Query psy9252
Match_columns 346
No_of_seqs 234 out of 1324
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:43:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9252.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9252hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11720 galactose-1-phosphate 100.0 7.1E-38 1.5E-42 307.0 14.7 168 95-282 125-315 (346)
2 TIGR00209 galT_1 galactose-1-p 100.0 9.7E-38 2.1E-42 306.2 14.8 168 95-282 125-315 (347)
3 cd00608 GalT Galactose-1-phosp 100.0 4.7E-36 1E-40 291.1 14.6 163 95-275 113-295 (329)
4 PLN02643 ADP-glucose phosphory 100.0 8.4E-36 1.8E-40 291.2 15.4 157 95-274 127-302 (336)
5 KOG3275|consensus 100.0 6.7E-31 1.4E-35 222.7 11.4 113 169-282 15-127 (127)
6 PRK10687 purine nucleoside pho 100.0 5.1E-30 1.1E-34 217.4 12.3 108 170-278 3-111 (119)
7 cd01276 PKCI_related Protein K 100.0 2.9E-29 6.2E-34 203.4 12.0 103 171-274 1-104 (104)
8 COG0537 Hit Diadenosine tetrap 99.9 3E-27 6.5E-32 204.9 12.8 101 171-276 2-106 (138)
9 cd01277 HINT_subgroup HINT (hi 99.9 4E-27 8.7E-32 189.6 12.6 102 171-274 1-103 (103)
10 COG1085 GalT Galactose-1-phosp 99.9 2.7E-26 6E-31 224.4 12.3 167 95-282 114-305 (338)
11 cd01278 aprataxin_related apra 99.9 7.4E-26 1.6E-30 184.1 12.2 101 171-273 1-104 (104)
12 cd01275 FHIT FHIT (fragile his 99.9 9.6E-26 2.1E-30 190.0 12.7 102 172-274 1-103 (126)
13 PF01230 HIT: HIT domain; Int 99.9 4.3E-23 9.3E-28 166.5 10.8 95 180-276 2-97 (98)
14 cd00468 HIT_like HIT family: H 99.9 1.6E-21 3.5E-26 151.6 10.2 85 188-273 1-86 (86)
15 KOG2958|consensus 99.8 2.4E-21 5.1E-26 186.1 9.0 162 95-274 128-309 (354)
16 PF11969 DcpS_C: Scavenger mRN 99.8 7.8E-20 1.7E-24 154.0 6.3 99 172-275 2-105 (116)
17 KOG3379|consensus 99.7 2.3E-17 4.9E-22 143.9 12.6 133 185-333 17-149 (150)
18 PF02744 GalP_UDP_tr_C: Galact 99.7 3.3E-17 7.2E-22 146.5 9.2 104 170-273 13-119 (166)
19 KOG4359|consensus 99.6 8.4E-15 1.8E-19 128.5 8.4 108 170-279 31-142 (166)
20 PF04677 CwfJ_C_1: Protein sim 98.9 1.2E-08 2.5E-13 87.5 12.2 98 169-273 10-107 (121)
21 KOG0562|consensus 98.8 3.9E-09 8.4E-14 95.3 5.5 108 186-295 16-125 (184)
22 KOG2476|consensus 98.2 1.3E-05 2.9E-10 82.2 10.9 97 170-273 319-415 (528)
23 PF01087 GalP_UDP_transf: Gala 98.1 1.6E-06 3.5E-11 78.5 2.1 50 84-134 120-183 (183)
24 KOG3969|consensus 97.1 0.0025 5.5E-08 62.2 9.2 95 175-273 150-255 (310)
25 PLN03103 GDP-L-galactose-hexos 97.1 0.0016 3.5E-08 66.3 7.9 73 190-273 167-241 (403)
26 KOG2477|consensus 96.7 0.0095 2.1E-07 62.4 10.2 99 170-273 407-506 (628)
27 cd00608 GalT Galactose-1-phosp 96.4 0.013 2.9E-07 57.6 8.6 99 170-273 38-161 (329)
28 COG4360 APA2 ATP adenylyltrans 96.0 0.01 2.2E-07 57.3 5.2 71 192-273 92-162 (298)
29 COG1085 GalT Galactose-1-phosp 95.1 0.073 1.6E-06 53.5 7.8 63 208-273 97-162 (338)
30 PLN02643 ADP-glucose phosphory 95.1 0.15 3.3E-06 50.7 9.8 65 206-273 108-175 (336)
31 PRK11720 galactose-1-phosphate 94.7 0.15 3.3E-06 51.0 8.7 65 206-273 106-171 (346)
32 TIGR00209 galT_1 galactose-1-p 94.3 0.28 6E-06 49.2 9.6 65 206-273 106-171 (347)
33 KOG2720|consensus 94.2 0.051 1.1E-06 54.9 4.1 74 190-273 165-238 (431)
34 TIGR00672 cdh CDP-diacylglycer 94.0 0.22 4.8E-06 48.2 7.8 98 170-272 39-143 (250)
35 PRK05471 CDP-diacylglycerol py 93.4 0.34 7.4E-06 47.0 8.0 99 170-273 40-145 (252)
36 COG5075 Uncharacterized conser 92.3 0.2 4.3E-06 48.7 4.7 85 185-273 155-250 (305)
37 PF02611 CDH: CDP-diacylglycer 91.5 0.51 1.1E-05 45.0 6.5 85 185-273 26-116 (222)
38 COG2134 Cdh CDP-diacylglycerol 82.9 6.7 0.00014 37.7 8.2 83 185-272 55-144 (252)
39 PF01087 GalP_UDP_transf: Gala 71.1 12 0.00027 33.9 6.3 64 207-273 112-178 (183)
40 COG4468 GalT Galactose-1-phosp 58.4 29 0.00064 36.3 6.7 92 170-273 174-282 (503)
41 PF14317 YcxB: YcxB-like prote 55.4 28 0.00061 24.6 4.5 39 186-234 23-61 (62)
42 TIGR01239 galT_2 galactose-1-p 48.4 52 0.0011 35.0 6.8 100 160-273 161-277 (489)
43 PRK05270 galactose-1-phosphate 43.4 77 0.0017 33.8 7.2 100 160-273 164-280 (493)
44 PF12239 DUF3605: Protein of u 41.6 1.8E+02 0.0039 26.3 8.4 45 191-235 71-122 (158)
45 PF03432 Relaxase: Relaxase/Mo 37.4 55 0.0012 29.8 4.5 36 232-273 73-109 (242)
46 PF13035 DUF3896: Protein of u 33.4 36 0.00079 26.1 2.2 31 2-32 17-47 (61)
47 PF08338 DUF1731: Domain of un 32.0 32 0.0007 25.1 1.7 41 56-101 8-48 (48)
48 PRK13878 conjugal transfer rel 26.8 66 0.0014 36.0 3.7 63 233-303 86-153 (746)
49 PF07757 AdoMet_MTase: Predict 26.6 62 0.0013 28.1 2.8 29 313-341 5-33 (112)
50 KOG2958|consensus 24.2 3.1E+02 0.0067 28.0 7.4 55 215-272 118-175 (354)
51 PF10264 Stork_head: Winged he 20.5 55 0.0012 26.8 1.3 33 307-343 15-52 (80)
No 1
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=100.00 E-value=7.1e-38 Score=307.03 Aligned_cols=168 Identities=9% Similarity=0.042 Sum_probs=147.3
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
+-|++++.+|+|||++|+++ |+||++ |||||||+|+||+.++.+++++.+|+++
T Consensus 125 ~~i~~v~~~~~~r~~~l~~~--i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~---------- 192 (346)
T PRK11720 125 AALREVVDTWQEQTAELGKT--YPWVQVFENKGAAMGCSNPHPHGQIWANSFLPNEAEREDRLQRAYFAE---------- 192 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcEEEEEeecCcccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHH----------
Confidence 56899999999999999998 999999 9999999999999999999999888775
Q ss_pred cCCCCccCCCCCccccccccccCC-ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHH-H
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFKY-KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLC-Q 238 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~~-~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va-~ 238 (346)
.+.|+||+|+++|.+. .||||||++|+||+|++|++|||+||+||+|++++.+|+++++..|+.+++.+ +
T Consensus 193 --------~g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~ 264 (346)
T PRK11720 193 --------HGSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTS 264 (346)
T ss_pred --------cCCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHH
Confidence 3789999999999773 59999999999999999999999999999999999999999999999988833 3
Q ss_pred HHHHHhCCCCCeEEEEecCCCCC--CccceeeEEEecC-----CCCCCCCC
Q psy9252 239 KFAFDLKMREGYRVVINNGHAGN--HNLTHFNILLIGG-----RQMRYPKY 282 (346)
Q Consensus 239 kVlk~lgL~~GYnm~~N~Gp~AG--qsV~HLHLHIIPr-----dkLkw~aG 282 (346)
++-+.++.+.+|||++|++|.+| ++++|+|+||+|+ .+++|.+|
T Consensus 265 ~l~~~~~~~~pyn~~~h~~p~~~~~~~~~H~HihiiPrl~Rs~~~~k~~aG 315 (346)
T PRK11720 265 RYDNLFQCSFPYSMGWHGAPFNGEENDHWQLHAHFYPPLLRSATVRKFMVG 315 (346)
T ss_pred HHHHHhCCCCCCceeEEecccCCCCCeeEEEEEEEeCCccCccccccceee
Confidence 33344443447999999999765 5789999999997 34666666
No 2
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=100.00 E-value=9.7e-38 Score=306.17 Aligned_cols=168 Identities=8% Similarity=0.031 Sum_probs=145.9
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
+-|++++++|+|||++|+ ++|+||++ |||||||+||||+.++.+++++..|+++
T Consensus 125 ~~i~~v~~~~~~r~~~l~--~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~~~~e~~~~~~y~~~---------- 192 (347)
T TIGR00209 125 AALTEIVKTWQEQTAELG--KTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPNEVEREDRLQKEYFAE---------- 192 (347)
T ss_pred HHHHHHHHHHHHHHHHHH--hCCcEEEEEeecCcccCcCCCCCceeeeeCCCCChHHHHHHHHHHHHHHH----------
Confidence 458999999999999999 69999999 9999999999999999999999888775
Q ss_pred cCCCCccCCCCCccccccccccC-CccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHH-H
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFK-YKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLC-Q 238 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~-~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va-~ 238 (346)
.+.|+||+|+++|.+ ..+|||||++|+||+|++|++|||+|||||+|++++.+|+++++.+|+.+++.+ +
T Consensus 193 --------~g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~ 264 (347)
T TIGR00209 193 --------HKSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTS 264 (347)
T ss_pred --------cCCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHH
Confidence 478999999999875 269999999999999999999999999999999999999999999999988844 3
Q ss_pred HHHHHhCCCCCeEEEEecCCCCCC--ccceeeEEEecCC-----CCCCCCC
Q psy9252 239 KFAFDLKMREGYRVVINNGHAGNH--NLTHFNILLIGGR-----QMRYPKY 282 (346)
Q Consensus 239 kVlk~lgL~~GYnm~~N~Gp~AGq--sV~HLHLHIIPrd-----kLkw~aG 282 (346)
++-+.++.+-|||+++|++|.+|+ ..+|+|+||+|+. ++++++|
T Consensus 265 ~l~~~~~~~~pYn~~~h~~p~~~~~~~~~H~HihiiPrl~R~~~~~k~~aG 315 (347)
T TIGR00209 265 KYDNLFETSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVG 315 (347)
T ss_pred HHHHHhCCCCCcceeEEecccCCCCCcEEEEEEEEeCCcccccccccceee
Confidence 433445533489999999999875 5668999999972 3455555
No 3
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=100.00 E-value=4.7e-36 Score=291.07 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=145.6
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
+-|+.++.+|+||+++|+++++|+||++ |||||||+|+||+.++.++++++.|+++
T Consensus 113 ~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a~~~vp~~~~~e~~~~~~y~~~---------- 182 (329)
T cd00608 113 AEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWALPFLPPEVARELRNQKAYYEK---------- 182 (329)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeeeCCcCChHHHHHHHHHHHHHHH----------
Confidence 4578999999999999999999999999 9999999999999999999998888774
Q ss_pred cCCCCccCCCCCccccccccccCC-ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHH-
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFKY-KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQ- 238 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~~-~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~- 238 (346)
.+.|+||+|+++|.+. .+|||||++|+||+|++|.+|||+||+||+|+.++.+|+++++..|+.+++.+.
