RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9251
(121 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 86.8 bits (216), Expect = 2e-23
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
II+ED Q +A+ ++ AP H+ ++PK ++ ++ +++L GHL++V K +
Sbjct: 30 KIIFEDDQALAFHDI-SPQAPTHFLVIPKKHISQISAAEDADESLLGHLMIVGKKCAADL 88
Query: 83 NLTDGYRIHVNNGPLAEQFYDWLYLDIFADKRLGWPPG 120
L GYR+ VN G Q ++L + +++ WPPG
Sbjct: 89 GLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG 126
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 75.2 bits (186), Expect = 5e-19
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
T +YED + +A+ ++ + VAP+H +VPK + ++ + + + H+ +V KI K
Sbjct: 19 TKVYEDDRVLAFNDL-NPVAPYHILVVPKKHYDSLIDIPDKEMDIVSHIHVVINKIAKEK 77
Query: 83 NLTD-GYRIHVNNGPLAEQFYDWLYLDIFADKRLG-WPPGK 121
G+R+ N G Q L+ I A K+L + G+
Sbjct: 78 GFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYEAGQ 118
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 74.9 bits (185), Expect = 6e-19
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
TI+YED + A++++ + +AP H ++PK ++ ++N + EN+ G +L I K
Sbjct: 22 TIVYEDDEIFAFKDI-NPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKE 80
Query: 83 NLTDGYRIHVNNGPLAEQFYDWLYLDIFADKRLGWPP 119
+GYR+ N G A Q ++ I K+L W
Sbjct: 81 CP-EGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 68.7 bits (169), Expect = 2e-16
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
I+Y+D A+ ++ AP H ++P +P +N + AE++ G ++ VA KI +
Sbjct: 18 DIVYQDDLVTAFRDI-SPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQE 76
Query: 83 NLT-DGYRIHVNNGPLAEQFYDWLYLDIFADKRLG 116
+ DGYR+ +N Q +++ + + LG
Sbjct: 77 GIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 67.7 bits (166), Expect = 7e-16
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
TI YED + IA +++ + AP H ++PK ++ N+ + N + + A K+ + +
Sbjct: 50 TIYYEDERVIAIKDI-NPAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDL 108
Query: 83 NLTD-GYRIHVNNGPLAEQFYDWLYLDIFADKRLG 116
+ + GYR+ N G A Q L+ + +G
Sbjct: 109 GIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDMG 143
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 64.7 bits (158), Expect = 1e-14
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
IYED + ++ H ++PK + ++ E + + +
Sbjct: 20 IRIYEDENFLGILDI-RPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARES 78
Query: 83 NLT-DGYRIHVNNGPLAEQFYDWLYLDI---FADKRLGWPPGK 121
L DG I +N+G A Q ++L + +L + G
Sbjct: 79 GLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAKGM 121
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 60.4 bits (147), Expect = 5e-13
Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+ E ++ +A+ ++ + ++ H ++PK + ++ L E+ G LL A +
Sbjct: 26 AKVAETSKALAFMDI-NPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGP 84
Query: 83 NLTDGYRIHVNNGPLAEQFYDWLYLDIF------ADKRLGWPPGK 121
+ + Y + NNG LA Q ++ I ++GW K
Sbjct: 85 DGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDTVK 129
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 53.5 bits (129), Expect = 2e-10
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+YED +A+ ++ +V H ++PK ++ N+ E Y H + + +
Sbjct: 20 AKVYEDEHVLAFLDI-SQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDE 78
Query: 83 NLTDGYRIHVNNGPLAEQ 100
G NNG A Q
Sbjct: 79 FEPIGLNTLNNNGEKAGQ 96
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 53.1 bits (128), Expect = 3e-10
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+YED + A + Y V+ H ++PK + N + ++ + K
Sbjct: 14 YFVYEDEKFAAILDKY-PVSLGHTLVIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDA 72
Query: 83 NLTDGYRIHVNNGPLAEQ 100
DG R+ N G A Q
Sbjct: 73 VKADGLRLLTNIGRSAGQ 90
