RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9245
(141 letters)
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase,
phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1
g.41.2.1 PDB: 2ak2_A 2c9y_A*
Length = 233
Score = 98.4 bits (246), Expect = 1e-26
Identities = 37/65 (56%), Positives = 48/65 (73%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
+TGEPLI+RSDDN +ALK RLE+YH QTTPLV+YY K+G+H +DA+++ VF I
Sbjct: 168 ITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAA 227
Query: 127 FQNCT 131
F T
Sbjct: 228 FSKAT 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 96.8 bits (242), Expect = 4e-26
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPL+ R DDNAEA+K RL+ +HKQT PLV +Y+ G+ +V+A +EV I ++
Sbjct: 157 VTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216
Query: 127 F 127
Sbjct: 217 L 217
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 96.8 bits (242), Expect = 4e-26
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGE L++RSDDNA+ALKKRL +YH QT P+VD+Y+K G+ VDA++ V+ I
Sbjct: 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNK 216
Query: 127 F 127
Sbjct: 217 L 217
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 96.9 bits (242), Expect = 7e-26
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VT EPLI+R DDN + LKKRL + +T+PL+ YY+ K L +DA + + ++ I +
Sbjct: 181 VTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQH 240
Query: 127 F 127
Sbjct: 241 I 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 95.7 bits (239), Expect = 1e-25
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
G L +R DD E +K RL+ KQT PL+D+Y +KG+ +D + ++VF I+ +
Sbjct: 152 KDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDL 211
Query: 127 FQN 129
Sbjct: 212 LGG 214
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP
phosphotransferase, myokinase, structural genomics,
structural genomics consortium, SGC; 1.48A {Homo
sapiens} PDB: 2ak3_A*
Length = 227
Score = 95.3 bits (238), Expect = 2e-25
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
+TGEPLI+R DD E + KRL++Y QT P+++YYQKKG+ +++ +++ +
Sbjct: 153 LTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETN-KIWPYVYAF 211
Query: 127 FQNCTKQRKDQ 137
Q QR +
Sbjct: 212 LQTKVPQRSQK 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 95.3 bits (238), Expect = 2e-25
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
G L +R+DDN E + KRLE KQT PL+D+Y +KG V+ + ++V+ + +
Sbjct: 152 KDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVL 211
Query: 127 FQN 129
Sbjct: 212 LGG 214
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding,
human, structura genomics, structural genomics
consortium, SGC, transferase; HET: GP5; 2.05A {Homo
sapiens} PDB: 2ar7_A* 3ndp_A
Length = 246
Score = 95.4 bits (238), Expect = 2e-25
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
VTGEPL+++ DD EA+ RL Y P+++ Y+ +G+ +Q +++ +++ + +
Sbjct: 173 VTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTETN-KIWPYVYTL 231
Query: 127 FQNCTKQRKDQVLFI 141
F N + + ++
Sbjct: 232 FSNKITPIQSKEAYL 246
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 93.8 bits (234), Expect = 5e-25
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 68 TGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
G +I+R DD E +KKRLE Y +QT PL++YY+KKG+ +DA+K EV+ + V
Sbjct: 143 PGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202
Query: 128 QNC 130
+
Sbjct: 203 GDG 205
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 90.0 bits (224), Expect = 2e-23
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 64 KLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
+ + L +R DD E +K RLE+Y++ L+ Y + + +V + VF I
Sbjct: 147 ENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKI 204
Query: 124 DRVFQNCTKQRKDQV 138
D + + +++ + V
Sbjct: 205 DELLGSILEKKNEMV 219
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 89.5 bits (223), Expect = 3e-23
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG-----LHYQVDAAKSSREVFN 121
VTGE L R DD E ++KRL YH+ T PL+ YY K+ + +VD K EV
Sbjct: 148 VTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRA 207
Query: 122 MIDRV 126
++++
Sbjct: 208 DLEKI 212
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 83.0 bits (206), Expect = 1e-20
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKG-----------LHYQVDAAKS 115
VTGEPL++R DD E +KKRL+ Y QT PL+ YY + ++ +
Sbjct: 156 VTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGA 215
Query: 116 SREVFNMIDRV 126
E+ + R
Sbjct: 216 VEEIRARVRRA 226
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 76.8 bits (190), Expect = 9e-19
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRV 126
L RSDDN E +++RLE Y ++T PLV YY+ +G+ +VD + EV+ I
Sbjct: 128 ELEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAA 183
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 76.0 bits (188), Expect = 2e-18
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
DD + + KRLE+Y++ + P++ YY+ K ++++A + +VF + +
Sbjct: 141 LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 76.0 bits (188), Expect = 3e-18
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