T Consensus 183 --------~g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~ 254 (329)
T cd00608 183 --------HGRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLA 254 (329)
T ss_pred --------cCCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHH
Confidence 3789999999998763 699999999999999999999999999999999999999999999999988444
Q ss_pred HHHHHhCCCCCeEEEEecCCCCC----CccceeeEEEecCC
Q psy9252 239 KFAFDLKMREGYRVVINNGHAGN----HNLTHFNILLIGGR 275 (346)
Q Consensus 239 kVlk~lgL~~GYnm~~N~Gp~AG----qsV~HLHLHIIPrd 275 (346)
++.+.++.+.||||++|++|.+| +.++|+|+||+|+.
T Consensus 255 ~l~~~~~~~~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~ 295 (329)
T cd00608 255 RYDNLFNCSFPYSMGWHQAPTGGKELENWYYHWHFEIPPRR 295 (329)
T ss_pred HHHHHhCCCCCeEEEEeccCCCCCcCCcceEEEEEEeCCCc
Confidence 44344554458999999999864 68899999999973
No 4
>PLN02643 ADP-glucose phosphorylase
Probab=100.00 E-value=8.4e-36 Score=291.22 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=139.7
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
+-|++++.+|.|||++|+++++|+||++ |||||||+|+||+.++.+++++..|+++
T Consensus 127 ~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~~~~y~~~---------- 196 (336)
T PLN02643 127 RHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDGSKEYFEK---------- 196 (336)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHHHHHHHHH----------
Confidence 4589999999999999999999999999 9999999999999999999998887775
Q ss_pred cCCCCccCCCCCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHH-HHHH
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH-LCQK 239 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~-va~k 239 (346)
.+.|+||+|+++|+ |||||++|+||+|++|++|||+||+||+|++++.+|+++++..|+.+++ ++++
T Consensus 197 --------~g~Clfcdii~~E~----iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~ 264 (336)
T PLN02643 197 --------TGKCSLCEVVKKDL----LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQK 264 (336)
T ss_pred --------hCCCcHHHHHhCcc----EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHH
Confidence 37899999998774 9999999999999999999999999999999999999999999999988 4444
Q ss_pred HHHHhCCCCCeEEEEecCCC--CCC--ccceeeEEEecC
Q psy9252 240 FAFDLKMREGYRVVINNGHA--GNH--NLTHFNILLIGG 274 (346)
Q Consensus 240 Vlk~lgL~~GYnm~~N~Gp~--AGq--sV~HLHLHIIPr 274 (346)
+-+.++. .||||++|+||. +++ ..+|+|+||+||
T Consensus 265 l~~~~~~-~pyN~~~~~~P~~~~~~~~~~~H~hihi~PR 302 (336)
T PLN02643 265 ISKQLND-PPYNYMIQTSPLGVEESNLPYTHWFLQIVPQ 302 (336)
T ss_pred HHHhcCC-CCceeeeecCCCccccCcccceEEEEEEecC
Confidence 4445563 499999999998 345 445777899997
No 5
>KOG3275|consensus
Probab=99.97 E-value=6.7e-31 Score=222.73 Aligned_cols=113 Identities=36% Similarity=0.708 Sum_probs=108.4
Q ss_pred CCCCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9252 169 DHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMRE 248 (346)
Q Consensus 169 ~~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~ 248 (346)
++.|+||+|+++|+| +.+||||+.++||.|.+|.+|+|+|||||+|++.+..+.+.+.+.|+++|.+++++++++|+.+
T Consensus 15 ~~~tIF~kIi~keIP-a~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~ 93 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIP-AKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLED 93 (127)
T ss_pred CCCcEeeeeecccCC-cceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccc
Confidence 478999999999999 9999999999999999999999999999999988888888888899999999999999999988
Q ss_pred CeEEEEecCCCCCCccceeeEEEecCCCCCCCCC
Q psy9252 249 GYRVVINNGHAGNHNLTHFNILLIGGRQMRYPKY 282 (346)
Q Consensus 249 GYnm~~N~Gp~AGqsV~HLHLHIIPrdkLkw~aG 282 (346)
|||+++|+|..+.|+|+|+|+||+|+.+++|++|
T Consensus 94 gYrvv~NnG~~g~QsV~HvH~HvlgGrqm~WPpg 127 (127)
T KOG3275|consen 94 GYRVVQNNGKDGHQSVYHVHLHVLGGRQMQWPPG 127 (127)
T ss_pred ceeEEEcCCcccceEEEEEEEEEeCCcccCCCCC
Confidence 9999999999999999999999999999999976
No 6
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.97 E-value=5.1e-30 Score=217.38 Aligned_cols=108 Identities=29% Similarity=0.601 Sum_probs=100.3
Q ss_pred CCCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCC-CC
Q psy9252 170 HEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM-RE 248 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL-~~ 248 (346)
..|+||+|++++.+ +.+|||||.++||+|.+|.+|||+|||||+|++++.+|+++++.++..+++.++++++..++ ++
T Consensus 3 ~~CiFC~I~~g~~p-~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~ 81 (119)
T PRK10687 3 EETIFSKIIRREIP-SDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_pred CCCchhhhhcCCCC-CCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 36999999999998 89999999999999999999999999999999999999999999999999999888876554 67
Q ss_pred CeEEEEecCCCCCCccceeeEEEecCCCCC
Q psy9252 249 GYRVVINNGHAGNHNLTHFNILLIGGRQMR 278 (346)
Q Consensus 249 GYnm~~N~Gp~AGqsV~HLHLHIIPrdkLk 278 (346)
|||+++|+|+.+||+|+|+|+|||||.++.
T Consensus 82 g~~l~~n~G~~agQ~V~HlHiHvI~g~~~~ 111 (119)
T PRK10687 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRPLG 111 (119)
T ss_pred ceEEEEeCCCcCCcccCEEEEEECCCcccC
Confidence 999999999999999999999999986644
No 7
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.96 E-value=2.9e-29 Score=203.44 Aligned_cols=103 Identities=40% Similarity=0.719 Sum_probs=97.7
Q ss_pred CCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCC-CCC
Q psy9252 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM-REG 249 (346)
Q Consensus 171 ~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL-~~G 249 (346)
+|+||+|+++|.+ .++||||++++||+|++|.+|||+||+||+|++++.+|+++++.+++++++.++++++.++. ++|
T Consensus 1 ~C~fc~i~~~e~~-~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 79 (104)
T cd01276 1 DCIFCKIIRGEIP-AKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDG 79 (104)
T ss_pred CCcceecccCCCc-cCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4999999999987 89999999999999999999999999999999999999999999999999988989888764 579
Q ss_pred eEEEEecCCCCCCccceeeEEEecC
Q psy9252 250 YRVVINNGHAGNHNLTHFNILLIGG 274 (346)
Q Consensus 250 Ynm~~N~Gp~AGqsV~HLHLHIIPr 274 (346)
||+++|+|+.+||+++|+|+|||+|
T Consensus 80 ~n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 80 YRLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEEeCCCCCCCceeEEEEEEeCC
Confidence 9999999999999999999999985
No 8
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.95 E-value=3e-27 Score=204.89 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=89.5
Q ss_pred CCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHh----CC
Q psy9252 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDL----KM 246 (346)
Q Consensus 171 ~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~l----gL 246 (346)
.|+||+|+.++.+ +.+||||++++||+|.+|++|||+|||||+|+.++.+++++++..+..+.+ ++++.+ +
T Consensus 2 ~ciFc~ii~~e~~-~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~---~ia~al~~~~~- 76 (138)
T COG0537 2 MCIFCKIIRGEIP-ANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQ---KIAKALKEAFG- 76 (138)
T ss_pred CceeeeeecCCCC-ceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHH---HHHHHHHHHhC-
Confidence 6999999999998 999999999999999999999999999999999999999988655555544 444433 4
Q ss_pred CCCeEEEEecCCCCCCccceeeEEEecCCC
Q psy9252 247 REGYRVVINNGHAGNHNLTHFNILLIGGRQ 276 (346)
Q Consensus 247 ~~GYnm~~N~Gp~AGqsV~HLHLHIIPrdk 276 (346)
++|||+++|+|..|||.|+|+|+|||||..
