RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9245
(141 letters)
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 56.4 bits (135), Expect = 3e-11
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 73 IKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132
+R D E + KRL++Y QT P+++YY+KKG+ +++ +++ + Q
Sbjct: 121 KQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETN-KIWPHVYAFLQTKLP 179
Query: 133 QRKDQ 137
QR +
Sbjct: 180 QRSQE 184
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 54.9 bits (131), Expect = 9e-11
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
SDDN +ALK RLE+YH QTTPLV+YY K+G+H +DA+++ VF I F
Sbjct: 133 HSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAF 185
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 53.8 bits (128), Expect = 2e-10
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
R DDN E +KKRLE+Y+K T P++ +Y+K+G+ +V+A S +VF+ +
Sbjct: 137 GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLDT 192
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 53.4 bits (127), Expect = 3e-10
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 71 PLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
RSDDN E++KKR +++ QT ++D+Y K + A + EV+N ++ +F++
Sbjct: 133 ESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 52.3 bits (124), Expect = 1e-09
Identities = 20/125 (16%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 5 NQSHSFIILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKK 64
+ + + ++ ++ N+ P +D + + + + ++
Sbjct: 71 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 130
Query: 65 LKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMID 124
L G+ RSDDN E++KKR ++ + + P+++Y++ K +V +S +V+ +
Sbjct: 131 LLERGKT-SGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQ 189
Query: 125 RVFQN 129
++
Sbjct: 190 DAIRD 194
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 51.8 bits (123), Expect = 1e-09
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQN 129
+DDN + + RLE QT PL+ +Y K + ++ K ++VF +D + Q
Sbjct: 125 TADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 179
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 51.9 bits (123), Expect = 1e-09
Identities = 23/54 (42%), Positives = 40/54 (74%)
Query: 74 KRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
RSDDN E+L+KR+++Y + T P++D Y++ G ++DA+KS EVF+ + ++F
Sbjct: 137 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 190
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 49.2 bits (116), Expect = 9e-09
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 83 LKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMI 123
LKKRL +YH QT P+VD+Y+K G+ VDA++ V+ I
Sbjct: 133 LKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADI 173
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 48.3 bits (114), Expect = 3e-08
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTKQR 134
DD E +K RLE+Y++ L+ Y + + +V + VF ID + + +++
Sbjct: 125 VFDDTEEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGSILEKK 182
Query: 135 KDQV 138
+ V
Sbjct: 183 NEMV 186
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 48.0 bits (113), Expect = 3e-08
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 73 IKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVFQNCTK 132
+DDN + RLE KQ PLVD+Y++KG ++ + +VF I + +
Sbjct: 123 RLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGLAR 182
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 41.5 bits (96), Expect = 6e-06
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 77 DDNAEALKKRLESYHKQTTPLVDYYQKKGL-----HYQVDAAKSSREVFNMIDRV 126
DD E ++KRL YH+ T PL+ YY K+ + +VD K EV ++++
Sbjct: 123 DDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKI 177
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 40.3 bits (93), Expect = 2e-05
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 75 RSDDNAEALKKRLESYHKQTTPLVDYYQKKGLHYQVDAAKSSREVFNMIDRVF 127
R+DD + + R++ Y +T PL++YY+ + VDA + EVF R
Sbjct: 129 RADDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRAL 179
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 38
Score = 25.5 bits (56), Expect = 0.51
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 67 VTGEPLIKRSDD 78
VTGE L++RSDD
Sbjct: 27 VTGEALVQRSDD 38
>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 291
Score = 25.2 bits (55), Expect = 2.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 58 IQGLQKKLKVTGEPLI 73
+QG+++ + V PL
Sbjct: 7 VQGIREFMGVKDRPLT 22
>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlorobium tepidum [TaxId:
1097]}
Length = 283
Score = 25.2 bits (55), Expect = 3.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 58 IQGLQKKLKVTGEPLI 73
I+GL+ L G P+
Sbjct: 7 IEGLRDILNAHGRPIF 22
>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId:
83374]}
Length = 328
Score = 24.8 bits (54), Expect = 4.2
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 58 IQGLQKKLKVTGEPLI 73
+ +++L G PL+
Sbjct: 6 VILERERLDKFGRPLL 21
>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 307
Score = 24.8 bits (54), Expect = 4.3
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 58 IQGLQKKLKVTGEPLI 73
I+G++K L++ P+
Sbjct: 7 IEGVRKMLEIKDRPIY 22
>d1g5ga1 f.12.1.1 (A:33-66,A:224-454) Head and neck region of the
ectodomain of NDV fusion glycoprotein {Newcastle
disease virus [TaxId: 11176]}
Length = 265
Score = 24.5 bits (53), Expect = 4.8
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 11 IILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMRIIILVYLAKGYIQGLQKKLKVTGE 70
I++T + + SS + + L + + I L LA G + L KL V
Sbjct: 10 IVVTGDKAVNIYTSSQTGSIIIKLLQITSPALTQLTIQALYNLAGGNMDYLLTKLGVGNN 69
Query: 71 PL 72
L
Sbjct: 70 QL 71
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 25.0 bits (54), Expect = 4.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 72 LIKRSDDNAEALKKRLESYHKQ 93
L K D E +KKR E Y
Sbjct: 372 LEKLGGDFMEEVKKRFEDYVNH 393
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 325
Score = 24.0 bits (52), Expect = 7.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 58 IQGLQKKLKVTGEPLI 73
IQ + KL G PL+
Sbjct: 5 IQVERDKLNKYGRPLL 20
>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA,
N-terminal domain {Synechococcus elongatus [TaxId:
32046]}
Length = 105
Score = 23.6 bits (51), Expect = 7.5
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 59 QGLQKKLKVTGEPLIKRSDDNAEALKKRLESYHKQTTPLVDYYQKKGL--HYQVDAA 113
Q L +L V PL + + + +E+ + +++ + L +Y++
Sbjct: 11 QPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVT 67
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS)
{Thermus thermophilus [TaxId: 274]}
Length = 272
Score = 24.1 bits (51), Expect = 7.8
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 12 ILTQTELIRYNQSSSSDVEVPLGLDFRNRIGKYMR 46
++ + EL Y + V P G I + +
Sbjct: 17 VIQKAELADYGPVRGTIVVRPYGYAIWENIQQVLD 51
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK,
insert "zinc finger" domain {Cow (Bos taurus),
mitochondrial izozyme-3 [TaxId: 9913]}
Length = 37
Score = 22.0 bits (47), Expect = 8.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 66 KVTGEPLIKRSD 77
+TGEPL++R D
Sbjct: 26 DLTGEPLVQRED 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.374
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,178
Number of extensions: 21622
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 26
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)