Query psy9255
Match_columns 127
No_of_seqs 108 out of 382
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:47:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03676 aRF1/eRF1 peptide ch 99.8 4.7E-19 1E-23 151.9 9.9 91 17-107 245-341 (403)
2 TIGR00108 eRF peptide chain re 99.8 4.2E-19 9.2E-24 152.2 9.6 101 17-119 249-355 (409)
3 PRK04011 peptide chain release 99.8 1.7E-18 3.7E-23 148.5 10.1 96 17-112 253-354 (411)
4 KOG0688|consensus 99.8 5E-19 1.1E-23 151.7 4.9 103 17-120 253-361 (431)
5 COG1503 eRF1 Peptide chain rel 99.7 1.7E-18 3.6E-23 150.0 6.7 102 16-120 251-358 (411)
6 TIGR00111 pelota probable tran 99.5 5.6E-15 1.2E-19 124.3 5.2 84 16-99 231-327 (351)
7 PF03465 eRF1_3: eRF1 domain 3 99.5 4.3E-15 9.4E-20 107.7 3.2 54 37-90 4-57 (113)
8 COG1537 PelA Predicted RNA-bin 99.3 1E-11 2.2E-16 106.4 7.0 62 21-82 231-300 (352)
9 KOG2869|consensus 98.6 3.6E-08 7.8E-13 85.0 4.3 59 22-80 251-317 (379)
10 PRK05583 ribosomal protein L7A 94.0 0.015 3.4E-07 41.9 0.0 57 48-104 11-70 (104)
11 PTZ00106 60S ribosomal protein 93.8 0.023 4.9E-07 41.4 0.6 52 48-99 19-73 (108)
12 PRK07714 hypothetical protein; 93.8 0.021 4.6E-07 40.3 0.4 55 48-102 12-69 (100)
13 PRK06683 hypothetical protein; 92.9 0.042 9E-07 38.2 0.7 55 50-104 7-64 (82)
14 COG1358 RPL8A Ribosomal protei 92.7 0.067 1.5E-06 39.7 1.7 57 48-104 21-81 (116)
15 PRK01018 50S ribosomal protein 92.3 0.064 1.4E-06 38.1 1.1 52 48-99 10-64 (99)
16 PRK13602 putative ribosomal pr 92.2 0.066 1.4E-06 37.0 1.1 56 47-103 5-63 (82)
17 TIGR03677 rpl7ae 50S ribosomal 92.1 0.39 8.4E-06 35.1 5.0 55 48-102 20-78 (117)
18 PRK07283 hypothetical protein; 91.7 0.24 5.1E-06 35.1 3.4 56 48-103 12-70 (98)
19 PRK04175 rpl7ae 50S ribosomal 91.5 0.32 7E-06 35.9 4.1 55 48-102 24-82 (122)
20 PRK13601 putative L7Ae-like ri 89.6 0.14 2.9E-06 35.8 0.6 50 52-101 6-58 (82)
21 PF01248 Ribosomal_L7Ae: Ribos 87.6 0.89 1.9E-05 30.9 3.6 51 48-98 9-63 (95)
22 COG1911 RPL30 Ribosomal protei 87.0 1.1 2.4E-05 33.0 4.0 34 48-81 13-46 (100)
23 PRK13600 putative ribosomal pr 85.3 1.7 3.8E-05 30.6 4.2 47 53-99 12-61 (84)
24 PRK09190 hypothetical protein; 84.6 3.7 8E-05 33.5 6.4 57 48-104 105-170 (220)
25 PF08032 SpoU_sub_bind: RNA 2' 74.6 4.2 9.1E-05 26.0 3.0 25 55-79 1-26 (76)
26 PTZ00222 60S ribosomal protein 45.5 27 0.00059 29.6 3.5 53 51-103 129-185 (263)
27 PTZ00365 60S ribosomal protein 35.7 28 0.00061 29.6 2.1 55 50-104 128-186 (266)
28 cd06891 PX_Vps17p The phosphoi 33.9 88 0.0019 23.9 4.4 38 17-54 69-127 (140)
29 PRK04966 hypothetical protein; 33.4 97 0.0021 21.4 4.2 43 37-81 13-59 (72)
30 KOG2988|consensus 30.1 76 0.0017 23.9 3.4 37 48-84 20-56 (112)
31 PF06794 UPF0270: Uncharacteri 25.7 1.7E+02 0.0037 20.1 4.3 43 37-81 13-59 (70)
32 PF07511 DUF1525: Protein of u 25.6 47 0.001 24.7 1.6 17 51-67 90-106 (114)
33 PRK15245 type III effector pho 25.5 67 0.0014 27.0 2.6 43 63-105 113-164 (241)
34 cd02130 PA_ScAPY_like PA_ScAPY 25.2 1.9E+02 0.004 20.4 4.7 21 59-79 58-78 (122)
35 cd00338 Ser_Recombinase Serine 25.0 83 0.0018 21.7 2.8 25 57-81 52-76 (137)
36 PRK00415 rps27e 30S ribosomal 25.0 81 0.0018 21.1 2.5 20 84-103 9-28 (59)
37 COG2051 RPS27A Ribosomal prote 24.4 94 0.002 21.5 2.8 26 79-104 12-37 (67)
38 PF03711 OKR_DC_1_C: Orn/Lys/A 22.2 2.3E+02 0.005 21.3 4.9 66 14-82 7-76 (136)
39 PF10122 Mu-like_Com: Mu-like 22.1 1.2E+02 0.0026 19.9 2.8 23 82-104 20-43 (51)
40 PF04502 DUF572: Family of unk 22.0 1.1E+02 0.0023 26.0 3.3 25 80-104 71-95 (324)
