Query psy9254
Match_columns 167
No_of_seqs 118 out of 166
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:46:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jyn_A UPF0368 protein YPL225W 100.0 6.3E-83 2.1E-87 506.9 12.9 139 21-159 3-145 (146)
2 1p3q_Q VPS9P, vacuolar protein 49.6 4.9 0.00017 26.8 0.7 19 67-85 13-31 (54)
3 2dhy_A CUE domain-containing p 44.9 8 0.00027 26.5 1.2 31 55-86 8-38 (67)
4 2c6y_A Forkhead box protein K2 42.2 44 0.0015 24.7 5.0 37 52-104 29-65 (111)
5 1wgl_A TOLL-interacting protei 32.2 17 0.00059 24.0 1.3 22 65-86 8-29 (59)
6 1vtn_C HNF-3/FORK head DNA-rec 30.3 58 0.002 23.6 4.0 68 48-132 13-90 (102)
7 3bpy_A FORK head domain, forkh 27.4 60 0.002 22.7 3.5 27 52-82 18-44 (85)
8 2yfv_C SCM3, KLLA0F05115P; cel 23.0 40 0.0014 23.2 1.8 18 94-112 33-50 (63)
9 2a07_F Forkhead box protein P2 21.4 52 0.0018 23.6 2.2 37 52-104 16-52 (93)
10 3l2c_A Forkhead box protein O4 21.1 88 0.003 23.0 3.5 41 52-103 37-77 (110)
No 1
>2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario centre for structural proteomics, OCSP, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-83 Score=506.91 Aligned_cols=139 Identities=47% Similarity=0.728 Sum_probs=137.4
Q ss_pred CCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCcchHHHHHHHHhhCCCC----CccccChhhhcCcccc
Q psy9254 21 SRPAEEYVNDPSVEAMWVSKAVDHAEVYFNILCSVDPKILRLTAHDDEILKSFRADFPDL----KVDVLNEEEMKSPEGK 96 (167)
Q Consensus 21 ~~~ae~~~N~~~iE~~wAvkA~ehAe~y~~LL~sv~ps~LrLTk~DDeIy~~Fr~~FPe~----~v~~i~E~~lKs~~~K 96 (167)
+||||+|+|||+||+||||||+||||||||||+||+|+.|||||+||+||++||++||+| +|.+|+|++|||++||
T Consensus 3 ~~~ae~~~N~~~iE~~wAvkA~ehAe~y~~LL~sv~ps~LrLTk~DDeIY~~Fr~~FP~~~~~~~v~~i~e~~lKs~~~K 82 (146)
T 2jyn_A 3 TFNAETADNLEDIEKQFAVVAVEQAETYWKLLTSVPGSKLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAK 82 (146)
T ss_dssp TSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSSTTHHHHHHHHHHHCTTTCSHHHHHBCCSTTTSSHHHH
T ss_pred CCChhhccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccHHHHHHHHHHHCccccccccccccCHHHHhCchhh
Confidence 899999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHhhcccccCccceeeeccCCCCCCCCCceehhhHHHHHHHHHhccCCCcHHHHhh
Q psy9254 97 AKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEANTMLSTRIQFYAIELARNKEGLNDSIRDN 159 (167)
Q Consensus 97 ekWR~F~~~fe~~VeDyNfGTLLR~d~~~eY~e~NTifv~RiQFyAIEIARNReGlNd~~~~~ 159 (167)
++||+||++|+++|+|||||||||+||+++||++|||||||||||||||||||+|||||++++
T Consensus 83 ekWR~f~~~f~~~v~DynfGTLLR~d~~~eY~~~ntifv~RiQF~AIEIARNreGlNd~~~~~ 145 (146)
T 2jyn_A 83 ERWRKFFTIFEKKIEDYNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNKHGLNDWIVGQ 145 (146)
T ss_dssp HHHHHHHHHHTTTCSCTTSCEEEESBTTSCSCSTTEEEECHHHHHHHHHHHHHTTTTGGGTTC
T ss_pred HHHHHHHHHHhCccccCCceeEEecCCCcccCCCceEEehhHHHHHHHHHHhhccchHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 2
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=49.56 E-value=4.9 Score=26.78 Aligned_cols=19 Identities=21% Similarity=0.614 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCCCCcccc
Q psy9254 67 DEILKSFRADFPDLKVDVL 85 (167)
Q Consensus 67 DeIy~~Fr~~FPe~~v~~i 85 (167)
.+-++++++.||++|..+|
T Consensus 13 ~~~~~~L~~MFP~lD~evI 31 (54)
T 1p3q_Q 13 KDTLNTLQNMFPDMDPSLI 31 (54)
T ss_dssp HHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHcccCCHHHH
Confidence 4567899999999996554
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.88 E-value=8 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.487 Sum_probs=21.9
Q ss_pred cCCCccccCcchHHHHHHHHhhCCCCCccccC
Q psy9254 55 VDPKILRLTAHDDEILKSFRADFPDLKVDVLN 86 (167)
Q Consensus 55 v~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~ 86 (167)
-+..++...+.++ ..+++++.||+++..+|.
T Consensus 8 ~~~~~~~~~~~~~-~v~~L~~MFP~lD~~vI~ 38 (67)
T 2dhy_A 8 RPARQVRRLEFNQ-AMDDFKTMFPNMDYDIIE 38 (67)
T ss_dssp CCCCCCCCCCSHH-HHHHHHHHCSSSCHHHHH
T ss_pred CcchhccCCCHHH-HHHHHHHHCCCCCHHHHH
Confidence 3555666655554 568899999999976653
No 4
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=42.15 E-value=44 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=27.8
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHHH
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE 104 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~~ 104 (167)
|.+-+...|.| .|||+-+.+.||-+.- ++..|++=+.
