHHHHHH
Confidence 4544 67777 55554433211 123333 2 3445544 3433 233332 458899999999999999
Q ss_pred HHHHHHh
Q psy9245 123 IDRVFQN 129 (141)
Q Consensus 123 I~~~l~~ 129 (141)
|.+.+++
T Consensus 185 I~~~i~~ 191 (197)
T 3hjn_A 185 VVREVKR 191 (197)
T ss_dssp HHHHHSC
T ss_pred HHHHHHH
Confidence 9988764
No 47
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.76 E-value=0.041 Score=38.94 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=26.2
Q ss_pred hhhhccCCCcchhhhhccccccccCC--CCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRS--DDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~--DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|++| |.+... .|+..|. +++++.+.+|++.|.... .|. . +.||++.+ ++|...|...+.
T Consensus 110 i~l~~---~~~~~~-----~R~~~R~~~~~~~~~i~~~~~~~~~~~-----~~~--~--~~id~~~~-~~v~~~i~~~l~ 171 (181)
T 1ly1_A 110 KVFDV---PWTELV-----KRNSKRGTKAVPIDVLRSMYKSMREYL-----GLP--V--YNGTPGKP-KAVIFDVDGTLA 171 (181)
T ss_dssp EECCC---CHHHHH-----HHHTTCGGGCCCHHHHHHHHHHHHHHH-----TCC--C--C--------------------
T ss_pred EEEeC---CHHHHH-----HHHhccccCCCCHHHHHHHHHHhhccC-----CCC--c--cccCCCCC-ceeeehhhhhhh
Confidence 67777 555444 3444454 678899999999998762 222 2 23888874 888888887776
Q ss_pred hh
Q psy9245 129 NC 130 (141)
Q Consensus 129 ~~ 130 (141)
..
T Consensus 172 ~~ 173 (181)
T 1ly1_A 172 KM 173 (181)
T ss_dssp --
T ss_pred cc
Confidence 53
No 48
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.19 E-value=0.087 Score=38.59 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=36.8
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHH----HHHHHHHHHHHhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSR----EVFNMIDRVFQNC 130 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sie----eV~~~I~~~l~~~ 130 (141)
.|+..|...+.+.+.+|++. ..|..++|.... +.||.+++++ ++.++|.+++...
T Consensus 139 ~Rl~~R~~~~~e~~~~r~~~----q~~~~~~~~~ad--~vIdn~~~~~~~~~~~~~~i~~~~~~~ 197 (206)
T 1jjv_A 139 ARSAQRDNNNFEQIQRIMNS----QVSQQERLKWAD--DVINNDAELAQNLPHLQQKVLELHQFY 197 (206)
T ss_dssp HHHC-----CHHHHHHHHHH----SCCHHHHHHHCS--EEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHh----cCChHHHHHhCC--EEEECCCCccccHHHHHHHHHHHHHHH
Confidence 45566655578889998875 134555665444 5689888999 9999999888754
No 49
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.87 E-value=0.092 Score=37.05 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=44.6
Q ss_pred hhhhccCCCcchhhhhcc--ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVT--GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVF 127 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~--~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l 127 (141)
+|++| |.+....|+. .+ ...|.....+...+|++.+.....| +|.... +.||++ .+++++.+.|.+.+
T Consensus 98 i~l~~---~~e~~~~R~~~~~r-~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~Id~~~~~~~~~~~~i~~~l 168 (173)
T 1e6c_A 98 VYLFA---PAEELALRLQASLQ-AHQRPTLTGRPIAEEMEAVLREREA---LYQDVA--HYVVDATQPPAAIVCELMQTM 168 (173)
T ss_dssp EEEEC---CHHHHHHHHHHHHC-SCCCCCTTHHHHHHHHHHHHHHHHH---HHHHHC--SEEEETTSCHHHHHHHHHHHT
T ss_pred EEEEC---CHHHHHHHHhhccC-CCCCCcCCCCCHHHHHHHHHHHHHH---HHHhCc--EEEECCCCCHHHHHHHHHHHh
Confidence 56666 5555544443 21 1124444445667788887776665 344322 468988 89999999999887
Q ss_pred Hh
Q psy9245 128 QN 129 (141)
Q Consensus 128 ~~ 129 (141)
..
T Consensus 169 ~~ 170 (173)
T 1e6c_A 169 RL 170 (173)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 50
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.59 E-value=0.16 Score=37.13 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=41.0
Q ss_pred hhhhccCCCcchhhhhccccccccCCC--CcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSD--DNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~D--D~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|++| |.+.... |+.+|.. +..+.+...++.+.. + |. ....+.||++++++++.++|.+.|.