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 51.9 bits (125), Expect = 7e-10
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+YED +A+ + + H +VP+ + N + + + ++ V+ I K
Sbjct: 20 RFVYEDDDVVAFLTI-EPMTQGHTLVVPREEIDNWQDV---DSAAFNRVMGVSQLIGKA- 74
Query: 83 NLTDGYRIHVNNGPLAEQ 100
+ +R + +A
Sbjct: 75 -VCKAFRTERSGLIIAGL 91
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 51.2 bits (123), Expect = 2e-09
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+YED IA+ ++ AP H ++PK N+ E + K K
Sbjct: 43 VRVYEDDDVIAFMDI-MPQAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKA 101
Query: 83 NLTDGYRIHVNNGPLAEQ 100
DG + N ++Q
Sbjct: 102 FQADGITVMQFNEAASQQ 119
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 50.0 bits (120), Expect = 4e-09
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
IIYE + A + Y ++ H+ ++PK + P ++ E +L + +
Sbjct: 19 NIIYETDRLFALIDRY-PLSKGHFLVIPKAHHPYLHNYKPE---ELSGVLDTIRHLVQKF 74
Query: 83 NLTDGYRIHVNNG 95
+ Y I NNG
Sbjct: 75 GF-ERYNILQNNG 86
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 50.1 bits (120), Expect = 6e-09
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKT-LYGHLLLVAGKITKM 81
+ +YED +A+ ++ + H ++PK +V N + L+ + +A + K
Sbjct: 51 SKVYEDEDVLAFLDI-SQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKA 109
Query: 82 MNLTDGYRIHVNNGPLAEQ 100
DG I NN A Q
Sbjct: 110 TK-ADGLNIINNNEETAGQ 127
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 49.7 bits (119), Expect = 7e-09
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
+ +YED +A+ ++ +V H ++PK + ++ L E + ++ K
Sbjct: 24 SKVYEDEHVLAFLDI-SQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAE 82
Query: 83 NLTDGYRIHVNNGPLAEQ 100
G+ + NNG A Q
Sbjct: 83 FNPVGFNLLNNNGEKAGQ 100
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 43.9 bits (103), Expect = 1e-06
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 23 TIIYEDTQCIAWEEMYHKVAPFHYKLVPK---YNVPNMNYLIAENKTLYGHLLLVAGKIT 79
+IY D + +M+ K + H L+ + + ++ ++++L L+
Sbjct: 22 NVIYYDDDVVLVRDMFPK-SKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEKLVSYVQGDL 80
Query: 80 KMMNLT------------DGYRIHVNNGPLAEQFYDWLYLDIFAD 112
+ + ++ G A + L+L I
Sbjct: 81 SGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTL 125
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 35.7 bits (82), Expect = 0.001
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMN 83
++ A +Y P H +VP V + L A ++ K ++
Sbjct: 86 VVARGKLVYAVLNLY-PYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQKAIRVIKNVS 144
Query: 84 LTDGYRIHVNNGPLAEQ 100
G+ + +N G A
Sbjct: 145 RPHGFNVGLNLGTSAGG 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.016
Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 31/121 (25%)
Query: 4 SQFQDRSSILPH-HEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVP---NMNY 59
++ S + E + ++ IY + + E H +V YN+P + +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDD 463
Query: 60 LIA--ENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQF--YDWLYLDI-FADKR 114
LI ++ Y H+ G+ H+ N E+ + ++LD F +++
Sbjct: 464 LIPPYLDQYFYSHI---------------GH--HLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 115 L 115
+
Sbjct: 507 I 507
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein,
putative human tumor suppressor, advanced photon source,
APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB:
1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Length = 147
Score = 31.1 bits (71), Expect = 0.043
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Query: 24 IIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMN 83
+ + A V P H + P V + L + G + +
Sbjct: 15 VFLKTELSFALVNRK-PVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHF 73
Query: 84 LTDGYRIHVNNGPLAEQ 100
