BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9255
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 OS=Drosophila
melanogaster GN=eRF1 PE=1 SV=2
Length = 438
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/76 (90%), Positives = 71/76 (93%), Gaps = 1/76 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSED-RVLH 99
IG+YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH+ S VLH
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLH 346
Query: 100 LTPEQEKDKSHFTDKE 115
LTPEQEKDKSHFTDKE
Sbjct: 347 LTPEQEKDKSHFTDKE 362
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa
misakiensis GN=ERF1 PE=2 SV=1
Length = 435
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 68/75 (90%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGV+DTL+ALE+G+VE LI WENLD RYVLKNH+T E+++L L
Sbjct: 287 IGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFL 346
Query: 101 TPEQEKDKSHFTDKE 115
P+QEKDK+HFTDK+
Sbjct: 347 KPDQEKDKTHFTDKD 361
>sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 OS=Rattus
norvegicus GN=Etf1 PE=2 SV=3
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus
cuniculus GN=ETF1 PE=1 SV=3
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus
GN=Etf1 PE=1 SV=4
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus
auratus GN=ETF1 PE=1 SV=3
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens
GN=ETF1 PE=1 SV=3
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|Q0VCX5|ERF1_BOVIN Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus
GN=ETF1 PE=2 SV=3
Length = 437
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|Q5R4C7|ERF1_PONAB Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii
GN=ETF1 PE=2 SV=3
Length = 437
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 66/75 (88%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YF EISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL T E+++L+L
Sbjct: 287 IGRYFGEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHFTDKE
Sbjct: 347 TPEQEKDKSHFTDKE 361
>sp|P62498|ERF1_XENTR Eukaryotic peptide chain release factor subunit 1 OS=Xenopus
tropicalis GN=etf1 PE=2 SV=1
Length = 437
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 67/75 (89%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL+ + + E++ L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCNGSEEEKTLYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHF DKE
Sbjct: 347 TPEQEKDKSHFIDKE 361
>sp|P35615|ERF1_XENLA Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis
GN=etf1 PE=2 SV=1
Length = 437
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 66/75 (88%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLD RYVL+ + + E++ L+L
Sbjct: 287 IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDTMRYVLRCNGSEEEKTLYL 346
Query: 101 TPEQEKDKSHFTDKE 115
TPEQEKDKSHF DKE
Sbjct: 347 TPEQEKDKSHFIDKE 361
>sp|O16520|ERF1_CAEEL Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis
elegans GN=erf-1 PE=3 SV=2
Length = 559
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/80 (70%), Positives = 66/80 (82%), Gaps = 1/80 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IG YFDEISQDTGKY FGV+DTL ALE+G++ETLICWENLDI RY +KN S ED +L+L
Sbjct: 295 IGGYFDEISQDTGKYVFGVKDTLAALEMGAIETLICWENLDIVRYKMKN-SLGEDILLNL 353
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
