RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9245
(141 letters)
>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 81.7 bits (203), Expect = 4e-20
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
V GE LI+R+DDN E ++KRLE YHKQT PL+DYY+KKG ++D S EVF I +
Sbjct: 152 VCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKA 211
Query: 127 FQN 129
Sbjct: 212 LGK 214
>gnl|CDD|233369 TIGR01351, adk, adenylate kinase. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 210
Score = 77.7 bits (192), Expect = 1e-18
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
TGE LI+R DD E +KKRLE Y +QT PL+DYY+K+G+ Q+D EV+ I
Sbjct: 149 CTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRI 205
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 77.6 bits (191), Expect = 3e-18
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPLI+R DD A LK RLE++HKQT P++DYY KKG+ + A K +EV + +
Sbjct: 183 VTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKA 242
>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 73.9 bits (182), Expect = 2e-17
Identities = 29/40 (72%), Positives = 35/40 (87%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL 106
VTGEPL +RSDDN E +KKRLE+YHKQT P++DYY+KKG
Sbjct: 147 VTGEPLSQRSDDNEETVKKRLETYHKQTEPVIDYYKKKGK 186
>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates.
Length = 194
Score = 73.8 bits (182), Expect = 3e-17
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119
VTGEPL +RSDDN E +KKRLE Y +QT PL+DYY+KKG ++D + EV
Sbjct: 142 VTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 62.4 bits (152), Expect = 5e-13
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
R DDN E++KKR +Y++QT P++++Y+ KG +++A S EVF ++++F
Sbjct: 130 RVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182
>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 59.0 bits (143), Expect = 1e-11
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128
RSDDN E +++R + Y +QT PLVDYY+ +G +VD + EV+ I +
Sbjct: 138 RSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKALG 191
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 57.2 bits (138), Expect = 1e-10
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
GE + R+DD E L KRL SY QT PLV YY +K VD + EV I RV
Sbjct: 135 GEEV--RADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRV 190
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 54.8 bits (132), Expect = 3e-10
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 30 EVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLES 89
EV G +F RIG ++ ++ L K+ + +G R DDN + +KKRLE+
Sbjct: 93 EVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSG-----RVDDNEKTIKKRLET 147
Query: 90 YHKQTTPLVDYYQKKGLHYQVDAAKSSREVF 120
Y+K T P++ YY+ KG +++A + +VF
Sbjct: 148 YYKATEPVIAYYETKGKLRKINAEGTVDDVF 178
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 54.1 bits (130), Expect = 7e-10
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 64 KLKVTGEPLIKR----------SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAA 113
+LKV E LI+R DDN E RL++Y+ QT PL+ YY +G +VD
Sbjct: 112 RLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGM 171
Query: 114 KSSREVFNMID 124
S V ID
Sbjct: 172 GSIEAVAASID 182
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 54.0 bits (130), Expect = 7e-10
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
R+DDN ++ RLE Y ++T PL+D+Y+++GL V+A S + I++V
Sbjct: 130 RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKV 181
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 51.6 bits (123), Expect = 6e-09
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDR 125
R+DDN +K RL++Y+K+T PL+D+Y + QV+ S EV ++I +
Sbjct: 134 RADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQK 184
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 49.5 bits (118), Expect = 4e-08
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNC 130
R DDN + +KKRL+ ++ P++DYY KKG Y ++A + E+F + +F C
Sbjct: 170 RVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAAC 225
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 48.6 bits (116), Expect = 7e-08
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119
R DD E +++RLE Y +QT PL+DYY+ + +D +S V
Sbjct: 130 RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAV 174
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 49.0 bits (117), Expect = 7e-08
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 69 GEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
G LI+R DD E +++RL+ + + T P++++Y+ +G+ +VD ++ EV+ I
Sbjct: 153 GGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADI 207
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 47.7 bits (114), Expect = 2e-07
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDR 125
R DDN E +KKRL+ YH+QT PL++YY +D + EV I +
Sbjct: 130 REDDNEETVKKRLKVYHEQTAPLIEYYSVT-----IDGSGEIEEVLADILK 175
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 45.6 bits (108), Expect = 1e-06
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREV 119
V L +R DD E+LK RL+ Y QT PL+++Y K +DA+K EV
Sbjct: 147 VCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEV 199
>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 42.5 bits (100), Expect = 1e-05
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL 106
LI R+DD E +K RL Y +++ P+ D+Y+K+G
Sbjct: 194 LITRADDTEEVVKARLRVYKEESQPVEDFYRKRGK 228
>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 38.6 bits (90), Expect = 4e-04
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 69 GEP-LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG 105
G P L KRSDD E + RL +Y +P++ +++ +
Sbjct: 166 GNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNEN 203
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 37.9 bits (88), Expect = 8e-04
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMID 124
LI R DD E +K RL+ Y K ++ Y + ++D + VF I
Sbjct: 147 LITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEIS 197
>gnl|CDD|184804 PRK14720, PRK14720, transcript cleavage factor/unknown domain
fusion protein; Provisional.
