Query psy9255
Match_columns 127
No_of_seqs 108 out of 382
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:47:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ir9_A Peptide chain release f 99.9 1.8E-24 6.3E-29 164.8 9.2 102 16-118 2-111 (166)
2 3e20_C Eukaryotic peptide chai 99.8 3.8E-19 1.3E-23 152.3 6.5 103 17-120 262-373 (441)
3 1dt9_A ERF1, protein (eukaryot 99.7 5.2E-18 1.8E-22 143.4 7.5 103 17-119 257-365 (437)
4 3obw_A Protein pelota homolog; 99.5 3E-14 1E-18 119.5 6.8 69 15-83 238-314 (364)
5 1x52_A Pelota homolog, CGI-17; 99.5 1.6E-14 5.4E-19 105.6 4.1 51 30-80 12-64 (124)
6 3oby_A Protein pelota homolog; 99.5 5.9E-14 2E-18 117.4 6.8 67 15-82 219-293 (352)
7 3j15_A Protein pelota; ribosom 99.4 1E-13 3.5E-18 115.4 6.5 69 14-82 232-308 (357)
8 2vgn_A DOM34; translation term 99.4 2.4E-13 8.3E-18 114.2 6.6 66 16-81 251-324 (386)
9 3mca_B Protein DOM34, elongati 99.4 1.1E-13 3.9E-18 116.6 3.8 64 17-80 246-317 (390)
10 3agj_B Protein pelota homolog; 99.3 5.7E-13 2E-17 110.7 4.8 65 17-81 227-299 (358)
11 2qi2_A Pelota, cell division p 99.3 2.2E-12 7.6E-17 107.3 6.3 84 16-101 221-316 (347)
12 3agk_A Peptide chain release f 99.2 1.1E-11 3.8E-16 102.5 7.6 84 17-100 256-346 (373)
13 3j21_Z 50S ribosomal protein L 93.9 0.017 5.8E-07 39.5 1.1 57 48-104 9-69 (99)
14 2lbw_A H/ACA ribonucleoprotein 93.1 0.22 7.4E-06 35.3 5.9 34 49-82 15-48 (121)
15 3v7q_A Probable ribosomal prot 92.4 0.16 5.6E-06 34.7 4.3 57 48-104 13-72 (101)
16 3iz5_f 60S ribosomal protein L 92.4 0.038 1.3E-06 39.2 1.0 57 48-104 20-80 (112)
17 3u5e_c L32, RP73, YL38, 60S ri 91.9 0.18 6.3E-06 34.8 4.1 61 39-99 5-70 (105)
18 4a18_G RPL30; ribosome, eukary 91.9 0.11 3.9E-06 35.7 3.0 50 48-97 16-68 (104)
19 2jnb_A NHP2-like protein 1; sp 91.8 0.089 3E-06 39.0 2.5 57 48-104 44-104 (144)
20 1xbi_A 50S ribosomal protein L 91.7 0.44 1.5E-05 33.6 6.0 58 38-96 14-75 (120)
21 3on1_A BH2414 protein; structu 91.7 0.23 7.8E-06 33.8 4.3 55 48-102 12-69 (101)
22 2ale_A SNU13, NHP2/L7AE family 91.4 0.35 1.2E-05 35.1 5.3 51 49-99 27-81 (134)
23 3o85_A Ribosomal protein L7AE; 90.5 0.55 1.9E-05 33.4 5.5 55 49-103 26-84 (122)
24 1vq8_F 50S ribosomal protein L 90.4 0.59 2E-05 32.7 5.6 53 49-101 24-80 (120)
25 3cpq_A 50S ribosomal protein L 90.1 0.22 7.6E-06 34.5 3.1 51 49-99 16-69 (110)
26 2fc3_A 50S ribosomal protein L 89.6 0.57 1.9E-05 33.1 5.0 53 49-101 23-79 (124)
27 1w41_A 50S ribosomal protein L 89.6 0.26 8.8E-06 33.5 3.0 51 49-99 11-64 (101)
28 1rlg_A 50S ribosomal protein L 88.7 0.66 2.2E-05 32.4 4.7 49 49-97 22-74 (119)
29 3vi6_A 60S ribosomal protein L 88.7 0.35 1.2E-05 34.6 3.4 34 48-81 21-54 (125)
30 3v7e_A Ribosome-associated pro 88.7 0.46 1.6E-05 31.4 3.7 53 50-102 7-62 (82)
31 2aif_A Ribosomal protein L7A; 87.9 0.96 3.3E-05 32.6 5.3 53 49-101 36-92 (135)
32 2xzm_U Ribosomal protein L7AE 84.5 1.4 4.9E-05 31.5 4.7 60 41-101 12-75 (126)
33 2zkr_f 60S ribosomal protein L 68.6 4.3 0.00015 33.1 3.7 32 50-81 131-162 (266)
34 3u5c_M 40S ribosomal protein S 65.4 9.4 0.00032 28.2 4.7 62 38-100 25-92 (143)
35 3jyw_G 60S ribosomal protein L 60.8 6.3 0.00021 27.9 2.9 56 49-104 20-79 (113)
36 3izc_H 60S ribosomal protein R 47.1 20 0.00068 29.0 4.1 31 51-81 128-158 (256)
37 2kg4_A Growth arrest and DNA-d 35.0 53 0.0018 24.8 4.6 65 34-99 16-92 (165)
38 3iz5_H 60S ribosomal protein L 33.8 42 0.0014 27.2 4.1 48 50-97 123-174 (258)
39 4a17_F RPL7A, 60S ribosomal pr 30.0 59 0.002 26.3 4.3 49 51-99 121-173 (255)
40 1gz0_A Hypothetical tRNA/RRNA 29.9 38 0.0013 26.2 3.1 28 53-80 12-41 (253)
41 3bo6_A Hydrophilic protein, VI 28.8 18 0.00063 28.7 1.1 37 69-105 98-143 (220)
42 1x7o_A Avirb, rRNA methyltrans 27.8 49 0.0017 26.1 3.5 27 54-80 41-68 (287)
43 1ipa_A RRMH, RNA 2'-O-ribose m 27.7 48 0.0016 26.0 3.3 28 53-80 28-56 (274)
44 3nk6_A 23S rRNA methyltransfer 24.1 61 0.0021 25.5 3.3 27 54-80 35-62 (277)
45 3i0u_A Phosphothreonine lyase 23.6 22 0.00075 28.3 0.7 37 69-105 96-141 (218)
46 3iuk_A Uncharacterized protein 23.0 1.8E+02 0.006 25.5 6.3 47 20-66 262-314 (562)
47 1qxf_A GR2, 30S ribosomal prot 21.3 71 0.0024 21.0 2.7 18 85-102 6-23 (66)
48 1k81_A EIF-2-beta, probable tr 20.6 1.2E+02 0.0041 17.0 3.3 27 69-98 7-33 (36)
No 1
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=99.91 E-value=1.8e-24 Score=164.84 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=85.5
