Query psy9251
Match_columns 121
No_of_seqs 115 out of 1208
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:42:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3275|consensus 100.0 4.9E-40 1.1E-44 218.9 11.8 113 7-120 15-127 (127)
2 PRK10687 purine nucleoside pho 100.0 1.5E-36 3.2E-41 206.3 12.0 109 7-116 2-111 (119)
3 cd01276 PKCI_related Protein K 100.0 5.6E-33 1.2E-37 183.3 12.0 103 9-112 1-104 (104)
4 COG0537 Hit Diadenosine tetrap 100.0 7.1E-32 1.5E-36 187.5 13.2 104 8-115 1-107 (138)
5 cd01277 HINT_subgroup HINT (hi 100.0 1.5E-29 3.2E-34 166.3 12.6 102 9-112 1-103 (103)
6 PF01230 HIT: HIT domain; Int 100.0 6E-29 1.3E-33 162.8 10.4 96 17-114 1-97 (98)
7 cd01275 FHIT FHIT (fragile his 100.0 2.5E-28 5.4E-33 166.6 12.6 102 10-113 1-104 (126)
8 cd01278 aprataxin_related apra 100.0 6.9E-28 1.5E-32 159.2 11.8 99 10-111 2-104 (104)
9 cd00468 HIT_like HIT family: H 99.9 3.2E-26 6.9E-31 145.6 9.8 85 25-111 1-86 (86)
10 PF11969 DcpS_C: Scavenger mRN 99.9 7.2E-25 1.6E-29 148.2 5.2 100 9-113 1-105 (116)
11 PRK11720 galactose-1-phosphate 99.9 5E-24 1.1E-28 167.1 10.7 105 7-112 193-302 (346)
12 TIGR00209 galT_1 galactose-1-p 99.9 1.5E-23 3.2E-28 164.5 10.6 106 7-113 193-303 (347)
13 cd00608 GalT Galactose-1-phosp 99.9 4.1E-23 8.8E-28 161.0 11.2 107 7-114 183-296 (329)
14 PLN02643 ADP-glucose phosphory 99.9 5.3E-22 1.2E-26 155.2 11.1 102 7-113 197-303 (336)
15 KOG3379|consensus 99.9 1.7E-21 3.8E-26 133.3 11.0 95 21-116 16-110 (150)
16 KOG4359|consensus 99.7 5.4E-17 1.2E-21 111.8 9.5 104 6-112 29-136 (166)
17 PF02744 GalP_UDP_tr_C: Galact 99.5 4.8E-14 1E-18 100.7 8.3 103 8-111 13-119 (166)
18 COG1085 GalT Galactose-1-phosp 99.4 2.4E-12 5.2E-17 100.5 7.6 105 6-111 183-291 (338)
19 KOG0562|consensus 99.2 1.9E-11 4.1E-16 86.6 2.9 91 21-113 14-106 (184)
20 PF04677 CwfJ_C_1: Protein sim 99.1 5.8E-09 1.2E-13 71.1 12.1 103 3-112 6-108 (121)
21 KOG2958|consensus 99.1 3.5E-10 7.7E-15 86.6 6.6 92 20-112 213-309 (354)
22 KOG2476|consensus 98.3 1.6E-05 3.5E-10 64.5 11.6 101 5-112 316-416 (528)
23 KOG3969|consensus 98.3 1.4E-05 3E-10 61.1 10.1 92 17-112 155-256 (310)
24 PLN03103 GDP-L-galactose-hexos 97.8 0.00012 2.6E-09 58.8 8.0 73 27-111 167-241 (403)
25 PRK05471 CDP-diacylglycerol py 97.4 0.0009 2E-08 50.8 7.9 98 8-110 40-144 (252)
26 KOG2477|consensus 97.4 0.0017 3.8E-08 53.6 9.9 101 7-112 406-507 (628)
27 COG5075 Uncharacterized conser 97.4 0.00037 8E-09 52.7 5.3 91 17-111 150-250 (305)
28 TIGR00672 cdh CDP-diacylglycer 97.3 0.0017 3.6E-08 49.3 7.9 97 9-110 40-143 (250)
29 PF02611 CDH: CDP-diacylglycer 97.1 0.002 4.4E-08 48.1 6.9 87 19-110 23-115 (222)
30 KOG2720|consensus 97.0 0.00059 1.3E-08 53.9 3.1 74 27-111 165-238 (431)
31 COG2134 Cdh CDP-diacylglycerol 96.7 0.015 3.2E-07 43.2 8.4 97 8-110 40-144 (252)
32 COG4360 APA2 ATP adenylyltrans 96.6 0.0043 9.3E-08 47.0 5.0 69 31-111 94-162 (298)
33 cd00608 GalT Galactose-1-phosp 96.5 0.018 3.9E-07 45.2 8.3 65 45-112 95-162 (329)
34 PLN02643 ADP-glucose phosphory 96.1 0.063 1.4E-06 42.4 9.2 64 45-111 109-175 (336)
35 TIGR00209 galT_1 galactose-1-p 95.5 0.22 4.8E-06 39.5 10.1 96 8-111 50-171 (347)
36 PRK11720 galactose-1-phosphate 95.5 0.21 4.6E-06 39.6 9.8 64 44-111 106-171 (346)
37 COG1085 GalT Galactose-1-phosp 93.0 0.92 2E-05 36.1 8.4 105 6-111 38-162 (338)
38 PF01087 GalP_UDP_transf: Gala 87.0 1.9 4.1E-05 31.0 5.2 65 45-111 112-178 (183)
39 PF14317 YcxB: YcxB-like prote 83.6 5.1 0.00011 22.5 5.2 38 23-71 23-60 (62)
40 PF03432 Relaxase: Relaxase/Mo 67.2 15 0.00032 26.8 4.9 37 69-111 72-109 (242)
41 PF00552 IN_DBD_C: Integrase D 64.8 13 0.00028 21.7 3.4 31 21-55 21-51 (55)
42 PRK13878 conjugal transfer rel 63.4 9.9 0.00022 33.4 3.7 36 70-111 85-121 (746)
43 TIGR03793 TOMM_pelo TOMM prope 50.5 48 0.001 20.6 4.4 21 43-66 52-72 (77)
44 KOG2958|consensus 48.3 68 0.0015 25.4 5.7 64 43-109 106-174 (354)
45 PF01076 Mob_Pre: Plasmid reco 46.1 82 0.0018 22.7 5.7 47 59-112 94-141 (196)
46 COG1943 Transposase and inacti 45.7 95 0.0021 21.2 7.1 56 40-110 10-65 (136)
47 PF01868 UPF0086: Domain of un 43.8 65 0.0014 20.4 4.4 30 21-55 31-60 (89)
48 PRK09458 pspB phage shock prot 34.2 86 0.0019 19.6 3.6 26 58-83 34-59 (75)
49 COG0564 RluA Pseudouridylate s 33.1 53 0.0012 25.4 3.1 19 18-36 74-92 (289)
50 smart00537 DCX Domain in the D 32.0 37 0.0008 21.4 1.8 29 30-59 7-35 (89)
51 smart00538 POP4 A domain found 31.5 85 0.0019 20.1 3.5 36 21-61 30-65 (92)
52 PF02729 OTCace_N: Aspartate/o 29.9 65 0.0014 22.1 2.9 26 52-80 1-26 (142)
53 cd00165 S4 S4/Hsp/ tRNA synthe 29.7 42 0.00091 18.5 1.7 14 21-34 56-69 (70)
54 PF01446 Rep_1: Replication pr 28.9 2.5E+02 0.0054 21.0 7.3 66 40-110 19-87 (233)
55 KOG3671|consensus 28.6 93 0.002 26.4 3.9 63 4-69 70-132 (569)
56 PF06667 PspB: Phage shock pro 28.5 1.2E+02 0.0026 18.8 3.6 26 58-83 34-59 (75)
57 PF04270 Strep_his_triad: Stre 26.3 1.4E+02 0.0031 17.3 5.7 33 21-65 11-43 (53)
58 TIGR01827 gatC_rel Asp-tRNA(As 24.4 60 0.0013 19.9 1.7 20 35-55 53-72 (73)
59 PF12239 DUF3605: Protein of u 24.3 2.6E+02 0.0056 19.7 8.7 81 25-110 67-156 (158)
60 cd03782 MATH_Meprin_Beta Mepri 23.3 1.5E+02 0.0033 21.2 3.8 33 86-118 33-71 (167)
61 COG4997 Uncharacterized conser 22.2 1.1E+02 0.0024 19.6 2.6 24 61-84 50-73 (95)
62 PF02893 GRAM: GRAM domain; I 20.6 1.5E+02 0.0032 17.1 2.9 34 23-57 32-65 (69)
63 PF00446 GnRH: Gonadotropin-re 20.5 58 0.0013 12.5 0.7 6 115-120 5-10 (10)
No 1
>KOG3275|consensus
Probab=100.00 E-value=4.9e-40 Score=218.95 Aligned_cols=113 Identities=30% Similarity=0.559 Sum_probs=109.0
Q ss_pred CCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCC
Q psy9251 7 QDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTD 86 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~ 86 (121)
...|.||+|+++++|+.+|||||.++||.|++ |.+|+|+|||||+|++.++.+.+.+.++|+.++.+++++++++|+.+
T Consensus 15 ~~~tIF~kIi~keIPa~ii~Edd~~lAF~Di~-Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~ 93 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIPAKIIFEDDRCLAFHDIA-PQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLED 93 (127)
T ss_pred CCCcEeeeeecccCCcceEeeccceEEEEecC-CCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccc
Confidence 57899999999999999999999999999999 99999999999999888888888888899999999999999999999
Q ss_pred ceEEEEecCCcCCCccceeeEEEecCCCCCCCCC
Q psy9251 87 GYRIHVNNGPLAEQFYDWLYLDIFADKRLGWPPG 120 (121)
Q Consensus 87 g~~~~~n~g~~agq~v~HlHlHIip~~~~~~~~~ 120 (121)
|||+++|||..++|||+|+|+||+||.+++||||
T Consensus 94 gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 94 GYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred ceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 9999999999999999999999999999999997
No 2
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=100.00 E-value=1.5e-36 Score=206.33 Aligned_cols=109 Identities=23% Similarity=0.397 Sum_probs=102.3
Q ss_pred CCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC-C
Q psy9251 7 QDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL-T 85 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~-~ 85 (121)
.|+|.||+|++|++|+.+|||||.++||.|++ |.++||+|||||+|++++.+|++++..++.+++..++++++..+. +
T Consensus 2 ~~~CiFC~I~~g~~p~~~v~edd~~~aflD~~-P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~ 80 (119)
T PRK10687 2 AEETIFSKIIRREIPSDIVYQDELVTAFRDIS-PQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAE 80 (119)
T ss_pred CCCCchhhhhcCCCCCCEEEECCCEEEEEcCC-CCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999999999 999999999999999999999999999999999988888776554 6
Q ss_pred CceEEEEecCCcCCCccceeeEEEecCCCCC
Q psy9251 86 DGYRIHVNNGPLAEQFYDWLYLDIFADKRLG 116 (121)
Q Consensus 86 ~g~~~~~n~g~~agq~v~HlHlHIip~~~~~ 116 (121)
+||++++|+|+.+||+|+|+|+|||||.+++
T Consensus 81 ~g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 81 DGYRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred CceEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 8999999999999999999999999998765
No 3
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=100.00 E-value=5.6e-33 Score=183.33 Aligned_cols=103 Identities=26% Similarity=0.414 Sum_probs=98.4
Q ss_pred CCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC-CCc
Q psy9251 9 RSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL-TDG 87 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~-~~g 87 (121)
+|.||.+++++.+.++||||+.++||.|++ |.++||+||+||+|++++.+|++++.+++.++++.++++.+.++. ++|
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~-p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 79 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDIN-PQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDG 79 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCC-CCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 599999999999999999999999999999 999999999999999999999999999999999988999998875 679
Q ss_pred eEEEEecCCcCCCccceeeEEEecC
Q psy9251 88 YRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 88 ~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
||+++|+|+.+||+++|+|+|||+|
T Consensus 80 ~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 80 YRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEEeCCCCCCCceeEEEEEEeCC
Confidence 9999999999999999999999986
No 4
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.98 E-value=7.1e-32 Score=187.50 Aligned_cols=104 Identities=29% Similarity=0.372 Sum_probs=92.2
Q ss_pred CCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC---
Q psy9251 8 DRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL--- 84 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~--- 84 (121)
..|.||++++|++|+.+||||+.++||.|++ |.++||+|||||+|+.++.+|++++ +++|+..+++++++++.