T Consensus 115 i~l~~---~~e~~~~-----Rl~~R~~~~~~~~~~~~~~~~~~~----~---~~-~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 115 VFLHG---SESVLAE-----RMHHRTGHFMPSSLLQTQLETLED----P---RG-EVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp EEEEC---CHHHHHH-----HHHHHHSSCCCHHHHHHHHHHCCC----C---TT-STTEEEEESSSCHHHHHHHHHHHHH
T ss_pred EEEeC---CHHHHHH-----HHHHhhccCCCHHHHHHHHHhcCC----C---CC-CCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 67777 5554443 4444432 235566665555432 1 22 2346789999999999999999987
Q ss_pred hhh
Q psy9245 129 NCT 131 (141)
Q Consensus 129 ~~~ 131 (141)
..+
T Consensus 179 ~~~ 181 (202)
T 3t61_A 179 RLA 181 (202)
T ss_dssp HHH
T ss_pred Hhh
Confidence 653
No 51
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.52 E-value=0.34 Score=34.35 Aligned_cols=71 Identities=10% Similarity=0.051 Sum_probs=41.3
Q ss_pred hhhhccCCCcchhhh-hccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEE-eCCCCHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKL-KVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQV-DAAKSSREVFNMIDRVF 127 (141)
Q Consensus 51 ly~~~~npP~~~~~~-d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~I-da~~sieeV~~~I~~~l 127 (141)
+|++| |.+.... |+... ..+|..++.+.+..+.+.+... .+....|.. ..++.| |++++++++++.|.+++
T Consensus 119 i~l~~---~~~~~~~rRl~~~-~R~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 119 IVVET---TGDEILMRRMSDE-TRVRDLDTASTIEQHQFMNRCA-AMSYGVLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp EEEEC---CHHHHHHHHHTSS-SCSSSCCCHHHHHHHHHHHHHH-HHHHHHHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEeC---CHHHHHHHHhhhc-ccCCCcCCHHHHHHHHHHHHHH-HHHHHHhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 56766 5544432 33221 0245666777777766654443 334444533 334555 66677999999998876
No 52
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.44 E-value=0.25 Score=36.19 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=48.4
Q ss_pred hhhhccCCCcchhhhhcc-ccccccC---CCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVT-GEPLIKR---SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDR 125 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~-~~rL~~R---~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~ 125 (141)
+|++| |.+....|+. .. ..| .+++.+.+..+++.+.+...| +|.. .-+.||+++ +++++.++|.+
T Consensus 122 i~L~~---~~e~l~~Rl~~~~--~~Rp~~~~~~~~~~~~~i~~~~~~r~~---~y~~--ad~~Idt~~~s~ee~~~~I~~ 191 (199)
T 3vaa_A 122 VFLNV---HPDVLFRRLRIAK--QQRPILQGKEDDELMDFIIQALEKRAP---FYTQ--AQYIFNADELEDRWQIESSVQ 191 (199)
T ss_dssp EEEEC---CHHHHHHHHHHTG--GGCGGGTTCCHHHHHHHHHHHHHHHHH---HHTT--SSEEEECCCCSSHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHhcCC--CCCCCcCCCChhhHHHHHHHHHHHHHH---HHhh--CCEEEECCCCCHHHHHHHHHH
Confidence 57777 6666555554 21 123 356777888888888877776 5554 235688887 99999999998
Q ss_pred HHHhh
Q psy9245 126 VFQNC 130 (141)
Q Consensus 126 ~l~~~ 130 (141)
.+...
T Consensus 192 ~l~~~ 196 (199)
T 3vaa_A 192 RLQEL 196 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 53
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.05 E-value=0.29 Score=34.86 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=38.0
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCc-HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDN-AEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~-~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~ 128 (141)
+|+++ |.+....|+..+....|++.. .+.+...+. . ...+|.... .+.||++ .++++|.+.|.+.+.
T Consensus 97 i~l~~---~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~----~---r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 97 IYLKA---DFEYLKKRLDKDEISKRPLFYDEIKAKKLYN----E---RLSKYEQKA-NFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp EEEEC---CHHHHTTCCCGGGTTTSCTTCCHHHHHHHHH----H---HHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC
T ss_pred EEEeC---CHHHHHHHHhcccCCCCCCcccHHHHHHHHH----H---HHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 56666 554444343321102455554 444443322 2 224564322 4679999 799999999999987
Q ss_pred hhhh
Q psy9245 129 NCTK 132 (141)
Q Consensus 129 ~~~~ 132 (141)
.-++
T Consensus 166 ~~~~ 169 (175)
T 1via_A 166 EGGS 169 (175)
T ss_dssp ----
T ss_pred hcCc
Confidence 6655
No 54
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.59 E-value=0.27 Score=35.70 Aligned_cols=26 Identities=27% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 105 GLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 105 g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+.++.||+++++++++++|.+++...
T Consensus 176 ~~~~~Id~~~~~e~~~~~i~~~l~~~ 201 (215)
T 1nn5_A 176 LNWKMVDASKSIEAVHEDIRVLSEDA 201 (215)
T ss_dssp SCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 45788999999999999999888754
No 55
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.49 E-value=0.28 Score=35.01 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=43.3
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHHHHHh
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDRVFQN 129 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~~l~~ 129 (141)
+|++| |.+....|+....-..|+..+.+....+++.....-.|+-..|. . +.||++. +++++.+.|.+.+..
T Consensus 102 i~L~~---~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~a--d--~~Idt~~~~~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 102 IYLTA---SIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMA--D--LVYPTDDLNPRQLATQILVDIKQ 174 (185)
T ss_dssp EEEEC---CHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHC--S--EEEECTTCCHHHHHHHHHHHSCC
T ss_pred EEEEC---CHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcC--C--EEEECCCCCHHHHHHHHHHHHHH
Confidence 56666 55555545421111246655555455666665555555443332 2 5688887 899999999998876
Q ss_pred hhh
Q psy9245 130 CTK 132 (141)
Q Consensus 130 ~~~ 132 (141)
.-+
T Consensus 175 ~~~ 177 (185)
T 3trf_A 175 TYS 177 (185)
T ss_dssp ---
T ss_pred Hhh
Confidence 543
No 56
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.60 E-value=0.087 Score=39.04 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=35.5
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.|+..|...+.+.+.+|+... .+...++.... +.||++++++++.+.|.+++...
T Consensus 141 ~Rl~~R~~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 141 KRTMQRDDVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp HHHHHHHTCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 344455445677788887752 12233333333 56899999999999998887643
No 57
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.55 E-value=0.089 Score=38.40 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=36.2
Q ss_pred ccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 71 rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
|+..| .-+.+.+.+|++... |...|+.... +.||++++++++.++|.+.+...
T Consensus 140 Rl~~R-~~~~~~~~~~~~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~~ 192 (204)
T 2if2_A 140 RAIKR-GMSEEDFERRWKKQM----PIEEKVKYAD--YVIDNSGSIEETYKQVKKVYEEL 192 (204)
T ss_dssp HHHHT-CCCHHHHHHHHTTSC----CHHHHGGGCS--EECCCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHc-CCCHHHHHHHHHhCC----ChhHHHhcCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 44445 345667788877643 3345555444 45899999999999999988754
No 58
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.46 E-value=0.21 Score=36.15 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=40.7
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.+||..|..++++.+.+||..+... ++++..-. ++.+|. +++++++++.+++...