Q ss_pred hhhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEec
Q psy9255 16 PAVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKN 89 (127)
Q Consensus 16 ~~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~ 89 (127)
.+|+++.|++|++..+. +.+. .+++|++||++|++|+|++|||+++|++|++||||++|||||+|...|++++|
T Consensus 2 ~sy~ge~Gl~E~i~~~~~~L~~~k~~~Ekkli~~f~~~i~~d~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c 81 (166)
T 3ir9_A 2 NAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKC 81 (166)
T ss_dssp -CCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEEC
Confidence 36899999999998775 4444 39999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEE--eCCccccccCCcccccchH
Q psy9255 90 HSTSEDRVLH--LTPEQEKDKSHFTDKEMLT 118 (127)
Q Consensus 90 ~~~g~~~v~~--~~~~q~~~~~~~~d~~~g~ 118 (127)
+.||...+++ .+|.+ +++..+.|+++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~~~~c~~~g~ 111 (166)
T 3ir9_A 82 SVCGYENKWTRRWKPGE-PAPAAGNCPKCGS 111 (166)
T ss_dssp SSSSCEEEEEECCCC---CCCCCCBCTTTCC
T ss_pred CCCCceeEEEeecChhh-cccccccccccCc
Confidence 9999876554 66665 3445667777665
No 2
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=99.76 E-value=3.8e-19 Score=152.30 Aligned_cols=103 Identities=37% Similarity=0.624 Sum_probs=58.9
Q ss_pred hhhhhhHHHHHHHHh----hhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYE----RDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~----~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.|.+..|++|+++.+ ++.+. .+++|++||++|++|+|+++||+++|.+|+++|||++|||+|++...|++++|+
T Consensus 262 s~gg~~Gl~EvL~~~~~~L~d~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~ 341 (441)
T 3e20_C 262 SYGGDAGFNQAIELAADTLSNVKYVQEKKLIQRFFDEISLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNS 341 (441)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC-----
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECC
Confidence 456778999999865 35555 499999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccc---cCCcccccchHHH
Q psy9255 91 STSEDRVLHLTPEQEKD---KSHFTDKEMLTDL 120 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~---~~~~~d~~~g~el 120 (127)
.|+ +.+++++|+|+.+ .+.|.|+.+|.++
T Consensus 342 ~~~-~~~~~~~~~~~~~~~~~~~~~c~~~g~~~ 373 (441)
T 3e20_C 342 EGN-PVITYMTKEQEEKDSTNSFLLDKDTGAEM 373 (441)
T ss_dssp ------CCEECSCTTTCCC--------------
T ss_pred CCc-eEEEecCccccccccccccccCcccCccc
Confidence 985 5678899998655 5678888888753
No 3
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=99.72 E-value=5.2e-18 Score=143.40 Aligned_cols=103 Identities=57% Similarity=0.879 Sum_probs=76.9
Q ss_pred hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCceeEEEEecC
Q psy9255 17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNH 90 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv~~k~~ 90 (127)
.|.++.|++|++..+. +.+. .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++.+.|++++|+
T Consensus 257 s~g~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~r~~ 336 (437)
T 1dt9_A 257 SYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQ 336 (437)
T ss_dssp SSCTTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHHHSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC---
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEEEcC
Confidence 4778889999999876 3444 499999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeCCccccccCCcccccchHH
Q psy9255 91 STSEDRVLHLTPEQEKDKSHFTDKEMLTD 119 (127)
Q Consensus 91 ~~g~~~v~~~~~~q~~~~~~~~d~~~g~e 119 (127)
.||.+.++++.|+++.+.+.|.|+..|.+
T Consensus 337 ~~g~~~~~~~~~~~~~~r~~~~~~~~g~~ 365 (437)
T 1dt9_A 337 GTEEEKILYLTPEQEKDKSHFTDKETGQE 365 (437)
T ss_dssp ------CCCBCTTCSSCCCCCC-------
T ss_pred CCCceeeeeeccccccccccccCcccCcc
Confidence 99998888999887545566776666653
No 4
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=99.49 E-value=3e-14 Score=119.47 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=61.1
Q ss_pred chhhhhhhHHHHHHHH------hhhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCcee
Q psy9255 15 YPAVQDLVGKYEILNY------ERDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ 83 (127)
Q Consensus 15 ~~~~~d~~g~~e~~~~------~~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~ 83 (127)
.-.|.++.|++|+++. +++.+.+ +++|++||++|++|+|+++||+++|++|+++|||++|||+|++...