P++EKDKSHFTD E D+
Sbjct: 354 RPDEEKDKSHFTDSETGQDM 373
>sp|P35614|ERF1Z_ARATH Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis
thaliana GN=ERF1-3 PE=2 SV=1
Length = 435
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 64/80 (80%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IGKYF+EISQDTGKY FGVEDTL+ALE+G+VETLI WENLDI RY LKN++T E + HL
Sbjct: 287 IGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHL 346
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
+QE ++S+F D E +L
Sbjct: 347 GKDQENNQSNFHDAETNAEL 366
>sp|Q9LPV8|ERF1Y_ARATH Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis
thaliana GN=ERF1-2 PE=2 SV=1
Length = 434
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 61/80 (76%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IGKYF+EISQDTGKY FGVEDTL+ALE+G++ETLI WENLDI RY LKN +T E V H
Sbjct: 286 IGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHF 345
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
+QE D S+F D E +L
Sbjct: 346 GKDQESDTSNFHDSETNAEL 365
>sp|Q39097|ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis
thaliana GN=ERF1-1 PE=2 SV=2
Length = 436
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 5/90 (5%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IGKYF+EISQDTGKY FGVEDTL ALE G++ETLI WENLDI RYV+KN +T E + HL
Sbjct: 288 IGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHL 347
Query: 101 TPEQEKDKSHF--TDKEMLTDL---LSLLQ 125
EQE + +F D ++ D+ LSLL+
Sbjct: 348 NKEQEANTENFKVADSDLALDVEEKLSLLE 377
>sp|Q5CG95|ERF1_CRYHO Eukaryotic peptide chain release factor subunit 1
OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1
Length = 429
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 60/80 (75%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
I K+FDE++QDTGKY +G+ +TL+ALE+G++E LI WENL+ +R V+KN ST E++V
Sbjct: 283 ITKFFDEVAQDTGKYVYGINETLQALEMGAIELLIVWENLETKRMVVKNPSTGEEKVFLN 342
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
+P ++ D+S F D E +L
Sbjct: 343 SPTEQHDESKFKDPETGAEL 362
>sp|Q5CD95|ERF1_BLEMU Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma
musculus GN=eRF1 PE=2 SV=1
Length = 436
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 59/73 (80%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
+ K+F+E++QDT KYC+GVEDT+R+L +G++E ++ +ENL+ RYVLKN +T ++ L+L
Sbjct: 287 MSKFFEEVAQDTKKYCYGVEDTMRSLIMGAIEVILLFENLNFTRYVLKNPTTGAEKTLYL 346
Query: 101 TPEQEKDKSHFTD 113
TPEQE++ +F +
Sbjct: 347 TPEQEENHDNFME 359
>sp|O59948|ERF1_PODAS Eukaryotic peptide chain release factor subunit 1 OS=Podospora
anserina GN=SU2 PE=3 SV=1
Length = 435
Score = 89.4 bits (220), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/76 (57%), Positives = 61/76 (80%), Gaps = 2/76 (2%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IGKYF+EISQDTG+ C+GVEDTL+ALELG+VETLI +ENL++ R+VLK+ S + ++H
Sbjct: 288 IGKYFEEISQDTGRICYGVEDTLKALELGAVETLIVFENLEVTRWVLKD-SNGAEIIIHS 346
Query: 101 TPEQE-KDKSHFTDKE 115
T +Q+ ++ F DKE
Sbjct: 347 TKQQDAANRDRFMDKE 362
>sp|Q9BMX0|ERF1_DICDI Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium
discoideum GN=erf1 PE=2 SV=2
Length = 441
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
I ++F+EI+QDTGKYCFG+ DTL+AL+LG+ TLI WE+L+ RY+L+ T E++V+ L
Sbjct: 289 ISQFFEEIAQDTGKYCFGIADTLKALDLGAAHTLIVWESLETIRYLLR-LPTGEEKVIFL 347
