RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9255
         (127 letters)



>d1dt9a2 d.79.3.2 (A:277-422) C-terminal domain of eukaryotic
           peptide chain release factor subunit 1, ERF1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 95.0 bits (236), Expect = 8e-27
 Identities = 58/80 (72%), Positives = 68/80 (85%)

Query: 41  IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHL 100
           IG+YFDEISQDTGKYCFGVEDTL+ALE+G+VE LI +ENLDI RYVL    T E+++L+L
Sbjct: 11  IGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYL 70

Query: 101 TPEQEKDKSHFTDKEMLTDL 120
           TPEQEKDKSHFTDKE   + 
Sbjct: 71  TPEQEKDKSHFTDKETGQEH 90


>d1x52a1 d.79.3.2 (A:8-118) Cell division protein pelota {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 111

 Score = 57.1 bits (138), Expect = 2e-12
 Identities = 6/40 (15%), Positives = 21/40 (52%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          +  ++  +  +  +  +G++   +A E  +++TL+  + L
Sbjct: 18 LDDFYKMLQHEPDRAFYGLKQVEKANEAMAIDTLLISDEL 57


>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae
          [TaxId: 4932]}
          Length = 104

 Score = 54.3 bits (131), Expect = 2e-11
 Identities = 7/40 (17%), Positives = 23/40 (57%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          + ++   +++D  K  +G ++ ++A E G++  L+  + +
Sbjct: 7  MDEFLLHLNKDDDKAWYGEKEVVKAAEYGAISYLLLTDKV 46


>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 95

 Score = 46.9 bits (112), Expect = 1e-08
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 41 IGKYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENL 80
          + ++   + +D G Y  G + T  AL++G++  LI  + +
Sbjct: 11 VDEFLVAVKKDMGVY--GRDQTESALQMGALSDLIITDEM 48


>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
           [TaxId: 56636]}
          Length = 124

 Score = 25.6 bits (56), Expect = 1.2
 Identities = 10/55 (18%), Positives = 28/55 (50%)

Query: 47  EISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLT 101
           + +++TG+   G  +T +A+E G  + ++  E++D    V+      +++ +   
Sbjct: 21  KRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYV 75


>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 25.2 bits (55), Expect = 1.9
 Identities = 12/55 (21%), Positives = 29/55 (52%)

Query: 47  EISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLT 101
           E+++DTG    G  +T +++E GS E +   E++  +  V+     ++++ +   
Sbjct: 21  EVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFI 75


>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase,
           beta-subunit {Human (Homo sapiens) [TaxId: 9606]}
          Length = 401

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 55  YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLTPEQEKDK 108
           Y    E     L+  SVET+   E   ++  + +  S+ +   L      +++K
Sbjct: 4   YSLRPEHARERLQDDSVETVTSIEQAKVEEKIQEVFSSYKFNHLVPRLVLQREK 57


>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 213

 Score = 24.2 bits (52), Expect = 6.0
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 1  MRKYFKDKHKYLG-RYPAVQDLVGKYEILNYERDMDLLFNNIGKYFDE 47
          M  Y K +  + G   P  Q L  +    ++    + L   I  Y+ +
Sbjct: 14 MSAYMKHQFVFAGIPAPERQALSKQLLKESHTWPKEKLCQEIEAYYQK 61


>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 23.8 bits (50), Expect = 7.8
 Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 2/27 (7%)

Query: 20  DLVGKYEILNYERDMD--LLFNNIGKY 44
           D  G+Y+I+N +        + ++G +
Sbjct: 439 DAPGRYDIMNLQYTEANRYDYVHVGTW 465


>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 113

 Score = 23.2 bits (50), Expect = 8.5
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 47  EISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHSTSEDRVLHLT 101
           E  +++GK   G  +T +A+E G  + +   E++D    V       E++ +   
Sbjct: 14  EKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYI 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,838
Number of extensions: 20678
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 12
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)