T Consensus 238 d~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~ 314 (364)
T 3obw_A 238 SVSSATRAGLHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSS 314 (364)
T ss_dssp CCSCSSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSS
T ss_pred eCCCCchHhHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCCcEEEEeccCccc
Confidence 3468899999999864 4566664 9999999999999999999999999999999999999999999653
No 5
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=99.48 E-value=1.6e-14 Score=105.56 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=46.8
Q ss_pred HhhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255 30 YERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80 (127)
Q Consensus 30 ~~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL 80 (127)
++++.+. .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++
T Consensus 12 ~l~~~k~~~E~~ll~~f~~~i~~d~g~~~yG~~eV~~Ale~GAVetLLI~d~l 64 (124)
T 1x52_A 12 RLSDTKAAGEVKALDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL 64 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSCGGGEEESHHHHHHHHHTTCEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCccEEEechhh
Confidence 3455666 49999999999999999999999999999999999999999998
No 6
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=99.46 E-value=5.9e-14 Score=117.36 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=59.5
Q ss_pred chhhhhhhHHHHHHHHh------hhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255 15 YPAVQDLVGKYEILNYE------RDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI 82 (127)
Q Consensus 15 ~~~~~d~~g~~e~~~~~------~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~ 82 (127)
...|.++.|++|+++.. +|.+.+ +++|++||++|++| |++|||+++|++|+++|||++|||||++..
T Consensus 219 ~~s~gg~~gl~Evl~~~~v~~~L~~~k~~~E~~~le~f~~~l~~d-~~a~YG~~eV~~Ale~GAVetLLIsd~l~r 293 (352)
T 3oby_A 219 DVSSVGSRGFIEILKRRVVDKIVGEVRLAEEAEYIDRLLEGIAKG-ERVAYGLDEVREAHNYRAIEVLLVADEFLL 293 (352)
T ss_dssp CCCCCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSEEESHHHHHHHHTTTCEEEEEEEHHHHH
T ss_pred ECCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEECHHHHHHHHHcCCceEEEEeccchh
Confidence 45688999999998766 355554 99999999999999 999999999999999999999999999853
No 7
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=99.44 E-value=1e-13 Score=115.43 Aligned_cols=69 Identities=22% Similarity=0.428 Sum_probs=60.8
Q ss_pred cchhhhhhhHHHHHHHHh------hhHHHH--HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255 14 RYPAVQDLVGKYEILNYE------RDMDLL--FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI 82 (127)
Q Consensus 14 ~~~~~~d~~g~~e~~~~~------~e~~~~--~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~ 82 (127)
-...|.++.|++|+++.. ++.+.+ +++|++||++|++|+|++|||+++|++|+++|||++|||+|++..
T Consensus 232 v~~s~g~~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r 308 (357)
T 3j15_A 232 EDTSVTGRTGIYEVIKRGVVDRVYQENRVAKEVQLVEKVLENIARNNGLVAYGLKEVEEAVNYGAVETLLVLDELLK 308 (357)
T ss_dssp CCCSCCHHHHHHHHHHTCTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTEEESTHHHHHHHHHTCEEEEEEEHHHHT
T ss_pred EeCCCCchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHhCCCcEEEEeccccc
Confidence 356788899999998753 455664 899999999999999999999999999999999999999999864
No 8
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=99.41 E-value=2.4e-13 Score=114.23 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=58.9
Q ss_pred hhhhhhhHHHHHHHH--h----hhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 16 PAVQDLVGKYEILNY--E----RDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 16 ~~~~d~~g~~e~~~~--~----~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
-.|.+..|++|++.. + ++.+. .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++-
T Consensus 251 ~s~~~~~gl~Evl~~~~v~~~L~d~k~~~E~~~l~~f~~~l~~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~ 324 (386)
T 2vgn_A 251 CSTGYLQGINEVLKNPLYASKLQDTKYSKEIMVMDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKVL 324 (386)
T ss_dssp CSCSSTHHHHHHHHCGGGHHHHHHHHTHHHHHHHHHHHHHHTTTCSSEEESHHHHHHHHHTTCEEEEEEETTGG
T ss_pred CCCCccccHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHHHHcCCcEEEEEechhh
Confidence 367788999999998 4 35455 399999999999999999999999999999999999999999983
No 9
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.39 E-value=1.1e-13 Score=116.63 Aligned_cols=64 Identities=25% Similarity=0.435 Sum_probs=57.2
Q ss_pred hhhhhhHHHHHHHH------hhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecC
Q psy9255 17 AVQDLVGKYEILNY------ERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80 (127)
Q Consensus 17 ~~~d~~g~~e~~~~------~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL 80 (127)
.|.+..|++|+++. +++.+. .+++|++||++|++|+|+++||+++|++|+++|||++|||+|++
T Consensus 246 s~gg~~gl~Evl~~~~v~~~l~~~k~~~E~~lle~f~~~l~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l 317 (390)
T 3mca_B 246 STGHIHSLNEILKDPAVESKLADTKYVQEIRVLNKFYDVMNEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317 (390)
T ss_dssp SCSSGGGGGTSSSCHHHHHHHTTSHHHHHHHHHHHHHHHHHHCTTSEEESHHHHHHHHHTTCBSSCEEEETT
T ss_pred CCCcchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHcCCCeEEEEeccc
Confidence 56777899998766 345555 49999999999999999999999999999999999999999998
No 10
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=99.34 E-value=5.7e-13 Score=110.70 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=58.2
Q ss_pred hhhhhhHHHHHHHH------hhhHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 17 AVQDLVGKYEILNY------ERDMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 17 ~~~d~~g~~e~~~~------~~e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
.|.+..|++|++.. +++... .+++|++||+++++|+|+++||+++|++|+++|||++|||+|++.