41 COG0520 csdA Selenocysteine ly 20.8 2.2E+02 0.0047 24.8 5.0 55 7-61 269-329 (405)
42 cd03769 SR_IS607_transposase_l 20.3 1.1E+02 0.0025 22.1 2.8 44 57-100 49-97 (134)
43 COG1909 Uncharacterized protei 20.2 3E+02 0.0065 22.0 5.3 42 44-85 27-69 (167)
44 PRK14056 phenylalanine 4-monoo 20.0 3.7E+02 0.0081 25.4 6.5 52 30-85 270-321 (578)
No 1
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=99.79 E-value=4.7e-19 Score=151.91 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=82.7
Q ss_pred hhhhhhHHHHHHHHhhh----HHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYERD----MDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~e----~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.|.+..|++|++..+.+ .+. .+++|++||++|++|+|++|||+++|++|++||||+||||||+|...|++++|+
T Consensus 245 s~~~~~Gl~Evl~~~~~~L~~~k~~~E~~lle~f~~el~~d~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~rc~ 324 (403)
T TIGR03676 245 SYTGESGLRELVEKAEDLLKDLELMKEKKLMERFFKELVKDGGLAAYGEEEVRKALEMGAVDTLLISEDLRKIRVTFKCP 324 (403)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHhCCCcEEEEEccccceeEEEEcC
Confidence 67889999999998763 333 389999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccc
Q psy9255 91 STSEDRVLHLTPEQEKD 107 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~ 107 (127)
.||.+.++++.+.++.+
T Consensus 325 ~c~~~~~~~~~~~~~~~ 341 (403)
T TIGR03676 325 NCGYEEEKTVKPEEGDK 341 (403)
T ss_pred CCCcceeeecccccccc
Confidence 99999999998888643
No 2
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=99.79 E-value=4.2e-19 Score=152.17 Aligned_cols=101 Identities=27% Similarity=0.395 Sum_probs=84.5
Q ss_pred hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.|.++.|++|++..+. +.+. .+++|++||++|++|+|++|||+++|++||++|||++|||||+|...|++++|+
T Consensus 249 s~gg~~gl~E~l~~~~~~L~~~k~~~E~~lle~F~~ei~~d~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~ 328 (409)
T TIGR00108 249 SYTGEFGIRELIEKSADVLAEVDYMREKKLVQRFLKELIQEDGLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCA 328 (409)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcC
Confidence 4778899999998775 3333 389999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccccCCcccccchHH
Q psy9255 91 STSEDRVLHLTPEQEKDKSHFTDKEMLTD 119 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~e 119 (127)
.||.. .+++++++.+.+++.|...|.+
T Consensus 329 ~~~~~--~~~~~~~~~~~~~~~c~~~~~~ 355 (409)
T TIGR00108 329 ECGEV--IEKTVRELKDKKFAICPACGQE 355 (409)
T ss_pred CCCce--eecccccccccccccCcccCcc
Confidence 99993 6666665555455566655544
No 3
>PRK04011 peptide chain release factor 1; Provisional
Probab=99.77 E-value=1.7e-18 Score=148.50 Aligned_cols=96 Identities=23% Similarity=0.352 Sum_probs=85.4
Q ss_pred hhhhhhHHHHHHHHhhh----HHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYERD----MDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~e----~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
+|.+..|++|++..+.+ .+. .+++|++||++|++|+|++|||+++|++|+++|||++|||||++...|++++|+
T Consensus 253 s~~~~~Gl~E~l~~~~~~L~~~k~~~e~~lle~f~~~l~~d~g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~ 332 (411)
T PRK04011 253 SYTGESGLRELVDKASDLLKEQELVKEKKLMEEFFKELAKDGGLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCP 332 (411)
T ss_pred CCCCccCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcC
Confidence 67889999999998763 333 389999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccccCCcc
Q psy9255 91 STSEDRVLHLTPEQEKDKSHFT 112 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~~~~~~ 112 (127)
.||.+.+.++.+.++.+...+.