T Consensus 29 I~~sp~~~LtL----~eIY~~I~~~fPyyr~------------~~~gWqNSIR 65 (111)
T 2c6y_A 29 ITMAPDKQLTL----NGIYTHITKNYPYYRT------------ADKGWQNSIR 65 (111)
T ss_dssp HHTSTTSCEEH----HHHHHHHHHHCTTSCT------------TCHHHHHHHH
T ss_pred HHhCCCCCCcH----HHHHHHHHHcCCcccc------------CCCeeecchh
Confidence 34456677877 6999999999999852 3678887553
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=32.19 E-value=17 Score=24.02 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=16.9
Q ss_pred chHHHHHHHHhhCCCCCccccC
Q psy9254 65 HDDEILKSFRADFPDLKVDVLN 86 (167)
Q Consensus 65 ~DDeIy~~Fr~~FPe~~v~~i~ 86 (167)
+.++-.+.+++.||+++..+|.
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~ 29 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIR 29 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHH
Confidence 3456678899999999976553
No 6
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=30.30 E-value=58 Score=23.62 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHHH-------Hhhcccc---cCccce
Q psy9254 48 YFNILCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE-------KFKDMIE---DYNFGT 117 (167)
Q Consensus 48 y~~LL~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~~-------~fe~~Ve---DyNfGT 117 (167)
.+.|+ +-+...|.| .|||+-+.+.||-+.- +...|++=+. .|.+.-. +-.-|.
T Consensus 13 ~~AI~-~sp~~~LtL----~eIY~~I~~~fpyyr~------------~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~ 75 (102)
T 1vtn_C 13 TMAIQ-QAPGKMLTL----SEIYQWIMDLFPYYRE------------NQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGS 75 (102)
T ss_dssp HHHHH-TSTTSCBCH----HHHHHHHHHHCGGGGS------------CHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSC
T ss_pred HHHHH-hCCCCCCcH----HHHHHHHHHcCCcccc------------CCCchhhhhhhhhhhccceEecCCCCCCCCCcc
Confidence 34444 446667777 6999999999998753 2578887543 4544321 234466
Q ss_pred eeeccCCCCCCCCCc
Q psy9254 118 LLRLDAKGEYSEANT 132 (167)
Q Consensus 118 LLR~d~~~eY~e~NT 132 (167)
+-.+|++.+..=+|-
T Consensus 76 ~W~l~p~~~~~f~~g 90 (102)
T 1vtn_C 76 YWALHPSSGNMFENG 90 (102)
T ss_dssp EEEECGGGCSTTCSS
T ss_pred eEEECcCHHHHhhcC
Confidence 777776655433343
No 7
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=27.40 E-value=60 Score=22.75 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=21.0
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCc
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKV 82 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v 82 (167)
|.+.+...|.| .+||+-+.+.||-+.-
T Consensus 18 i~~sp~~~ltL----~eIY~~i~~~fpyy~~ 44 (85)
T 3bpy_A 18 IESAPEKRLTL----AQIYEWMVRTVPYFKD 44 (85)
T ss_dssp HHHSTTSCBCH----HHHHHHHHHHCGGGTT
T ss_pred HHhCCcCCccH----HHHHHHHHHhCcchhc
Confidence 34556667777 4999999999998854
No 8
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=22.96 E-value=40 Score=23.20 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=14.8
Q ss_pred cccHHHHHHHHHhhccccc
Q psy9254 94 EGKAKWREFCEKFKDMIED 112 (167)
Q Consensus 94 ~~KekWR~F~~~fe~~VeD 112 (167)
.-|..|...|.+|+. ++|
T Consensus 33 rmK~~w~~Ii~KY~~-~ed 50 (63)
T 2yfv_C 33 NMKRVWSQIIQKYES-IDN 50 (63)
T ss_dssp HHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHhc-ccC
Confidence 347899999999986 676
No 9
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=21.36 E-value=52 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=26.8
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHHH
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE 104 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~~ 104 (167)
|.+-+...|.| .|||+-+.+.||-+.- +...|++=+.
T Consensus 16 I~~sp~~~ltL----~eIY~~i~~~fpyyr~------------~~~gWkNSIR 52 (93)
T 2a07_F 16 IMESSDRQLTL----NEIYSWFTRTFAYFRR------------NAATWKNAVR 52 (93)
T ss_dssp HHHSTTSCBCH----HHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHhCCCCCccH----HHHHHHHHHhCCcccc------------CCCccccccc
Confidence 33456677776 6999999999998753 2568987543
No 10
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=21.08 E-value=88 Score=22.95 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=27.1
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHH
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFC 103 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~ 103 (167)
|.+.+...|.| .+||+-+.+.||-|.-..= ..++..|++=+
T Consensus 37 I~~sp~~~LtL----~eIY~~I~~~fPyyr~~~~-------~~s~~gWqNSI 77 (110)
T 3l2c_A 37 IESAPEKRLTL----AQIYEWMVRTVPYFKDKGD-------SNSSAGWKNSI 77 (110)
T ss_dssp HHHSTTSCBCH----HHHHHHHHHHCGGGTTCTT-------CCTTSHHHHHH
T ss_pred HHhCCccCcCH----HHHHHHHHHhCchhhcCcc-------ccCCCCcccch
Confidence 34556666777 5999999999998854210 12356788654
Done!