BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9254
(167 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BVG4|PBDC1_HUMAN Protein PBDC1 OS=Homo sapiens GN=PBDC1 PE=1 SV=1
Length = 233
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 106/147 (72%)
Query: 10 AGELVAGASVLSRPAEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEI 69
+GELV+ A LS PAE Y NDP +E W +A+ HAEVY+ ++ SVDP+ L+LT DD+I
Sbjct: 12 SGELVSVAHALSLPAESYGNDPDIEMAWAMRAMQHAEVYYKLISSVDPQFLKLTKVDDQI 71
Query: 70 LKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSE 129
FR +F L++DVL+ EE+KS K KWR FC KF ++ED+N+GTLLRLD Y+E
Sbjct: 72 YSEFRKNFETLRIDVLDPEELKSESAKEKWRPFCLKFNGIVEDFNYGTLLRLDCSQGYTE 131
Query: 130 ANTMLSTRIQFYAIELARNKEGLNDSI 156
NT+ + RIQF+AIE+ARN+EG N ++
Sbjct: 132 ENTIFAPRIQFFAIEIARNREGYNKAV 158
>sp|Q9D0B6|PBDC1_MOUSE Protein PBDC1 OS=Mus musculus GN=Pbdc1 PE=2 SV=1
Length = 198
Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 104/147 (70%)
Query: 10 AGELVAGASVLSRPAEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEI 69
+GE ++ A LS P E Y NDP +E W +A+ HAEVY+ ++ SVDP+ L+LT DD+I
Sbjct: 12 SGEALSIAHALSHPPESYGNDPDIEMAWAIRAMQHAEVYYKLISSVDPQFLKLTKVDDQI 71
Query: 70 LKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSE 129
FR F L+VDVL+ EE+KS K KWR FC KF+ ++EDYN+GTLLRLD Y+E
Sbjct: 72 YSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTE 131
Query: 130 ANTMLSTRIQFYAIELARNKEGLNDSI 156
NT+ + RIQF+AIE+ARN+EG N ++
Sbjct: 132 ENTIFAPRIQFFAIEIARNREGYNKAV 158
>sp|Q08971|YP225_YEAST Protein PBDC1 homolog OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPL225W PE=1 SV=1
Length = 146
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 24 AEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDLK-- 81
AE N +E + AV+ AE Y+ +L SV LRLT DDEI ++F FP+ K
Sbjct: 6 AETADNLEDIEKQFAVVAVEQAETYWKLLTSVPGSKLRLTKFDDEIYENFMERFPEYKDV 65
Query: 82 --VDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEANTMLSTRIQ 139
V EEE+K+ E K +WR+F F+ IEDYNFGTLLR DA EY + T R+Q
Sbjct: 66 ERVKKFTEEELKTKEAKERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQ 125
Query: 140 FYAIELARNKEGLNDSI 156
FYA E+ARNK GLND I
Sbjct: 126 FYAFEIARNKHGLNDWI 142
>sp|O59727|YHX7_SCHPO Protein PBDC1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPBC3E7.07c PE=3 SV=1
Length = 147
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 4/138 (2%)
Query: 24 AEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDLK-- 81
AE N +E + KAV+ A++Y+++L L+LT +DDEI + FP+ K
Sbjct: 8 AENAENAAEIEMQFAVKAVEQAQIYWSLLEMRKGSELKLTKYDDEIFEDLINTFPEFKDP 67
Query: 82 --VDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEANTMLSTRIQ 139
+NE+EMKS +GKA WR F +++ ++DYNFGTLLR+ EY + T+ R+Q
Sbjct: 68 KTASFVNEDEMKSAKGKAAWRPFLMRYEKKVDDYNFGTLLRIKNTDEYEQETTIFVPRMQ 127
Query: 140 FYAIELARNKEGLNDSIR 157
F A E+ARN+ GLND I+
Sbjct: 128 FLAYEIARNRYGLNDWIK 145
>sp|A1RW13|RUBPS_PYRIL Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_1998
PE=3 SV=2
Length = 261
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 2 AQISADLGAGELVAGASV-LSRPAEEYV--NDPS--VEAMWVSKAVDHAEVYFNILCSVD 56
A++ A L AG + AGA + L ++ + DP V +WV + + + + L +
Sbjct: 101 AELIAKLAAGAIDAGAKIILGVHVDDVIFRGDPPRVVGLLWVWTPIQMSGSHVDPLYTQA 160
Query: 57 PKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKF 106
+L T HD E++ P+L ++V E K+ W E EK