T Consensus 333 ~c~~~~~~~~~~~~~~~~~~c~ 354 (411)
T PRK04011 333 NCGYEEEKTVKRREELPEKTCP 354 (411)
T ss_pred CCCcceeeecccccccccccCc
Confidence 9999999999888865555444
No 4
>KOG0688|consensus
Probab=99.76 E-value=5e-19 Score=151.69 Aligned_cols=103 Identities=56% Similarity=0.816 Sum_probs=92.7
Q ss_pred hhhhhhHHHHHHHHhhhHHH------HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYERDMDL------LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~e~~~------~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.|-++.|.-.++.-+.|.=. .+++|.+||++|+.|+|++|||+++|++||+||||+|||||++|++.|+++||+
T Consensus 253 syGGengfnQaIeL~aevlsnvk~vqekkli~~yfdEisqdtgky~Fgv~dTl~aLe~gavetli~~enLd~~ry~~kn~ 332 (431)
T KOG0688|consen 253 SYGGENGFNQAIELSAEVLSNVKFVQEKKLIGKYFDEISQDTGKYCFGVEDTLLALEMGAVETLIVWENLDIIRYELKNS 332 (431)
T ss_pred cccchhhHHHHHHHHHhhhhcceeeehhhHHHHHhhhhhcccCcccccHHHHHHHHHcCCeeehhHhhhhhhhhhhhccc
Confidence 45667777777666655433 399999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccccCCcccccchHHH
Q psy9255 91 STSEDRVLHLTPEQEKDKSHFTDKEMLTDL 120 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~el 120 (127)
. |++++.++.|+|+.++++|.|++||.++
T Consensus 333 ~-~~~~i~~l~~~~e~d~s~~~Dketg~e~ 361 (431)
T KOG0688|consen 333 D-GESVIGFLVPDEEKDKSHFTDKETGWEM 361 (431)
T ss_pred C-Cccceeeecchhhcccccccccccchhh
Confidence 7 9999999999999999999999999885
No 5
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1.7e-18 Score=150.05 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=85.9
Q ss_pred hhhhhhhHHHHHHHHhhhHH----HH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEec
Q psy9255 16 PAVQDLVGKYEILNYERDMD----LL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN 89 (127)
Q Consensus 16 ~~~~d~~g~~e~~~~~~e~~----~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~ 89 (127)
-+|++++|++|++..+.|.- .+ +++|++||+++++++|+++||.++|++||+|||||+|||+|+++..|++++|
T Consensus 251 v~y~~esg~~eli~~A~d~L~~~~~~~eK~l~e~f~~e~~~~~Gla~yG~~~vr~aL~~gaVd~llv~Edl~~~r~~~~c 330 (411)
T COG1503 251 VSYTGESGLRELIEKAEDALKDVDYVREKKLMEEFFKELAKDSGLAVYGEEEVREALEMGAVDTLLVSEDLEKERVTYKC 330 (411)
T ss_pred ccccccccHHHHHHHhHHHHHhhhhhcchhHHHHHHHHhccCcceeecchHHHHHHHHhcccceEEeeccccccceeecC
Confidence 37999999999999999765 33 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCccccccCCcccccchHHH
Q psy9255 90 HSTSEDRVLHLTPEQEKDKSHFTDKEMLTDL 120 (127)
Q Consensus 90 ~~~g~~~v~~~~~~q~~~~~~~~d~~~g~el 120 (127)
+.||++..+....... + .|.+++.|.++
T Consensus 331 ~~~~~e~~~t~~~~~~--~-~~~~~~~~~e~ 358 (411)
T COG1503 331 PTCGYENLKSKREFEQ--K-RFRCPECGSEM 358 (411)
T ss_pred CCcchhhhhccccccc--c-cccCccccccc
Confidence 9999976554333321 1 33666666543
No 6
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=99.54 E-value=5.6e-15 Score=124.31 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=66.9
Q ss_pred hhhhhhhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-----e
Q psy9255 16 PAVQDLVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-----I 82 (127)
Q Consensus 16 ~~~~d~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-----~ 82 (127)
-.|.+..|++|+++. ++|.+.+ +++|++||++|++|+|++|||+++|++|+++|||++|||||++- +
T Consensus 231 ~s~g~~~gl~EvL~~~~v~~~l~d~k~~~E~~~l~~f~~~l~kd~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~ 310 (351)
T TIGR00111 231 CSTGGRAGINEVLKRGLVARILQETRYAKEIMVIDEFLEHLAKDGDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREEI 310 (351)
T ss_pred cCCCchhHHHHHHhChHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEECHHHHHHHHHcCCceEEEEecchhhhHHHH
Confidence 447789999999985 3466664 89999999999999999999999999999999999999999992 2
Q ss_pred eEEEEecCCCCceEEEE
Q psy9255 83 QRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 83 ~Rv~~k~~~~g~~~v~~ 99 (127)
.++.-.....|-++.++
T Consensus 311 ~~l~~~v~~~gg~V~i~ 327 (351)
T TIGR00111 311 EKLLDSVESMGGKVVIL 327 (351)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 33333334456655555
No 7
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=99.53 E-value=4.3e-15 Score=107.67 Aligned_cols=54 Identities=31% Similarity=0.534 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 37 LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 37 ~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.+++|++||+++++++|+++||+++|++|+++|||++|||+|++...+...+|+
T Consensus 4 E~~~ve~f~~~l~k~~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~ 57 (113)
T PF03465_consen 4 EKKLVEEFFEELAKDPGLAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCK 57 (113)
T ss_dssp HHHHHHHHHHHHHTTCSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHH
T ss_pred HHHHHHHHHHHHhhCCCcEEECHHHHHHHHHhCCCcEEEEecccccccceeccc
Confidence 489999999999999999999999999999999999999999998877665554
No 8
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=99.26 E-value=1e-11 Score=106.37 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.2
Q ss_pred hhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255 21 LVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI 82 (127)
Q Consensus 21 ~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~ 82 (127)
..|++|.++. .+|.++. .++|++||..||+++++||||.++|++|++||||++|||+|++..