T Consensus 227 s~g~~~gl~E~l~~~~v~~~l~~~k~~~e~~ll~~f~~~l~~d~g~a~yG~~eV~~Al~~GAVetLLV~d~l~ 299 (358)
T 3agj_B 227 SMGGVAGVREALRRESVTRILRELSIVEAEGVLEEFLRRIAKSRDTVAYTPGEVLAVARMGAVDTVLLVDTLL 299 (358)
T ss_dssp SCCHHHHHHHHTTSHHHHHHTTTCHHHHHHHHHHHHHHHHHHCGGGEEESHHHHHHHHHHTCEEEEEEEHHHH
T ss_pred CCCCchhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEECHHHHHHHHHhCCceEEEEecccc
Confidence 57888999998776 345555 499999999999999999999999999999999999999999986
No 11
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=99.30 E-value=2.2e-12 Score=107.31 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=65.5
Q ss_pred hhhhhhhHHHHHHHHh--h----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCce----e
Q psy9255 16 PAVQDLVGKYEILNYE--R----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDI----Q 83 (127)
Q Consensus 16 ~~~~d~~g~~e~~~~~--~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~ 83 (127)
-.|.++.|++|+++.. . +.+. .+++|++||++|++| ++|||+++|++|+++|||++|||+|++.. .
T Consensus 221 ~s~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~~~ 298 (347)
T 2qi2_A 221 ANRTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAVKKD--MGVYGRDQTESALQMGALSDLIITDEMFRTEDGR 298 (347)
T ss_dssp CSSSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHHHTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHTSHHHH
T ss_pred cCCCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CEEEcHHHHHHHHHcCCCeEEEEecccccchhHH
Confidence 3688899999999887 4 4444 499999999999999 99999999999999999999999999862 2
Q ss_pred EEEEecCCCCceEEEEeC
Q psy9255 84 RYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 84 Rv~~k~~~~g~~~v~~~~ 101 (127)
.+.-.+...|.++.++-+
T Consensus 299 ~L~e~~~~~G~~V~ivs~ 316 (347)
T 2qi2_A 299 RSLSIAQTVGTRIHIVSV 316 (347)
T ss_dssp HHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 222223344555555433
No 12
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=99.25 E-value=1.1e-11 Score=102.50 Aligned_cols=84 Identities=25% Similarity=0.350 Sum_probs=64.9
Q ss_pred hhhhhhHHHHHHHHhh----hHHH--HHHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc-eeEEEEec
Q psy9255 17 AVQDLVGKYEILNYER----DMDL--LFNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD-IQRYVLKN 89 (127)
Q Consensus 17 ~~~d~~g~~e~~~~~~----e~~~--~~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~-~~Rv~~k~ 89 (127)
.|.+..|++|++..+. +... .+++|++||+++++|+|+++||+++|.+|+++|||++|||+|+-+ +..+.-..
T Consensus 256 s~~~~~g~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~rd~~~~L~e~a 335 (373)
T 3agk_A 256 AYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAKGTGMIVYGEKDVEAALEMGAVKTLLIHESREDLEEWVEKA 335 (373)
T ss_dssp CCCHHHHHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHTTCCCEEESHHHHHHHHHTTCEEEEEEETTCTTHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeeCHHHHHHHHHhCCccEEEEeCChhHHHHHHHHH
Confidence 5678889999999766 4444 499999999999999999999999999999999999999999821 11112223
Q ss_pred CCCCceEEEEe
Q psy9255 90 HSTSEDRVLHL 100 (127)
Q Consensus 90 ~~~g~~~v~~~ 100 (127)
..+|.++.++-
T Consensus 336 ~~~G~~V~ivs 346 (373)
T 3agk_A 336 KSSGAQVIVVP 346 (373)
T ss_dssp TTTTCEEEEEC
T ss_pred HHcCCEEEEEC
Confidence 34566555543
No 13
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.88 E-value=0.017 Score=39.45 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=44.2
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE-eCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH-LTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~-~~~~q 104 (127)
++...|+++.|.++|.+|++.|-+..+++..|-+ ...+...|...+..++.| .+..+
T Consensus 9 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~e 69 (99)
T 3j21_Z 9 KAMETGKVVLGSNETIRLAKTGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSVE 69 (99)
T ss_dssp HHHHSSCEEESHHHHHHHHHHTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSCG
T ss_pred HHHHhCCEeECHHHHHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHH
Confidence 4556799999999999999999999999999975 333355677667776666 55544
No 14
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=93.12 E-value=0.22 Score=35.27 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=30.9
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCce
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI 82 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~ 82 (127)
|..+|.++.|.++|.+|++.|-+..++|+.|.+-
T Consensus 15 a~k~gkl~~G~~~v~kai~~gkakLViiA~D~~~ 48 (121)
T 2lbw_A 15 ASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWP 48 (121)
T ss_dssp HHTTTCEEESHHHHHHHHHHSCCCEEEECTTCSC
T ss_pred HHHcCCccccHHHHHHHHHcCCceEEEEeCCCCH
Confidence 5577999999999999999999999999998753
No 15
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=92.43 E-value=0.16 Score=34.73 Aligned_cols=57 Identities=7% Similarity=0.006 Sum_probs=44.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
++...|+++.|.++|.+|++.|-+..+|+..|-. ...+...|...+..++.+.+..+
T Consensus 13 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~e 72 (101)
T 3v7q_A 13 LANRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAV 72 (101)
T ss_dssp HHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHH
T ss_pred hhhhhhhcccchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHH
Confidence 5678899999999999999999999999999985 33345567766666666544433
No 16
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=92.37 E-value=0.038 Score=39.18 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=44.4
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE-eCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH-LTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~-~~~~q 104 (127)
++..+|+++.|.++|.+|++.|-+..+||+.|.. ...+...|...+..++.+ .+..+
T Consensus 20 la~kagk~~~G~~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~e 80 (112)
T 3iz5_f 20 LVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVD 80 (112)
T ss_dssp HHHTTCEEEESHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCT
T ss_pred HHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHH
Confidence 5667899999999999999999999999999986 333456677666666655 44444
No 17
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=91.93 E-value=0.18 Score=34.76 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHHHHHH--HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255 39 NNIGKYFDE--ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 39 klie~Ff~e--Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~ 99 (127)
++.++++.. ++...|+++.|.++|.+|++.|-+..+|+..|-.- ..+...|...+..++.|
T Consensus 5 k~~~~i~~~L~la~kagk~v~G~~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~ 70 (105)
T 3u5e_c 5 KSQESINQKLALVIKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYF 70 (105)
T ss_dssp ----CHHHHHHHHHTTSEEEESHHHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCeeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 344444443 45678999999999999999999999999999852 22344555445544433
No 18
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=91.86 E-value=0.11 Score=35.69 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=37.3
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEE
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRV 97 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v 97 (127)
++...|+++.|.++|.+|++.|-+..+|++.|-.- ..+...|...+..++
T Consensus 16 la~kagklv~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~ 68 (104)
T 4a18_G 16 LVMRSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIH 68 (104)
T ss_dssp HHHHHSEEEESHHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHhCCEeECHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEE
Confidence 34567999999999999999999999999999863 233344444344444
No 19