T Consensus 77 ~~g~ni~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 77 ADGYNIGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred CCceEEEEecCcccCcCcceEEEEEcCCcC
Confidence 789999999999999999999999999843
No 9
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.95 E-value=4e-27 Score=189.55 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=92.0
Q ss_pred CCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHH-HhCCCCC
Q psy9252 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAF-DLKMREG 249 (346)
Q Consensus 171 ~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk-~lgL~~G 249 (346)
+|+||+|++++.+ .++|||+++|+||+|.+|.+|||++|+||+|++++.+|+++++.+|+.+++.+.+.++ .++ ++|
T Consensus 1 ~C~~c~ii~~e~~-~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~-~~~ 78 (103)
T cd01277 1 DCIFCKIIAGEIP-SYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALK-ADG 78 (103)
T ss_pred CCccccccCCCCC-CCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4999999999987 6899999999999999999999999999999999999999999999888885444444 345 679
Q ss_pred eEEEEecCCCCCCccceeeEEEecC
Q psy9252 250 YRVVINNGHAGNHNLTHFNILLIGG 274 (346)
Q Consensus 250 Ynm~~N~Gp~AGqsV~HLHLHIIPr 274 (346)
||+++|+|+.+|++++|+|+||+||
T Consensus 79 ~n~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 79 LNILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred eEEEEeCCcccCcccCEEEEEEccC
Confidence 9999999999999999999999996
No 10
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=99.93 E-value=2.7e-26 Score=224.43 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=144.2
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
+-|++++.+|.||+++|++...++||.+ |||||||.|++|..+++++.+...|+.+
T Consensus 114 ~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~~P~~v~~e~~~~~~y~~~---------- 183 (338)
T COG1085 114 EEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPVLPLEVARELRSAREYYEE---------- 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeecccCChHHHHHHHHHHHHHHh----------
Confidence 3489999999999999999999999999 9999999999999999999997666553
Q ss_pred cCCCCccCCCCCccccccccccCC-ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHH
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFKY-KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQK 239 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~~-~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~k 239 (346)
.+.|.||++++.|..+ .|+|+++++|+||+|+++.+|++++|+||+|+..+.+|++++..+||.+++ .
T Consensus 184 --------~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk---~ 252 (338)
T COG1085 184 --------NGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILK---K 252 (338)
T ss_pred --------cCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHH---H
Confidence 4789999999988763 599999999999999999999999999999999999999999999999888 4
Q ss_pred HHHHh----CCCCCeEEEEecCCCC-CCccceeeEEEec---C--CCCCCCCC
Q psy9252 240 FAFDL----KMREGYRVVINNGHAG-NHNLTHFNILLIG---G--RQMRYPKY 282 (346)
Q Consensus 240 Vlk~l----gL~~GYnm~~N~Gp~A-GqsV~HLHLHIIP---r--dkLkw~aG 282 (346)
++..+ +..-+|+|++++.+.. +...+|+|+||+| | ...+|..|
T Consensus 253 ~~~~y~~~~~~~fpY~m~~h~ap~~~~~~~~~~h~~~~p~~~R~~t~~k~~~g 305 (338)
T COG1085 253 LLARYDNLFGNSFPYSMGFHQAPFNEVNEHYHLHAEIYPPLLRSATKLKFLAG 305 (338)
T ss_pred HHHHHhhccCCCCceeeeeecCCCCcccccceEEEEEcccccccccccceeee
Confidence 44444 2233799999999875 4567799999999 3 33555665
No 11
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.93 E-value=7.4e-26 Score=184.05 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=90.7
Q ss_pred CCccccccccccC-CccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHh-CC-C
Q psy9252 171 EKLYDKILRNKFK-YKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDL-KM-R 247 (346)
Q Consensus 171 ~CVFCdIi~~E~~-~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~l-gL-~ 247 (346)
.|+||+|+++|.+ ..++||+|++++||+|++|++|||+||+||+|++++.+|+++++.+++++++.+.+.+... ++ +
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4999999998874 2699999999999999999999999999999999999999999999999999887755433 34 5
Q ss_pred CCeEEEEecCCCCCCccceeeEEEec
Q psy9252 248 EGYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 248 ~GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
+|||+++|+||. |+|+|+|+|||+
T Consensus 81 ~~~n~g~h~~p~--~~v~H~H~Hvi~ 104 (104)
T cd01278 81 SEFRFGFHAPPF--TSVSHLHLHVIA 104 (104)
T ss_pred cCeEEEeCCCCC--cCeeeEEEEeeC
Confidence 799999999997 999999999985
No 12
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.93 E-value=9.6e-26 Score=190.01 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=92.2
Q ss_pred CccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHh-CCCCCe
Q psy9252 172 KLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDL-KMREGY 250 (346)
Q Consensus 172 CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~l-gL~~GY 250 (346)
|+||+|++++.+..++||||++++||+|.+|.+|||+||+||+|++++.+|+++++.+++.++..+.+.++.. + ++||
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~-~~~~ 79 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYK-PDGF 79 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCce
Confidence 9999999988743589999999999999999999999999999999999999999999988888555555543 4 6799
Q ss_pred EEEEecCCCCCCccceeeEEEecC
Q psy9252 251 RVVINNGHAGNHNLTHFNILLIGG 274 (346)
Q Consensus 251 nm~~N~Gp~AGqsV~HLHLHIIPr 274 (346)
|+++|+|+.+||+++|+|+|||||
T Consensus 80 n~~~~~g~~~gq~v~H~HiHiiPR 103 (126)
T cd01275 80 NIGINDGKAGGGIVPHVHIHIVPR 103 (126)
T ss_pred EEEEeCCcccCCCcCEEEEEEeCC
Confidence 999999999999999999999998
No 13
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.89 E-value=4.3e-23 Score=166.46 Aligned_cols=95 Identities=24% Similarity=0.438 Sum_probs=80.0
Q ss_pred cccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHH-HhCCCCCeEEEEecCC
Q psy9252 180 NKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAF-DLKMREGYRVVINNGH 258 (346)
Q Consensus 180 ~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk-~lgL~~GYnm~~N~Gp 258 (346)
+|.+ +.+|||||+++||+|.+|.+|||+||+||+|++++.+|+++++..+..+++.+.+.++ .++ ++|||+++|+|+
T Consensus 2 ~e~~-~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~-~~~~~~~~~~g~ 79 (98)
T PF01230_consen 2 GEIP-ARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFG-PDGYNVIINNGP 79 (98)
T ss_dssp TSSH-CEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEESG
T ss_pred CCCC-eeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccc-cceeeccccchh
Confidence 4566 7999999999999999999999999999999999999999888777776664333333 345 579999999999
Q ss_pred CCCCccceeeEEEecCCC
Q psy9252 259 AGNHNLTHFNILLIGGRQ 276 (346)
Q Consensus 259 ~AGqsV~HLHLHIIPrdk 276 (346)
.+||+++|+|+|||||++
T Consensus 80 ~~gq~v~HlH~HviPR~~ 97 (98)
T PF01230_consen 80 AAGQSVPHLHFHVIPRYK 97 (98)
T ss_dssp GGTSSSSS-EEEEEEEST
T ss_pred hhcCccCEEEEEEecccC
Confidence 999999999999999853
No 14
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.86 E-value=1.6e-21 Score=151.65 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=73.5
Q ss_pred EEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHH-HhCCCCCeEEEEecCCCCCCccce
Q psy9252 188 IYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAF-DLKMREGYRVVINNGHAGNHNLTH 266 (346)
Q Consensus 188 VyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk-~lgL~~GYnm~~N~Gp~AGqsV~H 266 (346)
||||++++||+|++|.+|||+|||||+|+.++.+|+++++..+..+++...+.++ ..+ .+|||+++|.|+.+||+++|
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~n~g~~~g~~v~H 79 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGN-VPSLTVFVNDGAAAGQSVPH 79 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcC-CCceEEEEcCCccCCCcCCE
Confidence 6999999999999999999999999999999999999987777776663333332 234 56999999999999999999
Q ss_pred eeEEEec
Q psy9252 267 FNILLIG 273 (346)
Q Consensus 267 LHLHIIP 273 (346)
+|+||||
T Consensus 80 ~H~hiiP 86 (86)
T cd00468 80 VHLHVLP 86 (86)
T ss_pred EEEEeCC
Confidence 9999998
No 15
>KOG2958|consensus
Probab=99.85 E-value=2.4e-21 Score=186.12 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=137.0
Q ss_pred HHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCCchhHHHhhhhcccCchHHHHHHhhhc
Q psy9252 95 EVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRITLK 160 (346)
Q Consensus 95 ~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip~k~~~~l~~~~sh~~~e~~~~~~~~~ 160 (346)
.-|+.+|+-|..+|.+|++.+.++||-| ||||.+|-|+||+....++++-+.|+.+
T Consensus 128 ~~i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~wal~~lP~~vs~e~~s~kkyfe~---------- 197 (354)
T KOG2958|consen 128 VEIRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQAWALPVLPSTVSQELDSQKKYFEE---------- 197 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCcccceeecccCCcHHHHHhhhHHHHHHH----------
Confidence 4589999999999999999999999988 9999999999999999999998777774
Q ss_pred cCCCCccCCCCCccccccccccC-CccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHH-HHH
Q psy9252 161 TVPGRLLYDHEKLYDKILRNKFK-YKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH-LCQ 238 (346)
Q Consensus 161 ~~~~~~~~~~~CVFCdIi~~E~~-~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~-va~ 238 (346)
.+.|++-+.++.|.. ..|||.|+++|++++|+++.||+++|||||+|++++.+|++-+..+|+.+++ ...
T Consensus 198 --------hgk~ll~dy~~~E~l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~ 269 (354)
T KOG2958|consen 198 --------HGKCLLMDYVKQEALEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLI 269 (354)
T ss_pred --------cCCchHHHHHHHHHhhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHH
Confidence 478999666665532 2599999999999999999999999999999999999999999999999998 345
Q ss_pred HHHHHhCCCCCeEEEEecCCCCC--Cccc--eeeEEEecC
Q psy9252 239 KFAFDLKMREGYRVVINNGHAGN--HNLT--HFNILLIGG 274 (346)
Q Consensus 239 kVlk~lgL~~GYnm~~N~Gp~AG--qsV~--HLHLHIIPr 274 (346)
++.+.+...-+|+||++..|.++ +... .+|+|++|.