T Consensus 231 ~~gi~EvLkr~~v~ki~~e~ria~e~~~~e~fl~~iak~~~~v~YG~~eV~~A~e~GAve~LLv~De~lr 300 (352)
T COG1537 231 RAGINEVLKRGAVDKILSETRIAEEIELVEEFLERLAKDDDKVAYGLEEVEKAAEYGAVETLLVTDELLR 300 (352)
T ss_pred hHHHHHHHhhhhHHhHhhhhHHHHHHHHHHHHHHHHhcCCCceeEcHHHHHHHHhcCcceeEEeehhhhc
Confidence 4589998864 4477775 899999999999999999999999999999999999999999843
No 9
>KOG2869|consensus
Probab=98.61 E-value=3.6e-08 Score=85.00 Aligned_cols=59 Identities=24% Similarity=0.448 Sum_probs=51.0
Q ss_pred hHHHHHH------HHhhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255 22 VGKYEIL------NYERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80 (127)
Q Consensus 22 ~g~~e~~------~~~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL 80 (127)
-+|.|++ .+++|..-+ .+.|+.||..++++|++++||.++|.+|.|.||+++|||+|++
T Consensus 251 hslnevL~dp~v~~~l~dtK~~~EvkalddF~~~l~~~~drA~yG~khV~~A~e~~AI~tLLitD~l 317 (379)
T KOG2869|consen 251 HSLNEVLKDPAVASKLQDTKAAKEVKALDDFYVMLSKDPDRACYGPKHVEKANEYGAIETLLITDEL 317 (379)
T ss_pred HHHHHHhcChHHHHHhhchhhHHHHHHHHHHHHHhccCccccccCHHHHHHHHhhcchhheehhhhh
Confidence 3566665 344555553 8999999999999999999999999999999999999999998
No 10
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=93.99 E-value=0.015 Score=41.89 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=44.3
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
++...|++++|.+.|.+|+..|.+.-+|+++|.. ..++.-+|...+..++.+.+.++
T Consensus 11 lA~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e 70 (104)
T PRK05583 11 LTKKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE 70 (104)
T ss_pred HHHHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH
Confidence 5778899999999999999999999999999983 34444556665666666655444
No 11
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=93.80 E-value=0.023 Score=41.41 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=43.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~ 99 (127)
+|..+|+++.|.+.|.+|+..|-+..++|+.|.. ...+...|...+..++.|
T Consensus 19 la~raGKlv~G~~~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 19 LVMKSGKYTLGTKSTLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred HHHHhCCeeecHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 6778899999999999999999999999999995 334456677777766665
No 12
>PRK07714 hypothetical protein; Provisional
Probab=93.78 E-value=0.021 Score=40.34 Aligned_cols=55 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~ 102 (127)
++...|+++.|.+.|.+|+..|-+..+|+.+|.. ..++...|...+..++.+.+.
T Consensus 12 la~raGk~v~G~~~v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk 69 (100)
T PRK07714 12 LANRARKVISGEELVLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR 69 (100)
T ss_pred HHHHhCCeeecHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 5678899999999999999999999999999984 334445566656655544433
No 13
>PRK06683 hypothetical protein; Provisional
Probab=92.88 E-value=0.042 Score=38.16 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=44.2
Q ss_pred hCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255 50 QDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
.+.|+++.|.++|.+|+..|-+..++|.+|.+ ...+..+|...+..++.+.+..+
T Consensus 7 ~~agk~v~G~~~v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~e 64 (82)
T PRK06683 7 SNAENVVVGHKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRK 64 (82)
T ss_pred HhCCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHHH
Confidence 46799999999999999999999999999996 33445678877877766654443
No 14
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=92.71 E-value=0.067 Score=39.69 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=46.5
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
.+..++++.+|.++|.+|++.|-+.-++|++|-+ +..+...|+..+...+..-++..