Query: 101 TPEQEKDKSHFTDKE 115
+Q KD S F DKE
Sbjct: 348 NKDQNKDASVFKDKE 362
>sp|Q9BMM3|ERF1_BLEAM Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma
americanum GN=eRF1 PE=2 SV=1
Length = 436
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 59/73 (80%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
+ K+F+E++QDT KYC+GVEDT+++L +G+VE ++ +ENL+ RYVLKN +T ++ L+L
Sbjct: 287 MSKFFEEVAQDTKKYCYGVEDTMKSLLMGAVEVILLFENLNFTRYVLKNPTTGIEKTLYL 346
Query: 101 TPEQEKDKSHFTD 113
TPEQE++ +F +
Sbjct: 347 TPEQEENHDNFIE 359
>sp|Q9BMM1|ERF1_STYMT Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia
mytilus GN=ERF1 PE=3 SV=1
Length = 445
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
+ K+F+EIS DTG FGV+DT++ALELG+VET++ +E L+I RYV+KN + R L L
Sbjct: 292 VSKFFEEISLDTGMIVFGVQDTMKALELGAVETILLFEELEITRYVIKNPVKGDTRTLFL 351
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
P Q+KD +F D+ D+
Sbjct: 352 NPTQQKDSKYFKDQASGLDM 371
>sp|Q9BMX3|ERF1_OXYTR Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha
trifallax GN=ERF1 PE=3 SV=1
Length = 445
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
+ K+F+EI+ DTG FGV+DT++ALELG+VET++ +E LDI RYVLKN + + ++L
Sbjct: 292 VSKFFEEIALDTGMIVFGVDDTMKALELGAVETVLLFEELDINRYVLKNPVKGDTKTIYL 351
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
Q+KD +F D+E DL
Sbjct: 352 NSTQQKDSKYFKDRETGMDL 371
>sp|Q9BMM0|ERF1_STYLE Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia
lemnae GN=ERF1 PE=3 SV=1
Length = 445
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
+ +F++IS DTG FGV+DT++ALELG+VET++ +E L+I RYV+KN + R L L
Sbjct: 292 VSTFFEQISLDTGMIVFGVQDTMKALELGAVETILLFEELEITRYVIKNPVKGDTRTLFL 351
Query: 101 TPEQEKDKSHFTDKEMLTDL 120
P Q+KD +F D+ D+
Sbjct: 352 NPTQQKDSKYFKDQASGLDM 371
>sp|Q5CD84|ERF1_LOXST Eukaryotic peptide chain release factor subunit 1 OS=Loxodes
striatus GN=eRF1 PE=2 SV=1
Length = 436
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 55/76 (72%)
Query: 39 NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVL 98
N I K F+E++Q++ C+G+ DT++ALE+G+VETL+ WENL+ + LKN T E+ +
Sbjct: 283 NLITKLFEEVAQNSITVCYGLTDTMKALEMGAVETLVIWENLEFIWFKLKNPVTKEESTV 342
Query: 99 HLTPEQEKDKSHFTDK 114
L+P+Q +K+HF D+
Sbjct: 343 VLSPQQATEKNHFQDE 358
>sp|P12385|ERF1_YEAST Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SUP45 PE=1
SV=2
Length = 437
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 2/71 (2%)
Query: 44 YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPE 103
YFDEISQDTGK+C+G++DTL+AL+LG+VE LI +ENL+ RY K+ +E V+
Sbjct: 287 YFDEISQDTGKFCYGIDDTLKALDLGAVEKLIVFENLETIRYTFKDAEDNE--VIKFAEP 344
Query: 104 QEKDKSHFTDK 114
+ KDKS DK
Sbjct: 345 EAKDKSFAIDK 355
>sp|P79063|ERF1_SCHPO Eukaryotic peptide chain release factor subunit 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sup45 PE=1 SV=1
Length = 433
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
I ++FDEIS D+GKYCFGV DT+ AL+ G+VETL+C+ +LD+ RY KN S + ++
Sbjct: 284 IQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKN-SEGNPVITYM 342
Query: 101 TPEQEKDKS 109
T EQE+ S
Sbjct: 343 TKEQEEKDS 351
>sp|Q5CD97|ERF1_DIDNA Eukaryotic peptide chain release factor subunit 1 OS=Didinium
nasutum GN=eRF1 PE=2 SV=1
Length = 437
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
IGK+FDEI++DTGKY FG++DTL A+++GSV+ LI +ENL+ R +L++ + D +++