T Consensus 270 KydnlfetsfPYsmg~h~aPl~~t~~e~~n~W~h~hFypp 309 (354)
T KOG2958|consen 270 KYDNLFETSFPYSMGIHGAPLGSTEQENYNHWLHMHFYPP 309 (354)
T ss_pred HHHHhhccCCccccccccCCcccccccccchhhhhhcccc
Confidence 55444442238999999999743 3333 469999993
No 16
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=99.79 E-value=7.8e-20 Score=153.98 Aligned_cols=99 Identities=20% Similarity=0.349 Sum_probs=83.0
Q ss_pred CccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEecc-CCCCcccCCHHHHHHHHHHHHHHHHHHHHhC---C-
Q psy9252 172 KLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKK-NLTSLAEAQEEDAFLLGHMFHLCQKFAFDLK---M- 246 (346)
Q Consensus 172 CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKR-HV~sL~dLt~eE~~~La~Ll~va~kVlk~lg---L- 246 (346)
|+||.|..++.+ .+|||+|+.|++|.|.+|.++.|+|||||+ |+.|+.+|+.++...|.+|...+.++++..+ .
T Consensus 2 cif~~i~~~~~~-~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 2 CIFCIIIRGEEP-ERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHTTSSSG-GGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred ccceEeEcCCCC-CcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999998887 899999999999999999999999999999 9999999999999999999999999998654 2
Q ss_pred CCCeEEEEecCCCCCCccceeeEEEecCC
Q psy9252 247 REGYRVVINNGHAGNHNLTHFNILLIGGR 275 (346)
Q Consensus 247 ~~GYnm~~N~Gp~AGqsV~HLHLHIIPrd 275 (346)
...+++|++..| +++|||+|+++.+
T Consensus 81 ~~~~~~gfH~~P----S~~HLHlHvi~~~ 105 (116)
T PF11969_consen 81 SDDIRLGFHYPP----SVYHLHLHVISPD 105 (116)
T ss_dssp GGGEEEEEESS-----SSSS-EEEEEETT
T ss_pred hhhhcccccCCC----CcceEEEEEccCC
Confidence 346788888776 9999999999953
No 17
>KOG3379|consensus
Probab=99.74 E-value=2.3e-17 Score=143.88 Aligned_cols=133 Identities=13% Similarity=0.177 Sum_probs=98.0
Q ss_pred ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCcc
Q psy9252 185 KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNL 264 (346)
Q Consensus 185 ~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp~AGqsV 264 (346)
..|+|.+++++||+|..|.-|||+||+|+|-++.|.||+.+|..+|..-.+.+.++++..--+...++.+..|+.|||+|
T Consensus 17 ~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AGQTV 96 (150)
T KOG3379|consen 17 DHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAGQTV 96 (150)
T ss_pred ceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccCccc
Confidence 57999999999999999999999999999999999999999876666666666666665422457999999999999999
Q ss_pred ceeeEEEecCCCCCCCCCCCcchhhhhhhhhhhcccccCchhhhhhhhhhhhhhhhhhhHHHHHHHHhh
Q psy9252 265 THFNILLIGGRQMRYPKYYDLSHFNSYASEVDHCLSTYGDDFKLSGRMADFLGSYGSLKAKRAKWLSSK 333 (346)
Q Consensus 265 ~HLHLHIIPrdkLkw~aGsdtnf~~s~a~~i~~~l~~yg~~~kl~~~~~~~~~~~~~lk~~~a~~l~~~ 333 (346)
+|+|+||+||..-.+. .+...|..... .+. .+..|-+ ..-..++++|.||+.-
T Consensus 97 pHvHvHIlPR~~gDf~--~Nd~IY~~L~~--------~~~--e~~~r~~----Rs~eEM~eEA~~lr~~ 149 (150)
T KOG3379|consen 97 PHVHVHILPRKAGDFG--DNDLIYDELDK--------HEK--ELEDRKP----RSLEEMAEEAQRLREY 149 (150)
T ss_pred ceeEEEEccccccccc--cchHHHHHHHh--------ccc--ccccCCc----chHHHHHHHHHHHHhh
Confidence 9999999998544432 12233443332 111 1111111 1334577899999864
No 18
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=99.71 E-value=3.3e-17 Score=146.48 Aligned_cols=104 Identities=15% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCccccccccccCC-ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHH-HHHHHHHHhCCC
Q psy9252 170 HEKLYDKILRNKFKY-KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH-LCQKFAFDLKMR 247 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~-~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~-va~kVlk~lgL~ 247 (346)
|+|+||++++.|... .|||++|++|++|+|++++||+++||+|++|++++.+|++.|...|+.+++ ++++.-+.++.+
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d~lf~~~ 92 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYDNLFETS 92 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhcccCCCC
Confidence 789999999887653 599999999999999999999999999999999999999999999999888 334433334434
Q ss_pred CCeEEEEecCCCCCCccc-eeeEEEec
Q psy9252 248 EGYRVVINNGHAGNHNLT-HFNILLIG 273 (346)
Q Consensus 248 ~GYnm~~N~Gp~AGqsV~-HLHLHIIP 273 (346)
.+|+|++++.|..+..-. ++|+|+-|
T Consensus 93 ~pY~m~ihqaP~~~~~~~~~fH~H~e~ 119 (166)
T PF02744_consen 93 FPYNMGIHQAPVNGEDPEHWFHPHFEP 119 (166)
T ss_dssp --EEEEEE---SSSS--TT--EEEEE-
T ss_pred CCCchhhhcCCCCcccchhhhhccccc
Confidence 589999999998765443 36666665
No 19
>KOG4359|consensus
Probab=99.56 E-value=8.4e-15 Score=128.50 Aligned_cols=108 Identities=10% Similarity=0.137 Sum_probs=91.1
Q ss_pred CCCccccccccccCC-ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCC--
Q psy9252 170 HEKLYDKILRNKFKY-KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM-- 246 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~-~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL-- 246 (346)
..|.||+|+....+. .-...||+.+++|-|++|.+..|.||+||+|+.++.+|+.++..++..|+.+++.++.+...
T Consensus 31 ~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~td 110 (166)
T KOG4359|consen 31 STCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNFTD 110 (166)
T ss_pred CceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhccCC
Confidence 589999998754432 36779999999999999999999999999999999999999999999899999888875532
Q ss_pred CCCeEEEEecCCCCCCccceeeEEEec-CCCCCC
Q psy9252 247 REGYRVVINNGHAGNHNLTHFNILLIG-GRQMRY 279 (346)
Q Consensus 247 ~~GYnm~~N~Gp~AGqsV~HLHLHIIP-rdkLkw 279 (346)
++-.+||++..|. -+|.|||+|+|- .+.|++
T Consensus 111 ~~~~r~GFHLPPf--~SV~HLHlH~I~P~~DMgf 142 (166)
T KOG4359|consen 111 FTNVRMGFHLPPF--CSVSHLHLHVIAPVDDMGF 142 (166)
T ss_pred chheeEeccCCCc--ceeeeeeEeeecchHHhch
Confidence 4568899999996 789999999994 334443
No 20
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=98.95 E-value=1.2e-08 Score=87.51 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=78.4
Q ss_pred CCCCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9252 169 DHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMRE 248 (346)
Q Consensus 169 ~~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~ 248 (346)
.+.|.|| +.+...+.-.||.-++.++.-+|.-|..+||++|+|-.|++|+..++++.|+++....+.++++.+..|.
T Consensus 10 ~~~C~fC-l~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~~-- 86 (121)
T PF04677_consen 10 PDNCWFC-LSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQGK-- 86 (121)
T ss_pred CCCCCCc-cCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 3689999 4444444248999999999999999999999999999999999999999999999988877777766652
Q ss_pred CeEEEEecCCCCCCccceeeEEEec
Q psy9252 249 GYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 249 GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
+. +.+-.. .....|+|+++||
T Consensus 87 ~v-vf~E~~---~~~~~H~~iq~vP 107 (121)
T PF04677_consen 87 DV-VFFERV---RKRNPHTHIQCVP 107 (121)
T ss_pred CE-EEEEEe---CCCCcEEEEEEEE
Confidence 33 222222 3466799999999
No 21
>KOG0562|consensus
Probab=98.84 E-value=3.9e-09 Score=95.32 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=77.9
Q ss_pred cEEEEC-CeEEEEecCCCCCCceEEEEecc-CCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCc
Q psy9252 186 KVIYND-SLCWAYRELTKLAPVYINIIPKK-NLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHN 263 (346)
Q Consensus 186 rVVyEd-E~fvAf~p~~P~sPGHvLVIPKR-HV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp~AGqs 263 (346)
+|+.+. |.++++-|.||.+..|+||+|++ -+++|.....+....+..+-.++..+...++- ......++.|..|+++
T Consensus 16 ~V~~es~d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~-~~~~~~f~vG~HavPS 94 (184)
T KOG0562|consen 16 NVYIESPDDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTN-EALCNYFRVGFHAVPS 94 (184)
T ss_pred eeeccCcccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcc-hhhhhheeeeeccCcc
Confidence 566666 79999999999999999999964 57778877777777777776666666665542 1123344555566679
Q ss_pred cceeeEEEecCCCCCCCCCCCcchhhhhhhhh
Q psy9252 264 LTHFNILLIGGRQMRYPKYYDLSHFNSYASEV 295 (346)
Q Consensus 264 V~HLHLHIIPrdkLkw~aGsdtnf~~s~a~~i 295 (346)
+.++|+|||+.|..+ +.-+++.||++|.+++
T Consensus 95 M~~LHLHVISkDf~S-~sLKNKKHwnSFnT~f 125 (184)
T KOG0562|consen 95 MNNLHLHVISKDFVS-PSLKNKKHWNSFNTEF 125 (184)
T ss_pred hhheeEEEeecccCC-chhccchhhcccCccc
Confidence 999999999965332 3335677888888755
No 22
>KOG2476|consensus
Probab=98.16 E-value=1.3e-05 Score=82.23 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=75.3
Q ss_pred CCCccccccccccCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9252 170 HEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREG 249 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~G 249 (346)
+.|.|| ..+-+.+.-.||.-+++|++-++.-|.+.+|+||||-.|++++..|+++.+.++.+.-...+++.+..|.
