RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9252
(346 letters)
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 91.8 bits (229), Expect = 4e-23
Identities = 36/108 (33%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI+R + K + + D A+ +++ AP + +IPKK+++ ++ A++ D LLGH
Sbjct: 18 IFGKIIRKEIPAKII-FEDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDADESLLGH 76
Query: 233 MFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
+ + +K A DL +++GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 77 LMIVGKKCAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWP 124
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 86.4 bits (215), Expect = 4e-21
Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 168 YDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDA 227
+ ++ KI + KV Y D A+ +L +AP +I ++PKK+ SL + +++
Sbjct: 2 ERMDCIFCKIANGEIPSTKV-YEDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKEM 60
Query: 228 FLLGHMFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
++ H+ + K A + + G+RV+ N G G + H + ++ G+++
Sbjct: 61 DIVSHIHVVINKIAKEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKL 111
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 85.6 bits (213), Expect = 7e-21
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 9/100 (9%)
Query: 186 KVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLK 245
++Y D +A++++ +AP++I +IPK+++ SL E EE+ +G + +
Sbjct: 22 TIVYEDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEENEAFIGKVLYKVSLIGKKEC 81
Query: 246 MREGYRVVINNG-HAG---NHNLTHFNILLIGGRQMRYPK 281
EGYRVV N G AG H HF+IL GG+++ + K
Sbjct: 82 P-EGYRVVNNIGEDAGQTVKH--IHFHIL--GGKKLAWDK 116
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein,
GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB:
3n1t_A*
Length = 119
Score = 84.9 bits (211), Expect = 1e-20
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI+R + V Y D L A+R+++ AP +I IIP + ++ + E LG
Sbjct: 6 IFSKIIRREIPSDIV-YQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGR 64
Query: 233 MFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
M + K A + E GYR+++N G + H ++ L+GGR +
Sbjct: 65 MITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHMHLLGGRPL 110
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast
collaboratory for structural GEN secsg; 2.30A
{Clostridium thermocellum} SCOP: d.13.1.1
Length = 147
Score = 85.1 bits (211), Expect = 2e-20
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 168 YDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDA 227
++ KI++ + Y D A +++ APV++ IIPK+++ ++ E E +A
Sbjct: 33 TLENCVFCKIIKRELPSTIY-YEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNA 91
Query: 228 FLLGHMFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
+L + K A DL + E GYR++ N G A + H + L+GG M
Sbjct: 92 QILIDIHKAANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 142
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 70.8 bits (174), Expect = 3e-15
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 168 YDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDA 227
++ KI++ KV S A+ ++ L+ ++ +IPK++ + L E EDA
Sbjct: 9 MAANCIFCKIIKGDIPCAKV-AETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDA 67
Query: 228 FLLGHMFHLCQKFAFDLKMREGYRVVINNGHAG----NHNLTHFNIL----LIGGRQMRY 279
+G + + Y V+ NNG H HF+I+ G ++ +
Sbjct: 68 ADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPH--VHFHIIPKTDEKTGLKIGW 125
Query: 280 PKY-YDLSHFNSYASEVDHCLS 300
A ++
Sbjct: 126 DTVKVASDELAEDAKRYSEAIA 147
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, hydrola structural genomics; HET: AMP;
1.90A {Mycobacterium smegmatis str}
Length = 149
Score = 70.8 bits (174), Expect = 4e-15
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 5/110 (4%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
I+ ++ Y D ++ + +IPK + L + E + +