Sbjct: 289 IGKFFDEIAKDTGKYVFGIKDTLEAMDMGSVDILIIYENLEYNRLILRD---ANDNIVNE 345
Query: 101 TPEQEK 106
T + K
Sbjct: 346 TLHKNK 351
>sp|Q9NAX8|ERF1_TRYBB Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma
brucei brucei GN=ERF1 PE=3 SV=1
Length = 452
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 44 YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRY-VLKNHST-SEDRVLHLT 101
+FD+I+ DT YCFGV+DTL+ LE G+VETLI +E+L+I RY V+KN E+ +H+
Sbjct: 291 FFDQIACDTQLYCFGVQDTLKCLEAGAVETLIVYEDLNIYRYTVVKNRGADDEETFVHVM 350
Query: 102 PEQEKDKSHF 111
E+E +S+
Sbjct: 351 SEEEAKRSNI 360
>sp|Q5CD96|ERF1_DILMA Eukaryotic peptide chain release factor subunit 1 OS=Dileptus
margaritifer GN=eRF1 PE=2 SV=1
Length = 436
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 42/53 (79%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTS 93
+G++FDEIS+DTG++ FG++DT+ LE G+VE L+ +ENL+ R LK+++ +
Sbjct: 289 VGRFFDEISKDTGRFVFGLKDTMEGLEYGAVEVLMIFENLEHNRLSLKDNNNT 341
>sp|Q9U8U5|ERF1_TETTH Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena
thermophila GN=ERF1 PE=2 SV=1
Length = 435
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 39 NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVL 98
N I K+FD I+ D+G +GV+DT++ L G +E ++C+E L R KN T + +
Sbjct: 284 NVISKFFDCIAIDSGTVVYGVQDTMQLLLDGVIENILCFEELTTLRVTRKNKVTEQITHI 343
Query: 99 HLTPEQEKDKSHFTDKE 115
+ P + + HF D E
Sbjct: 344 FIPPNELNNPKHFKDGE 360
>sp|Q9NCP1|ERF1_GIAIN Eukaryotic peptide chain release factor subunit 1 OS=Giardia
intestinalis GN=ERF1 PE=3 SV=1
Length = 457
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 43 KYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK---NHSTSEDRVLH 99
++ + I++DT + CFG+ DT+R LE+ +VE LI W++L R L+ N TS + +
Sbjct: 299 EFTENIAKDTKRVCFGITDTIRCLEMSAVEKLIVWDDLPYHRVTLQCVINGETSAPVIKY 358
Query: 100 LTPEQEKDKSHF 111
L Q + +
Sbjct: 359 LLKSQMSNPKYL 370
>sp|A6UPD8|RF1_METVS Peptide chain release factor subunit 1 OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1
Length = 419
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 32 RDMDLLF--NNIGKYFDE-ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
RD+DL+ N I K+F E I D G +G +R LE+G+++TLI E++++ R +K
Sbjct: 273 RDLDLMKEKNLIQKFFKELIKDDGGLSAYGESQVMRYLEMGAIDTLIVTEDIELTRVTIK 332
>sp|A4FX39|RF1_METM5 Peptide chain release factor subunit 1 OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1
Length = 419
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 32 RDMDLLF--NNIGKYFDE-ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
RD+DL+ N I K+F E I D G +G ++ LE+G+++TLI E++ I R +K
Sbjct: 273 RDLDLMKEKNLIQKFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVK 332
>sp|A9AAH5|RF1_METM6 Peptide chain release factor subunit 1 OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1
Length = 419
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 32 RDMDLLF--NNIGKYFDE-ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
RD+DL+ N I ++F E I D G +G ++ LE+G+++TLI E++ I R +K
Sbjct: 273 RDLDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTIK 332
>sp|P61731|RF1_METMP Peptide chain release factor subunit 1 OS=Methanococcus maripaludis
(strain S2 / LL) GN=prf1 PE=3 SV=1
Length = 419
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 32 RDMDLLF--NNIGKYFDE-ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