T Consensus 319 g~CwFC-LSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~--- 394 (528)
T KOG2476|consen 319 GSCWFC-LSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGK--- 394 (528)
T ss_pred CceEEE-ecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 679999 4433333237999999999999999999999999999999999999999998888888877788776662
Q ss_pred eEEEEecCCCCCCccceeeEEEec
Q psy9252 250 YRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 250 Ynm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
..+++-.-. .-.-|+|+.+||
T Consensus 395 ~~vvfE~~~---~rs~Hlq~Qvip 415 (528)
T KOG2476|consen 395 DAVVFERQS---YRSVHLQLQVIP 415 (528)
T ss_pred eEEEEEeec---ccceeeEEEEEe
Confidence 223322111 123499999999
No 23
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=98.07 E-value=1.6e-06 Score=78.47 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=36.8
Q ss_pred CCCCCCCCcHHHHHHHHhhhhhHhHHHhccCcCccEeec--------------CCCccccCCCCC
Q psy9252 84 PPGHPGGDTLEEVIRNCKHLDFDNFRKLGEQKLARYVLK--------------VHDRRRKYKNIT 134 (346)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~dr~~~L~~~~~i~yV~~--------------pHGqiyaYp~Ip 134 (346)
+.++..--+.+ -++.++..|.+|+++|++++.++||++ |||||+|+|+||
T Consensus 120 h~~~~~~~~~~-~~~~i~~a~~~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a~~~vP 183 (183)
T PF01087_consen 120 HERTLADMSVK-EIKEILKAWRDRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIALPHVP 183 (183)
T ss_dssp TT--GGGS-HH-HHHHHHHHHHHHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEEESS--
T ss_pred CCCChhhCCHH-HHHHHHHHHHHHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEecCCccC
Confidence 33333444444 478999999999999999999999999 999999999998
No 24
>KOG3969|consensus
Probab=97.11 E-value=0.0025 Score=62.22 Aligned_cols=95 Identities=14% Similarity=0.253 Sum_probs=68.5
Q ss_pred ccccccccCCccEEEECCe----EEEEecC--CCC--CCceEEEEeccC-CCCcccCCHHHHHHHHHHHHHHHHHH-HHh
Q psy9252 175 DKILRNKFKYKKVIYNDSL----CWAYREL--TKL--APVYINIIPKKN-LTSLAEAQEEDAFLLGHMFHLCQKFA-FDL 244 (346)
Q Consensus 175 CdIi~~E~~~~rVVyEdE~----fvAf~p~--~P~--sPGHvLVIPKRH-V~sL~dLt~eE~~~La~Ll~va~kVl-k~l 244 (346)
-+|+....+..||||+|.. |+.+-|. .+. ..-+++.|-+|+ +.|+.||+.++.+.|-.+-..++.++ +.+
T Consensus 150 ~NiL~~~aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y 229 (310)
T KOG3969|consen 150 YNILEKKAEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRY 229 (310)
T ss_pred HHHHhccccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544443599999753 4444443 222 245778777765 89999999999999988888666554 467
Q ss_pred CC-CCCeEEEEecCCCCCCccceeeEEEec
Q psy9252 245 KM-REGYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 245 gL-~~GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
|+ ++-..|.+|--| +.+|||+||++
T Consensus 230 ~v~~dqlrmf~HYqP----SyYHlHVHi~n 255 (310)
T KOG3969|consen 230 GVDPDQLRMFFHYQP----SYYHLHVHIVN 255 (310)
T ss_pred CCCchhEEEEEEecC----ceEEEEEEEEe
Confidence 77 667889998765 78899999998
No 25
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=97.08 E-value=0.0016 Score=66.33 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=52.0
Q ss_pred ECCeEEEEecCCCCCCceEEEEecc--CCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCcccee
Q psy9252 190 NDSLCWAYRELTKLAPVYINIIPKK--NLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHF 267 (346)
Q Consensus 190 EdE~fvAf~p~~P~sPGHvLVIPKR--HV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp~AGqsV~HL 267 (346)
++....+++|.+|..+||+++||.. |.+-.. +. +++..+..++...+ ..+|+++.|. .-|.+++.|+
T Consensus 167 ~~s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i--~~-------~~l~la~~~a~~~~-~p~frvgYNS-lGA~ASvNHL 235 (403)
T PLN03103 167 SNSPNVVAINVSPIEYGHVLLVPRVLDCLPQRI--DP-------DSFLLALYMAAEAN-NPYFRVGYNS-LGAFATINHL 235 (403)
T ss_pred CCCccEEEEeCCCCccCeEEEcCCcccCCCeEe--cH-------HHHHHHHHHHHhcC-CCcEEEEecC-CccccCccee
Confidence 4667799999999999999999875 655433 22 23343444554444 2479999887 4455799999
Q ss_pred eEEEec
Q psy9252 268 NILLIG 273 (346)
Q Consensus 268 HLHIIP 273 (346)
|+|.+-
T Consensus 236 HFQa~y 241 (403)
T PLN03103 236 HFQAYY 241 (403)
T ss_pred eeeecc
Confidence 999986
No 26
>KOG2477|consensus
Probab=96.74 E-value=0.0095 Score=62.41 Aligned_cols=99 Identities=12% Similarity=-0.031 Sum_probs=73.6
Q ss_pred CCCccccccccccCCccEEEECCeEEEEecCCC-CCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy9252 170 HEKLYDKILRNKFKYKKVIYNDSLCWAYRELTK-LAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMRE 248 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P-~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~ 248 (346)
..|.+| +-...++...||.-+...++.+|-+| ...||.+|+|-.|+.+-..|+++.|+++.-..+.+..+....+.
T Consensus 407 D~C~rC-fds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~-- 483 (628)
T KOG2477|consen 407 DTCPRC-FDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNL-- 483 (628)
T ss_pred hhchhh-hcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCC--
Confidence 689999 44444553478888888888888665 57999999999999999999999999998888866666665553
Q ss_pred CeEEEEecCCCCCCccceeeEEEec
Q psy9252 249 GYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 249 GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
+... +-+.+ .-+.-+|+-+|.||
T Consensus 484 dviF-yE~a~-~l~rrpH~~IeCIP 506 (628)
T KOG2477|consen 484 DVIF-YENAP-SLQRRPHTAIECIP 506 (628)
T ss_pred CeEE-EeccC-ccccCCceeEEEee
Confidence 2222 22222 13457799999999
No 27
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=96.42 E-value=0.013 Score=57.60 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=61.8
Q ss_pred CCCccccccccccCCccEEEECCeEEEEecCCCCCC----------------------ceEEEEeccCCCCcccCCHHHH
Q psy9252 170 HEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAP----------------------VYINIIPKKNLTSLAEAQEEDA 227 (346)
Q Consensus 170 ~~CVFCdIi~~E~~~~rVVyEdE~fvAf~p~~P~sP----------------------GHvLVIPKRHV~sL~dLt~eE~ 227 (346)
..|+||.=..+.. ..+...+=.+.+|.|.||.-. ..|+|..-+|..++.+++.++.
T Consensus 38 ~~CPfCpg~~~~~--~~~~~~~w~~~v~~N~fPal~~~~~~~~~~~~~l~~~~~~~G~~eVii~sp~H~~~l~~~~~~~i 115 (329)
T cd00608 38 PDCPLCPGNERAD--TGEQNPDYDVRVFENDFPALKPDAPAPEDSDDGLFRTAPARGRCEVICFSPDHNLTLAEMSVAEI 115 (329)
T ss_pred CCCCcCCCCCCCC--CCCCCCCCeEEEECCCCccccCCCCCCcccCCcccccCCcceeEEEEEECCcccCChhhCCHHHH
Confidence 5799994322110 011111223666777777652 1788999999999999998875
Q ss_pred HHHHHHHHHHHHHHHHhC-CC-CCe-EEEEecCCCCCCccceeeEEEec
Q psy9252 228 FLLGHMFHLCQKFAFDLK-MR-EGY-RVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 228 ~~La~Ll~va~kVlk~lg-L~-~GY-nm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
.. ++...++-...+. .+ -.| .+..|.|+.+|.|+.|-|.+|+.
T Consensus 116 ~~---v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 116 RE---VVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred HH---HHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 44 4433223333332 11 134 34568899999999999999885
No 28
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.01 Score=57.27 Aligned_cols=71 Identities=11% Similarity=0.109 Sum_probs=50.6
Q ss_pred CeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCccceeeEEE
Q psy9252 192 SLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILL 271 (346)
Q Consensus 192 E~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp~AGqsV~HLHLHI 271 (346)
+....++|.||.-|.|+|||.+.--.-=..|+..| +..+.. ++..+ +| .+..|.||.||.+-.|=|+.+
T Consensus 92 ~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~D---f~ta~~----vL~~l---dg-lvFYNsGp~aGaSq~HkHLQi 160 (298)
T COG4360 92 DTHKLLLNKFPVVDEHLLIVTREFEDQESALTLAD---FTTAYA----VLCGL---DG-LVFYNSGPIAGASQDHKHLQI 160 (298)
T ss_pred hhHhhhhhcCCcccceeEEeehhhhhccccCCHHH---HHHHHH----HHhcc---cc-eEEecCCCCcCcCCCccceeE
Confidence 34566789999999999999997544344455443 333333 33222 34 456799999999999999999
Q ss_pred ec
Q psy9252 272 IG 273 (346)
Q Consensus 272 IP 273 (346)
+|
T Consensus 161 ~p 162 (298)
T COG4360 161 VP 162 (298)
T ss_pred ee
Confidence 98
No 29
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=95.14 E-value=0.073 Score=53.45 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=45.2
Q ss_pred EEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCC---CCCeEEEEecCCCCCCccceeeEEEec
Q psy9252 208 INIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM---REGYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 208 vLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL---~~GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
++|-.-.|-.++.+++.++...+-.+.+ ...+.++- ..-+.+..|-|+.+|.|..|-|.+|+.