T Consensus 1 ~~ciFc~ii~~e~~~~~Vye~~~~~afld~~-P~~~gH~LviPk~h~~~l~~l~~~~---~~~l~~~~~~ia~al~~~~~ 76 (138)
T COG0537 1 MMCIFCKIIRGEIPANKVYEDEHVLAFLDIY-PAAPGHTLVIPKRHVSDLEDLDPEE---LAELFLLAQKIAKALKEAFG 76 (138)
T ss_pred CCceeeeeecCCCCceEEEeCCCEEEEecCC-CCCCCeEEEEeccchhhhhhCCHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999999999 9999999999999999999999987 45555555555555432
Q ss_pred CCceEEEEecCCcCCCccceeeEEEecCCCC
Q psy9251 85 TDGYRIHVNNGPLAEQFYDWLYLDIFADKRL 115 (121)
Q Consensus 85 ~~g~~~~~n~g~~agq~v~HlHlHIip~~~~ 115 (121)
++|||+++|+|..+||+|+|+|+|||||.+.
T Consensus 77 ~~g~ni~~N~g~~agq~V~HlH~HvIPr~~~ 107 (138)
T COG0537 77 ADGYNIGINNGKAAGQEVFHLHIHIIPRYKG 107 (138)
T ss_pred CCceEEEEecCcccCcCcceEEEEEcCCcCC
Confidence 6899999999999999999999999998764
No 5
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.97 E-value=1.5e-29 Score=166.28 Aligned_cols=102 Identities=21% Similarity=0.176 Sum_probs=91.7
Q ss_pred CCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCCCc
Q psy9251 9 RSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLTDG 87 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g 87 (121)
+|.||.+++++.+.++|+|++.++||.|.+ |.+|||+||+||+|++++.+|++++...|+.+++ +++++.+..+ ++|
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~-~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~-~~~ 78 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDIN-PASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK-ADG 78 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCC-CCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 589999999999999999999999999999 9999999999999999999999999877777776 4555555443 579
Q ss_pred eEEEEecCCcCCCccceeeEEEecC
Q psy9251 88 YRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 88 ~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
||+.+|+|+.+||+++|+|+||+||
T Consensus 79 ~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 79 LNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred eEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999996
No 6
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.96 E-value=6e-29 Score=162.80 Aligned_cols=96 Identities=25% Similarity=0.459 Sum_probs=79.4
Q ss_pred cCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCCCceEEEEecC
Q psy9251 17 EVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLTDGYRIHVNNG 95 (121)
Q Consensus 17 ~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n~g 95 (121)
+||++..+|||||.++||.|.+ |.++||+||+||+|++++.+|++++...+..+.. +++.+.+..+ ++||++..|+|
T Consensus 1 ~~e~~~~vv~e~~~~~~~~~~~-p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~-~~~~~~~~~~g 78 (98)
T PF01230_consen 1 RGEIPARVVYEDDHFVAFLDIF-PISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFG-PDGYNVIINNG 78 (98)
T ss_dssp TTSSHCEEEEE-SSEEEEEESS-TSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEES
T ss_pred CCCCCeeEEEECCCEEEEEcCC-CCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccc-cceeeccccch
Confidence 5789999999999999999999 9999999999999999999999887555544444 3333333333 57999999999
Q ss_pred CcCCCccceeeEEEecCCC
Q psy9251 96 PLAEQFYDWLYLDIFADKR 114 (121)
Q Consensus 96 ~~agq~v~HlHlHIip~~~ 114 (121)
+.+||+|+|+|+|||||.+
T Consensus 79 ~~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 79 PAAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp GGGTSSSSS-EEEEEEEST
T ss_pred hhhcCccCEEEEEEecccC
Confidence 9999999999999999864
No 7
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.96 E-value=2.5e-28 Score=166.58 Aligned_cols=102 Identities=18% Similarity=0.251 Sum_probs=90.8
Q ss_pred CceeccccCccC-ccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHH-HHHHHHHcCCCCc
Q psy9251 10 SSILPHHEVSHN-LTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLV-AGKITKMMNLTDG 87 (121)
Q Consensus 10 ~~~~~~~~~~~~-~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~-~~~~~~~~~~~~g 87 (121)
|.||.+++++.+ .++|||++.++||.|++ |.++||+||+||+|++++.+|++++...|..++.. ++.+.+..+ ++|
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~-p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~-~~~ 78 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLY-PYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYK-PDG 78 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCC-CCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 789999999987 89999999999999999 99999999999999999999999998888887774 444444333 679
Q ss_pred eEEEEecCCcCCCccceeeEEEecCC
Q psy9251 88 YRIHVNNGPLAEQFYDWLYLDIFADK 113 (121)
Q Consensus 88 ~~~~~n~g~~agq~v~HlHlHIip~~ 113 (121)
||+++|+|+.+||+++|+|+|||||.
T Consensus 79 ~n~~~~~g~~~gq~v~H~HiHiiPR~ 104 (126)
T cd01275 79 FNIGINDGKAGGGIVPHVHIHIVPRW 104 (126)
T ss_pred eEEEEeCCcccCCCcCEEEEEEeCCc
Confidence 99999999999999999999999984
No 8
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.95 E-value=6.9e-28 Score=159.17 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=89.1
Q ss_pred CceeccccCcc--CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHH-HHHHcCC-C
Q psy9251 10 SSILPHHEVSH--NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGK-ITKMMNL-T 85 (121)
Q Consensus 10 ~~~~~~~~~~~--~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~-~~~~~~~-~ 85 (121)
|.||.+++++. +.++||+||.++||.|++ |.+|||+||+||+|+.++.+|++++.++|+++++.+.+ +.+..++ +
T Consensus 2 c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~-p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 2 CHFCDIAKRRDPDPEDQVYEDDRVVVFKDIY-PKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CccccCccCCCCCCccEEEeCCCEEEEECCC-CCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88999999987 689999999999999999 99999999999999999999999999999999997666 5454334 5
Q ss_pred CceEEEEecCCcCCCccceeeEEEec
Q psy9251 86 DGYRIHVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 86 ~g~~~~~n~g~~agq~v~HlHlHIip 111 (121)
+|||+++|.||. |+|+|+|+|||.
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 699999999986 899999999984
No 9
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.94 E-value=3.2e-26 Score=145.62 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=71.9
Q ss_pred EEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCCCceEEEEecCCcCCCccc
Q psy9251 25 IYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLTDGYRIHVNNGPLAEQFYD 103 (121)
Q Consensus 25 v~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n~g~~agq~v~ 103 (121)
|||||.++||.|++ |.++||+||+||+|+.++.+|++++...+..+++ +++++.+..+ .++||+.+|+|+.+||+++
T Consensus 1 ~~e~~~~~a~~~~~-p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~n~g~~~g~~v~ 78 (86)
T cd00468 1 VPDDEHSFAFVNLK-PAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGN-VPSLTVFVNDGAAAGQSVP 78 (86)
T ss_pred CeecCcEEEEECCC-CCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEcCCccCCCcCC
Confidence 68999999999999 9999999999999999999999987655555544 3344333323 5699999999999999999
Q ss_pred eeeEEEec
Q psy9251 104 WLYLDIFA 111 (121)
Q Consensus 104 HlHlHIip 111 (121)
|+|+||||
T Consensus 79 H~H~hiiP 86 (86)
T cd00468 79 HVHLHVLP 86 (86)
T ss_pred EEEEEeCC
Confidence 99999998
No 10
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.91 E-value=7.2e-25 Score=148.20 Aligned_cols=100 Identities=19% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecC-CCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC---
Q psy9251 9 RSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKY-NVPNMNYLIAENKTLYGHLLLVAGKITKMMNL--- 84 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~-Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~--- 84 (121)
+|.||.+.+++.+.+++||||.|++|.|++ |+++.|+|||||+ |+.++.+|+.++.++|.+|...++++.+..+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~-P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~ 79 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIY-PKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDL 79 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT--SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCC-CCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 488999999999999999999999999999 9999999999999 99999999999999999999999988887642
Q ss_pred -CCceEEEEecCCcCCCccceeeEEEecCC
Q psy9251 85 -TDGYRIHVNNGPLAEQFYDWLYLDIFADK 113 (121)
Q Consensus 85 -~~g~~~~~n~g~~agq~v~HlHlHIip~~ 113 (121)
.+.++++++.+ +|++|||+||++..
