BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9252
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1X|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C84a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A++ D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 124
>pdb|1RZY|A Chain A, Crystal Structure Of Rabbit Hint Complexed With N-
Ethylsulfamoyladenosine
pdb|3QGZ|A Chain A, Re-Investigated High Resolution Crystal Structure Of
Histidine Triad Nucleotide-Binding Protein 1 (Hint1)
From Rabbit Complexed With Adenosine
Length = 126
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A++ D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 124
>pdb|1KPA|A Chain A, Pkci-1-Zinc
pdb|1KPA|B Chain B, Pkci-1-Zinc
pdb|1KPC|A Chain A, Pkci-1-Apo+zinc
pdb|1KPC|B Chain B, Pkci-1-Apo+zinc
pdb|1KPC|C Chain C, Pkci-1-Apo+zinc
pdb|1KPC|D Chain D, Pkci-1-Apo+zinc
pdb|1KPE|A Chain A, Pkci-Transition State Analog
pdb|1KPF|A Chain A, Pkci-Substrate Analog
pdb|1AV5|A Chain A, Pkci-Substrate Analog
pdb|1AV5|B Chain B, Pkci-Substrate Analog
pdb|1KPE|B Chain B, Pkci-Transition State Analog
Length = 126
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A+++D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL + +GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWP 124
>pdb|1KPB|A Chain A, Pkci-1-Apo
pdb|1KPB|B Chain B, Pkci-1-Apo
Length = 125
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A+++D LL
Sbjct: 15 DTIFGKIIRKEIP-AKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 73
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL + +GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 74 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWP 123
>pdb|3TW2|A Chain A, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
pdb|3TW2|B Chain B, High Resolution Structure Of Human Histidine Triad
Nucleotide-binding Protein 1 (hhint1)/amp Complex In A
Monoclinic Space Group
Length = 126
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A+++D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL + +GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWP 124
>pdb|4EQE|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQE|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Lys-Ams
pdb|4EQG|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQG|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Ala-Ams
pdb|4EQH|A Chain A, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
pdb|4EQH|B Chain B, Crystal Structure Of Histidine Triad Nucleotide-Binding
Protein 1 (Hint1) From Human Complexed With Trp-Ams
Length = 128
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A+++D LL
Sbjct: 18 DTIFGKIIRKEIP-AKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLL 76
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL + +GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 77 GHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWP 126
>pdb|3RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With Gmp
pdb|4RHN|A Chain A, Histidine Triad Nucleotide-binding Protein (hint) From
Rabbit Complexed With Adenosine
pdb|5RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Complexed With 8-Br-Amp
pdb|6RHN|A Chain A, Histidine Triad Nucleotide-Binding Protein (Hint) From
Rabbit Without Nucleotide
Length = 115
Score = 89.7 bits (221), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A++ D LL
Sbjct: 5 DTIFGKIIRKEIP-AKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 63
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 64 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 113
>pdb|3O1Z|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) Double Cysteine
Mutant From Rabbit
Length = 126
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D A+ +++ AP + +IPKK+++ ++ A++ D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 124
>pdb|3O1C|A Chain A, High Resolution Crystal Structure Of Histidine Triad
Nucleotide- Binding Protein 1 (Hint1) C38a Mutant From
Rabbit Complexed With Adenosine
Length = 126
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ KI+R + K+I+ D A+ +++ AP + +IPKK+++ ++ A++ D LL
Sbjct: 16 DTIFGKIIRKEIP-AKIIFEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLL 74
Query: 231 GHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
GH+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 75 GHLMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 124
>pdb|3OJ7|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Sulfate