T Consensus 133 ~~Rl~~R~~~~~~~i~~rl~~~~~~----~~~~~~~d-~vi~n~--~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 133 RERLIKRRQDDTAIIEQRLALAREE----MAHYKEFD-YLVVND--NFDQAVQNLIHIISAE 187 (205)
T ss_dssp HHHHHTCTTSCSSTHHHHHHHHHHH----HTTGGGCS-EEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH----HhcccCCC-EEEECC--CHHHHHHHHHHHHHHH
Confidence 4577788888999999999988543 45554433 334444 8999999999998754
No 59
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.20 E-value=0.74 Score=34.00 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=36.5
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 67 ~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
.+..||..|..|+++.+.+||....... .++..-. ++.+|. ++++..++|.+++....+
T Consensus 133 ~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~----~~~~~~d-~vivN~--~~~~~~~~l~~~i~~~~~ 191 (208)
T 3tau_A 133 ELKNRIIGRGTESMEVVEERMETAKKEI----EMMASYD-YAVVND--VVANAVQKIKGIVETEHL 191 (208)
T ss_dssp TSSCC-------CCHHHHHHHHHHHHHH----HHGGGSS-EEEECS--SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH----HhhccCC-EEEECc--CHHHHHHHHHHHHHHHHH
Confidence 3456888898889999999999887543 3333222 445664 699999999999986543
No 60
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.52 E-value=0.43 Score=33.39 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=38.8
Q ss_pred hhhhccCCCcchhhhhccccccccCCC--CcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSD--DNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~D--D~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
+|++| |.+....|+..++ .|.. +..+.++.++... . .+|.. .-++. |++.+++++.+.|.+.+.
T Consensus 97 i~l~~---~~e~~~~R~~~r~--~r~~~~~~~~~i~~~~~~~----~---~~~~~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 97 VFIDI---PFEVFLERCKDSK--ERPLLKRPLDEIKNLFEER----R---KIYSK-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp EEEEC---CHHHHHHHCBCTT--CCBGGGSCGGGTHHHHHHH----H---HHHTT-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHhCCC--CCCCCcchHHHHHHHHHHH----H---HHHHh-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 56766 6555544443321 2433 3344555554322 2 34654 44555 888999999999999887
Q ss_pred hh
Q psy9245 129 NC 130 (141)
Q Consensus 129 ~~ 130 (141)
..
T Consensus 163 ~~ 164 (168)
T 2pt5_A 163 GN 164 (168)
T ss_dssp TS
T ss_pred hc
Confidence 53
No 61
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.36 E-value=0.085 Score=38.95 Aligned_cols=73 Identities=18% Similarity=0.148 Sum_probs=43.7
Q ss_pred hhhhccCCCcchhhhhccccccccCC-CCcHHHHHHHHHH--HHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRS-DDNAEALKKRLES--YHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDRV 126 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~-DD~~E~I~kRL~~--Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~~ 126 (141)
+|+.| |.+....|++. ++..|. +++.+.+.+|++. |...+.++..+|.. .-.+.||+++ +++++.+.|.+.
T Consensus 140 i~l~a---~~e~~~~R~~~-~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~~~~ee~~~~I~~~ 214 (219)
T 2h92_A 140 VYMIA---SVEERAERRYK-DNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTGKSIEEVTDEILAM 214 (219)
T ss_dssp EEEEC---CHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTTCCHHHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHHH-HHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCCCCHHHHHHHHHHH
Confidence 55655 55554444432 122343 3467778888863 33343344445543 2346788885 999999999988
Q ss_pred HH
Q psy9245 127 FQ 128 (141)
Q Consensus 127 l~ 128 (141)
+.
T Consensus 215 l~ 216 (219)
T 2h92_A 215 VS 216 (219)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 62
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.06 E-value=0.16 Score=39.92 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=39.5
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhc
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQR 134 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~ 134 (141)
.|+..|...+++.+.+|+... .+..+++.... +.||++++++++.++|.+++.......
T Consensus 215 ~Rl~~R~g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s~eel~~~I~~~l~~l~~~~ 273 (281)
T 2f6r_A 215 RRIVERDGLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWESHVTQSQVEKAWNLLQKRL 273 (281)
T ss_dssp HHHHHHHCCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455444677888887765 23344544333 458999999999999999988664443
No 63
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.06 E-value=0.34 Score=34.32 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=20.3
Q ss_pred CEEEEeCCCCHHHHHHHHHHHHH
Q psy9245 106 LHYQVDAAKSSREVFNMIDRVFQ 128 (141)
Q Consensus 106 ~l~~Ida~~sieeV~~~I~~~l~ 128 (141)
..+.||++++++++.++|.+.+.
T Consensus 150 ~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 150 DVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp TEEEEECSSCHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHHh
Confidence 46889999999999999998875
No 64
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.93 E-value=0.12 Score=38.95 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=43.0
Q ss_pred hhhhccCCCcchhhhhccccccccCC-CCcHHHHHHHHH--HHHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRS-DDNAEALKKRLE--SYHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDRV 126 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~-DD~~E~I~kRL~--~Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~~ 126 (141)
+|++| |.+....|++. ++..|. ..+.+.+.+++. .+.....++..+|.... .+.||+++ +++++.+.|.++
T Consensus 157 i~L~a---~~e~~~~R~~~-~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d-~~vId~~~~s~eev~~~I~~~ 231 (236)
T 1q3t_A 157 IFLVA---SVDERAERRYK-ENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAED-AVYLDTTGLNIQEVVEKIKAE 231 (236)
T ss_dssp EEEEC---CHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTT-CEEEECSSCCHHHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCC-EEEEcCCCCCHHHHHHHHHHH
Confidence 56666 55444444321 123444 345666666665 34444443434454322 36789885 999999999988
Q ss_pred HHh
Q psy9245 127 FQN 129 (141)
Q Consensus 127 l~~ 129 (141)
+..
T Consensus 232 l~~ 234 (236)
T 1q3t_A 232 AEK 234 (236)
T ss_dssp HHH
T ss_pred HHh
Confidence 763
No 65
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.55 E-value=0.64 Score=36.22 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred hhhhccCCCcchhhhhccc-----ccccc--CCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEE----------e-C
Q psy9245 51 VYLAKGYIQGLQKKLKVTG-----EPLIK--RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQV----------D-A 112 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~-----~rL~~--R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~I----------d-a 112 (141)
+|+.+ |.+....|+.. ++|.. +.+|+.+....++....+.-.|+ |.....++.+ | .
