RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9252
(346 letters)
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 111
Score = 64.0 bits (155), Expect = 2e-13
Identities = 38/108 (35%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI+R + K+I+ D C A+ +++ AP + +IPKK+++ ++ A+++D LLGH
Sbjct: 3 IFGKIIRKEIP-AKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGH 61
Query: 233 MFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRYP 280
+ + +K A DL + +GYR+V+N G G ++ H ++ ++GGRQM +P
Sbjct: 62 LMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMHWP 109
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 52.9 bits (126), Expect = 2e-09
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 176 KILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFH 235
KI++ + Y D A +++ APV++ IIPK+++ ++ E E +A +L +
Sbjct: 8 KIIKRELPSTIY-YEDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESNAQILIDIHK 66
Query: 236 LCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHFNILLIGGRQM 277
K A DL + E GYR++ N G A + H + L+GG M
Sbjct: 67 AANKVAEDLGIAEKGYRLITNCGVAAGQTVFHLHYHLLGGVDM 109
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 160
Score = 43.3 bits (101), Expect = 7e-06
Identities = 14/107 (13%), Positives = 35/107 (32%)
Query: 170 HEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFL 229
E K R + Y+ + + L + ++ + PK+ + L + + +
Sbjct: 14 SETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETAD 73
Query: 230 LGHMFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQ 276
L + Q + + +G + H +I ++ R
Sbjct: 74 LFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRA 120
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Length = 139
Score = 39.9 bits (92), Expect = 8e-05
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 173 LYDKILRNKFKYKKVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGH 232
++ KI+ KV Y D A+ +++++ + +IPK ++ ++ E +E A H
Sbjct: 4 IFCKIIAGDIPSAKV-YEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFH 62
Query: 233 MFHLCQKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLI 272
+ D G + NNG ++ H+++ +I
Sbjct: 63 AVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHII 102
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 37.9 bits (87), Expect = 5e-04
Identities = 8/87 (9%), Positives = 26/87 (29%)
Query: 186 KVIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLGHMFHLCQKFAFDLK 245
V L +A + P ++ + P + + + + ++ L
Sbjct: 13 VVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHF 72
Query: 246 MREGYRVVINNGHAGNHNLTHFNILLI 272
+ +G + H ++ ++
Sbjct: 73 HGTSLTFSMQDGPEAGQTVKHVHVHVL 99
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 37.7 bits (87), Expect = 7e-04
Identities = 8/97 (8%), Positives = 24/97 (24%), Gaps = 2/97 (2%)
Query: 173 LYDKILRNKFKYKK-VIYNDSLCWAYRELTKLAPVYINIIPKKNLTSLAEAQEEDAFLLG 231
+ ++ + + A P ++PK ++ + + + L
Sbjct: 20 MLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLA 79
Query: 232 HMFHLCQKFAFDLKMRE-GYRVVINNGHAGNHNLTHF 267
+L Y + + H+
Sbjct: 80 LALKKLTSRYDNLFQCSFPYSMGWHGAPFNGEENQHW 116
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 192
Score = 31.3 bits (71), Expect = 0.10
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 203 LAPVYINIIPKK-NLTSLAEAQEEDAFLLGHMFHLCQKFAFDLKM--REGYRVVINNGHA 259
L +Y+ I + + SL + E LL ++ Q+ + RV ++ +
Sbjct: 67 LDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQVTGDRLRVYLHYLPS 126
Query: 260 GNHNLTHF 267
H HF
Sbjct: 127 YYHLHVHF 134
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
cellulolyticum [TaxId: 1521]}
Length = 431
Score = 28.4 bits (63), Expect = 1.3
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 6/93 (6%)
Query: 165 RLLYDHEKLYDKILRNKFKYKKVIYNDSLCWAYRELTKLA--PVYIN----IIPKKNLTS 218
+ LY K + + Y+ + D L WA L YI I N +
Sbjct: 185 KELYAMGKANQGVGNGQSFYQATSFGDDLAWAATWLYTATNDSTYITDAEQFITLGNTMN 244
Query: 219 LAEAQEEDAFLLGHMFHLCQKFAFDLKMREGYR 251
+ Q++ M+ + ++ Y+
Sbjct: 245 ENKMQDKWTMCWDDMYVPAALRLAQITGKQIYK 277
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase
catalytic domain {Archaeon Pyrococcus horikoshii [TaxId:
53953]}
Length = 188
Score = 27.8 bits (61), Expect = 1.6
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 151 EEFMKRITLKTVPGRLLYDHEKLYDKILRNKFKYKKVIYNDSL 193
E + L +V L+ + ++LY L+N ++ ++ +
Sbjct: 145 LELGSEVPLLSVFRSLITNLDRLYLNFLKNPMDILNLVRDNMI 187
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 26.0 bits (56), Expect = 6.5
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 238 QKFAFDLKMREGYRVVINNGHAGNHNLTHFNILLIGGRQMRY 279
+F F ++ V NNGH+ L + + GG Y
Sbjct: 46 GRFFFSGYDKKQTWTVQNNGHSVMMLLENKASISGGGLPAPY 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.411
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,372,115
Number of extensions: 69176
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 17
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.1 bits)