T Consensus 21 ~a~~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~ 81 (116)
T COG1358 21 KASRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE 81 (116)
T ss_pred HHHhcCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHH
Confidence 3456789999999999999999999999999997 44556788877777776666554
No 15
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=92.35 E-value=0.064 Score=38.11 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=42.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~ 99 (127)
++...|+++.|.++|.+|+..|-+..++|++|.. ...+...|...+..++.|
T Consensus 10 ~a~ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 10 VAVDTGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHcCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556899999999999999999999999999985 334456677767766666
No 16
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=92.22 E-value=0.066 Score=36.97 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=43.5
Q ss_pred HHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCc
Q psy9255 47 EISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPE 103 (127)
Q Consensus 47 eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~ 103 (127)
.+. ..|+.+.|.++|.+|++.|-+..++|..|.. ...+...|...+..++.+.+..
T Consensus 5 ~~~-ragkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~ 63 (82)
T PRK13602 5 KVS-QAKSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK 63 (82)
T ss_pred HHH-hcCCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 344 4589999999999999999999999999986 3334566777777766665443
No 17
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=92.11 E-value=0.39 Score=35.13 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=42.4
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeCC
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~~ 102 (127)
++..+|+++.|.++|.+|+..|-+.-+||+.|.. ...+...|...+...+...++
T Consensus 20 la~ragkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk 78 (117)
T TIGR03677 20 KARETGKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKK 78 (117)
T ss_pred HHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCH
Confidence 3557899999999999999999999999999993 244556677767664444433
No 18
>PRK07283 hypothetical protein; Provisional
Probab=91.71 E-value=0.24 Score=35.08 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=42.3
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPE 103 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~ 103 (127)
++...|+++.|.+.|.+|+..|-+..+|+++|.. ..++.-+|...+..++.+.+.+
T Consensus 12 lA~raGklv~G~~~v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~ 70 (98)
T PRK07283 12 LAQRAGRIISGEELVVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTL 70 (98)
T ss_pred HHHHhCCeeEcHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH
Confidence 6778899999999999999999999999999984 2233335655566555554443
No 19
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=91.46 E-value=0.32 Score=35.88 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=43.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeCC
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~~ 102 (127)
++..+|+++.|.++|.+|++.|-+..++|++|..- ..+...|...+...+...++
T Consensus 24 la~ragklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk 82 (122)
T PRK04175 24 KARDTGKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSK 82 (122)
T ss_pred HHHHcCCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCH
Confidence 46677999999999999999999999999999932 35566677777765444443
No 20
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=89.60 E-value=0.14 Score=35.81 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=39.9
Q ss_pred CCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeC
Q psy9255 52 TGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 52 ~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~ 101 (127)
.|+++.|.++|.+|+..|-+..++|..|.. ...+..+|...+..++...+
T Consensus 6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 6 PSKRVVGAKQTLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CccEEEchHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 589999999999999999999999999986 33445677777776643333
No 21
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=87.55 E-value=0.89 Score=30.90 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=38.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eE-EEEecCCCCceEEE
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QR-YVLKNHSTSEDRVL 98 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~R-v~~k~~~~g~~~v~ 98 (127)
++...+.+++|.++|.++++.|=+.-++++.|..- .+ +...|...+...+.
T Consensus 9 ~a~~~~~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~ 63 (95)
T PF01248_consen 9 LARKAGRLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVF 63 (95)
T ss_dssp HHHHHSEEEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEE
T ss_pred HHHhcCCEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEE
Confidence 34556889999999999999999999999999852 22 34566654554433
No 22
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=86.99 E-value=1.1 Score=32.99 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=31.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
.+-++|+++.|.+.|.+++.+|...-++|..+.+
T Consensus 13 ~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P 46 (100)
T COG1911 13 LAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCP 46 (100)
T ss_pred HHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCC
Confidence 3557899999999999999999999999999875
No 23
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=85.32 E-value=1.7 Score=30.57 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=35.2
Q ss_pred CceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255 53 GKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 53 g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~ 99 (127)
...++|.++|.+|++.|-+..++|..|.+. ..+...|...|..++..
T Consensus 12 ~~~vvG~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 12 QHFVVGLKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred cCceeeHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345999999999999999999999999873 22344566656554444
No 24
>PRK09190 hypothetical protein; Provisional
Probab=84.64 E-value=3.7 Score=33.45 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=41.3
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCC------CCceEEEEeCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHS------TSEDRVLHLTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~------~g~~~v~~~~~~q 104 (127)
+++..|+++.|.+.|..|+..|-+.-||++.|.- ..++.-+|.. .+..++.+.+.++
T Consensus 105 LArRAGklVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~e 170 (220)
T PRK09190 105 LARKAGQVVSGFEKVDAALRSGEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAE 170 (220)
T ss_pred HHhhhCCEeecHHHHHHHHHcCCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHH
Confidence 5778899999999999999999999999999983 2222223433 4555555555544
No 25
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=74.60 E-value=4.2 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=23.3
Q ss_pred eEecHHHHHHHHhcCC-ccEEEeeec
Q psy9255 55 YCFGVEDTLRALELGS-VETLICWEN 79 (127)
Q Consensus 55 v~YG~eev~kALe~GA-VEtLLV~Ed 79 (127)
.+||..-|..||..|. +..|+++++
T Consensus 1 lieG~~~V~eaL~~~~~i~~l~~~~~ 26 (76)
T PF08032_consen 1 LIEGRHAVEEALKSGPRIKKLFVTEE 26 (76)
T ss_dssp EEESHHHHHHHHHCTGGEEEEEEETT
T ss_pred CEEEHHHHHHHHcCCCCccEEEEEcC
Confidence 4799999999999998 999999999
No 26
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=45.55 E-value=27 Score=29.63 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=38.9
Q ss_pred CCCceEecHHHHHHHHhcCCccEEEeeecCc---e-eEEEEecCCCCceEEEEeCCc
Q psy9255 51 DTGKYCFGVEDTLRALELGSVETLICWENLD---I-QRYVLKNHSTSEDRVLHLTPE 103 (127)
Q Consensus 51 d~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~-~Rv~~k~~~~g~~~v~~~~~~ 103 (127)
.|-.+++|.++|.++++.|-+..+||.+|.. + ..+...|...+...+++.++.