T Consensus 146 V~L~a---~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l---Y~~ad~vi~~~~~~~~~~~iDTs 219 (250)
T 3nwj_A 146 IWLDV---PLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA---YTKASARVSLENITLKLGYRSVS 219 (250)
T ss_dssp EEEEC---CHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH---HTTSSEEEEHHHHHHHHTCSSGG
T ss_pred EEEEC---CHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH---HhhCCEEEEecccccccccccCC
Confidence 67777 66666666542 23332 45677777788888888888875 6555555433 3 4
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy9245 113 AKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 113 ~~sieeV~~~I~~~l~~~~ 131 (141)
..++++|.+.|.+.+...-
T Consensus 220 ~~s~eev~~~I~~~i~~~~ 238 (250)
T 3nwj_A 220 DLTPAEIAIEAFEQVQSYL 238 (250)
T ss_dssp GCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 5799999999999887653
No 66
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.48 E-value=0.37 Score=33.95 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=33.0
Q ss_pred hhhhccCCCcchhhhhccccccccCCCCc-HHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRSDDN-AEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~DD~-~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l 127 (141)
+|+.| |.+....|+..+....|.+.+ .+.+.+++.. -.| +|.... -+.||++++++++.+.|.+.+
T Consensus 101 i~l~~---~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~----r~~---~~~~~a-~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 101 FYLKM---DFETLIKRLNQKEREKRPLLNNLTQAKELFEK----RQA---LYEKNA-SFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp EEEEC---CHHHHHHHHCC--------CCTTHHHHHHHHH----HHH---HHHHTC-SEEEEGGGCHHHHHHHHHHC-
T ss_pred EEEEC---CHHHHHHHHhccCCCCCCCccCHHHHHHHHHH----HHH---HHHHHC-CEEEECCCCHHHHHHHHHHHh
Confidence 57776 555555444432101233322 4444444332 223 454322 245888889999999998754
No 67
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.46 E-value=0.12 Score=40.42 Aligned_cols=39 Identities=3% Similarity=-0.111 Sum_probs=31.2
Q ss_pred cCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 26 SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
+|||.+.|+..|+.....++.| +|++| |.+....|+.++
T Consensus 93 GfPRt~~Qa~~L~~~~~~~d~V---I~Ldv---p~e~l~~Rl~~R 131 (230)
T 3gmt_A 93 GFPRTIAQADAMKEAGVAIDYV---LEIDV---PFSEIIERMSGR 131 (230)
T ss_dssp SCCCSHHHHHHHHHTTCCCSEE---EEECC---CHHHHHHHHHTE
T ss_pred CCCCcHHHHHHHHHhCCCccEE---EEEeC---CHHHHHHHHHcC
Confidence 4999999999999766677777 79999 877777676654
No 68
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.42 E-value=0.095 Score=40.68 Aligned_cols=61 Identities=10% Similarity=-0.066 Sum_probs=36.4
Q ss_pred hhhhccCCCcchhhhhccccccccCC--CCcHHHHHHHHHHHHhhcHHH-HHHHhhcCCEEEEeCCCCHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRS--DDNAEALKKRLESYHKQTTPL-VDYYQKKGLHYQVDAAKSSREV 119 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~--DD~~E~I~kRL~~Y~~~t~Pv-i~~Y~~~g~l~~Ida~~sieeV 119 (141)
+|++| |.+... +|+..|. +++++.|++|++.|+....+. ............+|.+++++++
T Consensus 110 i~l~~---~~e~~~-----~R~~~R~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 110 KVFDV---PWTELV-----KRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp EECCC---CHHHHH-----HHHHHCGGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred EEEEC---CHHHHH-----HHHHhccCCCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCcccc
Confidence 68877 555544 3444453 567899999999998765432 0001112245667877776543
No 69
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.40 E-value=0.44 Score=34.02 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=27.7
Q ss_pred HHHHHHHHhhcHHHHHHHhhcCCEEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 84 KKRLESYHKQTTPLVDYYQKKGLHYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 84 ~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
..+++.+.....| +|.... .+.||++ .+++++.+.|.+.+..
T Consensus 126 ~~~i~~~~~~r~~---~~~~~~-~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 126 AEKYRALMAKRAP---LYRRVA-TMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp HHHHHHHHHHHHH---HHHHHC-SEEEECSSSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHH---HHhccC-CEEEECCCCCHHHHHHHHHHHHhh
Confidence 3455555544444 454433 3578988 7999999999887753
No 70
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.36 E-value=0.12 Score=39.09 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=29.7
Q ss_pred cCcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhcccc
Q psy9245 26 SSDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVTGE 70 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~~~ 70 (141)
+|||.+.|+..|+..+. +++.| ++++| |.+..+.|++++
T Consensus 82 GfPRt~~Qa~~l~~~l~~~~~~~~~v---i~l~v---~~e~l~~Rl~~R 124 (206)
T 3sr0_A 82 GFPRTVKQAEALDEMLEKKGLKVDHV---LLFEV---PDEVVIERLSGR 124 (206)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCCCCEE---EEEEC---CHHHHHHHHHTE
T ss_pred CCchhHHHHHHHHhhHHHhcccccee---eecCC---CHHHHHHHHhCC
Confidence 49999999999986654 34556 78888 887777676654
No 71
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.15 E-value=0.78 Score=34.27 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=39.2
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
+..||.+|..|+++.|.+||........-- +...=-.+.|| .+.++-+++|.++|..
T Consensus 128 L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~---~~~~fD~vIvN--ddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 128 LKKRLEGRGTETEESINKRLSAAQAELAYA---ETGAHDKVIVN--DDLDKAYKELKDFIFA 184 (186)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---TTTCSSEEEEC--SSHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhc---cccCCcEEEEC--cCHHHHHHHHHHHHHh
Confidence 346888999999999999999887654311 11010134455 4689999999988753
No 72
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.01 E-value=0.76 Score=33.20 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=16.6
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~ 129 (141)
..||..|..++++.+++||.......... |...--++.+|. +.++..+++.+++..
T Consensus 129 ~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~---~~~~~d~vi~nd--~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 129 KKRLEGRGTETEESINKRLSAAQAELAYA---ETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp ---------------------------------CCCCSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhh---cccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 46788999999999999999887653221 111122444554 789999999988854
No 73
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.73 E-value=1.3 Score=31.89 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=36.5
Q ss_pred cccccCCCCcHHHHHHHHH-H-HHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhccc
Q psy9245 70 EPLIKRSDDNAEALKKRLE-S-YHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKD 136 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~-~-Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~ 136 (141)
.|+..|.- +.+.+..++. . +.....+-...|.. ..++.+| +.+++++.+.+.++++......++
T Consensus 116 ~Rl~~R~~-~~~~~~~~~~~q~~~~l~~~~~~~y~~-~~vi~~n-~~~~~~~~~~v~~i~~~l~~~~~~ 181 (184)
T 1y63_A 116 ERLTKRQY-SEAKRAENMEAEIQCICEEEARDAYED-DIVLVRE-NDTLEQMAATVEEIRERVEVLKVE 181 (184)
T ss_dssp HHHHHTTC-CHHHHHHHHHHHHTTHHHHHHHHHSCG-GGEEEEE-CSSHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCCC-ChhhhHhhHHHHHHHHHHHHHHHHhcc-CcEEECC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 45555632 3444455553 2 34444556667763 4444444 578999988888887766555544
No 74
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.63 E-value=0.59 Score=33.55 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=34.8
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.|+..|..-+.+.+.+|+.... +...++.... +.||++++++++.+.|.+++...
