Query psy9254
Match_columns 167
No_of_seqs 118 out of 166
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 22:46:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqza2 d.104.1.3 (A:1-241) Lp 74.6 0.78 5.7E-05 34.5 2.5 44 65-116 197-241 (241)
2 d1mn3a_ a.5.2.4 (A:) Vacuolar 72.2 0.66 4.8E-05 29.4 1.3 20 66-85 12-31 (54)
3 d1vcoa1 c.23.16.1 (A:298-547) 55.7 2.1 0.00015 34.1 1.6 27 135-161 94-120 (250)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 47.0 3.4 0.00025 26.4 1.2 19 67-85 10-28 (59)
5 d1s1ma1 c.23.16.1 (A:287-544) 45.9 2.4 0.00018 33.8 0.5 27 135-161 93-119 (258)
6 d1b0na1 a.34.1.1 (A:74-108) Si 36.3 7.1 0.00052 22.6 1.4 21 85-105 8-28 (35)
7 d3bpya1 a.4.5.14 (A:93-177) Af 33.4 19 0.0014 23.8 3.5 28 51-82 17-44 (85)
8 d2c6ya1 a.4.5.14 (A:1-98) Inte 30.5 43 0.0031 22.4 5.0 29 48-81 13-41 (98)
9 d1d5va_ a.4.5.14 (A:) Adipocyt 28.2 29 0.0021 23.2 3.8 63 52-130 17-89 (94)
10 d1ka1a_ e.7.1.1 (A:) 3';5'-ade 26.5 45 0.0033 25.8 5.2 53 34-88 5-72 (354)
11 d2hdca_ a.4.5.14 (A:) Genesis 25.6 19 0.0014 24.2 2.4 26 52-81 15-40 (97)
12 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 23.4 23 0.0017 22.8 2.4 26 52-81 9-34 (75)
13 d1mxra_ a.25.1.2 (A:) Ribonucl 22.5 80 0.0058 24.3 6.0 41 28-75 99-142 (339)
14 d2a07f1 a.4.5.14 (F:503-584) F 21.9 25 0.0018 23.0 2.4 37 52-104 15-51 (82)
No 1
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=74.64 E-value=0.78 Score=34.54 Aligned_cols=44 Identities=30% Similarity=0.608 Sum_probs=32.5
Q ss_pred chHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHHH-HhhcccccCccc
Q psy9254 65 HDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE-KFKDMIEDYNFG 116 (167)
Q Consensus 65 ~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~~-~fe~~VeDyNfG 116 (167)
+-+.+.++|.+.|+++....++++++ +..+.+++ +|.. .|+|||
T Consensus 197 ~~~~l~~~f~~~~~~~~~~~l~~~e~------~~~~~l~~~ky~s--~~W~~g 241 (241)
T d1vqza2 197 FRDLLLEYMKKEYPEMTEYVFSEEEL------AEINRIKDTKFGT--WDWNYG 241 (241)
T ss_dssp HHHHHHHHHHHHCTTCEECCCCHHHH------HHHHHHHHHTTTC--HHHHTC
T ss_pred HHHHHHHHHHHHcCCCcccCCCHHHH------HHHHHHHHhHcCC--ccccCC
Confidence 45678889999999887778888775 55556653 6744 788887
No 2
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=72.21 E-value=0.66 Score=29.45 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhCCCCCcccc
Q psy9254 66 DDEILKSFRADFPDLKVDVL 85 (167)
Q Consensus 66 DDeIy~~Fr~~FPe~~v~~i 85 (167)
-.+.++.|++.||++|..+|
T Consensus 12 ~~e~~~~Lk~MFP~~D~~VI 31 (54)
T d1mn3a_ 12 RKDTLNTLQNMFPDMDPSLI 31 (54)
T ss_dssp HHHHHHHHHHHCTTSCHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHH
Confidence 36789999999999997654
No 3
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=55.68 E-value=2.1 Score=34.11 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHhhcC
Q psy9254 135 STRIQFYAIELARNKEGLNDSIRDNFK 161 (167)
Q Consensus 135 v~RiQFyAIEIARNReGlNd~~~~~~~ 161 (167)
|-=||-.+||.|||..|+.++....+.