RD+DL+ N I ++F E I D G +G ++ LE+G+++TLI E++ I R +K
Sbjct: 273 RDIDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVK 332
>sp|Q8TS00|RF12_METAC Peptide chain release factor subunit 1-2 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=prf12 PE=3 SV=1
Length = 415
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 9/73 (12%)
Query: 17 AVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRA-LELGSVETLI 75
A ++ + ++L ++DM++ +F EI+ ++GK +G ED +RA LE+ +V+ L+
Sbjct: 265 AAEETLQSIDLLKQKKDMEI-------FFKEIATESGKISYG-EDNVRANLEIKAVDVLL 316
Query: 76 CWENLDIQRYVLK 88
E L +R LK
Sbjct: 317 LSEELRAERVTLK 329
>sp|Q8U0J4|RF1_PYRFU Peptide chain release factor subunit 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=prf1
PE=3 SV=1
Length = 420
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 11 YLGRYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGS 70
Y G Y +++LV K + + ++ N + ++ I +DTG +G + +ALELG+
Sbjct: 256 YHGEY-GLRELVAKAADILRDHEVIRERNLVNEFLKHIVKDTGLATYGEREVRKALELGA 314
Query: 71 VETLICWENLDIQRYVLK 88
V+TL+ E D R +K
Sbjct: 315 VDTLLISEGYDKVRVHVK 332
>sp|A5ULL8|RF1_METS3 Peptide chain release factor subunit 1 OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3
SV=1
Length = 412
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 11 YLGRYPAVQDLVGK-YEILNYERDMDLLFNN--IGKYFDEISQDTGKYCFGVEDTLRALE 67
Y G + +++++ K +ILN D+D++ + K+ E+ +D G +G + L
Sbjct: 252 YTGEF-GIREVIDKSADILN---DLDVMQEKKVVQKFLHELVKDKGLASYGEREVRTNLI 307
Query: 68 LGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDK 108
+G+V+TL+ E+L R V K S + + + + E DK
Sbjct: 308 MGAVDTLLLSEDLTAMRKVFKCPSCGNEEEITVKSQSEADK 348
>sp|Q9V151|RF1_PYRAB Peptide chain release factor subunit 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=prf1 PE=3 SV=2
Length = 414
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK-NHSTSED 95
+ ++ + +DTG +G + RALE+G+V+TL+ E D R K NH E+
Sbjct: 282 VNEFLKHVVKDTGLATYGEREVRRALEIGAVDTLLISEGYDKVRVRAKCNHCGWEE 337
>sp|A5UKW7|PELO_METS3 Protein pelota homolog OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pelA PE=3 SV=1
Length = 353
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 4 YFKDKHKYLGRYPAVQDL-----VGKYEILNYERDMDLLFNN--------IGKYFDEISQ 50
Y K+KHK L ++ VG +E+L L N I +EI +
Sbjct: 216 YIKNKHKDLADKAIIESTGSGGRVGIHEVLKKGTVEKLTVENRVASEMVAINNLLEEIGK 275
Query: 51 DTGKYCFGVEDTLRALELGSVETLIC 76
++ K +G ++T++A+ LG+V+ L+
Sbjct: 276 NSSKVAYGEKETVKAINLGAVKQLLV 301
>sp|Q58239|RF1_METJA Peptide chain release factor subunit 1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=prf1 PE=3 SV=2
Length = 421
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD 81
I +D G C+G ++ L AL +G+V+TLI E L+
Sbjct: 292 IKEDGGLACYGEKEVLEALMMGAVDTLIVSEELE 325
>sp|Q8PX75|RF1_METMA Peptide chain release factor subunit 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=prf1 PE=1 SV=1
Length = 415
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 10 KYLGRY-PAVQDLVGKYEILNYE----RDMDLLF--NNIGKYFDEISQDTGKYCFGVEDT 62
K LG + A D G E++N +D++L+ N + +F E+ D+GK +G E
Sbjct: 244 KILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYG-ESQ 302
Query: 63 LRA-LELGSVETLICWENLDIQRYVLK 88
+RA LE+ SV+ L+ E+L +R K
Sbjct: 303 VRANLEINSVDVLLLSEDLRAERVTTK 329