T Consensus 140 ~R~~~R~~~~~~~~~~~i~~~~----~~~~~~~~ad--~vId~~~~~~~~~~~i~~~~~~~ 194 (203)
T 1uf9_A 140 RRVMARSGLSREEVLARERAQM----PEEEKRKRAT--WVLENTGSLEDLERALKAVLAEL 194 (203)
T ss_dssp HHHHTTTCCTTHHHHHHHTTSC----CHHHHHHHCS--EEECCSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCHHHHHHHHHHCC----ChhHHHHhCC--EEEECCCCHHHHHHHHHHHHHHH
Confidence 3444564334556777776521 2233333333 36899999999999999988754
No 75
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.62 E-value=1.5 Score=32.53 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=28.2
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQ 133 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~ 133 (141)
.+||..|..++++.+++||+..... ++++.. .-++.+|. +++++.+++.+++.....+
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~~~~----~~~~~~-~d~vI~n~--~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGAAFE----ISHCEA-YDYVIVNE--DIEETADRISNILRAEQMK 212 (231)
T ss_dssp HHC--------------CHHHHHHH----HTTGGG-SSEEEECS--SHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH----HhhhcC-CeEEEECc--CHHHHHHHHHHHHHHHhhc
Confidence 3578888778899999999876653 333332 22333443 7999999999999875443
No 76
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.78 E-value=0.13 Score=38.09 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=27.2
Q ss_pred hcHHHHHHHhh-cCCEEEEeCCC-CHHHHHHHHHHHHHhh
Q psy9245 93 QTTPLVDYYQK-KGLHYQVDAAK-SSREVFNMIDRVFQNC 130 (141)
Q Consensus 93 ~t~Pvi~~Y~~-~g~l~~Ida~~-sieeV~~~I~~~l~~~ 130 (141)
....+..+|.. ....+.||+++ ++++|.++|.+.+...
T Consensus 164 ~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 164 EFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp SCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 33344455653 13347899999 9999999999998754
No 77
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.19 E-value=1.1 Score=32.65 Aligned_cols=30 Identities=3% Similarity=-0.028 Sum_probs=23.7
Q ss_pred HHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 100 YYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 100 ~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
+|.+. ..+.||++++++++.++|.+.+...
T Consensus 165 ~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 165 LEPDE-SGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp CCTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred CCCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence 44432 4678999999999999999988754
No 78
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.90 E-value=3.1 Score=28.94 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=17.6
Q ss_pred HHhhcCCEEEEeCC-CCHHHHHHHHHHHHH
Q psy9245 100 YYQKKGLHYQVDAA-KSSREVFNMIDRVFQ 128 (141)
Q Consensus 100 ~Y~~~g~l~~Ida~-~sieeV~~~I~~~l~ 128 (141)
+|.... -+.||++ .+++++.++|.+.+.
T Consensus 143 ~~~~~a-~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 143 LYEEIA-DVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp HHHHHC-SEEC-----CHHHHHHHHHHHHC
T ss_pred HHHhhC-CEEEECCCCCHHHHHHHHHHHHH
Confidence 454433 3568887 799999999998875
No 79
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=76.67 E-value=1 Score=32.40 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=18.8
Q ss_pred EEEEeCCC-CHHHHHHHHHHHHH
Q psy9245 107 HYQVDAAK-SSREVFNMIDRVFQ 128 (141)
Q Consensus 107 l~~Ida~~-sieeV~~~I~~~l~ 128 (141)
.+.||+++ +++++.+.|.+.+.
T Consensus 185 ~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 185 ALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp CEEEETTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHh
Confidence 46799996 99999999998774
No 80
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.55 E-value=1.2 Score=31.32 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEeCC-CCHHHHHHHHHHHHHhh
Q psy9245 109 QVDAA-KSSREVFNMIDRVFQNC 130 (141)
Q Consensus 109 ~Ida~-~sieeV~~~I~~~l~~~ 130 (141)
.||++ .+++++.+.|.+.+...
T Consensus 150 ~Id~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 150 HIDTAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp EEECTTCCHHHHHHHHHHHHTCC
T ss_pred EeeCCCCCHHHHHHHHHHHHHHh
Confidence 79998 89999999999988653
No 81
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=76.55 E-value=0.32 Score=37.06 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHHH-----hhcHHHHHHHhhcCCEE--EEeCCCCHHHHHHHHHHHHHhhh
Q psy9245 78 DNAEALKKRLESYH-----KQTTPLVDYYQKKGLHY--QVDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 78 D~~E~I~kRL~~Y~-----~~t~Pvi~~Y~~~g~l~--~Ida~~sieeV~~~I~~~l~~~~ 131 (141)
.+.+.+.+|+.... ..+.|. +.....++ .||++++++++++.|.+++....
T Consensus 178 ~~~e~i~~~~~~~~~~~~~~~i~~~---~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 178 RDLEQILSQYITFVKPAFEEFCLPT---KKYADVIIPRGADNLVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp CCHHHHHHHHHHTHHHHHHHHTGGG---GGGCSEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHhccHHHHHHhhhh---hhcCcEEEecCCCChhHHHHHHHHHHHHHccch
Confidence 45777777766522 222222 22233332 24888999999999999987653
No 82
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.72 E-value=0.76 Score=35.28 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=40.9
Q ss_pred hhhhccCCCcchhhhhccccccccCC-CCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCC--CHHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIKRS-DDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK--SSREVFNMIDRVF 127 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~R~-DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~--sieeV~~~I~~~l 127 (141)
+|++| |.+.... |+..|. ..+++.+.+..+.|. .|. ..|...+....||+++ ++++|++.|...+
T Consensus 104 i~l~~---~~e~~~~-----R~~~R~~~~~~~~l~~~~~~~e---~~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l 171 (260)
T 3a4m_A 104 IYLKA---SLDVLIR-----RNIERGEKIPNEVIKKMYEKFD---EPG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKS 171 (260)
T ss_dssp EEEEC---CHHHHHH-----HHHHTTCSSCHHHHHHHHHHCC---CTT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHH
T ss_pred EEEeC---CHHHHHH-----HHHhCCCCCCHHHHHHHHHHhc---Ccc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcc
Confidence 57776 5544433 333343 234566666555543 222 2343234567899998 8999999999887
Q ss_pred Hhh
Q psy9245 128 QNC 130 (141)
Q Consensus 128 ~~~ 130 (141)
...