T Consensus 94 ClGmQ~avIEfARnvlgl~~A~s~Ef~ 120 (250)
T d1vcoa1 94 CLGLQIAVIEFARNVAGLKGANSTEFD 120 (250)
T ss_dssp THHHHHHHHHHHHHTSCCTTCEETTTC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccC
Confidence 677999999999999999987665554
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.99 E-value=3.4 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=15.2
Q ss_pred HHHHHHHHhhCCCCCcccc
Q psy9254 67 DEILKSFRADFPDLKVDVL 85 (167)
Q Consensus 67 DeIy~~Fr~~FPe~~v~~i 85 (167)
.+..+.+++.||++|..+|
T Consensus 10 Ee~i~~LkeMFP~~D~~vI 28 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQEVI 28 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHHHHHHCCCCCHHHH
Confidence 3558899999999996554
No 5
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.91 E-value=2.4 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHhccCCCcHHHHhhcC
Q psy9254 135 STRIQFYAIELARNKEGLNDSIRDNFK 161 (167)
Q Consensus 135 v~RiQFyAIEIARNReGlNd~~~~~~~ 161 (167)
|-=||-.+||.|||..|+.|+....+.
T Consensus 93 ClGmQ~avIE~ARnvlg~~~A~S~Ef~ 119 (258)
T d1s1ma1 93 CLGMQVALIDYARHVANMENANSTEFV 119 (258)
T ss_dssp THHHHHHHHHHHHHHHCCTTCEETTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCCCC
Confidence 677999999999999999887655554
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=36.27 E-value=7.1 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=17.9
Q ss_pred cChhhhcCccccHHHHHHHHH
Q psy9254 85 LNEEEMKSPEGKAKWREFCEK 105 (167)
Q Consensus 85 i~E~~lKs~~~KekWR~F~~~ 105 (167)
|-.|.|.|.-+|+..|+|++-
T Consensus 8 lVkeAM~SGvSK~QFrEflef 28 (35)
T d1b0na1 8 LVRDAMTSGVSKKQFREFLDY 28 (35)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHH
Confidence 446789999999999999863
No 7
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.36 E-value=19 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHhhcCCCccccCcchHHHHHHHHhhCCCCCc
Q psy9254 51 ILCSVDPKILRLTAHDDEILKSFRADFPDLKV 82 (167)
Q Consensus 51 LL~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v 82 (167)
.|.+-+...|.| .|||+-+.+.||-|.-
T Consensus 17 Ai~~sp~~~ltL----~eIY~~i~~~fPyyr~ 44 (85)
T d3bpya1 17 AIESAPEKRLTL----AQIYEWMVRTVPYFKD 44 (85)
T ss_dssp HHHHSTTSCBCH----HHHHHHHHHHCGGGTT
T ss_pred HHHhCCCCCccH----HHHHHHHHHhChhhhc
Confidence 344557778888 6999999999998853
No 8
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.45 E-value=43 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCccccCcchHHHHHHHHhhCCCCC
Q psy9254 48 YFNILCSVDPKILRLTAHDDEILKSFRADFPDLK 81 (167)
Q Consensus 48 y~~LL~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~ 81 (167)
++.|+ +-++..|.| .|||+-+.+.||=+.
T Consensus 13 ~~Ai~-~sp~~~ltL----~eIy~~i~~~fpyfr 41 (98)
T d2c6ya1 13 VQAIT-MAPDKQLTL----NGIYTHITKNYPYYR 41 (98)
T ss_dssp HHHHH-TSTTSCEEH----HHHHHHHHHHCTTSC
T ss_pred HHHHH-hCCCCCccH----HHHHHHHHHhCcccc
Confidence 34444 457778888 599999999999875
No 9
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.18 E-value=29 Score=23.15 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=41.3
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHH-------HHhhccc---ccCccceeeec
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFC-------EKFKDMI---EDYNFGTLLRL 121 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~-------~~fe~~V---eDyNfGTLLR~ 121 (167)
|.+-++..|.|. |||+-+.+.||=+.- +...|++=+ ..|.+.- ++=.-|.+=++
T Consensus 17 I~~sp~~~ltL~----eIY~~i~~~fpyfr~------------~~~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l 80 (94)
T d1d5va_ 17 IQNAPEKKITLN----GIYQFIMDRFPFYRE------------NKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTL 80 (94)
T ss_dssp HHTCSSSSBCHH----HHHHHHHHHCTHHHH------------CCTTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEE
T ss_pred HHhCCCCCccHH----HHHHHHHHHCCccCc------------cccchHHHHHHHccccceEEEcCcCCCCCCCCceEEE
Confidence 444578888884 999999999998853 245587643 3466531 22245777777