>sp|B5XCB8|THAP1_SALSA THAP domain-containing protein 1 OS=Salmo salar GN=thap1 PE=2 SV=1
Length = 233
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 3 KYFKDKHKYLGRYP-AVQDLVGKYEILNYERDMDLLFNNI--GKYFDEISQDTGKYCFGV 59
+Y KDK+ ++P A D+ GK+ + R NN +Y + SQ K CF
Sbjct: 13 RYHKDKNISFHKFPLARPDVCGKW-VAAMRR------NNFKPTRYSNICSQHFTKDCFKP 65
Query: 60 EDTLRALELGSVETLICWENLDIQRYVLKNHSTSE 94
E R L+ +V +L C+ L I+ L + E
Sbjct: 66 ECNNRVLKENAVPSLFCFSKLQIKAESLADPFPPE 100
>sp|B6YU52|RF1_THEON Peptide chain release factor subunit 1 OS=Thermococcus onnurineus
(strain NA1) GN=prf1 PE=3 SV=1
Length = 415
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 44 YFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHS 91
+F + +DTG +G + +ALELG+V+TL+ E D R K ++
Sbjct: 285 FFRHLVKDTGLITYGEREVRKALELGAVDTLLISEGYDKVRVKAKCNA 332
>sp|Q5JGK6|RF1_PYRKO Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=prf1 PE=3
SV=1
Length = 415
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK 88
I ++F + +DTG +G ++ +ALELG+V+ L+ E D R K
Sbjct: 282 IQEFFKHLVKDTGMITYGEKEVRKALELGAVDKLLISEGYDKVRVRAK 329
>sp|Q8TUM4|RF11_METAC Peptide chain release factor subunit 1-1 OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=prf11 PE=3 SV=1
Length = 415
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 8 KHKYLGRY-PAVQDLVGKYEILNYE----RDMDLLF--NNIGKYFDEISQDTGKYCFGVE 60
+ K LG + A D G E++N +D++L+ N + +F E+ D+GK +G E
Sbjct: 242 QKKILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYG-E 300
Query: 61 DTLRA-LELGSVETLICWENLDIQRYVLK 88
+RA LE+ +V+ L+ E+L +R K
Sbjct: 301 TQVRANLEINAVDVLLLSEDLRAERVTTK 329
>sp|O29048|RF1_ARCFU Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=prf1 PE=3 SV=1
Length = 407
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 20 DLVGKYEILNYERDM----DLLF--NNIGKYFDEISQDTGKYCFGVEDTLRALELGSVET 73
D G YE++ +D+ D++ N + ++ E+++D G +G E+ R +ELG+V+T
Sbjct: 250 DESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVARD-GLAAYGEEEVRRYIELGAVDT 308
Query: 74 LICWENLDIQR 84
L+ E+L +R
Sbjct: 309 LLLSEDLRYER 319
>sp|O59264|RF1_PYRHO Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=prf1 PE=3 SV=1
Length = 417
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLK-NHSTSED 95
+ ++ + +DTG +G + RALE+G+V+ L+ E + R +K NH E+
Sbjct: 285 VNEFLKHVVKDTGLATYGEREVRRALEIGAVDVLLISEGYNKVRVRVKCNHCGWEE 340
>sp|Q9YAF1|RF1_AERPE Peptide chain release factor subunit 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=prf1 PE=1 SV=2
Length = 373
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENL-DIQRYVLKNHSTSEDRVLHLTPEQEK 106
+++ TG +G +D ALE+G+V+TL+ E+ D++ +V K S+ + + PE
Sbjct: 293 LAKGTGMIVYGEKDVEAALEMGAVKTLLIHESREDLEEWVEKAKSSGAQVI--VVPESLA 350
Query: 107 DKSHF 111
+ F
Sbjct: 351 EAEWF 355
>sp|C5ZZZ5|RF1_THESM Peptide chain release factor subunit 1 OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1
Length = 415
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQR 84
+ ++F + +DTG +G ++ +ALELG+V+ L+ E D R
Sbjct: 282 VQQFFKHLVKDTGLITYGEKEVRKALELGAVDILLLSEGYDRVR 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,939,773
Number of Sequences: 539616
Number of extensions: 2000913
Number of successful extensions: 5044
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4983
Number of HSP's gapped (non-prelim): 74
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)