RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9251
(121 letters)
>gnl|CDD|238607 cd01276, PKCI_related, Protein Kinase C Interacting protein related
(PKCI): PKCI and related proteins belong to the
ubiquitous HIT family of hydrolases that act on
alpha-phosphates of ribonucleotides. The members of this
subgroup have a conserved HxHxHxx motif (x is a
hydrophobic residue) that is a signature for this
family. No enzymatic activity has been reported however,
for PKCI and its related members.
Length = 104
Score = 60.7 bits (148), Expect = 3e-13
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+YED + +A+ ++ + AP H ++PK ++ +++ E++ L GHLL A K+ K +
Sbjct: 15 KKVYEDDEVLAFHDINPQ-APVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDL 73
Query: 83 NL-TDGYRIHVNNGPLAEQ 100
+ DGYR+ +N G Q
Sbjct: 74 GIAEDGYRLVINCGKDGGQ 92
>gnl|CDD|221348 pfam11969, DcpS_C, Scavenger mRNA decapping enzyme C-term binding.
This family consists of several scavenger mRNA decapping
enzymes (DcpS) and is the C-terminal region. DcpS is a
scavenger pyrophosphatase that hydrolyses the residual
cap structure following 3' to 5' decay of an mRNA. The
association of DcpS with 3' to 5' exonuclease exosome
components suggests that these two activities are linked
and there is a coupled exonucleolytic decay-dependent
decapping pathway. The C-terminal domain contains a
histidine triad (HIT) sequence with three histidines
separated by hydrophobic residues. The central histidine
within the DcpS HIT motif is critical for decapping
activity and defines the HIT motif as a new mRNA
decapping domain, making DcpS the first member of the
HIT family of proteins with a defined biological
function.
Length = 113
Score = 45.3 bits (108), Expect = 3e-07
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
I+YED +A++++ K AP H ++PK ++ ++ L E+ L GH+ VA KI K
Sbjct: 15 RIVYEDDGFVAFKDIKPK-APLHLLVIPKKHIKSLRDLTKEHLPLLGHMREVAKKIAKEK 73
Query: 83 NLTDGYRIHVNNGPLAEQFYDWLYLDIFADK 113
YR + G L+L + A
Sbjct: 74 YNEG-YRDVLRLGFHYGPSVYHLHLHVIAPD 103
>gnl|CDD|182648 PRK10687, PRK10687, purine nucleoside phosphoramidase;
Provisional.
Length = 119
Score = 39.9 bits (93), Expect = 3e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMN 83
I+Y+D A+ ++ + AP H ++P +P +N + AE++ G ++ VA KI +
Sbjct: 19 IVYQDELVTAFRDISPQ-APTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEG 77
Query: 84 LT-DGYRIHVN 93
+ DGYR+ +N
Sbjct: 78 IAEDGYRLIMN 88
>gnl|CDD|216377 pfam01230, HIT, HIT domain.
Length = 97
Score = 37.7 bits (88), Expect = 2e-04
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
++YED +A+ ++ + AP H ++PK ++ ++ L E G L+ A K+ + +
Sbjct: 7 KVVYEDDLVLAFLDIDPQ-APGHVLVIPKKHITELHDLTPE---ELGDLMSEAKKVARAL 62
Query: 83 NLT--DGYRIHVNNGPLAEQ 100
DGYRI +NNG A Q
Sbjct: 63 GKAKADGYRIVINNGAAAGQ 82
>gnl|CDD|238608 cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding
protein) subgroup: Members of this CD belong to the
superfamily of histidine triad hydrolases that act on
alpha-phosphate of ribonucleotides. This subgroup
includes members from all three forms of cellular life.
Although the biochemical function has not been
characterised for many of the members of this subgroup,
the proteins from Yeast have been shown to be involved
in secretion, peroxisome formation and gene expression.
Length = 103
Score = 33.0 bits (76), Expect = 0.009
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKIT---K 80
+YED +A+ ++ + H ++PK + N+ + L+L A K+ K
Sbjct: 16 KVYEDDHVLAFLDIN-PASKGHTLVIPKKHYENL-LDLDPE--ELAELILAAKKVARALK 71
Query: 81 MMNLTDGYRIHVNNGPLAEQ 100
DG I NNG A Q
Sbjct: 72 KALKADGLNILQNNGRAAGQ 91
>gnl|CDD|223611 COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other
HIT family hydrolases [Nucleotide transport and
metabolism / Carbohydrate transport and metabolism /
General function prediction only].
Length = 138
Score = 30.8 bits (70), Expect = 0.090
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM- 82
+YED +A+ ++Y AP H ++PK +V ++ L E L L+A KI K +
Sbjct: 17 KVYEDEHVLAFLDIY-PAAPGHTLVIPKRHVSDLEDLDPE---ELAELFLLAQKIAKALK 72
Query: 83 --NLTDGYRIHVNNGPLAEQ 100
DGY I +NNG A Q
Sbjct: 73 EAFGADGYNIGINNGKAAGQ 92
>gnl|CDD|238609 cd01278, aprataxin_related, aprataxin related: Aprataxin, a HINT
family hydrolase is mutated in ataxia oculomotor
apraxia syndrome. All the members of this subgroup have
the conserved HxHxHxx (where x is a hydrophobic
residue) signature motif. Members of this subgroup are
predominantly eukaryotic in origin.
Length = 104
Score = 30.4 bits (69), Expect = 0.095
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKI 78
+YED + + ++++Y K A HY ++PK ++ ++ L E+ L H+ V +
Sbjct: 18 QVYEDDRVVVFKDIYPK-ARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREK 71
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 26.0 bits (57), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 PLAEQFYDWLYLDIFADKRLGWPPGK 121
P EQF + + + A+KR PPGK
Sbjct: 160 PTVEQFVEAVKETVLANKRWVPPPGK 185
>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620). Family of
uncharacterized proteins.
Length = 243
Score = 25.6 bits (56), Expect = 8.0
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 6 FQDRSSILPHHEVSHNLTIIYEDTQCIAWE 35
F RS +L E SH I + WE
Sbjct: 147 FSQRSGLLVRLEDSHLTRIQTPGADAVYWE 176
>gnl|CDD|238606 cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins,
related to the HIT family carry a motif HxHxH/Qxx (x, is
a hydrophobic amino acid), On the basis of sequence,
substrate specificity, structure, evolution and
mechanism, HIT proteins are classified into three
branches: the Hint branch, which consists of adenosine
5' -monophosphoramide hydrolases, the Fhit branch, that
consists of diadenosine polyphosphate hydrolases, and
the GalT branch consisting of specific nucloside
monophosphate transferases. Fhit plays a very important
role in the development of tumours. Infact, Fhit
deletions are among the earliest and most frequent
genetic alterations in the development of tumours.
Length = 126
Score = 24.9 bits (55), Expect = 8.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 43 PFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQ 100
P H +VP +VP + L E L+ +A K K++ DG+ I +N+G
Sbjct: 34 PGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFNIGINDGKAGGG 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.448
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,223,303
Number of extensions: 525588
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 18
Length of query: 121
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 37
Effective length of database: 7,211,866
Effective search space: 266839042
Effective search space used: 266839042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)