T Consensus 129 kp~~LvsG~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKa 185 (263)
T PTZ00222 129 APLAVVTGLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMA 185 (263)
T ss_pred CCCeeccCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 3445889999999999999999999999984 2 234556776666555554443
No 27
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=35.68 E-value=28 Score=29.60 Aligned_cols=55 Identities=5% Similarity=0.068 Sum_probs=40.6
Q ss_pred hCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEE-EEecCCCCceEEEEeCCcc
Q psy9255 50 QDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRY-VLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv-~~k~~~~g~~~v~~~~~~q 104 (127)
+.|-.+.||+.+|.++++.|-+..+||+.|.. +..+ .-+|...|...+++.+.++
T Consensus 128 kkp~~vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~e 186 (266)
T PTZ00365 128 KKPFMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSR 186 (266)
T ss_pred CCchHHHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHH
Confidence 44556889999999999999999999999984 2221 3567777766655555444
No 28
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=33.86 E-value=88 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.3
Q ss_pred hhhhhhHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHhhCCCc
Q psy9255 17 AVQDLVGKYEILNYER---------------------DMDLLFNNIGKYFDEISQDTGK 54 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~---------------------e~~~~~klie~Ff~eIakd~g~ 54 (127)
-|+|-++|++-|.... +.+.-+..+++|+..|+.+|-+
T Consensus 69 RysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~~E~~~~rr~~LqrfL~RV~~hP~L 127 (140)
T cd06891 69 TYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNNEEDARKLKANLQRWFNRVCSDPIL 127 (140)
T ss_pred eHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhCChhh
Confidence 4889999999887654 2223489999999999998743
No 29
>PRK04966 hypothetical protein; Provisional
Probab=33.41 E-value=97 Score=21.45 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCCCceEec----HHHHHHHHhcCCccEEEeeecCc
Q psy9255 37 LFNNIGKYFDEISQDTGKYCFG----VEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 37 ~~klie~Ff~eIakd~g~v~YG----~eev~kALe~GAVEtLLV~EdL~ 81 (127)
..++|++|.-+=.+|.|-.-+. +++|+++|..| +.+|+|+++.
T Consensus 13 L~nLIeefv~ReGTdyG~~E~sl~~kv~qv~~qL~~G--~~viv~se~~ 59 (72)
T PRK04966 13 LENLIESFVLREGTDYGEHERSLEQKVADVKRQLQSG--EAVLVWSELH 59 (72)
T ss_pred HHHHHHHHHhccCccCCcccccHHHHHHHHHHHHHcC--CEEEEECCCC
Confidence 4788888887745554443333 57899999999 4578888763
No 30
>KOG2988|consensus
Probab=30.05 E-value=76 Score=23.88 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=33.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeE
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQR 84 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~R 84 (127)
++..+|+++-|.++|.+.+.+|-..-++++.+-+..|
T Consensus 20 l~mksgkY~lgyK~T~k~~r~gkakL~~is~n~p~lr 56 (112)
T KOG2988|consen 20 LVMKSGKYILGYKQTLKSLRQGKAKLIIISSNCPPLR 56 (112)
T ss_pred HHHhhcceeechHHHHHHHHhccceEEEeecCCCCcc
Confidence 4567899999999999999999999999999987655
No 31
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=25.67 E-value=1.7e+02 Score=20.06 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhCCCceEec----HHHHHHHHhcCCccEEEeeecCc
Q psy9255 37 LFNNIGKYFDEISQDTGKYCFG----VEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 37 ~~klie~Ff~eIakd~g~v~YG----~eev~kALe~GAVEtLLV~EdL~ 81 (127)
..++|++|.-+=.+|.|-.-.. +..|+++|..|- -+|+++++.