T Consensus 97 VIvesp~H~~~l~~~~~~~~~~vv~~~~---e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a 162 (338)
T COG1085 97 VIVESPDHSKTLPELPVEEIEEVVKLWQ---ERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVA 162 (338)
T ss_pred EEEECCcccCccccCCHHHHHHHHHHHH---HHHHHHhhccCcceEEeeeccCcccCccCCCCCcceee
Confidence 5566778999999999887655444444 44433321 123566789999999999999999985
No 30
>PLN02643 ADP-glucose phosphorylase
Probab=95.06 E-value=0.15 Score=50.75 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=45.0
Q ss_pred ceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCC--CeE-EEEecCCCCCCccceeeEEEec
Q psy9252 206 VYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMRE--GYR-VVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 206 GHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~--GYn-m~~N~Gp~AGqsV~HLHLHIIP 273 (346)
..|+|..-+|..++.+++.++.. .++.+-++-...++-.. .|. +.-|-|+.+|.++.|-|.+|+.
T Consensus 108 ~eVii~sp~H~~~l~~~~~~~i~---~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a 175 (336)
T PLN02643 108 HDVVIETPVHSVQLSDLPARHIG---EVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIA 175 (336)
T ss_pred EEEEEeCCccCCChHHCCHHHHH---HHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEe
Confidence 35778888999999999988754 44443323333332111 243 4568899999999999999986
No 31
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=94.67 E-value=0.15 Score=51.02 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=45.7
Q ss_pred ceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEecCCCCCCccceeeEEEec
Q psy9252 206 VYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRV-VINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 206 GHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm-~~N~Gp~AGqsV~HLHLHIIP 273 (346)
..|+|..-+|..+|.+++.++...+-.+.+ +-...++-.-.|.. .-|-|+.+|.++.|-|.+|+.
T Consensus 106 ~eViv~sp~H~~~l~~~~~~~i~~v~~~~~---~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 106 SRVICFSPDHSKTLPELSVAALREVVDTWQ---EQTAELGKTYPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEEEECCCcCCChhHCCHHHHHHHHHHHH---HHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 468889999999999999887544433333 33333320113444 558899999999999999985
No 32
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=94.31 E-value=0.28 Score=49.19 Aligned_cols=65 Identities=11% Similarity=0.008 Sum_probs=45.5
Q ss_pred ceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEE-EEecCCCCCCccceeeEEEec
Q psy9252 206 VYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRV-VINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 206 GHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm-~~N~Gp~AGqsV~HLHLHIIP 273 (346)
..|+|-.-+|-.++.+|+.+++..+-.+.+ +-...++-.-.|.. .=|-|..+|.++.|-|-+|+.
T Consensus 106 ~eVii~sp~H~~~l~~m~~~~i~~v~~~~~---~r~~~l~~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (347)
T TIGR00209 106 SRVICFSPDHSKTLPELSVAALTEIVKTWQ---EQTAELGKTYPWVQIFENKGAAMGCSNPHPHGQIWA 171 (347)
T ss_pred EEEEEeCCCccCChhHCCHHHHHHHHHHHH---HHHHHHHhCCcEEEEEeecCcccCcCCCCCceeeee
Confidence 468888889999999999987644444333 33333320113444 447799999999999999985
No 33
>KOG2720|consensus
Probab=94.17 E-value=0.051 Score=54.87 Aligned_cols=74 Identities=11% Similarity=0.049 Sum_probs=44.5
Q ss_pred ECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCccceeeE
Q psy9252 190 NDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNI 269 (346)
Q Consensus 190 EdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp~AGqsV~HLHL 269 (346)
++.. ++.+|.-|...||+||||+----..--++-. .+..|..+..... .+-|+|+.|.- -|-++|.|||+
T Consensus 165 e~~~-vvaIN~sPie~~H~LiiP~V~kc~pQrit~~-------al~lav~~m~~~d-d~~frlgyNSl-ga~AsVNHLHf 234 (431)
T KOG2720|consen 165 ENSP-VVAINVSPIEYGHVLIIPRVLKCLPQRITHK-------ALLLAVTMMAEAD-DPYFRLGYNSL-GAFASVNHLHF 234 (431)
T ss_pred ccCc-eEEEecCccccCcEEEecchhccCcceeeHH-------HHHHHHHHHHhcC-Cchhheecccc-hhhhhhhhhhh
Confidence 4555 7778999999999999998643322223321 2222223333222 22456666542 23579999999
Q ss_pred EEec
Q psy9252 270 LLIG 273 (346)
Q Consensus 270 HIIP 273 (346)
|.+=
T Consensus 235 ha~y 238 (431)
T KOG2720|consen 235 HAYY 238 (431)
T ss_pred hhhh
Confidence 9874
No 34
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=93.99 E-value=0.22 Score=48.20 Aligned_cols=98 Identities=10% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCCccccccccc-cCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCccc---CCHHHHHHHHHHHHHHHHHHHHhC
Q psy9252 170 HEKLYDKILRNK-FKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAE---AQEEDAFLLGHMFHLCQKFAFDLK 245 (346)
Q Consensus 170 ~~CVFCdIi~~E-~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~d---Lt~eE~~~La~Ll~va~kVlk~lg 245 (346)
..|+.-.-..+. .| +..|-.+..+++|-|. ..|.|+|+||-..++-+++ +++....-++.....=.-+.+++|
T Consensus 39 ~qCvp~~~~~~~p~P-C~~Vd~~~gyvvlKD~--~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g 115 (250)
T TIGR00672 39 EECLPNQQQNQNPSP-CAEVKPNAGYVVLKDL--NGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYG 115 (250)
T ss_pred hhcCCchhccCCCCC-cceEcCCCCeEEEeCC--CCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcC
Confidence 457776544432 23 5666777888888887 8899999999999887775 555555555555542233445565
Q ss_pred --CCC-CeEEEEecCCCCCCccceeeEEEe
Q psy9252 246 --MRE-GYRVVINNGHAGNHNLTHFNILLI 272 (346)
Q Consensus 246 --L~~-GYnm~~N~Gp~AGqsV~HLHLHII 272 (346)
+++ -+.+.+|.- .|.+-.|||+||=
T Consensus 116 ~pipd~~lsLaINS~--~gRSQnQLHIHIs 143 (250)
T TIGR00672 116 QPIPDRAVSLAINSR--TGRSQNHFHIHIS 143 (250)
T ss_pred CCCChhheeEEecCC--CCcccccceeeHh
Confidence 333 455566654 3788889999975
No 35
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=93.39 E-value=0.34 Score=46.98 Aligned_cols=99 Identities=6% Similarity=0.077 Sum_probs=63.4
Q ss_pred CCCccccccccc-cCCccEEEECCeEEEEecCCCCCCceEEEEeccCCCCccc---CCHHHHHHHHHHHHHHHHHHHHhC
Q psy9252 170 HEKLYDKILRNK-FKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAE---AQEEDAFLLGHMFHLCQKFAFDLK 245 (346)
Q Consensus 170 ~~CVFCdIi~~E-~~~~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~d---Lt~eE~~~La~Ll~va~kVlk~lg 245 (346)
..|+.-.-..+. .| +..|.....+++|- .+..|.|+|+||-..++-+++ +++....-++.....=.-+.+++|
T Consensus 40 ~qCvp~~~~~~~p~P-C~~Vd~~~gyvvlK--D~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g 116 (252)
T PRK05471 40 EQCLPNQQQNQNPAP-CAEVDPQAGYVLLK--DRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYG 116 (252)
T ss_pred hhcCCchhccCCCCC-CeeEccCCCeEEEe--cCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhC
Confidence 457776544432 23 56666777777776 567899999999999887775 454444445555543233445565
Q ss_pred --CCC-CeEEEEecCCCCCCccceeeEEEec
Q psy9252 246 --MRE-GYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 246 --L~~-GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
+++ -+.+.+|.- .|.+-.+||+||--
T Consensus 117 ~pipd~~lsLaINS~--~gRSQnQLHIHIsC 145 (252)
T PRK05471 117 KPIPDSAVSLAINSR--YGRTQDQLHIHISC 145 (252)
T ss_pred CCCChhheEEEecCC--CCccccceeeehhh
Confidence 333 455566644 47888999999763
No 36
>COG5075 Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=0.2 Score=48.70 Aligned_cols=85 Identities=8% Similarity=0.277 Sum_probs=55.5
Q ss_pred ccEEEECCeEEE----EecC--CCC--CCceEEEEecc-CCCCcccCCHHHHHHHHHHHHHH-HHHHHHhCC-CCCeEEE
Q psy9252 185 KKVIYNDSLCWA----YREL--TKL--APVYINIIPKK-NLTSLAEAQEEDAFLLGHMFHLC-QKFAFDLKM-REGYRVV 253 (346)
Q Consensus 185 ~rVVyEdE~fvA----f~p~--~P~--sPGHvLVIPKR-HV~sL~dLt~eE~~~La~Ll~va-~kVlk~lgL-~~GYnm~ 253 (346)
.||||+|+...- +-|. .+. ..-|+++|-++ -+.++.||...++..+..+-... ..+-..+++ ++-..|.
T Consensus 155 erivyed~~~~ngfiiiPD~KWd~qt~dsL~l~aIv~~~diktiRDlr~~~i~~l~rl~~kiltevp~~f~vd~n~l~mf 234 (305)
T COG5075 155 ERIVYEDESVINGFIIIPDMKWDGQTVDSLYLVAIVYRTDIKTIRDLRYYHILWLIRLNNKILTEVPYQFGVDPNELRMF 234 (305)
T ss_pred ceeEecCcccccCceeccccccCccceeeeeEEEEEecCCchhhhhCchhhhhHHHhhcccceEecchhcCcChhHeEEE
Confidence 699999987654 3332 222 24577766665 68999999998877776665411 111123444 4456777
Q ss_pred EecCCCCCCccceeeEEEec
Q psy9252 254 INNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 254 ~N~Gp~AGqsV~HLHLHIIP 273 (346)
+|--| +.+|+|+||+-
T Consensus 235 vHY~P----sYyhlHvHI~n 250 (305)
T COG5075 235 VHYQP----SYYHLHVHIVN 250 (305)
T ss_pred EEecc----ceEEEEEEEEe
Confidence 77655 78899999996
No 37
>PF02611 CDH: CDP-diacylglycerol pyrophosphatase; InterPro: IPR003763 The CDP-diacylglycerol pyrophosphatases 3.6.1.26 from EC play a role in the regulation of phospholipid metabolism by inositol, as well as regulating the cellular levels of phosphatidylinositol [].; GO: 0008715 CDP-diacylglycerol diphosphatase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2POF_A.