pdb|3OMF|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Amp
pdb|3OXK|A Chain A, Crystal Structure Of A Histidine Triad Family Protein From
Entamoeba Histolytica, Bound To Gmp
Length = 117
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 187 VIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM 246
++Y D +A++++ +AP++I +IPK+++ SL E EE+ +G + + +
Sbjct: 23 IVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIG-KKEC 81
Query: 247 REGYRVVINNGHAGNHNLTHFNILLIGGRQMRYPK 281
EGYRVV N G + H + ++GG+++ + K
Sbjct: 82 PEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWDK 116
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI++ + + Y D A +++ APV++ IIPK+++ ++ E E +A +L
Sbjct: 38 VFCKIIKRELP-STIYYEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILID 96
Query: 233 MFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGG 274
+ K A DL + E GYR++ N G A + H + L+GG
Sbjct: 97 IHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGG 139
>pdb|3N1S|A Chain A, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|B Chain B, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|E Chain E, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|F Chain F, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|I Chain I, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|J Chain J, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|M Chain M, Crystal Structure Of Wild Type Echint Gmp Complex
pdb|3N1S|N Chain N, Crystal Structure Of Wild Type Echint Gmp Complex
Length = 119
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
E ++ KI+R + ++Y D L A+R+++ AP +I IIP + ++ + E L
Sbjct: 4 ETIFSKIIRREIP-SDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62
Query: 231 GHMFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
G M + K A + E GYR+++N G + H ++ L+GGR +
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>pdb|3N1T|A Chain A, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|B Chain B, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|E Chain E, Crystal Structure Of The H101a Mutant Echint Gmp Complex
pdb|3N1T|F Chain F, Crystal Structure Of The H101a Mutant Echint Gmp Complex
Length = 119
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
E ++ KI+R + ++Y D L A+R+++ AP +I IIP + ++ + E L
Sbjct: 4 ETIFSKIIRREIP-SDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQAL 62
Query: 231 GHMFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
G M + K A + E GYR+++N G + H + L+GGR +
Sbjct: 63 GRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIAMHLLGGRPL 110
>pdb|4EGU|A Chain A, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
pdb|4EGU|B Chain B, 0.95a Resolution Structure Of A Histidine Triad Protein
From Clostridium Difficile
Length = 119
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI + KV Y D A+ +L +AP +I ++PKK+ SL + +++ ++ H
Sbjct: 7 IFCKIANGEIPSTKV-YEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEMDIVSH 65
Query: 233 MFHLCQKFA----FDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYPKY 282
+ + K A FD + G+RV+ N G G + H + ++ G+++ P Y
Sbjct: 66 IHVVINKIAKEKGFD---QTGFRVINNCGSDGGQEVKHLHYHILAGKKL--PNY 114
>pdb|3LB5|A Chain A, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|B Chain B, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|C Chain C, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
pdb|3LB5|D Chain D, Crystal Structure Of Hit-Like Protein Involved In
Cell-Cycle Regulation From Bartonella Henselae With
Unknown Ligand
Length = 161
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 163 PGRL--LYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLA 220
PG + YD+ ++ K++RN+ +V Y D A+ ++ AP + +IPKK +L
Sbjct: 19 PGSMKQAYDNNNIFAKLIRNEIPSVRV-YEDDDVIAFMDIMPQAPGHTLVIPKKGSRNLL 77
Query: 221 EAQEEDAFLLGHMFHLCQKFAFDLK---MREGYRVVINNGHAGNHNLTHFNILLI 272
+A E F + QK A +K +G V+ N A + H + +I
Sbjct: 78 DADTETLF---PVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFHII 129
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 142 DSVISHGNEEEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELT 201
++ +S GNEEE+ KR+ + +++ +LR Y+ V+YN+SL +++L
Sbjct: 367 ENALSIGNEEEY-KRV------AEMAFNYNFAGFTLLR----YQDVMYNNSLMGKFKDLL 415
Query: 202 KLAPVYINIIPKKNLTSLAEA 222
+ PV I+ K T++ +
Sbjct: 416 GVTPVMQTIVVKNVPTTIGDT 436
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 142 DSVISHGNEEEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELT 201
++ +S GNEEE+ KR+ + +++ +LR Y+ V+YN+SL +++L