R DDN E +KKRLE+Y+K T P++ +Y+K+G+ +V+A S VF+ +
Sbjct: 139 RVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 75.6 bits (187), Expect = 3e-18
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
RSDDN E++KKR +++ QT ++D+Y K + A + EV+N ++ +F++
Sbjct: 136 GRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 75.7 bits (187), Expect = 5e-18
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
RSDDN E++KKR ++ + + P+++Y++ K +V +S +V+ + ++
Sbjct: 146 GRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 74.9 bits (185), Expect = 6e-18
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
RSDDN E+L+KR+++Y + T P++D Y++ G ++DA+KS EVF+ + ++F
Sbjct: 139 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 73.5 bits (181), Expect = 4e-17
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 67 VTGEPLIKRSDDNAE-ALKKRLESYHKQTTPL---VDYYQKKG-----LHYQVDAAKSSR 117
V G L R+DD E A+ KR + Y+ YY+ ++ ++D S
Sbjct: 153 VCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSID 212
Query: 118 EVFNMIDRV 126
+ + +
Sbjct: 213 SIKDTLLAQ 221
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 69.1 bits (170), Expect = 1e-15
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 65 LKVTGEPLIKR------SDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSRE 118
+V+ E L++R +DD + + R++ Y +T PL++YY+ + VDA + E
Sbjct: 133 FRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDE 190
Query: 119 VFNMIDRV 126
VF R
Sbjct: 191 VFARALRA 198
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.013
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 9/36 (25%)
Query: 55 KGYIQGLQKKLKVTGEPLIKRSDDNAEAL--KKRLE 88
K ++ LQ LK+ +DD+A AL K +E
Sbjct: 19 KQALKKLQASLKLY-------ADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 0.41
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 18/42 (42%)
Query: 81 EALKKRLES----YHKQTTPLVDYYQKKGLHYQVDAAKSSRE 118
+ALKK L++ Y + P L A K++ E
Sbjct: 20 QALKK-LQASLKLYADDSAP--------AL-----AIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.44
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 18/98 (18%)
Query: 20 RYNQSSSSDVE--VPLGLD--FRNRIGKYMRIIIL---------VYLAKGYIQGLQKKLK 66
YN + D + +P LD F + IG +++ I V+L +++ +K++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QKIR 508
Query: 67 VTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKK 104
++L+ Y Y++
Sbjct: 509 HDSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERL 544
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.5
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 102 QKKG----LHYQVDAAKSSREVFNMIDRVFQNC 130
Q++G L Y +K++++V+N D F++
Sbjct: 1627 QEQGMGMDL-Y--KTSKAAQDVWNRADNHFKDT 1656
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 3.5
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 20/79 (25%)
Query: 62 QKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAK-SSREVF 120
+K+L+ + E KK LE ++++ + QV+ K ++R
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQR-------QSE-----QVEKNKINNRIA- 141
Query: 121 NMIDRVFQNCTKQRKDQVL 139
D+ F +Q ++
Sbjct: 142 ---DKAFY---QQPDADII 154
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge
region, four-helix-bundl helix- bundle, alpha-beta
structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1
d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Length = 128
Score = 25.5 bits (56), Expect = 4.7
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 54 AKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE 88
AK ++ V + K + AE +KK+LE
Sbjct: 88 AKDLVEKAGSPDAVIKSGVSK---EEAEEIKKKLE 119
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 26.2 bits (58), Expect = 5.1
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 52 YLAKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHK 92
Y+ + K T E L K+ D A L K + +Y+
Sbjct: 435 YVHLNIV-----KEGKTIEELAKQIDVPAAELAKTVTAYNG 470
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA,
translation; 2.8A {Thermus thermophilus} PDB: 2j03_L
3i8i_I
Length = 125
Score = 25.1 bits (55), Expect = 6.6
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 64 KLKVTGEPLIKR--SDDNAEALKKRLE 88
K +K S AE +KK+LE
Sbjct: 90 KDLAEKGGPVKEGVSKQEAEEIKKKLE 116
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with
ribosome, ribosome-antibi complex; 3.20A {Escherichia
coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3
2gyc_3 1rqt_A
Length = 121
Score = 24.7 bits (54), Expect = 7.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 54 AKGYIQGLQKKLKVTGEPLIKRSDDNAEALKKRLE 88
AK ++ LK E + K D+AEALKK LE
Sbjct: 84 AKDLVESAPAALK---EGVSK---DDAEALKKALE 112
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 25.4 bits (56), Expect = 7.9
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 72 LIKRSDDNAEALKKRLESYHKQTTPLVDYYQKK 104
++ DNA+ Y +Q +
Sbjct: 164 FVELDPDNAKYYNANAAVYSEQLKAIDRQLGAD 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.374
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,043,668
Number of extensions: 114385
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 41
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)