Probab=91.50 E-value=0.51 Score=44.96 Aligned_cols=85 Identities=7% Similarity=0.135 Sum_probs=44.0
Q ss_pred ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCccc---CCHHHHHHHHHHHHHHHHHHHHhC--CC-CCeEEEEecCC
Q psy9252 185 KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAE---AQEEDAFLLGHMFHLCQKFAFDLK--MR-EGYRVVINNGH 258 (346)
Q Consensus 185 ~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~d---Lt~eE~~~La~Ll~va~kVlk~lg--L~-~GYnm~~N~Gp 258 (346)
+..|-.+..++++-| +..|.|+|+||-..++-|++ +++....-++.....=.-+.+++| ++ +.+-+.+|...
T Consensus 26 C~~Vd~~~gyvvlKd--~~G~~qyLL~Pt~rIsGIEsP~Ll~~~~pNyf~~AW~aR~~v~~~~g~~lpd~~lsLaINS~~ 103 (222)
T PF02611_consen 26 CAQVDLQQGYVVLKD--RNGPLQYLLMPTDRISGIESPALLEPRTPNYFADAWQARGFVSQKLGKPLPDDDLSLAINSQY 103 (222)
T ss_dssp SSEEETTTTEEEEE---SSSSS-EEEEESS---STT-GGGGSTTS--HHHHHHHTTHHHHHHHTS---GGGEEEEEB-GG
T ss_pred CeEEcCCCCEEEEeC--CCCCccEEEeeccccCCccChhhcCCCCccHHHHHHHhhHHHHHhcCCCCCccceEEEecCcc
Confidence 344444556666665 67799999999999877765 555555556665542223444555 23 36677777654
Q ss_pred CCCCccceeeEEEec
Q psy9252 259 AGNHNLTHFNILLIG 273 (346)
Q Consensus 259 ~AGqsV~HLHLHIIP 273 (346)
|.+-.+||+||--
T Consensus 104 --gRsQdQLHIHisC 116 (222)
T PF02611_consen 104 --GRSQDQLHIHISC 116 (222)
T ss_dssp --G-S--S--EEEEE
T ss_pred --CccccceEeEhhh
Confidence 7788889999763
No 38
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=82.89 E-value=6.7 Score=37.67 Aligned_cols=83 Identities=7% Similarity=0.155 Sum_probs=48.3
Q ss_pred ccEEEECCeEEEEecCCCCCCceEEEEeccCCCCccc---CCHHHHHHHHHHHHHHHH-HHHHhC--CCC-CeEEEEecC
Q psy9252 185 KKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAE---AQEEDAFLLGHMFHLCQK-FAFDLK--MRE-GYRVVINNG 257 (346)
Q Consensus 185 ~rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~d---Lt~eE~~~La~Ll~va~k-Vlk~lg--L~~-GYnm~~N~G 257 (346)
+.-|-+...++++-+.+ -|...|.+|-.+++-+++ ++.....-|....+ |+. +.+++| +|+ .+.+.+|.
T Consensus 55 CaeV~~~AG~av~Kd~~--gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWq-AR~fms~kyg~~ipd~dvsLaINs- 130 (252)
T COG2134 55 CAEVKPQAGYAVLKDRN--GPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQ-ARDFMSKKYGNPIPDSDVSLAINS- 130 (252)
T ss_pred ceeecCCCceEEEeccC--CCceeEeeeeecccCCcChhhcCCCCccHHHHHHH-HHHHHHHHhCCCCCccceEEEecC-
Confidence 34444555555555543 578889999999887765 33333333333333 333 445676 343 55555554
Q ss_pred CCCCCccceeeEEEe
Q psy9252 258 HAGNHNLTHFNILLI 272 (346)
Q Consensus 258 p~AGqsV~HLHLHII 272 (346)
-.|.+-.|||+||-
T Consensus 131 -~~gRtQdqlHIHIS 144 (252)
T COG2134 131 -KNGRTQDQLHIHIS 144 (252)
T ss_pred -ccCccccceEEEEE
Confidence 34677778888865
No 39
>PF01087 GalP_UDP_transf: Galactose-1-phosphate uridyl transferase, N-terminal domain; InterPro: IPR005849 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C 1Z84_B 1ZWJ_A 2Q4L_A 2H39_B 2Q4H_A.
Probab=71.11 E-value=12 Score=33.89 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred eEEEEeccCCCCcccCCHHHHHHHHHHHHHHHHHHHHh-CCC-CCeEEEE-ecCCCCCCccceeeEEEec
Q psy9252 207 YINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDL-KMR-EGYRVVI-NNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 207 HvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~kVlk~l-gL~-~GYnm~~-N~Gp~AGqsV~HLHLHIIP 273 (346)
+|+|---+|-.++.+|+.++...+..+.. .-...+ ... -.|-++| |-|..+|.+..|-|-.|+.
T Consensus 112 EViIe~p~h~~~~~~~~~~~~~~i~~a~~---~r~~~l~~~~~~~yv~~FeN~G~~~GaSl~HpHsQi~a 178 (183)
T PF01087_consen 112 EVIIESPKHERTLADMSVKEIKEILKAWR---DRYRELSSDKYIKYVLIFENEGYEAGASLPHPHSQIIA 178 (183)
T ss_dssp EEEES-SSTT--GGGS-HHHHHHHHHHHH---HHHHHHCT-TT-SEEEEEEEESGGGT-SSSSSEEEEEE
T ss_pred EEEEeCCCCCCChhhCCHHHHHHHHHHHH---HHHHHHhccCCcceEEEEEecCCcCCCCCCCCceEEec
Confidence 67777778999999999988655555433 222222 111 1455544 7799999999999999986
No 40
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=58.37 E-value=29 Score=36.29 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=59.4
Q ss_pred CCCcccccccc-----c---cCCcc---EEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHHHHHH
Q psy9252 170 HEKLYDKILRN-----K---FKYKK---VIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQ 238 (346)
Q Consensus 170 ~~CVFCdIi~~-----E---~~~~r---VVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll~va~ 238 (346)
..|+.|.--.| . +.+-| +...++.|..=...|.+++-|.+|.--.|++ ...+. ..+.+++....
T Consensus 174 PkClLC~ENeGf~G~vNhPARqNhRIIp~~l~~e~W~fQySPY~YynEH~I~l~~eH~p--M~Is~---~tFerlL~f~d 248 (503)
T COG4468 174 PKCLLCKENEGFYGRVNHPARQNHRIIPVELNGEQWGFQYSPYVYYNEHCIILNGEHRP--MKISR---KTFERLLSFLD 248 (503)
T ss_pred cceeeeecccccccccCCcccccceeEEEEecCceeeEeeccceeecceeEEecCCccc--ceecH---HHHHHHHHHHH
Confidence 46999965443 1 11124 4578899988888999999999999999996 22332 23555554222
Q ss_pred HHHHHhCCCCCeEEEEecC-C-CCCCccceeeE----EEec
Q psy9252 239 KFAFDLKMREGYRVVINNG-H-AGNHNLTHFNI----LLIG 273 (346)
Q Consensus 239 kVlk~lgL~~GYnm~~N~G-p-~AGqsV~HLHL----HIIP 273 (346)
+ +| +|-+|.|.. | .+|.-..|=|+ |.+|
T Consensus 249 q------fP-hYfiGSNADLPIVGGSILsHDHyQgG~h~Fp 282 (503)
T COG4468 249 Q------FP-HYFIGSNADLPIVGGSILSHDHYQGGRHEFP 282 (503)
T ss_pred h------CC-cccccCCCCCCcccceecccccccccccccc
Confidence 2 23 788888765 3 34544458776 6676
No 41
>PF14317 YcxB: YcxB-like protein
Probab=55.36 E-value=28 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=24.4
Q ss_pred cEEEECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHHHHHHHH
Q psy9252 186 KVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMF 234 (346)
Q Consensus 186 rVVyEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~~La~Ll 234 (346)
.-|.++++++.+.- .+.+.++|||+-.+ +++.+.+..++
T Consensus 23 ~~v~e~~~~~~l~~----~~~~~~~iPk~~f~------~~e~~~f~~~l 61 (62)
T PF14317_consen 23 KKVVETKDYFYLYL----GKNQAFIIPKRAFS------EEEKEEFREFL 61 (62)
T ss_pred EEEEEeCCEEEEEE----CCCeEEEEEHHHCC------HhHHHHHHHHh
Confidence 34666666666632 66789999998433 44555555543
No 42
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=48.38 E-value=52 Score=35.01 Aligned_cols=100 Identities=12% Similarity=-0.027 Sum_probs=65.6
Q ss_pred ccCCCCccCCCCCccccccccc--------cCCccEE---EECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHH
Q psy9252 160 KTVPGRLLYDHEKLYDKILRNK--------FKYKKVI---YNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAF 228 (346)
Q Consensus 160 ~~~~~~~~~~~~CVFCdIi~~E--------~~~~rVV---yEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~ 228 (346)
+.++.|.+ ..|..|.--.|= +.+-||| ..++.|.-=...|+|+.-|-+|+-.+|++=-.+ +.