Sbjct: 161 KAVLDATGHDAEVISIAARKVPELGIEVRGE--------KSAWAEVSEKL 202
>sp|B1YDX0|RUBPS_PYRNV Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=Tneu_1052 PE=3 SV=1
Length = 259
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 2 AQISADLGAGELVAGASV-LSRPAEEYV--NDPSVEA--MWVSKAVDHAEVYFNILCSVD 56
A++ A L AG + AGA + L ++ + DP A +WV + + + + L +
Sbjct: 101 AELIAKLAAGAIDAGAKIILGVHVDDVIFRGDPPRVAGLLWVWTPIQMSGSHVDPLYTQA 160
Query: 57 PKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKF 106
+L T HD E++ P+L V+V E K+ W E EK
Sbjct: 161 RAVLDATGHDAEVISIASRKVPELGVEVRGE--------KSAWAEVSEKL 202
>sp|Q8ZZM5|RUBPS_PYRAE Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=PAE0175 PE=3 SV=1
Length = 261
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 2 AQISADLGAGELVAGASVLSRPAEEYVND-------PSVEAM-WVSKAVDHAEVYFNILC 53
A++ A L AG + AGA ++ +V+D P V + W+ + + ++ + L
Sbjct: 101 AELIAKLAAGAVDAGAKII---LGVHVDDVIFRGDPPRVTGLLWIWTPIQMSGMHVDPLY 157
Query: 54 SVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKF 106
+ ++ T HD E++ P+L + V+ E K+ W E EK
Sbjct: 158 TQAKAVIDATGHDAEVVSVAARKVPELGIQVVGE--------KSAWSEVSEKL 202
>sp|A4WKY7|RUBPS_PYRAR Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498
PE=3 SV=2
Length = 261
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 2 AQISADLGAGELVAGASV-LSRPAEEYV--NDPSVEA--MWVSKAVDHAEVYFNILCSVD 56
A++ A L AG + AGA + L ++ + DP A +W+ + + ++ + L ++
Sbjct: 101 AELIAKLAAGAIDAGAKIILGVHVDDVIFRGDPPRVAGLLWIWTPIQMSGMHVDPLYTMA 160
Query: 57 PKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKF 106
++ T HD E++ P+L + + E K+ W E EK
Sbjct: 161 KAVIDATGHDAEVISVAARKVPELGIQLPGE--------KSAWSEVSEKL 202
>sp|P09880|TRNL_YEAST tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRL1 PE=1 SV=1
Length = 827
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 23/114 (20%)
Query: 59 ILRLTAHDDEILKSFRADFPDLKVD----VLNEEEMKSPEGKAK--WREFCEKFKDMIED 112
+ R A D E+ + F+ KV + M S E +AK W+ +C ++ D I +
Sbjct: 645 VKRCIASDAELTEKFKHLLASGKVQKELHITLGHVMSSREKEAKKLWKSYCNRYTDQITE 704
Query: 113 YNFGTLLRLDAKGEYSEANTMLST---------------RIQFYAIELARNKEG 151
YN + +A+G + NT + T +I +EL+++K+G
Sbjct: 705 YNNNRI--ENAQGSGNNQNTQVKTTDKLNFRLEKLCWDEKIIAIVVELSKDKDG 756
>sp|Q6EVZ2|YCF1_NYMAL Putative membrane protein ycf1 OS=Nymphaea alba GN=ycf1 PE=3 SV=1
Length = 1976
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 67 DEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE---------KFKDMIEDYNFGT 117
D+++ S + D+ L + EMKSP + K ++ ++D+ + +G+
Sbjct: 1400 DQLIHSGKKDYSKLGLLKSPSREMKSPSREKKIKKHYRYDLLSYKYLNYEDVKDSNIYGS 1459
Query: 118 LLRLDAKGEYSEANTMLSTRIQFYAIELARNKEGLNDSIRDNFKPSRTK 166
L+++ GE S NT FYAI +NDS+ D + R +
Sbjct: 1460 PLQVNRHGEISNYNT--HKYKSFYAIT-------INDSLEDKYTIDRDQ 1499
>sp|A3MWF6|RUBPS_PYRCJ Putative ribose 1,5-bisphosphate isomerase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=Pcal_1555 PE=3
SV=1
Length = 261
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 2 AQISADLGAGELVAGASVLSRPAEEYV---NDPSVEA--MWVSKAVDHAEVYFNILCSVD 56
A++ A L AG + AGA +L + V DP A +W+ + + ++ + L +
Sbjct: 101 AELIAKLAAGAIDAGAKILLGVHVDDVIFRGDPPRVAGLLWIWTPIQMSGMHVDPLYTQA 160
Query: 57 PKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKF 106
++ T HD E++ P+L + + E K+ W E EK
Sbjct: 161 KAVIDATGHDAEVVSVAARKVPELGLQLQGE--------KSAWSEVSEKL 202