T Consensus 172 ~~~ 174 (260)
T 3a4m_A 172 KEI 174 (260)
T ss_dssp TSC
T ss_pred cCC
Confidence 643
No 83
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=71.31 E-value=1.9 Score=32.92 Aligned_cols=82 Identities=7% Similarity=0.015 Sum_probs=52.3
Q ss_pred cchhhHH-hhhC-cchhhhhhhhhhccCCCcchhhhhccccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEE
Q psy9245 32 PLGLDFR-NRIG-KYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQ 109 (141)
Q Consensus 32 ~q~~~fe-r~i~-~~~~v~g~ly~~~~npP~~~~~~d~~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~ 109 (141)
+-.+.|| .-.. .++.+ +|..| |++... .||..|..-+++.+.+|+..- .|.-+.+..-. +.
T Consensus 118 d~pLL~E~~~~~~~~D~v---i~V~a---p~e~r~-----~Rl~~Rdg~s~eea~~ri~~Q----~~~eek~~~AD--~V 180 (210)
T 4i1u_A 118 VVPLLVESRNWKARCDRV---LVVDC---PVDTQI-----ARVMQRNGFTREQVEAIIARQ----ATREARLAAAD--DV 180 (210)
T ss_dssp ECTTCTTCHHHHHHCSEE---EEEEC---CHHHHH-----HHHHHHHCCCHHHHHHHHHHS----CCHHHHHHTCS--EE
T ss_pred EEecccccCCccccCCeE---EEEEC---CHHHHH-----HHHHhcCCCCHHHHHHHHHHc----CChHHHHHhCC--EE
Confidence 4445666 3322 12333 56777 655443 456677677889999998642 24445554333 45
Q ss_pred EeCC-CCHHHHHHHHHHHHHhh
Q psy9245 110 VDAA-KSSREVFNMIDRVFQNC 130 (141)
Q Consensus 110 Ida~-~sieeV~~~I~~~l~~~ 130 (141)
||.+ ++++++.++|.+++...
T Consensus 181 IdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 181 IVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp EECSSCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHHH
Confidence 7888 89999999999887754
No 84
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=65.23 E-value=5.5 Score=29.04 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=43.3
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhhhcccc
Q psy9245 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKDQ 137 (141)
Q Consensus 68 ~~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~~ 137 (141)
+.+++..|..++++.|.+||....... .+.|+...--.+-+|- +.++.++++.+++...-+..|+.
T Consensus 130 lde~~~~~d~~~e~~i~~~l~~~~~~~--~~a~~~~~~D~iivnd--~le~a~~~l~~ii~~~~~~~~~~ 195 (198)
T 1lvg_A 130 LEQRLRLRNTETEESLAKRLAAARTDM--ESSKEPGLFDLVIIND--DLDKAYATLKQALSEEIKKAQGT 195 (198)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHT--TGGGSTTTCSEEEECS--SHHHHHHHHHHHTHHHHHHTTC-
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH--HHhhccCCceEEEECC--CHHHHHHHHHHHHHHHhhhhhcc
Confidence 345677888889999999999876543 1121211112333443 69999999999998776665554
No 85
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.22 E-value=8.1 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=20.3
Q ss_pred HHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 98 VDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 98 i~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
...|.. ..++.++ +.++++|...+.+++.....
T Consensus 141 ~~~y~~-~~~i~~~-~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 141 TASYKE-EIVHQLP-SNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp HHHSCG-GGEEEEE-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CeEEEcC-CCCHHHHHHHHHHHHHHHHH
Confidence 345542 4555555 58899997777666655433
No 86
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=54.12 E-value=9.4 Score=27.28 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=36.9
Q ss_pred hhhhccCCCcchhhhhcccccc--ccCCCCc---HHHHHHHHH-HHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPL--IKRSDDN---AEALKKRLE-SYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMID 124 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL--~~R~DD~---~E~I~kRL~-~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~ 124 (141)
+|+++ |.+....++..+.. ..|.+|. .+.+.+|+. .|.+. .+.|. .+.++.||+++++++|+++|.
T Consensus 137 i~l~~---~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~----~~~~~-~~~~~vId~~~~~~~v~~~i~ 208 (214)
T 1gtv_A 137 VLLAV---SAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAEL----AAQGW-GGRWLVVGADVDPGRLAATLA 208 (214)
T ss_dssp EEEEE---EHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHH----HHEEE-EEEEEEEEEEEBHHHHHHHHC
T ss_pred EEEeC---CHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHH----HHhCC-CCCEEEEeCCCCHHHHHHHhc
Confidence 67777 55554444443211 0122343 245666665 34332 23332 245788999999999999886
Q ss_pred H
Q psy9245 125 R 125 (141)
Q Consensus 125 ~ 125 (141)
+
T Consensus 209 ~ 209 (214)
T 1gtv_A 209 P 209 (214)
T ss_dssp -
T ss_pred C
Confidence 4
No 87
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=53.35 E-value=11 Score=27.68 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhhcHHHHHHHhhcCC------EEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 79 NAEALKKRLESYHKQTTPLVDYYQKKGL------HYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 79 ~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~------l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
+.+.+.++|..-.+.=.+...+|..... =+.||.+ .+++++.+.|...+..
T Consensus 141 ~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 141 DEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3455666666555555666555522211 1458876 4999999999988864
No 88
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=51.02 E-value=32 Score=25.66 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=37.8
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 70 EPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 70 ~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.||..|-.++++.|.+|+....... .++.. --.+.+| .+.++-++++.+++...