T Consensus 80 ~~~~~~~gfH~~----PS~~HLHlHvi~~~ 105 (116)
T PF11969_consen 80 DSDDIRLGFHYP----PSVYHLHLHVISPD 105 (116)
T ss_dssp EGGGEEEEEESS-----SSSS-EEEEEETT
T ss_pred chhhhcccccCC----CCcceEEEEEccCC
Confidence 34677776654 59999999999954
No 11
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=99.91 E-value=5e-24 Score=167.11 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=92.7
Q ss_pred CCCCceeccccCccC--ccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcC
Q psy9251 7 QDRSSILPHHEVSHN--LTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMN 83 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~ 83 (121)
.++|.||.++++|.+ .++||||+.|+||+|++ |.+|||+||+||+|+.++.+|++++...|+.+++ +++++.+.++
T Consensus 193 ~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~-p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~ 271 (346)
T PRK11720 193 HGSPLLVDYVQRELADGERIVVETEHWLAVVPYW-AAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQ 271 (346)
T ss_pred cCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccc-cCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 478999999999987 59999999999999999 9999999999999999999999999888888777 6666666665
Q ss_pred CCCceEEEEecCCcC--CCccceeeEEEecC
Q psy9251 84 LTDGYRIHVNNGPLA--EQFYDWLYLDIFAD 112 (121)
Q Consensus 84 ~~~g~~~~~n~g~~a--gq~v~HlHlHIip~ 112 (121)
.+.+||+++|+++.+ +|+++|+|+||+|+
T Consensus 272 ~~~pyn~~~h~~p~~~~~~~~~H~HihiiPr 302 (346)
T PRK11720 272 CSFPYSMGWHGAPFNGEENDHWQLHAHFYPP 302 (346)
T ss_pred CCCCCceeEEecccCCCCCeeEEEEEEEeCC
Confidence 444799999999864 46799999999997
No 12
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=99.90 E-value=1.5e-23 Score=164.54 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=92.3
Q ss_pred CCCCceeccccCcc--CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcC
Q psy9251 7 QDRSSILPHHEVSH--NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMN 83 (121)
Q Consensus 7 ~~~~~~~~~~~~~~--~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~ 83 (121)
.++|.||.++++|+ +.++||||+.|+||+|++ |.+|||+||+||+|+.++.+|++++...|+.+++ +++++.+.++
T Consensus 193 ~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~-p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~ 271 (347)
T TIGR00209 193 HKSPMLVDYVKRELADKSRTVVETEHWIAVVPYW-AIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFE 271 (347)
T ss_pred cCCccHHHHHHhHhhcCCeEEEECCCEEEEeccC-CCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999987 589999999999999999 9999999999999999999999999888888777 5666666555
Q ss_pred CCCceEEEEecCCcCCC--ccceeeEEEecCC
Q psy9251 84 LTDGYRIHVNNGPLAEQ--FYDWLYLDIFADK 113 (121)
Q Consensus 84 ~~~g~~~~~n~g~~agq--~v~HlHlHIip~~ 113 (121)
..-+||+++|+++.+|+ ..+|+|+||+|+.
T Consensus 272 ~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 272 TSFPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCCCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 43379999999998765 5677999999973
No 13
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=99.90 E-value=4.1e-23 Score=160.98 Aligned_cols=107 Identities=17% Similarity=0.296 Sum_probs=94.9
Q ss_pred CCCCceeccccCccC--ccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcC
Q psy9251 7 QDRSSILPHHEVSHN--LTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMN 83 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~--~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~ 83 (121)
.++|.||.+++++.+ .++|||||.|+||.|++ |..|||+||+||+|+.++.+|++++...|+++++ +++++.+..+
T Consensus 183 ~g~clfcdii~~E~~~~~riV~end~~va~~p~~-~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~ 261 (329)
T cd00608 183 HGRCLLCDYLKLELESKERIVVENEHFVAVVPFW-ARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFN 261 (329)
T ss_pred cCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecC-CCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368999999999876 89999999999999999 9999999999999999999999999888888888 5667766666
Q ss_pred CCCceEEEEecCCcC----CCccceeeEEEecCCC
Q psy9251 84 LTDGYRIHVNNGPLA----EQFYDWLYLDIFADKR 114 (121)
Q Consensus 84 ~~~g~~~~~n~g~~a----gq~v~HlHlHIip~~~ 114 (121)
...+||+++|.++.. +++++|+|+||+|+.+
T Consensus 262 ~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 262 CSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 455899999999875 4799999999999843
No 14
>PLN02643 ADP-glucose phosphorylase
Probab=99.87 E-value=5.3e-22 Score=155.21 Aligned_cols=102 Identities=21% Similarity=0.327 Sum_probs=89.4
Q ss_pred CCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCC
Q psy9251 7 QDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLT 85 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~ 85 (121)
.++|.||.++++++ +||||+.|+||.|++ |..|||+||+||+|+.++.+|++++...|+.+++ +++++.+.++.+
T Consensus 197 ~g~Clfcdii~~E~---iV~en~~f~Af~p~a-p~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~ 272 (336)
T PLN02643 197 TGKCSLCEVVKKDL---LIDESSHFVSIAPFA-ATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDP 272 (336)
T ss_pred hCCCcHHHHHhCcc---EEEeCCCEEEEeccc-cCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 37899999999998 999999999999999 9999999999999999999999999988988887 677777766655
Q ss_pred CceEEEEecCCc--CCC--ccceeeEEEecCC
Q psy9251 86 DGYRIHVNNGPL--AEQ--FYDWLYLDIFADK 113 (121)
Q Consensus 86 ~g~~~~~n~g~~--agq--~v~HlHlHIip~~ 113 (121)
+||+++|+|+. +++ ...|+|+||+|+.
T Consensus 273 -pyN~~~~~~P~~~~~~~~~~~H~hihi~PRl 303 (336)
T PLN02643 273 -PYNYMIQTSPLGVEESNLPYTHWFLQIVPQL 303 (336)
T ss_pred -CceeeeecCCCccccCcccceEEEEEEecCc
Confidence 89999999997 455 4466677999974
No 15
>KOG3379|consensus
Probab=99.87 E-value=1.7e-21 Score=133.32 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=78.5
Q ss_pred CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcCCC
Q psy9251 21 NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQ 100 (121)
Q Consensus 21 ~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~agq 100 (121)
+..|+|+++.++||.++. |..|||+||+|++-++++.||+++|...|-...+.+.++.+......++++.+.+|+.|||
T Consensus 16 ~~~VFykT~~sfafvNlk-PvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQ 94 (150)
T KOG3379|consen 16 PDHVFYKTKHSFAFVNLK-PVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQ 94 (150)
T ss_pred cceEEEeccceEEEEecc-ccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCc
Confidence 478999999999999999 9999999999999999999999988544444444444444443334579999999999999
Q ss_pred ccceeeEEEecCCCCC
Q psy9251 101 FYDWLYLDIFADKRLG 116 (121)
Q Consensus 101 ~v~HlHlHIip~~~~~ 116 (121)
+|+|+|+||+|+..-+
T Consensus 95 TVpHvHvHIlPR~~gD 110 (150)
T KOG3379|consen 95 TVPHVHVHILPRKAGD 110 (150)
T ss_pred ccceeEEEEccccccc
Confidence 9999999999986543
No 16
>KOG4359|consensus
Probab=99.72 E-value=5.4e-17 Score=111.76 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=87.7
Q ss_pred CCCCCceeccccCccC--ccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcC
Q psy9251 6 FQDRSSILPHHEVSHN--LTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMN 83 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~ 83 (121)
-...|.||-+..++.+ .-...||+.+++|-|++ |.+..|+||+||+|+.+..+|+.++.+++..|+...+.+.++..
T Consensus 29 ~~~~C~FCDia~r~~~~~ell~~En~~~V~fkDik-PaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~ 107 (166)
T KOG4359|consen 29 PKSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIK-PAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNN 107 (166)
T ss_pred CCCceEEEEeecccCCCCceeEecCCcEEEEecCC-ccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhc
Confidence 3568999998876553 34556999999999999 99999999999999999999999999999999998887665543
Q ss_pred C--CCceEEEEecCCcCCCccceeeEEEecC
Q psy9251 84 L--TDGYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 84 ~--~~g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
. ++-.+++++..|+ .||.|+|+|+|.+
T Consensus 108 ~td~~~~r~GFHLPPf--~SV~HLHlH~I~P 136 (166)
T KOG4359|consen 108 FTDFTNVRMGFHLPPF--CSVSHLHLHVIAP 136 (166)
T ss_pred cCCchheeEeccCCCc--ceeeeeeEeeecc
Confidence 2 4567889988887 6999999999963
No 17
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.53 E-value=4.8e-14 Score=100.73 Aligned_cols=103 Identities=17% Similarity=0.335 Sum_probs=65.9
Q ss_pred CCCceeccccCc--cCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCC
Q psy9251 8 DRSSILPHHEVS--HNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNL 84 (121)
Q Consensus 8 ~~~~~~~~~~~~--~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~ 84 (121)
++|-+|-+.+-| ...++|++|+.|++|.+.+ ...|+.++|+||+|+.++.+|+++|...|+.++. +++++.+..+.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~-a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~ 91 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFA-ARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFET 91 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT---STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECc-ccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCC
Confidence 677788877554 4789999999999999999 9999999999999999999999999888888877 67777666554
Q ss_pred CCceEEEEecCCcCCCccc-eeeEEEec
Q psy9251 85 TDGYRIHVNNGPLAEQFYD-WLYLDIFA 111 (121)
Q Consensus 85 ~~g~~~~~n~g~~agq~v~-HlHlHIip 111 (121)
+..|+++++..|..+..-. ++|+|+-|
T Consensus 92 ~~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 92 SFPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp ---EEEEEE---SSSS--TT--EEEEE-
T ss_pred CCCCchhhhcCCCCcccchhhhhccccc
Confidence 5589999999887655432 25566554
No 18
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.35 E-value=2.4e-12 Score=100.49 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=87.1
Q ss_pred CCCCCceeccccCccC--ccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHc
Q psy9251 6 FQDRSSILPHHEVSHN--LTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMM 82 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~ 82 (121)
.+..|-+|.+++.|.. .|+|+|||.++||.+++ +..|.+++|+||+|+.++.+|++++...|+.+++ +..++.+..
