RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9254
         (167 letters)



>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
           formigenes [TaxId: 847]}
          Length = 427

 Score = 27.2 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 90  MKSPEGKAKWREFCEKFKDMIEDYNFGTLLRL 121
           MK+PEGK    +  +K   M+E++  G L R+
Sbjct: 73  MKTPEGKELLEQMIKKADVMVENFGPGALDRM 104


>d1ixca2 c.94.1.1 (A:90-294) LysR-type regulatory protein CbnR
           {Ralstonia eutropha [TaxId: 106590]}
          Length = 205

 Score = 26.0 bits (55), Expect = 2.4
 Identities = 6/48 (12%), Positives = 14/48 (29%)

Query: 68  EILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIEDYNF 115
            +L++F    P   V + +  + +  EG           +        
Sbjct: 19  LLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGI 66


>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli
           [TaxId: 562]}
          Length = 417

 Score = 26.1 bits (56), Expect = 2.4
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 90  MKSPEGKAKWREFCEKFKDMIEDYNFGTLLRLDAKGEYSEA 130
            K+ EGK    +   +   ++E+++ G +  +    E+ + 
Sbjct: 74  TKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQE 114


>d2esna2 c.94.1.1 (A:92-303) Probable LysR-type transcriptional
           regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 212

 Score = 25.1 bits (53), Expect = 4.7
 Identities = 4/63 (6%), Positives = 15/63 (23%), Gaps = 10/63 (15%)

Query: 60  LRLTAHDD-------EILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIED 112
               A D         ++   +   P +++ +      +              F    ++
Sbjct: 10  FVFAATDYTAFALLPPLMNRLQHSAPGVRLRL---VNAERKLSVEALASGRIDFALGYDE 66

Query: 113 YNF 115
            + 
Sbjct: 67  EHE 69


>d2fyia1 c.94.1.1 (A:88-307) LysR-type regulatory protein Cbl
          {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 24.7 bits (52), Expect = 5.7
 Identities = 6/17 (35%), Positives = 15/17 (88%)

Query: 68 EILKSFRADFPDLKVDV 84
          E++K+FR  FP++++++
Sbjct: 23 EVIKAFRELFPEVRLEL 39


>d1al3a_ c.94.1.1 (A:) Cofactor-binding fragment of LysR-type
          protein CysB {Klebsiella aerogenes [TaxId: 28451]}
          Length = 237

 Score = 24.5 bits (52), Expect = 7.0
 Identities = 3/17 (17%), Positives = 9/17 (52%)

Query: 68 EILKSFRADFPDLKVDV 84
           ++K F   +P + + +
Sbjct: 23 GVIKGFIERYPRVSLHM 39


>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
           [TaxId: 562]}
          Length = 620

 Score = 24.5 bits (52), Expect = 7.6
 Identities = 3/27 (11%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 87  EEEMKS-PEGKAKWREFCEKFKDMIED 112
           E  +    E + ++++F +     +  
Sbjct: 575 ESVLTQISEKQCRYQDFMQPLVGTLYQ 601


>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
           {Human (Homo sapiens), E2 J2 [TaxId: 9606]}
          Length = 157

 Score = 24.3 bits (52), Expect = 7.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 91  KSPEGKAKWREFCEKFKDMIEDY 113
           +S     K + FCE F +++E+ 
Sbjct: 134 QSLAFNLKDKVFCELFPEVVEEI 156


>d2nwua1 d.77.1.2 (A:3-144) Hypothetical protein SSo1042 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 142

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 8/54 (14%), Positives = 23/54 (42%)

Query: 59  ILRLTAHDDEILKSFRADFPDLKVDVLNEEEMKSPEGKAKWREFCEKFKDMIED 112
            +R +   +++L +    F   K++   E  +     +A+  +   KF  ++ +
Sbjct: 7   EVRPSEDVNKVLSAISNFFDFEKMNTRKEGIIDILVLEARTLKSLLKFHRVLRN 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0437    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 615,504
Number of extensions: 28057
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 18
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.4 bits)