Sbjct: 367 ENALSIGNEEEY-KRV------AEMAFNYNFAGFTLLR----YQDVMYNNSLMGKFKDLL 415
Query: 202 KLAPVYINIIPKKNLTSLAEA 222
+ PV I+ K T++ +
Sbjct: 416 GVTPVMQTIVVKNVPTTIGDT 436
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 142 DSVISHGNEEEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELT 201
++ +S GNEEE+ KR+ + +++ +LR Y+ V+YN+SL +++L
Sbjct: 367 ENALSIGNEEEY-KRV------AEMAFNYNFAGFTLLR----YQDVMYNNSLMGKFKDLL 415
Query: 202 KLAPVYINIIPKKNLTSLAEA 222
+ PV I+ K T++ +
Sbjct: 416 GVTPVMQTIVVKNVPTTIGDT 436
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 142 DSVISHGNEEEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELT 201
++ +S GNEEE+ KR+ + +++ +LR Y+ V+YN+SL +++L
Sbjct: 367 ENALSIGNEEEY-KRV------AEMAFNYNFAGFTLLR----YQDVMYNNSLMGKFKDLL 415
Query: 202 KLAPVYINIIPKKNLTSLAEA 222
+ PV I+ K T++ +
Sbjct: 416 GVTPVMQTIVVKNVPTTIGDT 436
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 11/81 (13%)
Query: 142 DSVISHGNEEEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELT 201
++ +S GNEEE+ KR+ + +++ +LR Y+ V+YN+SL +++L
Sbjct: 367 ENALSIGNEEEY-KRV------AEMAFNYNFAGFTLLR----YQDVMYNNSLMGKFKDLL 415
Query: 202 KLAPVYINIIPKKNLTSLAEA 222
+ PV I+ K T++ +
Sbjct: 416 GVTPVMQTIVVKNVPTTIGDT 436
>pdb|2EO4|A Chain A, Crystal Structure Of Hypothetical Histidine Triad
Nucleotide-Binding Protein St2152 From Sulfolobus
Tokodaii Strain7
Length = 149
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 210 IIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNI 269
+IPKK+ + EA E+ L + L D +G R++ N G + + H ++
Sbjct: 38 VIPKKHFENYLEADEDTLAELAKVVKLVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHV 97
Query: 270 LLIGGRQMRYPKYY 283
+I + YP +
Sbjct: 98 HIIPTWEGDYPDIF 111
>pdb|3KSV|A Chain A, Hypothetical Protein From Leishmania Major
Length = 149
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI++ KV S A+ ++ L+ ++ +IPK++ + L E EDA +G
Sbjct: 14 IFCKIIKGDIPCAKV-AETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGV 72
Query: 233 MFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLI 272
+ + Y V+ NNG + + H + +I
Sbjct: 73 LLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHII 112
>pdb|3IMI|A Chain A, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|B Chain B, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|C Chain C, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3IMI|D Chain D, 2.01 Angstrom Resolution Crystal Structure Of A Hit Family
Protein From Bacillus Anthracis Str. 'ames Ancestor'
Length = 147
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 21/146 (14%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL-- 230
++ KI+ + KV Y D A+ +++++ + +IPK ++D F L
Sbjct: 12 IFCKIIDGQILCSKV-YEDEHVLAFLDISQVTKGHTLVIPK--------VHKQDIFALTP 62
Query: 231 ---GHMFHLCQKFAFDLKMR---EGYRVVINNGHAGNHNLTHFNILLIG--GRQMRYPKY 282
H+F + K A +K G+ ++ NNG + HF++ LI G +
Sbjct: 63 EIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAV 122
Query: 283 YDLSHFNSYASE-VDHCLSTYGDDFK 307
+ SH N Y E + + ST + K
Sbjct: 123 WK-SHQNEYTXENLQNIASTIANSVK 147
>pdb|2B2A|A Chain A, Crystal Structure Of The Ten Domain Of The Telomerase
Reverse Transcriptase
pdb|2B2A|B Chain B, Crystal Structure Of The Ten Domain Of The Telomerase
Reverse Transcriptase
pdb|2B2A|C Chain C, Crystal Structure Of The Ten Domain Of The Telomerase
Reverse Transcriptase
Length = 199
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 123 VHDRRRKYK--NITQKTT--VFDDSVISHGNEEEFMKRITLKTVPGRLLYDH-----EKL 173
V + ++KY N +Q T V DDS+I GN++ ++++I T+ + Y++ + L
Sbjct: 80 VENYKQKYNQPNFSQMTIKQVIDDSIILLGNKQNYVQQIGTTTIGFYVEYENINLSRQTL 139
Query: 174 YDKILRN 180
Y RN
Sbjct: 140 YSSNFRN 146
>pdb|1Y23|A Chain A, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|B Chain B, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|C Chain C, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|D Chain D, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
pdb|1Y23|E Chain E, Crystal Structure Of A Member Of Hit Family Of Proteins
From Bacillus Subtilis
Length = 145
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 21/138 (15%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI+ KV Y D A+ +++++ + +IPK ++ ++ E +E L
Sbjct: 8 IFCKIIAGDIPSAKV-YEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDE---LAKQ 63
Query: 233 MFHLCQKFAFDLKMR---EGYRVVINNGHAGNHNLTHFNILLIGGRQMRYPKYYDLSHFN 289
FH K A ++ G + NNG ++ H+++ +I P+Y F
Sbjct: 64 YFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII-------PRYGKGDGFG 116