Length = 906
Score = 32.4 bits (74), Expect = 0.058
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 50 LVYLAKGYIQGLQ-KKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLH 107
L LA+ Y + + KKLK E L+K DN E +KK SY ++ Y KK ++
Sbjct: 119 LRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIY 177
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase;
Validated.
Length = 464
Score = 29.4 bits (67), Expect = 0.66
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 77 DDNAEALKKRLESYHKQTTPLVDYY 101
DD EA + E+Y T LVD Y
Sbjct: 211 DDEYEAFRAYAETYPDNTVLLVDTY 235
>gnl|CDD|165348 PHA03056, PHA03056, putative myristoylated protein; Provisional.
Length = 165
Score = 28.9 bits (64), Expect = 0.72
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 5 NQSHSFIILTQT--ELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIII 49
N+ ++ +IL + ++ Y S D P +DFRNR G Y +II
Sbjct: 15 NKENAEMILEKIVDHIVMYISDESRDENNPEYIDFRNRYGDYRSLII 61
>gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs.
3-keto steroid reductase (in concert with other enzymes)
catalyzes NADP-dependent sterol C-4 demethylation, as
part of steroid biosynthesis. 3-keto reductase is a
classical SDR, with a well conserved canonical active
site tetrad and fairly well conserved characteristic
NAD-binding motif. SDRs are a functionally diverse
family of oxidoreductases that have a single domain with
a structurally conserved Rossmann fold (alpha/beta
folding pattern with a central beta-sheet), an
NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 290
Score = 27.7 bits (62), Expect = 1.8
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQ--KKGLHYQVDAAKSSREVFNMIDRVFQN 129
R+ AEA + L + H + DY + AAK ++ + +D ++ N
Sbjct: 38 RNLQRAEAACRALLASHPDARVVFDYVLVDLSNMVSVFAAAKELKKRYPRLDYLYLN 94
>gnl|CDD|184575 PRK14221, PRK14221, camphor resistance protein CrcB; Provisional.
Length = 124
Score = 27.1 bits (60), Expect = 2.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 18 LIRYNQSS--SSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYI 58
L+RY S+ + + P G F N Y+ I L+YL KGY+
Sbjct: 20 LVRYLVSTWLPASPDFPWGTLFVN----YLGIFCLIYLVKGYL 58
>gnl|CDD|220625 pfam10191, COG7, Golgi complex component 7 (COG7). COG7 is a
component of the conserved oligomeric Golgi complex
which is required for normal Golgi morphology and
localisation. Mutation in COG7 causes a congenital
disorder of glycosylation.
Length = 768
Score = 27.1 bits (60), Expect = 4.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 81 EALKKRLESYHKQTTP-LVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQ 128
EALK RLE+ +P +V + + VD A+ +F IDR+ Q
Sbjct: 177 EALKNRLEAL---VSPSVVQAFTSQ----DVDQAQDYVGIFIEIDRLPQ 218
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 26.4 bits (59), Expect = 4.6
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 58 IQGLQKKLKVTGEPLIKRSDDNAEALKKRLESY 90
++ L+++L E L KR + +AE L+++L Y
Sbjct: 69 LEELRQRLAPYAEELRKRLNRDAEELRRKLAPY 101
>gnl|CDD|118036 pfam09499, RE_ApaLI, ApaLI-like restriction endonuclease. This
family includes R.ApaLI and R.XbaI restriction
endonucleases. ApaLI recognises and cleaves the sequence
GTGCAC.