>sp|Q1RHU4|PYRG_RICBR CTP synthase OS=Rickettsia bellii (strain RML369-C) GN=pyrG PE=3
SV=1
Length = 540
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 138 IQFYAIELARNKEGLNDSIRDNFKPSRTK 166
+Q AIE+ARN GL D++ + FK + TK
Sbjct: 382 MQLAAIEIARNLVGLKDAVTEEFKTAGTK 410
>sp|P28607|ARS_PSEVC Arylsulfatase OS=Pseudoalteromonas carrageenovora GN=atsA PE=3 SV=1
Length = 328
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 77 FPDLKVDVLNEEEMKSPEGKAKWREF-CEKFKDMIEDYN 114
PD VDV+ P+G +W++F FK ++DY
Sbjct: 169 LPDFTVDVIRNSHYSWPKGSEEWKKFQALSFKFSLQDYT 207
>sp|Q3KHM4|AMPA_PSEPF Probable cytosol aminopeptidase OS=Pseudomonas fluorescens (strain
Pf0-1) GN=pepA PE=3 SV=1
Length = 496
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 38 VSKAVDHAEVYFNI------LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMK 91
V +AV+HA N L ++ P I T ++ K+ +F DLKV+VL+E+++K
Sbjct: 168 VQRAVNHATAIANGMAFTRNLGNLPPNICHPTFLGEQA-KNLGKEFKDLKVEVLDEKKIK 226
Query: 92 S 92
S
Sbjct: 227 S 227
>sp|A9AHN6|SYC_BURM1 Cysteine--tRNA ligase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=cysS PE=3 SV=1
Length = 465
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 37 WVSKAVDHAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEE----MKS 92
W+ +A+ + Y + +D KI+R + E +KS F +D ++E+E ++
Sbjct: 55 WL-RAIGYRVTYVRNITDIDDKIIRRAVENGETIKSLTDRF----IDAMHEDEDALGIQR 109
Query: 93 PEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEAN 131
P+ + + +F + MIE RL+A G +A
Sbjct: 110 PDIEPRATQFIPQMLGMIE--------RLEANGYAYQAT 140
>sp|Q6CQA6|GPN3_KLULA GPN-loop GTPase 3 homolog KLLA0D18557g OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=KLLA0D18557g PE=3 SV=2
Length = 271
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 48 YFNILCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFK 107
+ NIL +D L +H+ + LK F P L D +NEE K+ + E
Sbjct: 168 HINILSKLD---LVKDSHNKKALKKFLNPDPLLLTDKVNEET------NPKFHKLNEAIA 218
Query: 108 DMIEDYNFGTLLRLDAKGEYSEANTMLS 135
++++D+ L L+AK S +T+LS
Sbjct: 219 NLVDDFGMVQFLPLEAKNPES-VSTILS 245
>sp|B7GHN1|KCY_ANOFW Cytidylate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 /
WK1) GN=cmk PE=3 SV=1
Length = 225
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 44 HAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFC 103
HAEV +L SV+ + R H++ +L+ +DF LK ++ +++ S A +
Sbjct: 139 HAEVKIFLLASVEERAKR--RHEENVLRGIPSDFEQLKEEIARRDQIDSERAVAPLK--- 193
Query: 104 EKFKDMIE 111
K +D IE
Sbjct: 194 -KAEDAIE 200
>sp|O06644|FCTA_OXAFO Formyl-coenzyme A transferase OS=Oxalobacter formigenes GN=frc PE=1
SV=3
Length = 428
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 87 EEEMKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEY 127
E +MK+PEGK + +K M+E++ G L R+ EY
Sbjct: 71 ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEY 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,255,898
Number of Sequences: 539616
Number of extensions: 2426685
Number of successful extensions: 6749
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 6738
Number of HSP's gapped (non-prelim): 30
length of query: 167
length of database: 191,569,459
effective HSP length: 109
effective length of query: 58
effective length of database: 132,751,315
effective search space: 7699576270
effective search space used: 7699576270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)