Query: 290 SYASEVDHCLSTYGDDFK 307
+ T+ DD+K
Sbjct: 117 A-------VWKTHADDYK 127
>pdb|3L7X|A Chain A, The Crystal Structure Of Smu.412c From Streptococcus
Mutans Ua159
Length = 173
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
L+ KI+ KV Y D A+ ++++ + +IPK+++ + E + A +
Sbjct: 39 LFCKIVAGDIPSSKV-YEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQA---AN 94
Query: 233 MFHLCQKFAFDLK---MREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYPKYYDLSHFN 289
+F K A L+ +G ++ NN + H ++ L+ P++ D F+
Sbjct: 95 LFARIPKIARALQKATKADGLNIINNNEETAGQTVFHAHVHLV-------PRFADSDEFD 147
>pdb|3C8V|A Chain A, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|B Chain B, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|C Chain C, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
pdb|3C8V|D Chain D, Crystal Structure Of Putative Acetyltransferase
(Yp_390128.1) From Desulfovibrio Desulfuricans G20 At
2.28 A Resolution
Length = 496
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 59 GERATPLDLLDGLQVLPYVLREKTVPPGHPGGDTLEEVIRN-----CKHLDFDNFRKL-G 112
G ++PL + DG V P+ + + P P G + IRN + F+ F K+ G
Sbjct: 359 GSESSPLKIGDGCVVXPHTIIDLEEPLEIPAGHLVWGYIRNKADLAAHSISFEEFAKVDG 418
Query: 113 EQKLARYVLK 122
E R +
Sbjct: 419 EVTXGRXTFR 428
>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)
Length = 464
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 262 HNLTHFNILLIGGRQMRY--PKYYDLSHFNSYASEVDHCLS-TYGDDFKLSGRMADFLGS 318
H+L+ N+ LIG R+ + + HF DH S + + + G+ + S
Sbjct: 201 HDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSXPNAESWPVVGQFS----S 256
Query: 319 YGSLKAKRAKWLSSKY 334
GSL A +KWL S++
Sbjct: 257 VGSLGADESKWLCSEF 272
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase
pdb|1QZQ|B Chain B, Human Tyrosyl Dna Phosphodiesterase
Length = 483
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 262 HNLTHFNILLIGGRQMRY--PKYYDLSHFNSYASEVDHCLS-TYGDDFKLSGRMADFLGS 318
H+L+ N+ LIG R+ + + HF DH S + + + G+ + S
Sbjct: 220 HDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFS----S 275
Query: 319 YGSLKAKRAKWLSSKY 334
GSL A +KWL S++
Sbjct: 276 VGSLGADESKWLCSEF 291
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU7|B Chain B, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase
(tdp1)- Tungstate Complex
pdb|1MU9|A Chain A, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1MU9|B Chain B, Crystal Structure Of A Human Tyrosyl-Dna Phosphodiesterase
(Tdp1)- Vanadate Complex
pdb|1NOP|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1NOP|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
(Tdp1) In Complex With Vanadate, Dna And A Human
Topoisomerase I-Derived Peptide
pdb|1RFF|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFF|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octapeptide Klnyydpr, And
Tetranucleotide Agtt.
pdb|1RFI|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RFI|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Pentapeptide Klnyk, And
Tetranucleotide Agtc
pdb|1RG1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG1|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtt
pdb|1RG2|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RG2|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agta
pdb|1RGT|A Chain A, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGT|B Chain B, Crystal Structure Of Human Tyrosyl-dna Phosphodiesterase
Complexed With Vanadate, Octopamine, And Tetranucleotide
Agtc
pdb|1RGU|A Chain A, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RGU|B Chain B, The Crystal Structure Of Human Tyrosyl-dna
Phosphodiesterase Complexed With Vanadate, Octopamine,
And Tetranucleotide Agtg
pdb|1RH0|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
pdb|1RH0|B Chain B, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase
Complexed With Vanadate, Octopamine And Trinucleotide
Gtt
Length = 485
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 262 HNLTHFNILLIGGRQMRY--PKYYDLSHFNSYASEVDHCLS-TYGDDFKLSGRMADFLGS 318
H+L+ N+ LIG R+ + + HF DH S + + + G+ + S
Sbjct: 222 HDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFS----S 277
Query: 319 YGSLKAKRAKWLSSKY 334
GSL A +KWL S++
Sbjct: 278 VGSLGADESKWLCSEF 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,379,907
Number of Sequences: 62578
Number of extensions: 439308
Number of successful extensions: 1117
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 34
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)