Sbjct: 11 AIVSGDAPAIRI-YEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQ 69
Query: 236 LCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGR---QMRYPK 281
+ A + + G + IN+G A + H ++ ++ R ++ + K
Sbjct: 70 RIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPRRNGDKLSFAK 119
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 65.1 bits (159), Expect = 5e-13
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 145 ISHGNEEEFMKRITLKTVPGRLL--YDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTK 202
++H + PG + YD+ ++ K++RN+ +V Y D A+ ++
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMKQAYDNNNIFAKLIRNEIPSVRV-YEDDDVIAFMDIMP 59
Query: 203 LAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNH 262
AP + +IPKK +L +A E F + K +G V+ N A
Sbjct: 60 QAPGHTLVIPKKGSRNLLDADTETLFPVIKAVQKIAKAVKKAFQADGITVMQFNEAASQQ 119
Query: 263 NLTHFNILLIGGRQM 277
+ H + +I +
Sbjct: 120 TVYHLHFHIIPRMEG 134
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 63.5 bits (155), Expect = 2e-12
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
KI+ KV Y D A+ +++++ + +IPK ++ ++ E +E A H
Sbjct: 11 KIIAGDIPSAKV-YEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVP 69
Query: 236 LCQKFAFDLKMREGYRVVINNGHAG----NHNLTHFNIL----LIGGRQMRYPKY---YD 284
+ D G + NNG H H +I+ G + + Y
Sbjct: 70 KIARAIRDEFEPIGLNTLNNNGEKAGQSVFH--YHMHIIPRYGKGDGFGAVWKTHADDYK 127
Query: 285 LSHFNSYASEVDHCLST 301
+ +S + L++
Sbjct: 128 PEDLQNISSSIAKRLAS 144
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT
family, structural genomics, NPPSFA; 1.80A {Sulfolobus
tokodaii}
Length = 149
Score = 61.2 bits (149), Expect = 9e-12
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
I+ + + V Y D A + ++ + +IPKK+ + EA E+ L +
Sbjct: 5 SIINRELEGYFV-YEDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELAKVVK 63
Query: 236 LCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
L D +G R++ N G + + H ++ +I + YP
Sbjct: 64 LVSLGIKDAVKADGLRLLTNIGRSAGQVIFHLHVHIIPTWEGDYP 108
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium
paratuberculosis, STR genomics; 1.90A {Mycobacterium
avium subsp}
Length = 138
Score = 60.0 bits (146), Expect = 2e-11
Identities = 11/110 (10%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 168 YDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDA 227
++ KI+ + + V Y D A+ + + + ++P++ + + +
Sbjct: 3 GSMASIFTKIINRELPGRFV-YEDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSA-- 59
Query: 228 FLLGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQM 277
+ + Q + + +R + + H ++ + R +
Sbjct: 60 -AFNRVMGVSQLIG--KAVCKAFRTERSGLIIAGLEVPHLHVHVFPTRSL 106
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 58.1 bits (141), Expect = 1e-10
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
KI+ + KV Y D A+ +++++ + +IPK + + E H+F
Sbjct: 15 KIIDGQILCSKV-YEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEI---ASHIFS 70
Query: 236 LCQKFAFDLKMR---EGYRVVINNGHAG----NHNLTHFNIL----LIGGRQMRYPKY 282
+ K A +K G+ ++ NNG H H +++ G + +
Sbjct: 71 VVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFH--FHLHLIPRYGENDGFGAVWKSH 126
>3r6f_A HIT family protein; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Length = 135
Score = 54.6 bits (132), Expect = 1e-09
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 186 KVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLK 245
+IY +A + L+ + +IPK + L + E+ L + +
Sbjct: 19 NIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEE---LSGVLDTIRHLVQKFG 75
Query: 246 MREGYRVVINNG 257
E Y ++ NNG
Sbjct: 76 F-ERYNILQNNG 86
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle
regulation; 1.70A {Streptococcus mutans}
Length = 173
Score = 53.6 bits (129), Expect = 7e-09
Identities = 12/75 (16%), Positives = 29/75 (38%)
Query: 186 KVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLK 245