T Consensus 183 ~~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~-a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~ 261 (338)
T COG1085 183 ENGSCMYCDLVEREKGDGERIVVENDHFLAFVPFW-ARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLF 261 (338)
T ss_pred hcCCchHHHHHHHHhccCceEEecCceeEEecccc-ccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 5778889998877665 69999999999999999 9999999999999999999999999888888776 455555544
Q ss_pred CCCCceEEEEecCCcC-CCccceeeEEEec
Q psy9251 83 NLTDGYRIHVNNGPLA-EQFYDWLYLDIFA 111 (121)
Q Consensus 83 ~~~~g~~~~~n~g~~a-gq~v~HlHlHIip 111 (121)
+..-.|+++++..+.. .+..+|+|+|++|
T Consensus 262 ~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 262 GNSFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred CCCCceeeeeecCCCCcccccceEEEEEcc
Confidence 4333599999876653 4667899999999
No 19
>KOG0562|consensus
Probab=99.16 E-value=1.9e-11 Score=86.58 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=67.8
Q ss_pred CccEEEEc-CcEEEEEeCCCCCCCeEEEEEecC-CCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcC
Q psy9251 21 NLTIIYED-TQCIAWEEMYHKVAPFHYKLVPKY-NVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLA 98 (121)
Q Consensus 21 ~~~iv~e~-d~~va~~d~~~P~~~gH~LViPk~-Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~a 98 (121)
+.+++-++ |.++++.|.+ |++..|+||+||+ -+.++.....++..+|.++..+...+...++..+ ....++.|.+|
T Consensus 14 ~e~V~~es~d~vvvIrD~f-PKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~-~~~~f~vG~Ha 91 (184)
T KOG0562|consen 14 PENVYIESPDDVVVIRDKF-PKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEA-LCNYFRVGFHA 91 (184)
T ss_pred cceeeccCcccEEEEcccC-ccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchh-hhhheeeeecc
Confidence 34456666 8999999999 9999999999964 4677777667777777777767766666554322 33445567778
Q ss_pred CCccceeeEEEecCC
Q psy9251 99 EQFYDWLYLDIFADK 113 (121)
Q Consensus 99 gq~v~HlHlHIip~~ 113 (121)
++|+.++|+|||..+
T Consensus 92 vPSM~~LHLHVISkD 106 (184)
T KOG0562|consen 92 VPSMNNLHLHVISKD 106 (184)
T ss_pred CcchhheeEEEeecc
Confidence 889999999999854
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=99.07 E-value=5.8e-09 Score=71.06 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=78.6
Q ss_pred CCCCCCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHc
Q psy9251 3 RSQFQDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82 (121)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~ 82 (121)
.+.-+|+|.||=....-....||.-++.++...+.. |..+||+||+|-.|+.++.+++++..+++....+..++..+..
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg-~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~ 84 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKG-PLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQ 84 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCC-CccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 344567888886555545678899999999888889 9999999999999999999999998888888777666666655
Q ss_pred CCCCceEEEEecCCcCCCccceeeEEEecC
Q psy9251 83 NLTDGYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 83 ~~~~g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
+. +. +.+-+. .....|.|+.+||-
T Consensus 85 ~~--~v-vf~E~~---~~~~~H~~iq~vPv 108 (121)
T PF04677_consen 85 GK--DV-VFFERV---RKRNPHTHIQCVPV 108 (121)
T ss_pred CC--CE-EEEEEe---CCCCcEEEEEEEEc
Confidence 42 12 333222 34579999999993
No 21
>KOG2958|consensus
Probab=99.07 E-value=3.5e-10 Score=86.58 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=76.3
Q ss_pred cCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCCCceEEEEecCCcC
Q psy9251 20 HNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLTDGYRIHVNNGPLA 98 (121)
Q Consensus 20 ~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n~g~~a 98 (121)
.+.+||.||++|+++.+++ ..-|+.+|+|||+|+.++.+|++.+...|+.+++ +..++.+.....-.|+++++..|..
T Consensus 213 ~Kervv~enehfivvvPyw-A~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~KydnlfetsfPYsmg~h~aPl~ 291 (354)
T KOG2958|consen 213 EKERVVVENEHFIVVVPYW-ATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYDNLFETSFPYSMGIHGAPLG 291 (354)
T ss_pred hhceEEeecCceEEEeehh-hcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHHHhhccCCccccccccCCcc
Confidence 4679999999999999999 9999999999999999999999999999999888 6777777665434699999877642
Q ss_pred --CCcc-ce-eeEEEecC
Q psy9251 99 --EQFY-DW-LYLDIFAD 112 (121)
Q Consensus 99 --gq~v-~H-lHlHIip~ 112 (121)
++.. .| +|+|..|.
T Consensus 292 ~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 292 STEQENYNHWLHMHFYPP 309 (354)
T ss_pred cccccccchhhhhhcccc
Confidence 2333 33 59999984
No 22
>KOG2476|consensus
Probab=98.29 E-value=1.6e-05 Score=64.54 Aligned_cols=101 Identities=11% Similarity=-0.029 Sum_probs=77.0
Q ss_pred CCCCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC
Q psy9251 5 QFQDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL 84 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~ 84 (121)
+-++.|-||=.--.-...-||--++.|+.-++.. |.+.+|+||||-.|++++..|+++...++.+.....+++.+..|.
T Consensus 316 ~~pg~CwFCLSnP~vEkHLIVsIG~~~YlAlaKG-pLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~ 394 (528)
T KOG2476|consen 316 IPPGSCWFCLSNPNVEKHLIVSIGNHFYLALAKG-PLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGK 394 (528)
T ss_pred CCCCceEEEecCCChhhheEEEecceeEEeecCC-CCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566666665544445667899999999999999 999999999999999999999998888888877777787776653
Q ss_pred CCceEEEEecCCcCCCccceeeEEEecC
Q psy9251 85 TDGYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 85 ~~g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
..+++-.- ..-.-|+|+-+||-
T Consensus 395 ---~~vvfE~~---~~rs~Hlq~Qvipv 416 (528)
T KOG2476|consen 395 ---DAVVFERQ---SYRSVHLQLQVIPV 416 (528)
T ss_pred ---eEEEEEee---cccceeeEEEEEec
Confidence 22333211 12347999999993
No 23
>KOG3969|consensus
Probab=98.25 E-value=1.4e-05 Score=61.13 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=68.3
Q ss_pred cCccCccEEEEcCc----EEEEEeCC-CCCC--CeEEEEEecCC-CCCcCCCChhHHHHHHHHHHHHHH-HHHHcCC-CC
Q psy9251 17 EVSHNLTIIYEDTQ----CIAWEEMY-HKVA--PFHYKLVPKYN-VPNMNYLIAENKTLYGHLLLVAGK-ITKMMNL-TD 86 (121)
Q Consensus 17 ~~~~~~~iv~e~d~----~va~~d~~-~P~~--~gH~LViPk~H-v~~~~~L~~~~~~~l~~l~~~~~~-~~~~~~~-~~ 86 (121)
.+....++|||+.+ |+.+.|+. .+.+ .-++|.|-.++ +.++.||++++.++|..+...++. +.+..++ ++
T Consensus 155 ~~aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~d 234 (310)
T KOG3969|consen 155 KKAEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPD 234 (310)
T ss_pred ccccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 44556789998754 78888854 3444 55777666555 999999999999999888775554 4555565 66
Q ss_pred ceEEEEecCCcCCCccceeeEEEecC
Q psy9251 87 GYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 87 g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
-.++.++-- +|.+|+|+||++-
T Consensus 235 qlrmf~HYq----PSyYHlHVHi~ni 256 (310)
T KOG3969|consen 235 QLRMFFHYQ----PSYYHLHVHIVNI 256 (310)
T ss_pred hEEEEEEec----CceEEEEEEEEec
Confidence 788888754 5899999999983
No 24
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.79 E-value=0.00012 Score=58.80 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=49.2
Q ss_pred EcCcEEEEEeCCCCCCCeEEEEEecC--CCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcCCCccce
Q psy9251 27 EDTQCIAWEEMYHKVAPFHYKLVPKY--NVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQFYDW 104 (121)
Q Consensus 27 e~d~~va~~d~~~P~~~gH~LViPk~--Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~agq~v~H 104 (121)
++....++.+.+ |..+||+|++|+. |.+-. ++. +++..+..++...+ .++|++++|. .-|..++.|
T Consensus 167 ~~s~~~VlINvs-PI~~gH~LlvP~~~~~lPQ~--i~~-------~~l~la~~~a~~~~-~p~frvgYNS-lGA~ASvNH 234 (403)
T PLN03103 167 SNSPNVVAINVS-PIEYGHVLLVPRVLDCLPQR--IDP-------DSFLLALYMAAEAN-NPYFRVGYNS-LGAFATINH 234 (403)
T ss_pred CCCccEEEEeCC-CCccCeEEEcCCcccCCCeE--ecH-------HHHHHHHHHHHhcC-CCcEEEEecC-CccccCcce
Confidence 355568889999 9999999999875 44322 333 22233444443333 2479999986 444569999
Q ss_pred eeEEEec
Q psy9251 105 LYLDIFA 111 (121)
Q Consensus 105 lHlHIip 111 (121)
+|+|..-
T Consensus 235 LHFQa~y 241 (403)
T PLN03103 235 LHFQAYY 241 (403)
T ss_pred eeeeecc
Confidence 9999886
No 25
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=97.44 E-value=0.0009 Score=50.76 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=63.8
Q ss_pred CCCceeccccCc-cCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCC---CChhHHHHHHHHHHHHHHHHHHcC
Q psy9251 8 DRSSILPHHEVS-HNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNY---LIAENKTLYGHLLLVAGKITKMMN 83 (121)
Q Consensus 8 ~~~~~~~~~~~~-~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~---L~~~~~~~l~~l~~~~~~~~~~~~ 83 (121)
++|.-..-.++. .|+..|.....++++.| +..|.|+|+||-..++-+.+ +++.....+......-.-+.++.|
T Consensus 40 ~qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD---~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g 116 (252)
T PRK05471 40 EQCLPNQQQNQNPAPCAEVDPQAGYVLLKD---RNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYG 116 (252)
T ss_pred hhcCCchhccCCCCCCeeEccCCCeEEEec---CCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhC
Confidence 344444333332 47888888999999997 66789999999999887776 444443344443333233455555
Q ss_pred C--CC-ceEEEEecCCcCCCccceeeEEEe
Q psy9251 84 L--TD-GYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 84 ~--~~-g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
. ++ ...+.+|. ..|.|-.+||+||=
T Consensus 117 ~pipd~~lsLaINS--~~gRSQnQLHIHIs 144 (252)
T PRK05471 117 KPIPDSAVSLAINS--RYGRTQDQLHIHIS 144 (252)
T ss_pred CCCChhheEEEecC--CCCccccceeeehh
Confidence 3 33 45566663 34788899999985
No 26
>KOG2477|consensus
Probab=97.43 E-value=0.0017 Score=53.56 Aligned_cols=101 Identities=16% Similarity=-0.014 Sum_probs=70.5
Q ss_pred CCCCceeccccCccCccEEEEcCcEEEEEe-CCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCC
Q psy9251 7 QDRSSILPHHEVSHNLTIIYEDTQCIAWEE-MYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLT 85 (121)
Q Consensus 7 ~~~~~~~~~~~~~~~~~iv~e~d~~va~~d-~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~ 85 (121)
.|+|.+|=.-+..-...||--.+..+..++ .. ++..||++|+|-.|..+-..|+++.++++.-+...+-.+....+..