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=91.82 E-value=0.089 Score=38.98 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=44.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCcee----EEEEecCCCCceEEEEeCCcc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ----RYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~----Rv~~k~~~~g~~~v~~~~~~q 104 (127)
+|...|+++.|.++|.+|++.|-+..++|+.|.+-. .+...|...|...+.+.++.+
T Consensus 44 lA~kagkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~e 104 (144)
T 2jnb_A 44 QSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQA 104 (144)
T ss_dssp HHHHTTCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHH
T ss_pred HHHHcCCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHH
Confidence 455779999999999999999999999999998532 356677777776555544433
No 20
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=91.73 E-value=0.44 Score=33.61 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceE
Q psy9255 38 FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDR 96 (127)
Q Consensus 38 ~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~ 96 (127)
..+-+++++.+..- |+++.|.++|.+|++.|-+..+||+.|.+ +..+...|...+...
T Consensus 14 ~~l~~k~~~ll~~A-gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~ 75 (120)
T 1xbi_A 14 EEIQKELLDAVAKA-QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPY 75 (120)
T ss_dssp HHHHHHHHHHHHTC-SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHc-CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCE
Confidence 34555666666655 89999999999999999999999999873 233445555445543
No 21
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=91.65 E-value=0.23 Score=33.84 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=41.4
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~ 102 (127)
++...|+++.|.++|.+|++.|-+..+|++.|-. ...+...|...+..++.+.+.
T Consensus 12 la~kagk~v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~ 69 (101)
T 3on1_A 12 LAARARQLLTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNR 69 (101)
T ss_dssp HHHHTTCEEESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred HHHHHCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH
Confidence 5667899999999999999999999999999985 233344566555555544333
No 22
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=91.43 E-value=0.35 Score=35.15 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=38.4
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCcee----EEEEecCCCCceEEEE
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDIQ----RYVLKNHSTSEDRVLH 99 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~----Rv~~k~~~~g~~~v~~ 99 (127)
|...|+++.|.++|.+|++.|-+..++|+.|.+-. .+...|...|...+.+
T Consensus 27 A~k~gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 27 AANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp HHHTTCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEE
T ss_pred HHHcCCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 55679999999999999999999999999987532 2344555555544443
No 23
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=90.47 E-value=0.55 Score=33.39 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=41.9
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeCCc
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLTPE 103 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~~~ 103 (127)
|...|+++.|.++|.+|++.|-+..++++.|..- ..+...|...|...+...+..
T Consensus 26 A~kagklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~ 84 (122)
T 3o85_A 26 GASLQAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKN 84 (122)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHH
T ss_pred HHHhCCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHH
Confidence 4567999999999999999999999999999842 344566777676644444433
No 24
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=90.44 E-value=0.59 Score=32.72 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=40.2
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~ 101 (127)
|...|+++.|.++|.+|++.|-+..++++.|.. ...+...|...+...+...+
T Consensus 24 A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~s 80 (120)
T 1vq8_F 24 ARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQ 80 (120)
T ss_dssp HHHSSCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESC
T ss_pred HHHcCCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 446689999999999999999999999999873 23445667766665433333
No 25
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=90.12 E-value=0.22 Score=34.53 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=39.3
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEE
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~ 99 (127)
+...|+++.|.++|.+|++.|-+..+|++.|.. +..+...|...+..++.+
T Consensus 16 a~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 16 AVDTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHSEEEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHcCCeeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445699999999999999999999999999985 223345566556655555
No 26
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=89.58 E-value=0.57 Score=33.06 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=39.1
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~ 101 (127)
+...|+++.|.++|.+|++.|-+..+|++.|.. +..+...|...+...+...+
T Consensus 23 A~kagkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~s 79 (124)
T 2fc3_A 23 ARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS 79 (124)
T ss_dssp HHHHSEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESC
T ss_pred HHHhCCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECC
Confidence 345589999999999999999999999999873 23345566655555433333
No 27
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=89.57 E-value=0.26 Score=33.49 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=37.9
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCce---eEEEEecCCCCceEEEE
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI---QRYVLKNHSTSEDRVLH 99 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~---~Rv~~k~~~~g~~~v~~ 99 (127)
+...|+++.|.++|.+|++.|-+..++++.|-+. ..+...|...+..++.|
T Consensus 11 a~kagkl~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~ 64 (101)
T 1w41_A 11 AQDTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYYARLSGIPVYEF 64 (101)
T ss_dssp HHHHSEEEESHHHHHHHHHHTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHcCCEeECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 4456999999999999999999999999998652 22334555445554544
No 28
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=88.70 E-value=0.66 Score=32.44 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=36.8
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEE
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRV 97 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v 97 (127)
|...|+++.|.++|.+|++.|-+..++++.|.. ...+...|...+...+
T Consensus 22 A~kag~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~ 74 (119)
T 1rlg_A 22 VRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI 74 (119)
T ss_dssp HHHHSEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEE
T ss_pred HHHhCCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEE
Confidence 345589999999999999999999999999873 2334455655455433
No 29
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=88.69 E-value=0.35 Score=34.65 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=31.1
Q ss_pred HhhCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 48 ISQDTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 48 Iakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
++...|+++.|.++|.+|++.|-+..+||+.|..