+Y D A+ ++++ + +IPK+++ + E + A L +
Sbjct: 51 SKVYEDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLFARIPKIARALQKAT 110
Query: 246 MREGYRVVINNGHAG 260
+G ++ NN
Sbjct: 111 KADGLNIINNNEETA 125
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding
protein, DNA deadenylas hydrolase; 1.80A
{Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*
Length = 204
Score = 47.0 bits (111), Expect = 2e-06
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 21/135 (15%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKK---NLTSLAEAQEEDAFLLGH 232
+ + YK VIY D R++ + +++ ++ + E + L+
Sbjct: 12 VYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPLEIMMKHRSLVEK 71
Query: 233 MFHLCQKFAFDLKM------------REGYRVVINNGHAGNHNLTHFNILLIGGR----Q 276
+ Q L E I G ++ + ++ ++
Sbjct: 72 LVSYVQGDLSGLIFDEARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPS 131
Query: 277 MRYPKYYDLSHFNSY 291
++ +Y F S
Sbjct: 132 LKNSAHY--ISFTSP 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 66/408 (16%), Positives = 121/408 (29%), Gaps = 113/408 (27%)
Query: 7 VERKLGLKLNAKERKELNKNLKKFE----VLEH-------ETLAPHFYEDEREDIFKNEE 55
V R + +L + L + VL +A + K +
Sbjct: 131 VSRL-------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC-KMDF 182
Query: 56 KIF----GERATPLDLLDGLQVLPYVLREKTVPPGHPGGDTLEEVIRNCKHLDFDNFRKL 111
KIF +P +L+ LQ L Y + P D + + R+L
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQID----PNWTSRSDHSSNIKLRIHSIQ-AELRRL 237
Query: 112 GEQKLARY-----VLK-VHDRR--RKYKN------ITQKTTVFDD---SVISHGNEEEFM 154
+ K Y VL V + + + T+ V D + +H + +
Sbjct: 238 LKSK--PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 155 KRIT-----------------------LKTVP------GRLLYDHEKLYDKILR-NKFKY 184
+T L T P + D +D N K
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 185 KKVIYN--DSLCWA-YREL-TKLA--PVYINIIPKKNLTSL-AEAQEEDAFLLGHMFHLC 237
+I + + L A YR++ +L+ P + IP L+ + + + D + + +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMV---VVNKL 411
Query: 238 QKFAFDLKMREGYRVVINN------GHAGNHNLTHFNILLIGGRQMRYPKYYDLSHF--- 288
K++ K + + I + N H +I+ PK +D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPP 467
Query: 289 ---NSYASEVDHCLSTYGDDFKLSGRMADFLGSYGSLKAKRAKWLSSK 333
+ S + H L + RM F + ++L K
Sbjct: 468 YLDQYFYSHIGHHLKN----IEHPERMTLFRMVFLDF-----RFLEQK 506
Score = 38.7 bits (89), Expect = 0.003
Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 32/157 (20%)
Query: 11 LGLKLNAKERKELNKNL----KKFEVLEHETLAP-------------HFYEDEREDIFKN 53
L LK+ + L++++ + + + L P H E +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 54 EEKIFGERATPLDLLDGLQVLPYVLREKTVPPGHPGG--DTLEEVIRNCKHL-DFDNFRK 110
+F LD + L +R + G +TL+++ ++ D D +
Sbjct: 493 FRMVF------LD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 111 LGEQKLARYVLKV--HDRRRKYKNITQKTTVFDDSVI 145
+ ++ K+ + KY ++ + + +D I
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 33.7 bits (76), Expect = 0.12
Identities = 54/374 (14%), Positives = 104/374 (27%), Gaps = 122/374 (32%)
Query: 30 FEVLEHE----TLAPHFYEDERED------------IFKNEE--KIFGERATPLDLLDGL 71
FE EH+ + F + ++ I EE I + D + G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----DAVSGT 64
Query: 72 QVLPYVLREKTVPPGHPGGDTLEEVIRNCKHLDFD----NFRKLGEQKLARYVLKVHDRR 127
L + L K + +++ + +++ + Q + + R
Sbjct: 65 LRLFWTLLSK-------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 128 RKYKNITQKTTVFDDSVISHGN---EEEFMK-RITLKTV-PGRLLYDH------------ 170
R Y D+ V + N + ++K R L + P + +
Sbjct: 118 RLYN---------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 171 EKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLL 230
+ ++ K +K I+ W +L + +L
Sbjct: 169 DVCLSYKVQCKMDFK--IF-----WL---------------------NLKNCNSPET-VL 199
Query: 231 GHMFHLCQKFAFDLKMR-EGYRVVINNGHAGNHNLTHF-------NILLIGGRQMRYPKY 282
+ L + + R + + H+ L N LL+ ++ K
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAK- 257