T Consensus 145 ~Rl~~rG~~~~e~i~~rl~~a~~e~----~~~~~-~d~~i~N--d~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 145 RRLRGRGQDSEEVIAKRMAQAVAEM----SHYAE-YDYLIVN--DDFDTALTDLKTIIRAE 198 (219)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHH----TTGGG-SSEEEEC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH----hhccC-CCEEEEC--cCHHHHHHHHHHHHHHH
Confidence 3677788899999999998765443 23221 1234455 48899999999998754
No 89
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=48.55 E-value=4.5 Score=29.71 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=28.8
Q ss_pred ceeEeehhhhhhhhhccccCcccccchhhHHhhh---C-cchhhhhhhhhhccCCCcchhhhhcc
Q psy9245 8 HSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRI---G-KYMRIIILVYLAKGYIQGLQKKLKVT 68 (141)
Q Consensus 8 ~~~~~~~~~~~~~~~qa~~~pr~v~q~~~fer~i---~-~~~~v~g~ly~~~~npP~~~~~~d~~ 68 (141)
..+++|| |||.+.|+..++..+ | .++.+ +|++| |.+....|+.
T Consensus 84 ~~~i~dg------------~~~~~~~~~~l~~~l~~~~~~~d~v---i~L~~---~~e~~~~Rl~ 130 (217)
T 3be4_A 84 NGFVLDG------------FPRTIPQAEGLAKILSEIGDSLTSV---IYFEI---DDSEIIERIS 130 (217)
T ss_dssp TCEEEES------------CCCSHHHHHHHHHHHHHHTCCCCEE---EEEEC---CHHHHHHHHH
T ss_pred CCEEEeC------------CCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHH
Confidence 3577777 999988888887532 3 34455 78888 6666554444
No 90
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=48.19 E-value=20 Score=27.01 Aligned_cols=51 Identities=14% Similarity=0.295 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHhhcHHHHHHHhhcC------CEEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 79 NAEALKKRLESYHKQTTPLVDYYQKKG------LHYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 79 ~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g------~l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
..+...++++.-.+.=.|...+|.... -=+.||.+ .+++++.+.|...++.
T Consensus 161 ~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 161 DEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 345667777777777777777663210 11458876 5999999999998874
No 91
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.26 E-value=8.4 Score=29.15 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=36.6
Q ss_pred hhhhccCCCcchhhhhcccccccc-CCCCcHHHHHHHHHH--HHhhcHHHHHHHhhcCCEEEEeCCC-CHHHHHHHHHHH
Q psy9245 51 VYLAKGYIQGLQKKLKVTGEPLIK-RSDDNAEALKKRLES--YHKQTTPLVDYYQKKGLHYQVDAAK-SSREVFNMIDRV 126 (141)
Q Consensus 51 ly~~~~npP~~~~~~d~~~~rL~~-R~DD~~E~I~kRL~~--Y~~~t~Pvi~~Y~~~g~l~~Ida~~-sieeV~~~I~~~ 126 (141)
+|+.+ |.+....|...+ |.. |...+.+.+.+++.. .......+-.++.. .--+.||.+. +++++.+.|.++
T Consensus 167 ifl~A---~~e~r~~R~~~~-l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~-~d~~~Idts~~~~eev~~~I~~~ 241 (252)
T 4e22_A 167 IFLDA---SSQERAHRRMLQ-LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPA-ADALVLDSTSMSIEQVIEQALAY 241 (252)
T ss_dssp EEEEC---CHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC------------CCCCC-TTEEEEECSSSCHHHHHHHHHHH
T ss_pred EEEEC---CHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhcc-CCeEEEECcCCCHHHHHHHHHHH
Confidence 56666 444433333321 221 444466666665532 22222222222221 1135688776 899999999998
Q ss_pred HHhh
Q psy9245 127 FQNC 130 (141)
Q Consensus 127 l~~~ 130 (141)
+...
T Consensus 242 i~~~ 245 (252)
T 4e22_A 242 AQRI 245 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 92
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=43.45 E-value=6.1 Score=28.76 Aligned_cols=36 Identities=3% Similarity=-0.124 Sum_probs=19.1
Q ss_pred cCcccccchhhHHhhhCcchhhhhhhhhhccCCCcchhhhhc
Q psy9245 26 SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKV 67 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i~~~~~v~g~ly~~~~npP~~~~~~d~ 67 (141)
+|||...|+..+...-..++.+ +|++| |.+....|+
T Consensus 85 g~~~~~~~~~~l~~~~~~~d~v---i~l~~---~~e~~~~R~ 120 (214)
T 1e4v_A 85 GFPRTIPQADAMKEAGINVDYV---LEFDV---PDELIVDRI 120 (214)
T ss_dssp SCCCSHHHHHHHHHTTCCCSEE---EEEEC---CHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHH
Confidence 4677776666654322234444 57776 554444333
No 93
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=42.33 E-value=7.1 Score=28.84 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=23.6
Q ss_pred CcccccchhhHHhhh---C-cchhhhhhhhhhccCCCcchhhhhcc
Q psy9245 27 SDVEVPLGLDFRNRI---G-KYMRIIILVYLAKGYIQGLQKKLKVT 68 (141)
Q Consensus 27 ~pr~v~q~~~fer~i---~-~~~~v~g~ly~~~~npP~~~~~~d~~ 68 (141)
+|+.++|...+++.+ + .++.+ +|++| |.+....|+.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~d~v---i~l~~---~~e~~~~Rl~ 124 (223)
T 2xb4_A 85 FPRNTVQAQKLFEALQEKGMKINFV---IEILL---PREVAKNRIM 124 (223)
T ss_dssp CCCSHHHHHHHHHHHHHTTCCCCEE---EEEEC---CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHH
Confidence 899988888877542 3 34555 68888 6655544443
No 94
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=39.36 E-value=8.2 Score=28.58 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=22.9
Q ss_pred CcccccchhhHHhhhC----cchhhhhhhhhhccCCCcchhhhhcc
Q psy9245 27 SDVEVPLGLDFRNRIG----KYMRIIILVYLAKGYIQGLQKKLKVT 68 (141)
Q Consensus 27 ~pr~v~q~~~fer~i~----~~~~v~g~ly~~~~npP~~~~~~d~~ 68 (141)
|||...|+..+...+. .++.+ +|++| |.+....|+.