T Consensus 13 L~nLIeefv~ReGTdyG~~E~sL~~kv~qv~~qL~~G~--avI~~se~~ 59 (70)
T PF06794_consen 13 LNNLIEEFVLREGTDYGEQELSLEEKVEQVKQQLKSGE--AVIVFSELH 59 (70)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHTTS--EEEEE-TTT
T ss_pred HHHHHHHHHHccCcccCcccccHHHHHHHHHHHHHcCC--EEEEECCcc
Confidence 4788899986655554443333 567999999995 577787763
No 32
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.58 E-value=47 Score=24.70 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=15.0
Q ss_pred CCCceEecHHHHHHHHh
Q psy9255 51 DTGKYCFGVEDTLRALE 67 (127)
Q Consensus 51 d~g~v~YG~eev~kALe 67 (127)
|...|+||.-||-+|+.
T Consensus 90 D~~~VVYG~tDV~~A~~ 106 (114)
T PF07511_consen 90 DDRYVVYGETDVARALA 106 (114)
T ss_pred cCCeEEecccHHHHHHH
Confidence 66789999999999985
No 33
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=25.48 E-value=67 Score=26.97 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=32.4
Q ss_pred HHHHhcCCccEEEeeecCceeEEEEecCC---------CCceEEEEeCCccc
Q psy9255 63 LRALELGSVETLICWENLDIQRYVLKNHS---------TSEDRVLHLTPEQE 105 (127)
Q Consensus 63 ~kALe~GAVEtLLV~EdL~~~Rv~~k~~~---------~g~~~v~~~~~~q~ 105 (127)
.=+.-..|+-.||.|||-.+..+.+.+=. -|...++|+.|+++
T Consensus 113 qv~qAF~als~lLfSeDSPiDKWKVTDM~rv~qqsRV~~GAQfTLYvKpd~e 164 (241)
T PRK15245 113 QVPQAFQALSGLLFSEDSPVDKWKVTDMERVSQQSRVGLGAQFTLYVKPDQE 164 (241)
T ss_pred HHHHHHHHhhhhhcCCCCCcceeeeccccccCccchhcccceEEEEecCccc
Confidence 33444568999999999998888665432 26778999999995
No 34
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=25.20 E-value=1.9e+02 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCccEEEeeec
Q psy9255 59 VEDTLRALELGSVETLICWEN 79 (127)
Q Consensus 59 ~eev~kALe~GAVEtLLV~Ed 79 (127)
.+.+.+|.+.||.-.|++.+.
T Consensus 58 ~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 58 GDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred HHHHHHHHHCCCcEEEEEECC
Confidence 468999999999988888665
No 35
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=25.01 E-value=83 Score=21.66 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.4
Q ss_pred ecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 57 FGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 57 YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
-|....++++..|.+++|+|++--.
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~R 76 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDR 76 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecch
Confidence 3788999999999999999998554
No 36
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=24.97 E-value=81 Score=21.13 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=15.7
Q ss_pred EEEEecCCCCceEEEEeCCc
Q psy9255 84 RYVLKNHSTSEDRVLHLTPE 103 (127)
Q Consensus 84 Rv~~k~~~~g~~~v~~~~~~ 103 (127)
=+.+||+.|+.+.++|-...
T Consensus 9 F~~VkCp~C~n~q~vFsha~ 28 (59)
T PRK00415 9 FLKVKCPDCGNEQVVFSHAS 28 (59)
T ss_pred EEEEECCCCCCeEEEEecCC
Confidence 35789999999988885544
No 37
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=94 Score=21.45 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=18.6
Q ss_pred cCceeEEEEecCCCCceEEEEeCCcc
Q psy9255 79 NLDIQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 79 dL~~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
+..-.=+.++|+.||.+-++|-.+..
T Consensus 12 ~p~s~Fl~VkCpdC~N~q~vFshast 37 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQVVFSHAST 37 (67)
T ss_pred CCCceEEEEECCCCCCEEEEeccCce
Confidence 44444456899999999988866543
No 38
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=22.22 E-value=2.3e+02 Score=21.30 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=44.3
Q ss_pred cchh-hhhhhHHHHHHHHhhhHHHH---HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255 14 RYPA-VQDLVGKYEILNYERDMDLL---FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI 82 (127)
Q Consensus 14 ~~~~-~~d~~g~~e~~~~~~e~~~~---~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~ 82 (127)
+||+ |+ .+||+++...+.++... .++.++-|. .......+.-..++..++-.+..+.+-+.+....
T Consensus 7 ~~p~~Y~-~~~L~~L~~~m~~~~~~~~~~~~~~~~~~--~~~~P~~~~~P~~a~~~~~~~~~e~v~l~~~~Gr 76 (136)
T PF03711_consen 7 EYPARYQ-NMGLRDLCQAMHEILKELNVKKLQKKAFS--SPPLPEIVMTPREAYREAVRGEKERVPLEEAVGR 76 (136)
T ss_dssp HTCCCCT-T-BHHHHHHHHHHHHHHTTHHHHHHHHHS--GHS--EESS-HHHHHHHHHTT-EEEEEGGG-TTS
T ss_pred hCHHHHc-CcCHHHHHHHHHHHHHHcCHHHHHHHHhc--CccCcceeeCcHHHHHHHHhhcceEEEccccCCe
Confidence 4666 77 45999999999988774 666666662 1233456777888888888888888887776653
No 39
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=22.10 E-value=1.2e+02 Score=19.88 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=15.5
Q ss_pred eeEEEEecCCCCceE-EEEeCCcc
Q psy9255 82 IQRYVLKNHSTSEDR-VLHLTPEQ 104 (127)
Q Consensus 82 ~~Rv~~k~~~~g~~~-v~~~~~~q 104 (127)
+..+.+|||+|+..- +.-.+|..