T Consensus 406 lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~-gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d 484 (628)
T KOG2477|consen 406 LDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQP-GLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD 484 (628)
T ss_pred hhhchhhhcccccccceeEEeccceeEeccccC-ccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 588998876666666677777776666555 55 8999999999999999888899988777776666433333333431
Q ss_pred CceEEEEecCCcCCCccceeeEEEecC
Q psy9251 86 DGYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 86 ~g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
. +++-+.+. -+.-+|+-+|-||-
T Consensus 485 --v-iFyE~a~~-l~rrpH~~IeCIPv 507 (628)
T KOG2477|consen 485 --V-IFYENAPS-LQRRPHTAIECIPV 507 (628)
T ss_pred --e-EEEeccCc-cccCCceeEEEeec
Confidence 1 23333332 24579999999994
No 27
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00037 Score=52.72 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=59.4
Q ss_pred cCccCccEEEEcCc----EEEEEeCC-CCCC--CeEEE-EEecCCCCCcCCCChhHHHHHHHHHHH-HHHHHHHcCC-CC
Q psy9251 17 EVSHNLTIIYEDTQ----CIAWEEMY-HKVA--PFHYK-LVPKYNVPNMNYLIAENKTLYGHLLLV-AGKITKMMNL-TD 86 (121)
Q Consensus 17 ~~~~~~~iv~e~d~----~va~~d~~-~P~~--~gH~L-ViPk~Hv~~~~~L~~~~~~~l~~l~~~-~~~~~~~~~~-~~ 86 (121)
+|....+||||+.. |+++.|.. .+.+ .-|++ |+-+..++++.||...++..+..+-.- .-.+-...+. ++
T Consensus 150 ~~ae~erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n 229 (305)
T COG5075 150 EGAENERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPN 229 (305)
T ss_pred cccccceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChh
Confidence 67778899999986 56677743 2443 45666 555566999999999887666654431 1112222233 34
Q ss_pred ceEEEEecCCcCCCccceeeEEEec
Q psy9251 87 GYRIHVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 87 g~~~~~n~g~~agq~v~HlHlHIip 111 (121)
-.++.++-. +|.+|+|+||+-
T Consensus 230 ~l~mfvHY~----PsYyhlHvHI~n 250 (305)
T COG5075 230 ELRMFVHYQ----PSYYHLHVHIVN 250 (305)
T ss_pred HeEEEEEec----cceEEEEEEEEe
Confidence 566666643 588999999985
No 28
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=97.30 E-value=0.0017 Score=49.27 Aligned_cols=97 Identities=10% Similarity=0.163 Sum_probs=63.6
Q ss_pred CCceeccccC-ccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCC---CChhHHHHHHHHHHHHHHHHHHcCC
Q psy9251 9 RSSILPHHEV-SHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNY---LIAENKTLYGHLLLVAGKITKMMNL 84 (121)
Q Consensus 9 ~~~~~~~~~~-~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~---L~~~~~~~l~~l~~~~~~~~~~~~~ 84 (121)
+|.-..-.+| -.|+..|..+..++++.| +..|.|+|++|-..++-+.+ +++.....+......=.-+.++.|-
T Consensus 40 qCvp~~~~~~~p~PC~~Vd~~~gyvvlKD---~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~ 116 (250)
T TIGR00672 40 ECLPNQQQNQNPSPCAEVKPNAGYVVLKD---LNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQ 116 (250)
T ss_pred hcCCchhccCCCCCcceEcCCCCeEEEeC---CCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCC
Confidence 3443333333 347888888899999999 55789999999999887776 4554444454433332334555553
Q ss_pred --CC-ceEEEEecCCcCCCccceeeEEEe
Q psy9251 85 --TD-GYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 85 --~~-g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
++ ...+.+|. ..|.|-.+||+||=
T Consensus 117 pipd~~lsLaINS--~~gRSQnQLHIHIs 143 (250)
T TIGR00672 117 PIPDRAVSLAINS--RTGRSQNHFHIHIS 143 (250)
T ss_pred CCChhheeEEecC--CCCcccccceeeHh
Confidence 33 45566663 34788899999984
No 29
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=97.14 E-value=0.002 Score=48.11 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=48.5
Q ss_pred ccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCC---CChhHHHHHHHHHHHHHHHHHHcCC--C-CceEEEE
Q psy9251 19 SHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNY---LIAENKTLYGHLLLVAGKITKMMNL--T-DGYRIHV 92 (121)
Q Consensus 19 ~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~---L~~~~~~~l~~l~~~~~~~~~~~~~--~-~g~~~~~ 92 (121)
-.|+..|-.+..++++-| +..+.|+|+||-..++-+.+ +++.....++.....=..+.++.|- + +.+.+.+
T Consensus 23 p~pC~~Vd~~~gyvvlKd---~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaI 99 (222)
T PF02611_consen 23 PAPCAQVDLQQGYVVLKD---RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAI 99 (222)
T ss_dssp -TTSSEEETTTTEEEEE----SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEE
T ss_pred CCCCeEEcCCCCEEEEeC---CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEe
Confidence 357888888999999998 55689999999999887776 4445444455544322233444443 3 4667777
Q ss_pred ecCCcCCCccceeeEEEe
Q psy9251 93 NNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 93 n~g~~agq~v~HlHlHIi 110 (121)
|.. .|.|-.+||+||=
T Consensus 100 NS~--~gRsQdQLHIHis 115 (222)
T PF02611_consen 100 NSQ--YGRSQDQLHIHIS 115 (222)
T ss_dssp B-G--GG-S--S--EEEE
T ss_pred cCc--cCccccceEeEhh
Confidence 743 4678899999985
No 30
>KOG2720|consensus
Probab=97.01 E-value=0.00059 Score=53.94 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=43.6
Q ss_pred EcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcCCCccceee
Q psy9251 27 EDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLY 106 (121)
Q Consensus 27 e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~agq~v~HlH 106 (121)
++.. ++..+.. |+..||+||||+----.-.-++-+. +..+-.+..... .+-|++++|.. .+-.||.|||
T Consensus 165 e~~~-vvaIN~s-Pie~~H~LiiP~V~kc~pQrit~~a-------l~lav~~m~~~d-d~~frlgyNSl-ga~AsVNHLH 233 (431)
T KOG2720|consen 165 ENSP-VVAINVS-PIEYGHVLIIPRVLKCLPQRITHKA-------LLLAVTMMAEAD-DPYFRLGYNSL-GAFASVNHLH 233 (431)
T ss_pred ccCc-eEEEecC-ccccCcEEEecchhccCcceeeHHH-------HHHHHHHHHhcC-Cchhheecccc-hhhhhhhhhh
Confidence 3444 6677888 9999999999985422111233221 112222222212 23588888762 2346999999
Q ss_pred EEEec
Q psy9251 107 LDIFA 111 (121)
Q Consensus 107 lHIip 111 (121)
+|..-
T Consensus 234 fha~y 238 (431)
T KOG2720|consen 234 FHAYY 238 (431)
T ss_pred hhhhh
Confidence 99864
No 31
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=96.73 E-value=0.015 Score=43.23 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=60.1
Q ss_pred CCCceeccccCc-cCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCC---CChhHHHHHHHHHHHHHH-HHHHc
Q psy9251 8 DRSSILPHHEVS-HNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNY---LIAENKTLYGHLLLVAGK-ITKMM 82 (121)
Q Consensus 8 ~~~~~~~~~~~~-~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~---L~~~~~~~l~~l~~~~~~-~~~~~ 82 (121)
|+|-.---.++. .|+..|-++..++++.|.+ -|..+|++|-.+++-+.+ +++.....+. +...++. +.++.