T Consensus 102 ~~~~~~~~~~l~~~l~~~~~~~d~v---i~L~~---~~e~~~~Rl~ 141 (233)
T 1ak2_A 102 FPRTVRQAEMLDDLMEKRKEKLDSV---IEFSI---PDSLLIRRIT 141 (233)
T ss_dssp CCCSHHHHHHHHHHHHHHTCCCCEE---EEEEC---CHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEE---EEEEC---CHHHHHHHHH
Confidence 8998888877765442 34555 68887 6655554443
No 95
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=36.16 E-value=43 Score=26.47 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=37.0
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~~ 132 (141)
.+++.+|.++..+.+..|+....... -++|. +.|. +.+.++-+++|.++|....+
T Consensus 225 ~~r~~~r~~e~~~~~~~r~~k~e~e~---~~~fD-----~vIv-Nddle~a~~~l~~iI~~e~~ 279 (292)
T 3tvt_A 225 MEMNRRMTEEQAKKTYERAIKMEQEF---GEYFT-----GVVQ-GDTIEEIYSKVKSMIWSQSG 279 (292)
T ss_dssp HHTCTTSCTTHHHHHHHHHHHHHHHH---TTTCS-----EEEC-CSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHhh---hhhCC-----EEEE-CcCHHHHHHHHHHHHHHhhC
Confidence 34677788998888888886543332 22342 2333 45789999999999987643
No 96
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=36.05 E-value=64 Score=25.27 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=32.1
Q ss_pred cccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhhh
Q psy9245 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCT 131 (141)
Q Consensus 72 L~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~~ 131 (141)
|.+|.. ++.+++||+...+.-.....+|. . .|.. .+.++-++++.++|....
T Consensus 232 L~~R~t--~~~i~~rl~~a~~~e~~~~~~fd----~-vivN-d~le~a~~~l~~ii~~~~ 283 (295)
T 1kjw_A 232 INKRIT--EEQARKAFDRATKLEQEFTECFS----A-IVEG-DSFEEIYHKVKRVIEDLS 283 (295)
T ss_dssp HCTTSC--HHHHHHHHHHHHHHHHHHGGGCS----E-EECC-SSHHHHHHHHHHHHHHHS
T ss_pred HHhcCC--HHHHHHHHHHHHHHHHhccccCe----E-EEEC-cCHHHHHHHHHHHHHhcc
Confidence 556663 46799999988532111112232 2 2443 389999999999987653
No 97
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.68 E-value=40 Score=23.51 Aligned_cols=24 Identities=4% Similarity=0.104 Sum_probs=20.2
Q ss_pred CEEEEeCC-CCHHHHHHHHHHHHHh
Q psy9245 106 LHYQVDAA-KSSREVFNMIDRVFQN 129 (141)
Q Consensus 106 ~l~~Ida~-~sieeV~~~I~~~l~~ 129 (141)
..+.||++ .+++++.+.|.+.+..
T Consensus 159 ~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 159 PQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 34789998 8999999999988864
No 98
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=30.81 E-value=9.6 Score=28.67 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=25.8
Q ss_pred cCcccccchhhHHhhh----CcchhhhhhhhhhccCCCcchhhhhccc
Q psy9245 26 SSDVEVPLGLDFRNRI----GKYMRIIILVYLAKGYIQGLQKKLKVTG 69 (141)
Q Consensus 26 ~~pr~v~q~~~fer~i----~~~~~v~g~ly~~~~npP~~~~~~d~~~ 69 (141)
+|||.+.|+..|+..+ ..++.+ +|++| |.+....|+.+
T Consensus 114 g~p~~~~q~~~l~~~l~~~~~~~d~v---i~l~~---p~e~~~~Rl~~ 155 (243)
T 3tlx_A 114 GYPRNVKQAEDLNKLLQKNQTKLDGV---FYFNV---PDEVLVNRISG 155 (243)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCCCCEE---EEEEC---CHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHcCCCCceE---EEEeC---CHHHHHHHHHc
Confidence 4899999999888654 234555 68888 66665555543
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=28.97 E-value=65 Score=23.48 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=38.5
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhcHHHHHHHhhcCCEEEEeCCCCHHHHHHHHHHHHHhh
Q psy9245 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130 (141)
Q Consensus 69 ~~rL~~R~DD~~E~I~kRL~~Y~~~t~Pvi~~Y~~~g~l~~Ida~~sieeV~~~I~~~l~~~ 130 (141)
.+++..|..++++.|.+||..+..... +.+ ...--.+-++ .+.++.+..+..++...
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~--~~h-~~~~d~iiv~--~~~~ea~~~~~~ii~~~ 208 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH--EAN-LLNFNLSIIN--DDLTLTYQQLKNYLLNS 208 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH--HHT-TSCCSEEEEC--SSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH--hhc-ccCCCEEEEC--CCHHHHHHHHHHHHHHH
Confidence 356778888899999999998866554 222 0111122233 36899999999988754
No 100
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=25.76 E-value=28 Score=28.06 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=30.4
Q ss_pred HHHHHHHhhcHHHHHHHhh-cCCEEEEeCCCCHHHHHHHHHHHHHhhhhhccc
Q psy9245 85 KRLESYHKQTTPLVDYYQK-KGLHYQVDAAKSSREVFNMIDRVFQNCTKQRKD 136 (141)
Q Consensus 85 kRL~~Y~~~t~Pvi~~Y~~-~g~l~~Ida~~sieeV~~~I~~~l~~~~~~~~~ 136 (141)
.++..|.+...-++..-.. ....+.|||+...-....-+..+++......|+
T Consensus 230 ~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~l~~~~~~ 282 (304)
T 3czq_A 230 SKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKD 282 (304)
T ss_dssp GGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHCCCTTCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHHHhhccCC
Confidence 4556777766666665332 246899999986544444444444444444444
No 101
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=21.85 E-value=1.3e+02 Score=19.34 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy9245 113 AKSSREVFNMIDRVFQN 129 (141)
Q Consensus 113 ~~sieeV~~~I~~~l~~ 129 (141)
..++.+|++.|..+|..
T Consensus 52 ~~s~~eV~~~V~~Lf~~ 68 (85)
T 1e91_A 52 GMSEEEVFTEVANLFRG 68 (85)
T ss_dssp CCCHHHHHHHHHHHTSS
T ss_pred cCcHHHHHHHHHHHHcc
Confidence 45889999999988753
Done!