T Consensus 20 ~~~leIKCpRC~tiN~~~a~~~~~ 43 (51)
T PF10122_consen 20 VIELEIKCPRCKTINHVRATSPEP 43 (51)
T ss_pred ccEEEEECCCCCccceEeccCCCC
Confidence 447889999999853 22355555
No 40
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=22.02 E-value=1.1e+02 Score=25.97 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=20.1
Q ss_pred CceeEEEEecCCCCceEEEEeCCcc
Q psy9255 80 LDIQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 80 L~~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
..|.|..++|+.|+.++++-..|..
T Consensus 71 ~~I~rF~~kC~~C~~~i~~kTDPkn 95 (324)
T PF04502_consen 71 TPIYRFYIKCPRCSNEIEFKTDPKN 95 (324)
T ss_pred ceEEEEEEEcCCCCCEEeeecCCCC
Confidence 5789999999999997776666554
No 41
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=20.75 E-value=2.2e+02 Score=24.77 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=47.8
Q ss_pred hhhhhcccchhhhhhhHHHHHHHHhhhHHH------HHHHHHHHHHHHhhCCCceEecHHH
Q psy9255 7 DKHKYLGRYPAVQDLVGKYEILNYERDMDL------LFNNIGKYFDEISQDTGKYCFGVED 61 (127)
Q Consensus 7 ~~~~~~~~~~~~~d~~g~~e~~~~~~e~~~------~~klie~Ff~eIakd~g~v~YG~ee 61 (127)
..+++-+..|.+...+|+.+.++...++-. +..+.+.+++.+..-++.-+||..+
T Consensus 269 ~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~ 329 (405)
T COG0520 269 LPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPD 329 (405)
T ss_pred cchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCc
Confidence 458889999999999999999999986654 3888888899999889999999876
No 42
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=20.30 E-value=1.1e+02 Score=22.09 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=27.8
Q ss_pred ecHHHHHHHHhcCCccEEEeeecCceeEE-----EEecCCCCceEEEEe
Q psy9255 57 FGVEDTLRALELGSVETLICWENLDIQRY-----VLKNHSTSEDRVLHL 100 (127)
Q Consensus 57 YG~eev~kALe~GAVEtLLV~EdL~~~Rv-----~~k~~~~g~~~v~~~ 100 (127)
=|....++++..|-|++|||++=-.+-|- ...+...|..++...
T Consensus 49 p~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~gv~l~~~~ 97 (134)
T cd03769 49 KGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAYGVEIVVIN 97 (134)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHCCCEEEEEe
Confidence 35788899999999999999873322220 112445566555553
No 43
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.18 E-value=3e+02 Score=22.00 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHhhCCC-ceEecHHHHHHHHhcCCccEEEeeecCceeEE
Q psy9255 44 YFDEISQDTG-KYCFGVEDTLRALELGSVETLICWENLDIQRY 85 (127)
Q Consensus 44 Ff~eIakd~g-~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv 85 (127)
|+.+++.+++ .++=|===|.++++.|++-.|-|.|.-...|.
T Consensus 27 ~~~~l~~~~~~litVGDvvT~n~~~~gl~P~l~ivD~KT~R~~ 69 (167)
T COG1909 27 EVRDLSEDTPSLITVGDVVTRNLIEVGLIPDLAIVDGKTKRRE 69 (167)
T ss_pred hhhhhccCCCcEEEEchHHHHHHHHhCCCCcEEEeeccccccc
Confidence 8888998877 89999888999999999999999998755443
No 44
>PRK14056 phenylalanine 4-monooxygenase; Provisional
Probab=20.04 E-value=3.7e+02 Score=25.40 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred HhhhHHHHHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEE
Q psy9255 30 YERDMDLLFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRY 85 (127)
Q Consensus 30 ~~~e~~~~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv 85 (127)
+...++.....+++|...++-..| |.+-+.+|++.+.+-|+-.+.-+.+.-+
T Consensus 270 V~~sfe~L~~~l~ef~~~m~~r~G----G~~gl~kai~s~~~~t~~lssGlqvsG~ 321 (578)
T PRK14056 270 VCPDFEELSEVLEEFAETMAFRTG----GLEGLEKAIRSENLATAELSSGLQITGT 321 (578)
T ss_pred EeCCHHHHHHHHHHHHHhhhhhcC----CHHHHHHHHhcCCCceEEecCCcEEEEE
Confidence 345677778999999999988766 6789999999999999999999976544
Done!