T Consensus 40 e~C~p~~~~~~~paPCaeV~~~AG~av~Kd~~---gPlQyLLmPt~rItGiEsP~L~e~atpNyf~-~AWqAR~fms~ky 115 (252)
T COG2134 40 ERCLPNYQQNQNPAPCAEVKPQAGYAVLKDRN---GPLQYLLMPTARITGIESPLLLEPATPNYFY-LAWQARDFMSKKY 115 (252)
T ss_pred HHcCcchhccCCCCCceeecCCCceEEEeccC---CCceeEeeeeecccCCcChhhcCCCCccHHH-HHHHHHHHHHHHh
Confidence 344443333443 3788899999999999966 467889999999887776 2333222232 2223443 34444
Q ss_pred CC--CC-ceEEEEecCCcCCCccceeeEEEe
Q psy9251 83 NL--TD-GYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 83 ~~--~~-g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
|. +| ...+.+| +..|.+-+|+|+||-
T Consensus 116 g~~ipd~dvsLaIN--s~~gRtQdqlHIHIS 144 (252)
T COG2134 116 GNPIPDSDVSLAIN--SKNGRTQDQLHIHIS 144 (252)
T ss_pred CCCCCccceEEEec--CccCccccceEEEEE
Confidence 53 33 4445554 445678899999985
No 32
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0043 Score=47.04 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=48.7
Q ss_pred EEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcCCCccceeeEEEe
Q psy9251 31 CIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 31 ~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
...+++.+ |..+.|+||+.|+--..=+.||..| +..+.. -++. + +| -+..|.||.+|.|-+|=|+-++
T Consensus 94 h~~llNKF-~VVdeHlLiVTrefedQ~s~LTl~D---f~ta~~---vL~~---l-dg-lvFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 94 HKLLLNKF-PVVDEHLLIVTREFEDQESALTLAD---FTTAYA---VLCG---L-DG-LVFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred HhhhhhcC-CcccceeEEeehhhhhccccCCHHH---HHHHHH---HHhc---c-cc-eEEecCCCCcCcCCCccceeEe
Confidence 44567888 9999999999998654444566544 333222 1221 1 34 3667889999999999999999
Q ss_pred c
Q psy9251 111 A 111 (121)
Q Consensus 111 p 111 (121)
|
T Consensus 162 p 162 (298)
T COG4360 162 P 162 (298)
T ss_pred e
Confidence 8
No 33
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.55 E-value=0.018 Score=45.15 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCC--ceE-EEEecCCcCCCccceeeEEEecC
Q psy9251 45 HYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTD--GYR-IHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 45 H~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~--g~~-~~~n~g~~agq~v~HlHlHIip~ 112 (121)
-++|..-+|..++.+++.++. ..++.+.++-.+.+.-.. .|- +.-|-|+.+|.|+.|-|.-|+.-
T Consensus 95 eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~ 162 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEI---REVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWAL 162 (329)
T ss_pred EEEEECCcccCChhhCCHHHH---HHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeC
Confidence 567889999999999999874 444443222222222111 344 44556999999999999998863
No 34
>PLN02643 ADP-glucose phosphorylase
Probab=96.11 E-value=0.063 Score=42.39 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=42.3
Q ss_pred EEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCC--ceEE-EEecCCcCCCccceeeEEEec
Q psy9251 45 HYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTD--GYRI-HVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 45 H~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~--g~~~-~~n~g~~agq~v~HlHlHIip 111 (121)
.++|..-+|..++.+|+.+++ ..++.+-++-.+.++-.+ .|-. .-|-|..+|.|+.|-|-=|+.
T Consensus 109 eVii~sp~H~~~l~~~~~~~i---~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 109 DVVIETPVHSVQLSDLPARHI---GEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEeCCccCCChHHCCHHHH---HHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 456777889999999999874 444443332222332211 3444 445599999999999998876
No 35
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=95.53 E-value=0.22 Score=39.55 Aligned_cols=96 Identities=8% Similarity=-0.030 Sum_probs=59.6
Q ss_pred CCCceeccccCccCccEEEEcCc--EEEEEeCCCCCCC----------------------eEEEEEecCCCCCcCCCChh
Q psy9251 8 DRSSILPHHEVSHNLTIIYEDTQ--CIAWEEMYHKVAP----------------------FHYKLVPKYNVPNMNYLIAE 63 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~iv~e~d~--~va~~d~~~P~~~----------------------gH~LViPk~Hv~~~~~L~~~ 63 (121)
+.|-||+-.++..+. + ..+. +.+|.+.+ |... ..++|---+|-.++.+|+.+
T Consensus 50 ~~CPfcpgne~~~~~-~--~~~w~~~rV~~N~f-Pal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~m~~~ 125 (347)
T TIGR00209 50 PDCYLCPGNKRVTGD-L--NPDYTGTYVFTNDF-AALMSDTPDAPESHDPLMRCQSARGTSRVICFSPDHSKTLPELSVA 125 (347)
T ss_pred CCCCCCCCCCCCCCC-c--CCCCceEEEEeCCC-cccccCCCCCCcCCCcccccCCCCeeEEEEEeCCCccCChhHCCHH
Confidence 358888866554433 1 2222 34666655 5442 34667778888999999998
Q ss_pred HHHHHHHHHH-HHHHHHHHcCCCCceEEEEec-CCcCCCccceeeEEEec
Q psy9251 64 NKTLYGHLLL-VAGKITKMMNLTDGYRIHVNN-GPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 64 ~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n~-g~~agq~v~HlHlHIip 111 (121)
++..+-.+.. ..+++.+ ++ .|-..|.| |..+|.|..|-|-=|+.
T Consensus 126 ~i~~v~~~~~~r~~~l~~--~i--~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 126 ALTEIVKTWQEQTAELGK--TY--PWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred HHHHHHHHHHHHHHHHHh--CC--cEEEEEeecCcccCcCCCCCceeeee
Confidence 8544444333 2333332 11 35555555 88999999999988775
No 36
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=95.45 E-value=0.21 Score=39.60 Aligned_cols=64 Identities=8% Similarity=-0.114 Sum_probs=43.4
Q ss_pred eEEEEEecCCCCCcCCCChhHHHHHHHHHH-HHHHHHHHcCCCCceEEEEe-cCCcCCCccceeeEEEec
Q psy9251 44 FHYKLVPKYNVPNMNYLIAENKTLYGHLLL-VAGKITKMMNLTDGYRIHVN-NGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 44 gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n-~g~~agq~v~HlHlHIip 111 (121)
..++|.--+|..++.+|+.+++..+-.+.. ..+++.+. -.|-..|. -|..+|.|..|-|.=|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~----i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT----YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC----CcEEEEEeecCcccCcCCCCCceeeee
Confidence 456688889999999999987544433332 23333322 13555554 489999999999988875
No 37
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=93.00 E-value=0.92 Score=36.06 Aligned_cols=105 Identities=11% Similarity=-0.044 Sum_probs=62.2
Q ss_pred CCCCCceeccc------cCccCccEEEEcCcEEEEEeCCC-C----------CCCeE--EEEEecCCCCCcCCCChhHHH
Q psy9251 6 FQDRSSILPHH------EVSHNLTIIYEDTQCIAWEEMYH-K----------VAPFH--YKLVPKYNVPNMNYLIAENKT 66 (121)
Q Consensus 6 ~~~~~~~~~~~------~~~~~~~iv~e~d~~va~~d~~~-P----------~~~gH--~LViPk~Hv~~~~~L~~~~~~ 66 (121)
.+..|-||+-. ++......+++|+.-++-.|... | ...|+ ++|.-..|-.++.+|+.++.+
T Consensus 38 ~~~~CpfC~gn~~~t~~~~~~~~~~~~~N~fp~v~~d~p~~~~~~~~~~~~~~~~g~~~VIvesp~H~~~l~~~~~~~~~ 117 (338)
T COG1085 38 HDPTCPFCPGNERTTEENPRYWHVRVFPNDFPAVSEDPPDAPGSEDPLFKIQEARGKSRVIVESPDHSKTLPELPVEEIE 117 (338)
T ss_pred cCCcCCccCCcceecccCCCCcceeecCCcchhhcCCCCCCCccccchhcccccCcceEEEEECCcccCccccCCHHHHH
Confidence 34567777744 22234456666666655554330 1 12233 445677888999999998754
Q ss_pred HHHHHHH-HHHHHHHHcCCCCceEEEEecCCcCCCccceeeEEEec
Q psy9251 67 LYGHLLL-VAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 67 ~l~~l~~-~~~~~~~~~~~~~g~~~~~n~g~~agq~v~HlHlHIip 111 (121)
.+-.+.. ..+++.+.... .-..+..|.|..+|.|..|-|.=|+.
T Consensus 118 ~vv~~~~e~~~~L~~~~~~-~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 118 EVVKLWQERVRELYEREKY-KYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred HHHHHHHHHHHHHhhccCc-ceEEeeeccCcccCccCCCCCcceee
Confidence 4444333 33344433211 12456667799999999999987765
No 38
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=87.01 E-value=1.9 Score=30.98 Aligned_cols=65 Identities=9% Similarity=-0.043 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC-CCceEEEEec-CCcCCCccceeeEEEec
Q psy9251 45 HYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL-TDGYRIHVNN-GPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 45 H~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~-~~g~~~~~n~-g~~agq~v~HlHlHIip 111 (121)
.++|---+|-.++.+|+.++...+..+. ..+....... .-.|-+++.| |..+|.|..|-|--|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~--~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAW--RDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHH--HHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHH--HHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 4556667788889999998754443332 2222221111 1146666655 88899999999988775
No 39
>PF14317 YcxB: YcxB-like protein
Probab=83.64 E-value=5.1 Score=22.52 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=24.1
Q ss_pred cEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHHHH
Q psy9251 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHL 71 (121)
Q Consensus 23 ~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l 71 (121)
.-|.|++.++.+.--. ...++|||+-. ++++.+.+..+
T Consensus 23 ~~v~e~~~~~~l~~~~-----~~~~~iPk~~f------~~~e~~~f~~~ 60 (62)
T PF14317_consen 23 KKVVETKDYFYLYLGK-----NQAFIIPKRAF------SEEEKEEFREF 60 (62)
T ss_pred EEEEEeCCEEEEEECC-----CeEEEEEHHHC------CHhHHHHHHHH
Confidence 4567888877775433 58899999842 34554445444
No 40
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=67.17 E-value=15 Score=26.79 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCC-CceEEEEecCCcCCCccceeeEEEec
Q psy9251 69 GHLLLVAGKITKMMNLT-DGYRIHVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 69 ~~l~~~~~~~~~~~~~~-~g~~~~~n~g~~agq~v~HlHlHIip 111 (121)
..+..++..+++.++.. ..|-++.++ .-.|.|+||+-
T Consensus 72 e~~~~~~~~~~~~~~~~~~~~v~~~H~------D~~h~H~Hivi 109 (242)
T PF03432_consen 72 EQAHEIAREFAEEMGPGNHQYVVVVHT------DTDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHHcCCCCcceEEEECC------CcCeeeeeEEE
Confidence 45566778888877752 244444442 24688888876
No 41
>PF00552 IN_DBD_C: Integrase DNA binding domain The structure of the C-terminal DNA binding domain.; InterPro: IPR001037 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic core, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (have been studied most carefully with respect to the structural basis of catalysis. Although the active site of avian virus integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV-1 integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0003676 nucleic acid binding; PDB: 1QMC_B 1IHV_A 1IHW_B 1C6V_X 1C0M_B 1C1A_A 1EX4_A.