Q ss_pred cCCCCCCCC
Q psy9254 122 DAKGEYSEA 130 (167)
Q Consensus 122 d~~~eY~e~ 130 (167)
++..++.=+
T Consensus 81 ~p~~~~~f~ 89 (94)
T d1d5va_ 81 DPDSYNMFE 89 (94)
T ss_dssp CCSCSSTTS
T ss_pred CccHHHHHh
Confidence 777665533
No 10
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.55 E-value=45 Score=25.78 Aligned_cols=53 Identities=26% Similarity=0.465 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHH-----HHHHHHhhcCCCcc------ccCc----chHHHHHHHHhhCCCCCccccChh
Q psy9254 34 EAMWVSKAVDHAE-----VYFNILCSVDPKIL------RLTA----HDDEILKSFRADFPDLKVDVLNEE 88 (167)
Q Consensus 34 E~~wAvkA~ehAe-----~y~~LL~sv~ps~L------rLTk----~DDeIy~~Fr~~FPe~~v~~i~E~ 88 (167)
|.+.|+.|++.|- ++.+++..-+.... ..|. .+..|.+.+++.||+..+ |.||
T Consensus 5 el~~a~~a~~~A~~l~~~~~~~~~~~~~~~~~~K~D~spVT~AD~~~e~~I~~~L~~~fP~~~i--vGEE 72 (354)
T d1ka1a_ 5 ELLVATQAVRKASLLTKRIQSEVISHKDSTTITKNDNSPVTTGDYAAQTIIINAIKSNFPDDKV--VGEE 72 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSEEECTTSCEEEHHHHHHHHHHHHHHHHHCTTCCE--EESC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCceeECCCCCchhHHHHHHHHHHHHHHHHHCCCCEE--EeCC
Confidence 6788998888885 44555554221111 1332 567899999999998753 4555
No 11
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.55 E-value=19 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.3
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCC
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLK 81 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~ 81 (167)
|.+-++..|.|. |||+-+.+.||=+.
T Consensus 15 i~~sp~~~ltL~----eIY~~i~~~fpyfr 40 (97)
T d2hdca_ 15 ILQSPQKKLTLS----GICEFISNRFPYYR 40 (97)
T ss_dssp HHTCTTTCBCHH----HHHHHHHHHCHHHH
T ss_pred HHhCCCcCccHH----HHHHHHHHhCcccc
Confidence 444577778874 89999999999764
No 12
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.38 E-value=23 Score=22.82 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=20.8
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCC
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLK 81 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~ 81 (167)
|.+-+...|.|. |||+-+.+.||-+.
T Consensus 9 i~~sp~~~ltL~----eIy~~i~~~fpy~r 34 (75)
T d1kq8a_ 9 IRDSAGGRLTLA----EINEYLMGKFPFFR 34 (75)
T ss_dssp HTTSSSSCBCHH----HHHHHHHHHCTTGG
T ss_pred HHhCCCCCccHH----HHHHHHHHhCcccc
Confidence 334467778884 99999999999985
No 13
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Probab=22.54 E-value=80 Score=24.27 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHH---HHHHHHHHHHhhcCCCccccCcchHHHHHHHHh
Q psy9254 28 VNDPSVEAMWVSKAV---DHAEVYFNILCSVDPKILRLTAHDDEILKSFRA 75 (167)
Q Consensus 28 ~N~~~iE~~wAvkA~---ehAe~y~~LL~sv~ps~LrLTk~DDeIy~~Fr~ 75 (167)
-..|+++...+.-|. -|+++|-.+|.++.+. ++++|+.+.+
T Consensus 99 ~~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d-------~~~~~~~~~~ 142 (339)
T d1mxra_ 99 ISIPELETWVETWAFSETIHSRSYTHIIRNIVND-------PSVVFDDIVT 142 (339)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC-------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHh
Confidence 445677775544443 4999999999998742 5667776654
No 14
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.87 E-value=25 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=26.6
Q ss_pred HhhcCCCccccCcchHHHHHHHHhhCCCCCccccChhhhcCccccHHHHHHHH
Q psy9254 52 LCSVDPKILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCE 104 (167)
Q Consensus 52 L~sv~ps~LrLTk~DDeIy~~Fr~~FPe~~v~~i~E~~lKs~~~KekWR~F~~ 104 (167)
|.+.+...|.| .|||+-+.+.||=+.. +...|++=+.
T Consensus 15 i~~sp~~~LtL----~eIy~~i~~~fpyyr~------------~~~gWkNSIR 51 (82)
T d2a07f1 15 IMESSDRQLTL----NEIYSWFTRTFAYFRR------------NAATWKNAVR 51 (82)
T ss_dssp HHHSTTSCBCH----HHHHHHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred HHhCCCCCccH----HHHHHHHHHhCccccc------------CCcccchhHh
Confidence 44457777887 5999999999997642 2456887554
Done!