RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9251
         (121 letters)



>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 66.7 bits (162), Expect = 4e-16
 Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 1/98 (1%)

Query: 23  TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
            II+ED +C+A+ ++    AP H+ ++PK ++  ++    ++++L GHL++V  K    +
Sbjct: 15  KIIFEDDRCLAFHDIS-PQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADL 73

Query: 83  NLTDGYRIHVNNGPLAEQFYDWLYLDIFADKRLGWPPG 120
            L  GYR+ VN G    Q    ++L +   +++ WPPG
Sbjct: 74  GLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWPPG 111


>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 113

 Score = 40.2 bits (93), Expect = 6e-06
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 23  TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
           TI YED + IA +++    AP H  ++PK ++ N+  +   N  +   +   A K+ + +
Sbjct: 17  TIYYEDERVIAIKDIN-PAAPVHVLIIPKEHIANVKEINESNAQILIDIHKAANKVAEDL 75

Query: 83  NLT-DGYRIHVNNGPLAEQFYDWLYLDIFADKRLG 116
            +   GYR+  N G  A Q    L+  +     +G
Sbjct: 76  GIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDMG 110


>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
           domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 160

 Score = 34.4 bits (78), Expect = 0.001
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 23  TIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLVAGKITKMM 82
            I Y       +  +   V   H  + PK  VP +  L          +      + +  
Sbjct: 30  HIFYSTPHSFVFVNLK-PVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKH 88

Query: 83  NLTDGYRIHVNNGPLAEQFYDWLYLDI 109
           +      I V +G  A Q    +++ I
Sbjct: 89  HNVTSTTICVQDGKDAGQTVPHVHIHI 115


>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
           uridylyltransferase {Escherichia coli [TaxId: 562]}
          Length = 171

 Score = 34.3 bits (78), Expect = 0.001
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 4/99 (4%)

Query: 15  HHEVSHNLTIIYEDTQCIAWEEMYHKVAPFHYKLVPKYNVPNMNYLIAENKTLYGHLLLV 74
             E++     + E    +A    +    PF   L+PK +V  +  L    ++     L  
Sbjct: 26  QRELADGSRTVVETEHWLAVVPYWA-AWPFETLLLPKAHVLRITDLTDAQRSDLALALKK 84

Query: 75  AGK-ITKMMNLTDGYRIHVNNGPLAEQFYD--WLYLDIF 110
                  +   +  Y +  +  P   +      L+   +
Sbjct: 85  LTSRYDNLFQCSFPYSMGWHGAPFNGEENQHWQLHAHFY 123


>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 97

 Score = 25.1 bits (55), Expect = 1.5
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 1  MARSQFQDRSSILPHHEVSHNLTIIYEDTQCIAWEEMYHKVA 42
            RS FQ  ++  P  E +  L  +  + Q + W  + H+VA
Sbjct: 53 SVRSCFQFANN-KPEIEAALFLDWMRLEPQSMVWLPVLHRVA 93


>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
           protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 24.3 bits (53), Expect = 1.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 80  KMMNLTDGYRIHVNNGPLAEQFYDWL 105
            ++NL DG R+   + P  +   +WL
Sbjct: 8   PVINLEDGTRLVGEDAPKNKDLVEWL 33


>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
           protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 58

 Score = 24.0 bits (52), Expect = 1.9
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 80  KMMNLTDGYRIHVNNGPLAEQFYDWL 105
            ++N  DG  +   + P   +   WL
Sbjct: 10  PVINKVDGTLLVGEDAPRRAELEMWL 35


>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish
          (Raphanus sativus) [TaxId: 3726]}
          Length = 51

 Score = 23.3 bits (50), Expect = 3.4
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 28 DTQCIAWEEMYH 39
            QCI  E+  H
Sbjct: 22 KNQCINLEKARH 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 487,670
Number of extensions: 20402
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 16
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)