Probab=64.82 E-value=13 Score=21.71 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=25.2
Q ss_pred CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCC
Q psy9251 21 NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVP 55 (121)
Q Consensus 21 ~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~ 55 (121)
|..++++.+..+++.+.. ..-.++||++.+.
T Consensus 21 P~~vL~~G~Gav~v~~~~----~~~~~wvP~R~~K 51 (55)
T PF00552_consen 21 PDPVLWWGEGAVVVKDQE----SDKPIWVPRRKVK 51 (55)
T ss_dssp EEEEEEECSSEEEEECSS----C--EEEEEGGGEE
T ss_pred hhHheeeccccEEEecCC----ccCEEEeehhHcE
Confidence 789999999999999876 3337999999865
No 42
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=63.37 E-value=9.9 Score=33.40 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCCC-ceEEEEecCCcCCCccceeeEEEec
Q psy9251 70 HLLLVAGKITKMMNLTD-GYRIHVNNGPLAEQFYDWLYLDIFA 111 (121)
Q Consensus 70 ~l~~~~~~~~~~~~~~~-g~~~~~n~g~~agq~v~HlHlHIip 111 (121)
.+..++.++++.+|..+ -|-+..|+ .-.|+|+||+-
T Consensus 85 ~~~~I~~~~~~~LG~~~hQ~Vva~H~------DTdh~HiHIvi 121 (746)
T PRK13878 85 TLRAIEERICAGLGYGEHQRVSAVHH------DTDNLHIHIAI 121 (746)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEEC------CCCCceeEEEE
Confidence 45567778888888743 45555553 45899999996
No 43
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=50.51 E-value=48 Score=20.64 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=16.4
Q ss_pred CeEEEEEecCCCCCcCCCChhHHH
Q psy9251 43 PFHYKLVPKYNVPNMNYLIAENKT 66 (121)
Q Consensus 43 ~gH~LViPk~Hv~~~~~L~~~~~~ 66 (121)
..|.||+|.+.-. +|++++.+
T Consensus 52 ~~~~lVlP~~P~~---~lse~~L~ 72 (77)
T TIGR03793 52 TVLYLVLPVNPDI---ELTDEQLD 72 (77)
T ss_pred CeEEEEecCCCCC---CCCHHHHH
Confidence 4688999999876 78887643
No 44
>KOG2958|consensus
Probab=48.25 E-value=68 Score=25.45 Aligned_cols=64 Identities=11% Similarity=-0.029 Sum_probs=36.9
Q ss_pred CeEEEEEecCCCCC--cCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEE--E-ecCCcCCCccceeeEEE
Q psy9251 43 PFHYKLVPKYNVPN--MNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIH--V-NNGPLAEQFYDWLYLDI 109 (121)
Q Consensus 43 ~gH~LViPk~Hv~~--~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~--~-n~g~~agq~v~HlHlHI 109 (121)
.|-+-||.-....+ +.+++..+ +..++..=+++...++-.+.|+++ | |-|..+|.|..|-|--+
T Consensus 106 ~G~c~Vicf~Pnh~ltLp~m~~~~---i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~ 174 (354)
T KOG2958|consen 106 KGVCKVICFSPNHNLTLPLMDVVE---IRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQA 174 (354)
T ss_pred cceeEEEEeCCccccccccCCHHH---HHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccce
Confidence 34445555444433 44455444 566666555666666644445543 3 44778899999988543
No 45
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=46.07 E-value=82 Score=22.70 Aligned_cols=47 Identities=9% Similarity=-0.053 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHH-HHHHHHHHcCCCCceEEEEecCCcCCCccceeeEEEecC
Q psy9251 59 YLIAENKTLYGHLLL-VAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDIFAD 112 (121)
Q Consensus 59 ~L~~~~~~~l~~l~~-~~~~~~~~~~~~~g~~~~~n~g~~agq~v~HlHlHIip~ 112 (121)
+++.++ +.+++. .++-+.+..|-.+-++.+++. .-+-+|+|+-++|.
T Consensus 94 ~~~~e~---~~~~~~~~~~~~~~r~g~~ni~~a~vH~----DE~tPH~H~~~vP~ 141 (196)
T PF01076_consen 94 DLDPEQ---QKRWFEDSLEWLQERYGNENIVSAVVHL----DETTPHMHFDVVPI 141 (196)
T ss_pred chhhHH---HHHHHHHHHHHHHHHCCchhEEEEEEEC----CCCCcceEEEEeec
Confidence 344443 344444 344444444433345555553 45689999999994
No 46
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=45.70 E-value=95 Score=21.16 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCCcCCCccceeeEEEe
Q psy9251 40 KVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 40 P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
+..++|+.++||.--.-|.. + .+..+.++++++++..+ +.+.--++ --+|+|+-+-
T Consensus 10 ~~~~yH~v~~~kyRr~vl~~---~---~~~~l~~~l~~~~~~~~----~eI~a~~v-----~pdHVHlli~ 65 (136)
T COG1943 10 YGLKYHFVWVPKYRRKVLTG---E---VLNLLRSILREVAEQKN----FEILAMEV-----MPDHVHLLIT 65 (136)
T ss_pred eCCcEEEEEeccCchHhhhH---h---HHHHHHHHHHHHHHhCC----CEEEEEEe-----cCCEEEEEEe
Confidence 45579999999998765543 2 24455556677766543 44432222 1278888776
No 47
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=43.84 E-value=65 Score=20.38 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=25.6
Q ss_pred CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCC
Q psy9251 21 NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVP 55 (121)
Q Consensus 21 ~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~ 55 (121)
...+|.|+.+.+.+..-. +.+.+|||++..
T Consensus 31 ~GiVV~ETknt~~I~t~~-----~~~~~IpK~~~v 60 (89)
T PF01868_consen 31 EGIVVDETKNTFVIVTED-----GKVKTIPKAGSV 60 (89)
T ss_dssp EEEEEEEETTEEEEEETT-----EEEEEEESTTEE
T ss_pred EEEEEEcccceEEEEecC-----CcEEEEecCCEE
Confidence 457999999999999866 678999999954
No 48
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.19 E-value=86 Score=19.55 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHcC
Q psy9251 58 NYLIAENKTLYGHLLLVAGKITKMMN 83 (121)
Q Consensus 58 ~~L~~~~~~~l~~l~~~~~~~~~~~~ 83 (121)
..|+++|...|.++...|+++.+++.
T Consensus 34 ~~Ls~~d~~~L~~L~~~A~rm~~RI~ 59 (75)
T PRK09458 34 QGLSQEEQQRLAQLTEKAERMRERIQ 59 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889998999999998888877653
No 49
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=33.05 E-value=53 Score=25.37 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=15.0
Q ss_pred CccCccEEEEcCcEEEEEe
Q psy9251 18 VSHNLTIIYEDTQCIAWEE 36 (121)
Q Consensus 18 ~~~~~~iv~e~d~~va~~d 36 (121)
...+..||||||+++|+--
T Consensus 74 ~~~~l~IlyED~~llVvnK 92 (289)
T COG0564 74 EDIPLDILYEDEDLLVVNK 92 (289)
T ss_pred cCCCccEEEecCCEEEEEC
Confidence 3445689999999999864
No 50
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=31.95 E-value=37 Score=21.44 Aligned_cols=29 Identities=3% Similarity=-0.118 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCCCCeEEEEEecCCCCCcCC
Q psy9251 30 QCIAWEEMYHKVAPFHYKLVPKYNVPNMNY 59 (121)
Q Consensus 30 ~~va~~d~~~P~~~gH~LViPk~Hv~~~~~ 59 (121)
.+.++.+-. +..+|.-++|+++.+.++..