Query: 283 YDLSHFNSYASEVDHC--LSTYGD----DFKLSG------RMADFLGSYGSLKAKR--AK 328
+ FN C L T DF LS + + + K K
Sbjct: 258 -AWNAFNL------SCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 329 WLSSKYPKMCLPSE 342
+L + LP E
Sbjct: 310 YLDCRPQD--LPRE 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.16
Identities = 41/250 (16%), Positives = 71/250 (28%), Gaps = 80/250 (32%)
Query: 144 VISHGN------------------EEEFMKRITLKTVPGRLLYDHE-----KLYDKILRN 180
+SHG+ +E+F K L D E +L K L
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNK--ILPEPTEGFAADDEPTTPAELVGKFL-- 65
Query: 181 KFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLG---HMF--H 235
+ V S + ++ L L E E+ +L G H
Sbjct: 66 GYVSSLV--EPSKVGQFDQVLNLC--------------LTEF--ENCYLEGNDIHALAAK 107
Query: 236 LCQKFAFDLKMREG----Y---RVVINNGHAGNHN--LT------HFNILLI-GGRQMRY 279
L Q+ L + Y R++ N L + ++ I GG Q
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-QGNT 166
Query: 280 PKYYD-LSH-FNSYASEVDHCLSTYGDDFK-LSGRMADFLGSYG---SLKAKRAKWLSSK 333
Y++ L + +Y V + + L D + ++ WL +
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE----WLENP 222
Query: 334 YPKMCLPSEE 343
P ++
Sbjct: 223 SNT---PDKD 229
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase;
HET: PG4; 1.89A {Mycobacterium tuberculosis}
Length = 218
Score = 30.7 bits (69), Expect = 0.52
Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
+I + + V+ L +A L P ++ ++P + ++ L + + ++ L
Sbjct: 75 EIPQLSDEEGLVVARGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAELMAFTQ 134
Query: 236 LCQKFAFDLKMREGYRVVINNGH-AGNHNLTHFNILLI 272
+ ++ G+ V +N G AG H ++ ++
Sbjct: 135 KAIRVIKNVSRPHGFNVGLNLGTSAGGSLAEHLHVHVV 172
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.5
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 18/39 (46%)
Query: 2 KKQEIVERKLGLKLNAKERKELNKNLKKFEVLEHETLAP 40
+KQ + K+L +LK + ++ AP
Sbjct: 18 EKQAL--------------KKLQASLKLY---ADDS-AP 38
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized
conserved protein, structural genomics, UNKN function,
NPPSFA; 1.80A {Thermus thermophilus}
Length = 67
Score = 26.0 bits (57), Expect = 5.2
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 82 TVP--PGHPGGDTLEEVIRNCK 101
VP H + EE++R +
Sbjct: 20 HVPELHAHTQAQSFEELLRRLQ 41
>1jmo_A HC-II, heparin cofactor II, HLS2, serin; serpin, thrombin,
protease, inhibition, inhibitor, blood CLO; HET: TYS NDG
NAG; 2.20A {Homo sapiens} SCOP: e.1.1.1 PDB: 1jmj_A*
Length = 480
Score = 28.1 bits (63), Expect = 5.6
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 34 EHETLAPHFYEDEREDIFKNEEKIFGERATPLDLLDGLQVLPYV--LREKTVPPGHPGGD 91
E+ E E +D + + EKIF E +D++D L V P + + G
Sbjct: 43 ENTVTNDWIPEGEEDDDYLDLEKIFSEDDDYIDIVDSLSVSPTDSDVSAGNILQLFHGKS 102
Query: 92 TLEEVIRNCKHLDFDNFRKLGEQK 115
++ + F+ +R L +Q
Sbjct: 103 RIQRLNILNAKFAFNLYRVLKDQV 126
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 27.6 bits (61), Expect = 6.8
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 93 LEEVIRNCKHLDFDNFRKLGEQKL-----------ARYVL-KVHDRRRKYKN 132
++ N L + + + L +Y + +++ R Y+N
Sbjct: 337 HLALLDNRTELSIAEYEAMFAETLDTDIDQTLEDELKYSISAINNTVRSYRN 388
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 27.3 bits (61), Expect = 7.8
Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 57 IFGERATPLDLLDGLQVLPYVLREKTVPPGHPG-GDTLEEVIRNCKHLDFDNFRKLGEQK 115
+ G + L + P L + + G + + + DF +Q+
Sbjct: 399 LLGSQGAEELALASQRTAPAALENLSHTFRYTDIGAAIAHELGYEQLADF-----AQQQE 453
Query: 116 LARYVLKVHDRRRKYKNITQKTTVFDDSVISHGNEEEFMKRI 157
+ + + K I +K V ++S + + EE + I
Sbjct: 454 IEAERKQERAELKAAKKIAKKAPVLEESPTNLEDPEEVEQSI 495
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.411
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,531,445
Number of extensions: 343574
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 38
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)