Length = 191
Score = 26.3 bits (58), Expect = 4.7
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 53 LAKGYIQGLQKK-LKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG 105
LA+ Y LQKK LK E ++DD + L R+ Q L+D YQ KG
Sbjct: 9 LAEKYASELQKKILKRAVE---MQNDDKSHYLIYRVLGIALQEGRLIDMYQNKG 59
>gnl|CDD|179716 PRK04025, PRK04025, S-adenosylmethionine decarboxylase proenzyme;
Validated.
Length = 139
Score = 26.0 bits (57), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 104 KGLHYQVDAAKSSREVFNMIDR---VFQNCTKQRKDQV 138
G HY V+AA EV DR +F K+ +V
Sbjct: 4 IGYHYIVEAAGCDPEVLGDADRIREIFLEAAKRGNMEV 41
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 280
Score = 26.4 bits (58), Expect = 5.4
Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 21 YNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGEPLIKRSDDNA 80
Y+ +E G+ F N+I + + + I L K L L + ++ +
Sbjct: 7 YSLRIYEMIETLNGVTFMNKILSINKNLSVYEKEINQIDNLHKDL------LTEVFEEQS 60
Query: 81 EALKKRLESYHKQTTPL-------VDYYQKKGLH---YQVDAAKSSREVFNMIDRVFQNC 130
L++ L+++ QTT L + ++ G+H Q A ++ +I
Sbjct: 61 RKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHLANKQAQAENVRQKFLKLIQDYRIID 120
Query: 131 TKQRKDQV 138
+ R+++
Sbjct: 121 SNYREEEK 128
>gnl|CDD|224243 COG1324, CutA, Uncharacterized protein involved in tolerance to
divalent cations [Inorganic ion transport and
metabolism].
Length = 104
Score = 25.7 bits (57), Expect = 5.8
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTP 96
+IK + + E L +R++ H P
Sbjct: 57 IIKTTSEKFEELIERIKELHPYEVP 81
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 26.2 bits (58), Expect = 6.0
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 58 IQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSR 117
+Q +QK+LK L A + + + E+ K+ LV+ + KK Y+ D +
Sbjct: 60 LQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEK-LVNAFNKKQQEYEKDLNRREA 118
Query: 118 EVFNMIDRVFQNCTKQR 134
E + Q +
Sbjct: 119 EEEQKLLEKIQRAIESV 135
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 26.3 bits (58), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL 106
V E L +RS + L+ +L+ KQ L+ + +GL
Sbjct: 341 VQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGL 380
>gnl|CDD|220718 pfam10366, Vps39_1, Vacuolar sorting protein 39 domain 1. This
domain is found on the vacuolar sorting protein Vps39
which is a component of the C-Vps complex. Vps39 is
thought to be required for the fusion of endosomes and
other types of transport intermediates with the vacuole.
In Saccharomyces cerevisiae, Vps39 has been shown to
stimulate nucleotide exchange. The precise function of
this domain has not been characterized.
Length = 105
Score = 25.3 bits (56), Expect = 8.6
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 77 DDNAEALKKRLESYHKQTTPLVDYYQKKGLH 107
E LKK H++ L+D Y K LH
Sbjct: 30 KVVEEWLKK-----HEKYVELIDLYYGKKLH 55
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 25.6 bits (57), Expect = 9.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 72 LIKRSDDNAEALKKRLESYHK 92
L R D+ E + +RLE+ K
Sbjct: 132 LKGRGTDSEEVIARRLENAKK 152
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 25.8 bits (57), Expect = 9.1
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVD--AAKSSREVF 120
L +++ + E L K L+ +Q + ++ + KGL V+ A K +++ F
Sbjct: 326 LPEKAAEKGEYLIKGLQKVQQQ-STIIGDVRGKGLLIGVEFVADKKTKQPF 375
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.374
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,933,346
Number of extensions: 620541
Number of successful extensions: 720
Number of sequences better than 10.0: 1
Number of HSP's gapped: 720
Number of HSP's successfully gapped: 59
Length of query: 141
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 54
Effective length of database: 7,078,804
Effective search space: 382255416
Effective search space used: 382255416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)