+ +GP A Q
Sbjct: 74 HGTSLTFSMQDGPEAGQ 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.088
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 52 YNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQF 101
YNV N Y+ A G L + +T ++N +I + L +
Sbjct: 1846 YNVENQQYVAA------GDLRALD-TVTNVLNFIKLQKI--DIIELQKSL 1886
Score = 26.2 bits (57), Expect = 3.2
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 10/77 (12%)
Query: 42 APFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQF 101
+PFH L+ + L+ N + + +I + + DG + V +G ++E+
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDI----QIP-VYDTFDGSDLRVLSGSISERI 479
Query: 102 YDWLYLDIFADKRLGWP 118
D + + W
Sbjct: 480 VDCI-----IRLPVKWE 491
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 27.2 bits (59), Expect = 1.7
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 68 YGHLLLVAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDIFADKRLGWPPG 120
Y H+L + ++T+ + N E +D + D+++GW
Sbjct: 190 YKHVLTLTDQVTRFNEEVKKQSV-SRNRDAPEGGFDAIMQATVCDEKIGWRND 241
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase,
galactose metabolism; HET: GDU; 1.80A {Escherichia coli}
SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Length = 348
Score = 26.9 bits (58), Expect = 2.0
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 15 HHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLI-AENKTLYGHLLL 73
E++ + E +A + PF L+PK +V + L A+ L L
Sbjct: 203 QRELADGSRTVVETEHWLAVVPYWA-AWPFETLLLPKAHVLRITDLTDAQRSDLALALKK 261
Query: 74 VAGKITKMMNLTDGYRIHVNNGPLAEQFYDWLYLDI 109
+ + + + Y + + P + L
Sbjct: 262 LTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHA 297
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 26.7 bits (58), Expect = 2.4
Identities = 16/82 (19%), Positives = 20/82 (24%), Gaps = 11/82 (13%)
Query: 33 AWEEMYHKVAPF---HYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMMNLTDGYR 89
WE APF H L P +N + L + T G
Sbjct: 23 QWEPDSDPDAPFNRSHVPLEPGRVADRVNANADTDAHLVSLSA--------LNRHTSGVP 74
Query: 90 IHVNNGPLAEQFYDWLYLDIFA 111
F W Y D+
Sbjct: 75 SQGAPVFYENTFSYWHYTDLMV 96
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc,
AMP, structural genomics, protein structure initiative,
CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP:
d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A*
Length = 351
Score = 26.0 bits (56), Expect = 3.6
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)
Query: 5 QFQDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAEN 64
+ + + E +I E + ++ PF ++PK + + ++L
Sbjct: 208 DYFEETGKCCLCEAKSKHFVIDESSHFVSVAPFAA-TYPFEIWIIPKDHSSHFHHLDDVK 266
Query: 65 KTLYGHLLLVAGKITKMMNLTDGYRIHVNNGPL----AEQFYDWLYLDIF 110
G LL + + Y ++ PL ++ Y +L I
Sbjct: 267 AVDLGGLLKLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIV 316
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A
{Enterococcus faecalis} PDB: 2r3e_A
Length = 310
Score = 25.2 bits (56), Expect = 6.1
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 13/46 (28%)
Query: 44 FHYKLVPKYNVPNMNYLIAE-------------NKTLYGHLLLVAG 76
H+ M YL + K+ +G ++L+ G
Sbjct: 7 HHHHHHENLYFQGMRYLSKDILEEVITQRPSDSYKSNFGRVVLIGG 52
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
sandwich, unknown function; 2.50A {Streptococcus
mutans}
Length = 311
Score = 25.2 bits (56), Expect = 6.2
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 64 NKTLYGHLLLVAG 76
+K +G +LL+ G
Sbjct: 54 HKGTFGRVLLIGG 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.448
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,966,077
Number of extensions: 103202
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 36
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)