BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9254
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JYN|A Chain A, A Novel Solution Nmr Structure Of Protein Yst0336 From
Saccharomyces Cerevisiae. Northeast Structural Genomics
Consortium Target Yt51ONTARIO CENTRE FOR STRUCTURAL
Proteomics Target Yst0336
Length = 146
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 24 AEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDLK-- 81
AE N +E + AV+ AE Y+ +L SV LRLT DDEI ++F FP+ K
Sbjct: 6 AETADNLEDIEKQFAVVAVEQAETYWKLLTSVPGSKLRLTKFDDEIYENFMERFPEYKDV 65
Query: 82 --VDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEANTMLSTRIQ 139
V EEE+K+ E K +WR+F F+ IEDYNFGTLLR DA EY + T R+Q
Sbjct: 66 ERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQ 125
Query: 140 FYAIELARNKEGLNDSI 156
FYA E+ARNK GLND I
Sbjct: 126 FYAFEIARNKHGLNDWI 142
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 71 KSFRADFPDL-----KVDVLNEEEMKSPEGKAKWREFCEKFKDMI 110
K+F ADFPD K D E+ G+ WR E KD++
Sbjct: 293 KTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLV 337
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 71 KSFRADFPDL-----KVDVLNEEEMKSPEGKAKWREFCEKFKDMI 110
K+F ADFPD K D E+ G+ WR E KD++
Sbjct: 293 KTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLV 337
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 122 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 180
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 181 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 240
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 241 PLVREVGRTKLEVKVVIKSNFKPS 264
>pdb|2VJQ|A Chain A, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|B Chain B, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|C Chain C, Formyl-Coa Transferase Mutant Variant W48q
pdb|2VJQ|D Chain D, Formyl-Coa Transferase Mutant Variant W48q
Length = 428
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|2VJP|A Chain A, Formyl-Coa Transferase Mutant Variant W48f
pdb|2VJP|B Chain B, Formyl-Coa Transferase Mutant Variant W48f
Length = 428
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|1T3Z|A Chain A, Formyl-Coa Tranferase Mutant Asp169 To Ser
pdb|1T3Z|B Chain B, Formyl-Coa Tranferase Mutant Asp169 To Ser
Length = 427
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 70 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 110
>pdb|2VJO|A Chain A, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
pdb|2VJO|B Chain B, Formyl-Coa Transferase Mutant Variant Q17a With Aspartyl-
Coa Thioester Intermediates And Oxalate
Length = 428
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|1T4C|A Chain A, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 70 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 110
>pdb|1T4C|B Chain B, Formyl-Coa Transferase In Complex With Oxalyl-Coa
Length = 427
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 70 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 110
>pdb|1VGR|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Glu
pdb|1VGR|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Glu
Length = 427
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 70 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 110
>pdb|1VGQ|A Chain A, Formyl-Coa Transferase Mutant Asp169 To Ala
pdb|1VGQ|B Chain B, Formyl-Coa Transferase Mutant Asp169 To Ala
Length = 427
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 70 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 110
>pdb|1P5H|A Chain A, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5H|B Chain B, Crystal Structure Of Formyl-Coa Transferase (Apoenzyme)
From Oxalobacter Formigenes
pdb|1P5R|A Chain A, Formyl-Coa Transferase In Complex With Coenzyme A
pdb|1P5R|B Chain B, Formyl-Coa Transferase In Complex With Coenzyme A
Length = 428
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|2VJN|A Chain A, Formyl-coa Transferase Mutant Variant G260a
pdb|2VJN|B Chain B, Formyl-coa Transferase Mutant Variant G260a
Length = 428
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|2VJM|B Chain B, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|2VJK|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJK|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Oxalyl-Coa
pdb|2VJL|A Chain A, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJL|B Chain B, Formyl-Coa Transferase With Aspartyl-Coa Thioester
Intermediate Derived From Formyl-Coa
pdb|2VJM|A Chain A, Formyl-Coa Transferase With Aspartyl-Formyl Anhydide
Intermediate
Length = 428
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 51 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 109
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 110 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 169
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 170 PLVREVGRTKLEVKVVIKSNFKPS 193
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 58 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 116
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 117 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 176
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 177 PLVREVGRTKLEVKVVIKSNFKPS 200
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 36 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 94
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 95 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 154
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 155 PLVREVGRTKLEVKVVIKSNFKPS 178
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 22 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 80
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 81 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 140
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 141 PLVREVGRTKLEVKVVIKSNFKPS 164
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Query: 46 EVYFNILCSVD----PKILRLTAH--DDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKW 99
E++ ++L SV+ P+ L+AH ++KS+ + P+ K +N++ + +GK
Sbjct: 25 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTA 83
Query: 100 REFCEKFKD--MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQ 139
E + K I+D F +RL GE+ + + +L R+
Sbjct: 84 DETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVI 143
Query: 140 FYAIELARNKEGLNDSIRDNFKPS 163
E+ R K + I+ NFKPS
Sbjct: 144 PLVREVGRTKLEVKVVIKSNFKPS 167
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Query: 50 NILCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKD- 108
N+L S ++L ++KS+ + P+ K +N++ + +GK E + K
Sbjct: 182 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFG-MNDKIVIEKQGKGTADETSKSGKQS 240
Query: 109 -MIEDYNFGTLLRLD------------AKGEY------SEANTMLSTRIQFYAIELARNK 149
I+D F +RL GE+ + + +L R+ E+ R K
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 150 EGLNDSIRDNFKPS 163
+ I+ NFKPS
Sbjct: 301 LEVKVVIKSNFKPS 314
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 61 RLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWR---EFCEKFKDMIEDYNFGT 117
+L A D + R +FP LKV ++ E+K GKA +F + + Y F
Sbjct: 35 KLNAED---FRHLRDEFPSLKVLDISNAEIKXYSGKAGTYPNGKFYIYXANFVPAYAFSN 91
Query: 118 LLRLDAKGEYSEANTMLSTRIQ 139
++ KG+ + +LS +I+
Sbjct: 92 VVNGVTKGKQTLEKVILSEKIK 113
>pdb|3UBM|A Chain A, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|B Chain B, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|C Chain C, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
pdb|3UBM|D Chain D, Formyl-Coa:oxalate Coa-Transferase From Acetobacter Aceti
Length = 456
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 58 KILRLTAHDDEILKSFRADFPD---LKVDVLN------EEEMKSPEGKAKWREFCEKFKD 108
KI R+ D I ++ D PD L +LN E K+PEGKA + E C K+ D
Sbjct: 61 KIERVGVGD--ITRNQLRDIPDADALYFTMLNCNKRSVELNTKTPEGKAVF-EKCIKWAD 117
Query: 109 -MIEDYNFGTLLRLDAKGEY 127
++E++ G + R+ EY
Sbjct: 118 ILLENFRPGAMERMGFTWEY 137
>pdb|1X46|A Chain A, Crystal Structure Of A Hemoglobin Component (Ta-Vii) From
Tokunagayusurika Akamusi
Length = 150
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 56 DPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIED 112
DP + + A D ++KS A D +VD+L P +AK+ F K + ++D
Sbjct: 1 DPTWVDMEAGDIALVKSSWAQIHDKEVDILYNFFKSYPASQAKFSAFAGKDLESLKD 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,936,562
Number of Sequences: 62578
Number of extensions: 196539
Number of successful extensions: 608
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 30
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)