T Consensus 161 k~~~~s~Y--PkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~PMkI~-----~~ 233 (489)
T TIGR01239 161 KEAKQSSY--PACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEPMEIS-----KK 233 (489)
T ss_pred hhCccCCC--CccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCccCCcEec-----HH
Confidence 44556554 379999544431 1212554 678888888899999999999999999975432 23
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecC-C-CCCCccceeeE----EEec
Q psy9252 229 LLGHMFHLCQKFAFDLKMREGYRVVINNG-H-AGNHNLTHFNI----LLIG 273 (346)
Q Consensus 229 ~La~Ll~va~kVlk~lgL~~GYnm~~N~G-p-~AGqsV~HLHL----HIIP 273 (346)
.+.+|+..+.+. | .|-+|.|.. | ++|.-..|=|+ |.+|
T Consensus 234 tF~~Ll~fv~~f------P-hYFiGSNADLPIVGGSILsHdHyQgG~h~Fp 277 (489)
T TIGR01239 234 TFERLLSFLGKF------P-HYFIGSNADLPIVGGSILSHDHYQGGRHDFP 277 (489)
T ss_pred HHHHHHHHHHhC------C-ccccccCCCCCcccccccccccccCCCcccc
Confidence 466776644332 3 688888876 3 34444458776 4555
No 43
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=43.40 E-value=77 Score=33.82 Aligned_cols=100 Identities=10% Similarity=0.013 Sum_probs=66.1
Q ss_pred ccCCCCccCCCCCcccccccc---c-----cCCccEE---EECCeEEEEecCCCCCCceEEEEeccCCCCcccCCHHHHH
Q psy9252 160 KTVPGRLLYDHEKLYDKILRN---K-----FKYKKVI---YNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAF 228 (346)
Q Consensus 160 ~~~~~~~~~~~~CVFCdIi~~---E-----~~~~rVV---yEdE~fvAf~p~~P~sPGHvLVIPKRHV~sL~dLt~eE~~ 228 (346)
+.++.|.| ..|..|.--.| . +.+-||| ..++.|.-=...|+|+.-|-+|+-.+|++=-. + ..
T Consensus 164 k~~~~s~Y--P~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PMkI--~---~~ 236 (493)
T PRK05270 164 KKAKASSY--PKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPMKI--S---RK 236 (493)
T ss_pred hccccCCC--CcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEecCccCccEe--c---HH
Confidence 44455543 57999954443 1 2212554 67888888889999999999999999997443 2 23
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEecCC--CCCCccceeeE----EEec
Q psy9252 229 LLGHMFHLCQKFAFDLKMREGYRVVINNGH--AGNHNLTHFNI----LLIG 273 (346)
Q Consensus 229 ~La~Ll~va~kVlk~lgL~~GYnm~~N~Gp--~AGqsV~HLHL----HIIP 273 (346)
.+.+|+..+.+. | .|-+|.|..- .+|.-..|=|+ |.+|
T Consensus 237 tF~rLL~fv~~f------P-hYFiGSNADLPIVGGSILsHdHyQgG~h~Fp 280 (493)
T PRK05270 237 TFERLLDFVEQF------P-HYFIGSNADLPIVGGSILSHDHYQGGRHTFP 280 (493)
T ss_pred HHHHHHHHHHhC------C-ccccccCCCCCcccccccccccccCCCcccc
Confidence 467777644432 3 6888888763 35555558886 5666
No 44
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=41.60 E-value=1.8e+02 Score=26.31 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCeEEEEecCCCCC--C--ceEEEEeccCCCC---cccCCHHHHHHHHHHHH
Q psy9252 191 DSLCWAYRELTKLA--P--VYINIIPKKNLTS---LAEAQEEDAFLLGHMFH 235 (346)
Q Consensus 191 dE~fvAf~p~~P~s--P--GHvLVIPKRHV~s---L~dLt~eE~~~La~Ll~ 235 (346)
.+.+-+..|-|||+ | -|+.|=.|.-++. -.+++++.+..+...++
T Consensus 71 ~~d~kIl~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~ 122 (158)
T PF12239_consen 71 PSDYKILRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQ 122 (158)
T ss_pred CCceEEEecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHH
Confidence 44455566788886 3 4999988887743 24577776666666655
No 45
>PF03432 Relaxase: Relaxase/Mobilisation nuclease domain ; InterPro: IPR005094 Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalysing trans-esterification [].
Probab=37.36 E-value=55 Score=29.83 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCC-CCCeEEEEecCCCCCCccceeeEEEec
Q psy9252 232 HMFHLCQKFAFDLKM-REGYRVVINNGHAGNHNLTHFNILLIG 273 (346)
Q Consensus 232 ~Ll~va~kVlk~lgL-~~GYnm~~N~Gp~AGqsV~HLHLHIIP 273 (346)
.+..++..+++.++. ...|-++.|.- -.|.|+||+-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~~H~D------~~h~H~Hivi 109 (242)
T PF03432_consen 73 QAHEIAREFAEEMGPGNHQYVVVVHTD------TDHPHVHIVI 109 (242)
T ss_pred HHHHHHHHHHHHcCCCCcceEEEECCC------cCeeeeeEEE
Confidence 455566677777774 23566666543 3499999886
No 46
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=33.38 E-value=36 Score=26.14 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=26.3
Q ss_pred chhHHHHHHhccccchHHHHHHhhhcccccc
Q psy9252 2 KKQEIVERKLGLKLNAKERKELNKNLKKFEV 32 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (346)
|||.+-......+|..+||+.++-.+..+|-
T Consensus 17 kkq~lc~kls~~~ls~~er~qi~~eidnyey 47 (61)
T PF13035_consen 17 KKQQLCKKLSSMHLSEKEREQIKLEIDNYEY 47 (61)
T ss_pred HHHHHHHHHhhcccCHHHHHHHHhhhhhHHH
Confidence 6888888888999999999999988777764
No 47
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=31.99 E-value=32 Score=25.10 Aligned_cols=41 Identities=37% Similarity=0.361 Sum_probs=21.5
Q ss_pred hhhccCCCccccccccccchhhhhccCCCCCCCCCCcHHHHHHHHh
Q psy9252 56 KIFGERATPLDLLDGLQVLPYVLREKTVPPGHPGGDTLEEVIRNCK 101 (346)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (346)
-+|||++ --+++|-.|.|-.|.+....--|| ||++.++.++
T Consensus 8 l~lGe~a--~lll~~q~v~P~kL~~~GF~F~~p---~l~~AL~~ll 48 (48)
T PF08338_consen 8 LLLGEMA--ELLLASQRVSPKKLLEAGFQFRYP---TLEEALRDLL 48 (48)
T ss_dssp ------G--GGGG-EEEE--HHHHHTT---S-S---SHHHHHHH--
T ss_pred HHHHHHH--HHHhCCCeecChHHHHCCCcccCC---CHHHHHhccC
Confidence 5799988 678999999999999887766666 7888777653
No 48
>PRK13878 conjugal transfer relaxase TraI; Provisional
Probab=26.81 E-value=66 Score=36.02 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCC-CCCeEEEEecCCCCCCccceeeEEEecC----CCCCCCCCCCcchhhhhhhhhhhcccccC
Q psy9252 233 MFHLCQKFAFDLKM-REGYRVVINNGHAGNHNLTHFNILLIGG----RQMRYPKYYDLSHFNSYASEVDHCLSTYG 303 (346)
Q Consensus 233 Ll~va~kVlk~lgL-~~GYnm~~N~Gp~AGqsV~HLHLHIIPr----dkLkw~aGsdtnf~~s~a~~i~~~l~~yg 303 (346)
+..++.++++.+|+ ...|.++.|.. ..|+|+||+-. +..++. ...+.+..+...-+.+...||
T Consensus 86 ~~~I~~~~~~~LG~~~hQ~Vva~H~D------Tdh~HiHIviNrV~p~g~Ki~--d~~~~yr~L~kicreLE~eyG 153 (746)
T PRK13878 86 LRAIEERICAGLGYGEHQRVSAVHHD------TDNLHIHIAINKIHPTRHTIH--EPYYAYRTLAELCTKLERDYG 153 (746)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEECC------CCCceeEEEEeeecCCCCeec--CchHHHHHHHHHHHHHHHHhC
Confidence 44456678888887 34788887754 46999999962 111111 112233444444455566777
No 49
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=26.64 E-value=62 Score=28.14 Aligned_cols=29 Identities=31% Similarity=0.672 Sum_probs=26.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhhCCCCCCCC
Q psy9252 313 ADFLGSYGSLKAKRAKWLSSKYPKMCLPS 341 (346)
Q Consensus 313 ~~~~~~~~~lk~~~a~~l~~~~~~~~~~~ 341 (346)
..|..+|.+||.|=|++|.+.-|..+.|+
T Consensus 5 ~~yq~~Y~~LK~kYa~~lv~~W~E~TdP~ 33 (112)
T PF07757_consen 5 ERYQDTYQRLKEKYARWLVDNWPESTDPQ 33 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccCCch
Confidence 36888999999999999999999988886
No 50
>KOG2958|consensus
Probab=24.16 E-value=3.1e+02 Score=27.97 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=33.9
Q ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCCCCeEE---EEecCCCCCCccceeeEEEe
Q psy9252 215 NLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRV---VINNGHAGNHNLTHFNILLI 272 (346)
Q Consensus 215 HV~sL~dLt~eE~~~La~Ll~va~kVlk~lgL~~GYnm---~~N~Gp~AGqsV~HLHLHII 272 (346)
|--+|.+++..+ +..++..=+++...++-.+.|+. .=|.|.+.|.+..|-|-+.-
T Consensus 118 h~ltLp~m~~~~---i~~vv~aw~~~~~~l~~h~~y~yvQIFeNkGa~mGcSn~HpHgQ~w 175 (354)
T KOG2958|consen 118 HNLTLPLMDVVE---IRDVVDAWKKLYNELGQHDSYKYVQIFENKGAAMGCSNPHPHGQAW 175 (354)
T ss_pred cccccccCCHHH---HHHHHHHHHHHHHHhcccCCcceeeeeccCCcccccCCCCccccee
Confidence 434455666554 45555544455555552334544 44889999999999987654
No 51
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=20.52 E-value=55 Score=26.78 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhh-----hhhhhHHHHHHHHhhCCCCCCCCcc
Q psy9252 307 KLSGRMADFLGS-----YGSLKAKRAKWLSSKYPKMCLPSEE 343 (346)
Q Consensus 307 kl~~~~~~~~~~-----~~~lk~~~a~~l~~~~~~~~~~~~~ 343 (346)
.||.++.|+..+ -++| -+||++.||.|+.||.|
T Consensus 15 vlC~~I~dln~~~~~at~E~l----~~~L~~~yp~i~~Ps~e 52 (80)
T PF10264_consen 15 VLCWVISDLNAAGQPATQETL----REHLRKHYPGIAIPSQE 52 (80)
T ss_pred HHHHHHHHHhccCCcchHHHH----HHHHHHhCCCCCCCCHH
Confidence 456666666552 2233 36999999999999976
Done!