T Consensus 7 ~i~~~rNGD-~~~~g~~~~v~~~~~~s~d~ 35 (89)
T smart00537 7 RIRFYRNGD-RFFKGVRLVVNRKRFKSFEA 35 (89)
T ss_pred EEEEEeCCC-CCCCCEEEEEChhhcCCHHH
Confidence 456777888 99999999999999887664
No 51
>smart00538 POP4 A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Probab=31.48 E-value=85 Score=20.07 Aligned_cols=36 Identities=19% Similarity=-0.000 Sum_probs=26.6
Q ss_pred CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCC
Q psy9251 21 NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLI 61 (121)
Q Consensus 21 ~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~ 61 (121)
...+|.|+.+.+.+..-. +-..+|||.+..-...++
T Consensus 30 ~GiVv~ET~nt~~I~t~~-----~~~~~IpK~~~vF~f~l~ 65 (92)
T smart00538 30 EGIVVDETRNTLKIETKE-----GRVKTVPKDGAVFEFELP 65 (92)
T ss_pred EEEEEEeeeeEEEEEeCC-----CcEEEEECCCeEEEEEEC
Confidence 457899999999998754 567899999954333343
No 52
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=29.94 E-value=65 Score=22.14 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=16.9
Q ss_pred CCCCCcCCCChhHHHHHHHHHHHHHHHHH
Q psy9251 52 YNVPNMNYLIAENKTLYGHLLLVAGKITK 80 (121)
Q Consensus 52 ~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~ 80 (121)
||+-++.+|+.+| +..++..|.++.+
T Consensus 1 r~~l~~~dls~~e---i~~ll~~A~~lk~ 26 (142)
T PF02729_consen 1 RHLLSIKDLSPEE---IEALLDLAKELKA 26 (142)
T ss_dssp SEBSSGGGS-HHH---HHHHHHHHHHHHH
T ss_pred CCcCchhhCCHHH---HHHHHHHHHHHHh
Confidence 5778899999987 4555555555443
No 53
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=29.68 E-value=42 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=11.3
Q ss_pred CccEEEEcCcEEEE
Q psy9251 21 NLTIIYEDTQCIAW 34 (121)
Q Consensus 21 ~~~iv~e~d~~va~ 34 (121)
+..++|||+.++++
T Consensus 56 ~~~i~~ed~~~lvv 69 (70)
T cd00165 56 EEDIVYEDKKLLVV 69 (70)
T ss_pred ccceeeccCCEEEe
Confidence 44899999998875
No 54
>PF01446 Rep_1: Replication protein; InterPro: IPR000989 Replication proteins (rep) are involved in plasmid replication. The Rep protein binds to the plasmid DNA and nicks it at the double strand origin (dso) of replication. The 3'-hydroxyl end created is extended by the host DNA replicase, and the 5' end is displaced during synthesis. At the end of one replication round, Rep introduces a second single stranded break at the dso and ligates the ssDNA extremities generating one double-stranded plasmid and one circular ssDNA form. Complementary strand synthesis of the circular ssDNA is usually initiated at the single-stranded origin by the host RNA polymerase [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005727 extrachromosomal circular DNA
Probab=28.87 E-value=2.5e+02 Score=21.01 Aligned_cols=66 Identities=12% Similarity=-0.006 Sum_probs=30.2
Q ss_pred CCCCeEEEEEecCCCCCcCCCChhHHHHHHHHHHHHHHHHHHcCC---CCceEEEEecCCcCCCccceeeEEEe
Q psy9251 40 KVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNL---TDGYRIHVNNGPLAEQFYDWLYLDIF 110 (121)
Q Consensus 40 P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~~l~~~~~~~~~~~~~---~~g~~~~~n~g~~agq~v~HlHlHIi 110 (121)
|....=+|-+.-+|+. ..+|. +.+..|....+++.+.-.. --||--..-........-+|-|+||+
T Consensus 19 ~~~~~~flTLT~~n~~-~~~L~----~~l~~m~~a~~rl~~~k~~~~~~~G~ir~~EvT~~~~~g~~HPH~Hvl 87 (233)
T PF01446_consen 19 PKGRFIFLTLTVKNCK-GDELR----DTLDHMNKAFRRLFKRKRFKKNVLGYIRSTEVTYNKENGSWHPHFHVL 87 (233)
T ss_pred CCCeEEEEEeCCCCCC-cchHH----HHHHHHHHHHHHHHhccchhcccceEEEEEEEecCCCCCeeccceEEE
Confidence 3333445555556654 33332 3355565556665543221 12443222111111134578888887
No 55
>KOG3671|consensus
Probab=28.64 E-value=93 Score=26.40 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=44.3
Q ss_pred CCCCCCCceeccccCccCccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHHHHHH
Q psy9251 4 SQFQDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYG 69 (121)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~~~l~ 69 (121)
++...||.|+++..-... ++||+-|.+..|.-.. ++...|+.-.=..++. |.-.+++|...+.
T Consensus 70 kD~~~rsyFlrl~di~~~-rliWdqELY~nf~y~q-~r~ffhtFegddc~aG-LnF~~E~EA~~F~ 132 (569)
T KOG3671|consen 70 KDNAQRSYFLRLVDIVNN-RLIWDQELYQNFEYRQ-PRTFFHTFEGDDCQAG-LNFASEEEAQKFR 132 (569)
T ss_pred eccccceeeeEEeeecCc-eeeehHHhhhhceecc-Cccceeeeccccceee-ecccCHHHHHHHH
Confidence 345678889986654333 3999999999999999 9988898876666543 4444566644443
No 56
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=28.54 E-value=1.2e+02 Score=18.80 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=20.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHcC
Q psy9251 58 NYLIAENKTLYGHLLLVAGKITKMMN 83 (121)
Q Consensus 58 ~~L~~~~~~~l~~l~~~~~~~~~~~~ 83 (121)
..|+++|...|.+|...++++.+++.
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~ 59 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIE 59 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888898899999988888777653
No 57
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=26.25 E-value=1.4e+02 Score=17.28 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=21.1
Q ss_pred CccEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCcCCCChhHH
Q psy9251 21 NLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENK 65 (121)
Q Consensus 21 ~~~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~~~L~~~~~ 65 (121)
|..|+-+++.-+++.--. |+-.|||.- |++.|+
T Consensus 11 p~dI~~~~~~gy~vpHgd------H~HyI~k~d------Ls~~E~ 43 (53)
T PF04270_consen 11 PADIISETGDGYVVPHGD------HFHYIPKSD------LSASEL 43 (53)
T ss_dssp GGG--EE-SSEEEEEETT------EEEEEEGGG------S-HHHH
T ss_pred HHHccccCCCeEEeeCCC------cccCCchhh------CCHHHH
Confidence 567888888877777644 999999865 566553
No 58
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=24.36 E-value=60 Score=19.95 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=16.6
Q ss_pred EeCCCCCCCeEEEEEecCCCC
Q psy9251 35 EEMYHKVAPFHYKLVPKYNVP 55 (121)
Q Consensus 35 ~d~~~P~~~gH~LViPk~Hv~ 55 (121)
+.-+ |.+.+.+.++||.|..
T Consensus 53 L~NA-P~~edg~F~Vp~~~~~ 72 (73)
T TIGR01827 53 LENA-PVSDDGYVVVERGHWL 72 (73)
T ss_pred HHcC-CcccCCEEEEecCccC
Confidence 4456 9999999999999864
No 59
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=24.26 E-value=2.6e+02 Score=19.66 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=40.6
Q ss_pred EEEcCc-EEEEEeCCCCCC----CeEEEEEecCCCCCc---CCCChhHHHHHHHHHHHHHHHHHHcCCCCceEEEEecCC
Q psy9251 25 IYEDTQ-CIAWEEMYHKVA----PFHYKLVPKYNVPNM---NYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGP 96 (121)
Q Consensus 25 v~e~d~-~va~~d~~~P~~----~gH~LViPk~Hv~~~---~~L~~~~~~~l~~l~~~~~~~~~~~~~~~g~~~~~n~g~ 96 (121)
.++++. +.+..+-+ |.. --|++|=-|.-++.= .+++++..+++.+.+. +.....+...+.|-+..|..
T Consensus 67 pf~~~~d~kIl~NDw-PY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~--~~f~~~~~~~~~v~WF~N~~- 142 (158)
T PF12239_consen 67 PFADPSDYKILRNDW-PYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQ--RTFVDRLIPEDNVLWFKNWP- 142 (158)
T ss_pred CccCCCceEEEecCC-CcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHH--HHHHhhcCCCccEEEEeCch-
Confidence 333333 44444444 544 569888777776322 3466666555555443 11222222234565555533
Q ss_pred cCCCcccee-eEEEe
Q psy9251 97 LAEQFYDWL-YLDIF 110 (121)
Q Consensus 97 ~agq~v~Hl-HlHIi 110 (121)
+-|||.=+ |+||+
T Consensus 143 -~LqSV~~v~H~HVl 156 (158)
T PF12239_consen 143 -SLQSVRAVEHIHVL 156 (158)
T ss_pred -hcCCcCcceEEEEE
Confidence 34666544 66665
No 60
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=23.28 E-value=1.5e+02 Score=21.25 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=20.7
Q ss_pred CceEEEEec---CCcCCCccceeeEEEecCC---CCCCC
Q psy9251 86 DGYRIHVNN---GPLAEQFYDWLYLDIFADK---RLGWP 118 (121)
Q Consensus 86 ~g~~~~~n~---g~~agq~v~HlHlHIip~~---~~~~~ 118 (121)
.||.+.... |..+|.+.-=+.+|++.|. -|.||
T Consensus 33 ~GYkl~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WP 71 (167)
T cd03782 33 TGYSFQVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWP 71 (167)
T ss_pred cCceeEEEEEecCCCCCCCEEEEEEEEeccCCCccccCC
Confidence 478776653 3333443334589999985 46798
No 61
>COG4997 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=1.1e+02 Score=19.65 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHcCC
Q psy9251 61 IAENKTLYGHLLLVAGKITKMMNL 84 (121)
Q Consensus 61 ~~~~~~~l~~l~~~~~~~~~~~~~ 84 (121)
+++..+.|+.++.++..++.+.|.
T Consensus 50 edk~lEeLadllEvi~~ia~a~gf 73 (95)
T COG4997 50 EDKNLEELADLLEVISRIAEARGF 73 (95)
T ss_pred hcccHHHHHHHHHHHHHHHHHhCC
Confidence 344556788888888888776653
No 62
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=20.65 E-value=1.5e+02 Score=17.09 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=24.8
Q ss_pred cEEEEcCcEEEEEeCCCCCCCeEEEEEecCCCCCc
Q psy9251 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNM 57 (121)
Q Consensus 23 ~iv~e~d~~va~~d~~~P~~~gH~LViPk~Hv~~~ 57 (121)
-.+|=+++.++|.... +......++||-+-+.++
T Consensus 32 G~LyiT~~~lcF~s~~-~~~~~~~~~ipl~~I~~i 65 (69)
T PF02893_consen 32 GRLYITNNYLCFYSNK-FGSKTCKFVIPLSDIKSI 65 (69)
T ss_dssp EEEEEESSEEEEEESS-SSS-E-EEEEEGGGEEEE
T ss_pred eEEEECCCEEEEEECC-CCCceEEEEEEhHheeEE
Confidence 4678899999999966 666656789998776544
No 63
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=20.46 E-value=58 Score=12.45 Aligned_cols=6 Identities=67% Similarity=1.802 Sum_probs=3.4
Q ss_pred CCCCCC
Q psy9251 115 LGWPPG 120 (121)
Q Consensus 115 ~~~~~~ 120 (121)
.+|.||
T Consensus 5 ~~w~PG 10 (10)
T PF00446_consen 5 HGWKPG 10 (10)
T ss_pred cccCCC
Confidence 456665
Done!