T Consensus 21 lA~kaGklv~G~~~v~kaIr~gkakLVIiA~Das 54 (125)
T 3vi6_A 21 LVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCP 54 (125)
T ss_dssp HHHHHSEEEESHHHHHHHHHTTCCSEEEECTTSC
T ss_pred HHHHhCCeeeCHHHHHHHHHcCCceEEEEeCCCC
Confidence 4556799999999999999999999999999985
No 30
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=88.67 E-value=0.46 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=40.6
Q ss_pred hCCCceEecHHHHHHHHhcCCccEEEeeecCc---eeEEEEecCCCCceEEEEeCC
Q psy9255 50 QDTGKYCFGVEDTLRALELGSVETLICWENLD---IQRYVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~---~~Rv~~k~~~~g~~~v~~~~~ 102 (127)
+.+|+++.|.++|.+|++.|-+..++|+.|.+ ...+...|...+...+.+.++
T Consensus 7 ~kagk~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk 62 (82)
T 3v7e_A 7 SQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESM 62 (82)
T ss_dssp HHCSEEEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred HHcCCeeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 45699999999999999999999999999986 333455666656655555433
No 31
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=87.89 E-value=0.96 Score=32.57 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=40.2
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeC
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~ 101 (127)
+...|+++.|.++|.+|++.|-+..+++..|..- ..+...|...+...+.+.+
T Consensus 36 A~kagklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~s 92 (135)
T 2aif_A 36 ACNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92 (135)
T ss_dssp HHHTTCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHcCCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECC
Confidence 5567999999999999999999999999998853 3345566655555544433
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=84.54 E-value=1.4 Score=31.53 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecCCCCceEEEEeC
Q psy9255 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNHSTSEDRVLHLT 101 (127)
Q Consensus 41 ie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~~~g~~~v~~~~ 101 (127)
+.+++. .|...|+++.|..+|.+|++.|-+..++|..|-+ +..+...|...+...+.+-+
T Consensus 12 l~~~L~-~A~~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 12 LAKVIK-SSNCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp HHHHHT-TTTSSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESC
T ss_pred HHHHHH-HHHHcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC
Confidence 444443 3556689999999999999999999999999883 13345677776776665543
No 33
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=68.59 E-value=4.3 Score=33.08 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=29.4
Q ss_pred hCCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 50 QDTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
+.++.++.|.++|.+|++.|-+..+||+.|.+
T Consensus 131 k~~~~L~~G~keV~KaIekgkAkLVIIA~Das 162 (266)
T 2zkr_f 131 KRPPVLRAGVNTVTTLVENKKAQLVVIAHDVD 162 (266)
T ss_dssp SSCCCCCBSHHHHHHHHHTTCCSEEEEESCCS
T ss_pred CCCCeeeeChHHHHHHHHhCCceEEEEecCCC
Confidence 46788999999999999999999999999973
No 34
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=65.43 E-value=9.4 Score=28.22 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhCCCceEecHHHHHHHHhcCCccEEEeeecCc----eeEEEEecC--CCCceEEEEe
Q psy9255 38 FNNIGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLD----IQRYVLKNH--STSEDRVLHL 100 (127)
Q Consensus 38 ~klie~Ff~eIakd~g~v~YG~eev~kALe~GAVEtLLV~EdL~----~~Rv~~k~~--~~g~~~v~~~ 100 (127)
.+.|.+.++.- ...|.++-|..+|.+|++.|-+..+++.+|-+ +..+...|. ..+...+.+-
T Consensus 25 ~~aL~~vLk~A-~~~g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~ 92 (143)
T 3u5c_M 25 EDALKVVLRTA-LVHDGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVA 92 (143)
T ss_dssp SHHHHHHHHHH-HHTTCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCS
T ss_pred HHHHHHHHHHH-HHcCCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEEC
Confidence 34555555553 44578999999999999999999999999985 223355666 6565544443
No 35
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=60.80 E-value=6.3 Score=27.88 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=41.9
Q ss_pred hhCCCceEecHHHHHHHHhcCCccEEEeeecCce----eEEEEecCCCCceEEEEeCCcc
Q psy9255 49 SQDTGKYCFGVEDTLRALELGSVETLICWENLDI----QRYVLKNHSTSEDRVLHLTPEQ 104 (127)
Q Consensus 49 akd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~----~Rv~~k~~~~g~~~v~~~~~~q 104 (127)
.+.|.....|.++|.+|++.|-+..++|..|.+- ..+...|...|...+.+.+..+
T Consensus 20 ~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~ 79 (113)
T 3jyw_G 20 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKAR 79 (113)
T ss_dssp SSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTT
T ss_pred CCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 4567778999999999999999999999999853 2234567766766665544433
No 36
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=47.10 E-value=20 Score=29.02 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=27.7
Q ss_pred CCCceEecHHHHHHHHhcCCccEEEeeecCc
Q psy9255 51 DTGKYCFGVEDTLRALELGSVETLICWENLD 81 (127)
Q Consensus 51 d~g~v~YG~eev~kALe~GAVEtLLV~EdL~ 81 (127)
.+..+.+|.++|.+|++.|-+..++|+.|.+
T Consensus 128 ~p~~lk~G~keV~KaIekgKAkLVVIA~Dad 158 (256)
T 3izc_H 128 KPYAVKYGLNHVVALIENKKAKLVLIANDVD 158 (256)
T ss_dssp CSCCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred CChhhhccHHHHHHHHHhCcceEEEEeCCCC
Confidence 3456789999999999999999999999985
No 37
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=34.99 E-value=53 Score=24.78 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEecHHHHHHHH--hcCCccEEEeeecCc--ee--------EEEEecCCCCceEEEE
Q psy9255 34 MDLLFNNIGKYFDEISQDTGKYCFGVEDTLRAL--ELGSVETLICWENLD--IQ--------RYVLKNHSTSEDRVLH 99 (127)
Q Consensus 34 ~~~~~klie~Ff~eIakd~g~v~YG~eev~kAL--e~GAVEtLLV~EdL~--~~--------Rv~~k~~~~g~~~v~~ 99 (127)
|..+.+.+.+.+.... ..+..+=|..++.+|+ +.|-+...++.+|-+ .. .+...|...+..++..
T Consensus 16 m~~l~~al~evLk~A~-~~~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V 92 (165)
T 2kg4_A 16 MDKVGDALEEVLSKAL-SQRTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRV 92 (165)
T ss_dssp HHHHHHHHHHHHHHHH-HHTCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHH-HcCCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEE
Confidence 4334445555555544 3467889999999999 999999999999974 22 2335565555554444
No 38
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=33.81 E-value=42 Score=27.24 Aligned_cols=48 Identities=6% Similarity=0.020 Sum_probs=35.0
Q ss_pred hCCCceEecHHHHHHHHhcCCccEEEeeecCceeEE----EEecCCCCceEE
Q psy9255 50 QDTGKYCFGVEDTLRALELGSVETLICWENLDIQRY----VLKNHSTSEDRV 97 (127)
Q Consensus 50 kd~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~Rv----~~k~~~~g~~~v 97 (127)
+.+..+.+|+.+|-+++|.|-...++|..|.+-..+ -..|...|..-+
T Consensus 123 krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~ 174 (258)
T 3iz5_H 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYC 174 (258)
T ss_dssp CCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEE
T ss_pred CCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeE
Confidence 345668899999999999999999999999863322 234555454433
No 39
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=29.97 E-value=59 Score=26.26 Aligned_cols=49 Identities=6% Similarity=-0.025 Sum_probs=34.9
Q ss_pred CCCceEecHHHHHHHHhcCCccEEEeeecCcee----EEEEecCCCCceEEEE
Q psy9255 51 DTGKYCFGVEDTLRALELGSVETLICWENLDIQ----RYVLKNHSTSEDRVLH 99 (127)
Q Consensus 51 d~g~v~YG~eev~kALe~GAVEtLLV~EdL~~~----Rv~~k~~~~g~~~v~~ 99 (127)
.+.....|+.+|.++++.|-+..++|..|.+-. .+...|...|...+.+
T Consensus 121 ~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V 173 (255)
T 4a17_F 121 KPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFV 173 (255)
T ss_dssp CCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE
Confidence 345578999999999999999999999998522 2234455545444443
No 40
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=29.93 E-value=38 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=24.4
Q ss_pred CceEecHHHHHHHHhcC--CccEEEeeecC
Q psy9255 53 GKYCFGVEDTLRALELG--SVETLICWENL 80 (127)
Q Consensus 53 g~v~YG~eev~kALe~G--AVEtLLV~EdL 80 (127)
-.++||..-|..|++.| .+++|+++++.
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~ 41 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGR 41 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSC
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCc
Confidence 34899999999999998 58999999874
No 41
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=28.83 E-value=18 Score=28.74 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=30.2
Q ss_pred CCccEEEeeecCceeEEEEecCC---------CCceEEEEeCCccc
Q psy9255 69 GSVETLICWENLDIQRYVLKNHS---------TSEDRVLHLTPEQE 105 (127)
Q Consensus 69 GAVEtLLV~EdL~~~Rv~~k~~~---------~g~~~v~~~~~~q~ 105 (127)
.|+-.||.+||-.+..+.+.+=. -|...++|..|+++
T Consensus 98 ~al~~LL~SeDSPvDKWKVTDM~rv~~qsRV~~GAQfTLY~Kpd~e 143 (220)
T 3bo6_A 98 QALSGLLFSVDSPIDKWKVTDMERVDQQSRVAVGAQFTLYVKPDQE 143 (220)
T ss_dssp HHHHHHHTCTTCSCSEEEEECTTTBCTTSTTTSSCCEEEECCCSST
T ss_pred HHHHHhhcCCCCCcceeeeccccccchhhhhcccceEEEEecCccc
Confidence 46788999999999998877643 27779999999994
No 42
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=27.75 E-value=49 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.217 Sum_probs=24.0
Q ss_pred ceEecHHHHHHHHhcCC-ccEEEeeecC
Q psy9255 54 KYCFGVEDTLRALELGS-VETLICWENL 80 (127)
Q Consensus 54 ~v~YG~eev~kALe~GA-VEtLLV~EdL 80 (127)
-++||..-|..|++.|. ++.|+++++.
T Consensus 41 f~veG~~~V~eal~~~~~i~~l~~~~~~ 68 (287)
T 1x7o_A 41 FLVMGVRPISLAVEHGWPVRTLLYDGQR 68 (287)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEESSC
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEecCc
Confidence 47999999999999987 8999999874
No 43
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=27.70 E-value=48 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.4
Q ss_pred CceEecHHHHHHHHhcC-CccEEEeeecC
Q psy9255 53 GKYCFGVEDTLRALELG-SVETLICWENL 80 (127)
Q Consensus 53 g~v~YG~eev~kALe~G-AVEtLLV~EdL 80 (127)
--++||..-|..|++.| .++.|+++++.
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~ 56 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGG 56 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTC
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCc
Confidence 34899999999999998 69999999874
No 44
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=24.09 E-value=61 Score=25.50 Aligned_cols=27 Identities=7% Similarity=0.023 Sum_probs=23.9
Q ss_pred ceEecHHHHHHHHhcC-CccEEEeeecC
Q psy9255 54 KYCFGVEDTLRALELG-SVETLICWENL 80 (127)
Q Consensus 54 ~v~YG~eev~kALe~G-AVEtLLV~EdL 80 (127)
-++||..-|..|++.| .++.|+++++.
T Consensus 35 flveG~~~V~eaL~~~~~i~~l~~~~~~ 62 (277)
T 3nk6_A 35 TLIEDTEPLMECIRAGVQFIEVYGSSGT 62 (277)
T ss_dssp EEEESHHHHHHHHHTTCCEEEEEEETTS
T ss_pred EEEEeHHHHHHHHhCCCCeEEEEEeCCc
Confidence 3899999999999998 68899998875
No 45
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=23.63 E-value=22 Score=28.25 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCccEEEeeecCceeEEEEecCCC---------CceEEEEeCCccc
Q psy9255 69 GSVETLICWENLDIQRYVLKNHST---------SEDRVLHLTPEQE 105 (127)
Q Consensus 69 GAVEtLLV~EdL~~~Rv~~k~~~~---------g~~~v~~~~~~q~ 105 (127)
.|+-.||.+||-.+..+.+.+=.| |...++|..|+++
T Consensus 96 ~ai~~LL~SeDSPvDKWKVTDM~rv~~qsRV~~GAQfTLY~Kpd~e 141 (218)
T 3i0u_A 96 QILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSDQE 141 (218)
T ss_dssp HHHHHHHTCTTCSCSEEEEECTTTCC----CCSSCCEEEEEECCSS
T ss_pred HHHHHHhcCCCCCcceeeecccccCcchhhhcccceEEEEecCccc
Confidence 477889999999999888766432 6778999999994
No 46
>3iuk_A Uncharacterized protein; PF05960.1, DUF885, M32 carboxypeptidase-like fold, PSI, MCSG structural genomics, protein structure initiative; 1.85A {Arthrobacter aurescens}
Probab=23.03 E-value=1.8e+02 Score=25.46 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhhhHHHH-HHH-----HHHHHHHHhhCCCceEecHHHHHHHH
Q psy9255 20 DLVGKYEILNYERDMDLL-FNN-----IGKYFDEISQDTGKYCFGVEDTLRAL 66 (127)
Q Consensus 20 d~~g~~e~~~~~~e~~~~-~kl-----ie~Ff~eIakd~g~v~YG~eev~kAL 66 (127)
-..|+.|+-++..||+.+ .++ +.+||..+.+|+....-|.++.+..+
T Consensus 262 h~~Gl~Evari~aem~~i~~~~~~~gs~~e~~~~L~~dp~~~~~~~d~l~~~~ 314 (562)
T 3iuk_A 262 YAWGVQELERLISEQEKVAGQIKPGASIEEAKSILNNDPARQIKGTDALKAWM 314 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHCGGGEEESHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCccccCCCHHHHHHHH
Confidence 347999999999999997 444 79999999999776666777766544
No 47
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=21.34 E-value=71 Score=20.96 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.5
Q ss_pred EEEecCCCCceEEEEeCC
Q psy9255 85 YVLKNHSTSEDRVLHLTP 102 (127)
Q Consensus 85 v~~k~~~~g~~~v~~~~~ 102 (127)
+.+|||.|+.+.++|-..
T Consensus 6 m~VKCp~C~niq~VFShA 23 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHP 23 (66)
T ss_dssp EEEECTTTCCEEEEESSC
T ss_pred EEEECCCCCCceEEEecC
Confidence 568999999988888443
No 48
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.59 E-value=1.2e+02 Score=17.04 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=19.5
Q ss_pred CCccEEEeeecCceeEEEEecCCCCceEEE
Q psy9255 69 GSVETLICWENLDIQRYVLKNHSTSEDRVL 98 (127)
Q Consensus 69 GAVEtLLV~EdL~~~Rv~~k~~~~g~~~v~ 98 (127)
|.-||-|+-++ ..+.++|..||....+
T Consensus 7 ~~peT~l~~~~---~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 7 GKPDTKIIKEG---RVHLLKCMACGAIRPI 33 (36)
T ss_dssp CSCEEEEEEET---TEEEEEEETTTEEEEE
T ss_pred CCCCcEEEEeC---CcEEEEhhcCCCcccc
Confidence 55678888765 4457899999986543
Done!